Query psy17544
Match_columns 266
No_of_seqs 175 out of 1450
Neff 5.9
Searched_HMMs 46136
Date Sat Aug 17 01:15:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17544.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17544hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1350|consensus 100.0 1.2E-58 2.6E-63 426.9 14.1 216 50-265 49-264 (521)
2 COG0055 AtpD F0F1-type ATP syn 100.0 3.1E-54 6.7E-59 403.7 15.8 208 52-265 2-214 (468)
3 CHL00060 atpB ATP synthase CF1 100.0 2.4E-52 5.1E-57 406.5 22.8 216 50-265 13-235 (494)
4 TIGR03305 alt_F1F0_F1_bet alte 100.0 2.9E-52 6.4E-57 403.1 21.3 205 54-265 1-205 (449)
5 PRK12597 F0F1 ATP synthase sub 100.0 1.4E-51 3.1E-56 399.9 21.5 208 52-265 2-210 (461)
6 COG1157 FliI Flagellar biosynt 100.0 1.3E-51 2.7E-56 391.1 20.0 201 50-263 22-225 (441)
7 PRK09280 F0F1 ATP synthase sub 100.0 3.5E-51 7.7E-56 396.6 21.9 208 52-265 2-211 (463)
8 PRK02118 V-type ATP synthase s 100.0 2.4E-50 5.2E-55 388.1 21.2 202 51-265 3-204 (436)
9 TIGR01039 atpD ATP synthase, F 100.0 2.5E-50 5.4E-55 389.9 21.1 205 53-265 2-210 (461)
10 PRK04196 V-type ATP synthase s 100.0 6.6E-49 1.4E-53 381.8 21.8 206 51-265 2-213 (460)
11 TIGR01041 ATP_syn_B_arch ATP s 100.0 1.3E-48 2.8E-53 379.2 21.5 204 53-265 2-211 (458)
12 TIGR03324 alt_F1F0_F1_al alter 100.0 1.3E-48 2.9E-53 380.8 21.3 211 41-265 18-228 (497)
13 PRK09281 F0F1 ATP synthase sub 100.0 4.4E-48 9.5E-53 379.1 20.3 211 41-265 18-228 (502)
14 CHL00059 atpA ATP synthase CF1 100.0 7.5E-48 1.6E-52 374.3 20.4 204 50-265 4-207 (485)
15 TIGR00962 atpA proton transloc 100.0 8.4E-48 1.8E-52 377.0 20.4 211 41-265 17-227 (501)
16 PRK13343 F0F1 ATP synthase sub 100.0 1.4E-47 3.1E-52 374.5 20.2 212 40-265 17-228 (502)
17 PRK08927 fliI flagellum-specif 100.0 2.3E-46 5E-51 361.5 21.2 208 48-265 13-222 (442)
18 PRK08972 fliI flagellum-specif 100.0 1.8E-46 3.8E-51 361.7 20.3 206 48-265 21-226 (444)
19 PRK07165 F0F1 ATP synthase sub 100.0 1.5E-46 3.3E-51 366.4 19.4 201 54-264 3-208 (507)
20 TIGR01040 V-ATPase_V1_B V-type 100.0 5.4E-46 1.2E-50 359.2 20.4 203 53-265 2-220 (466)
21 PRK06936 type III secretion sy 100.0 1.3E-45 2.8E-50 356.1 19.9 204 50-265 21-226 (439)
22 TIGR01042 V-ATPase_V1_A V-type 100.0 1.1E-45 2.5E-50 363.7 18.5 205 53-265 2-299 (591)
23 TIGR01043 ATP_syn_A_arch ATP s 100.0 2.4E-45 5.1E-50 362.3 19.8 205 53-265 1-293 (578)
24 PTZ00185 ATPase alpha subunit; 100.0 6E-45 1.3E-49 354.9 20.9 207 51-265 38-263 (574)
25 PRK04192 V-type ATP synthase s 100.0 4.3E-45 9.3E-50 360.9 19.4 206 52-265 3-298 (586)
26 PRK05922 type III secretion sy 100.0 8.2E-43 1.8E-47 336.4 20.3 205 49-265 16-221 (434)
27 PRK05688 fliI flagellum-specif 100.0 6.7E-43 1.4E-47 338.2 19.4 206 48-265 23-232 (451)
28 PRK09099 type III secretion sy 100.0 1E-42 2.2E-47 336.7 19.7 206 48-265 20-227 (441)
29 PRK07960 fliI flagellum-specif 100.0 8.7E-43 1.9E-47 337.0 17.9 206 48-265 23-239 (455)
30 PRK06820 type III secretion sy 100.0 2.9E-42 6.2E-47 333.3 19.8 210 40-265 18-227 (440)
31 TIGR03497 FliI_clade2 flagella 100.0 2.7E-42 5.9E-47 331.9 19.3 200 54-265 1-201 (413)
32 TIGR03496 FliI_clade1 flagella 100.0 3.9E-42 8.4E-47 330.6 20.0 200 54-265 1-201 (411)
33 TIGR03498 FliI_clade3 flagella 100.0 5.2E-42 1.1E-46 330.1 20.0 202 54-265 1-204 (418)
34 PRK08149 ATP synthase SpaL; Va 100.0 3.3E-41 7.1E-46 325.0 19.7 204 50-265 4-215 (428)
35 TIGR01026 fliI_yscN ATPase Fli 100.0 8.2E-41 1.8E-45 323.9 20.4 206 48-265 19-227 (440)
36 PRK07594 type III secretion sy 100.0 6.8E-41 1.5E-45 323.2 19.6 205 46-265 15-219 (433)
37 PRK06315 type III secretion sy 100.0 7E-41 1.5E-45 323.8 19.5 207 48-266 19-230 (442)
38 PRK07196 fliI flagellum-specif 100.0 7.6E-41 1.7E-45 322.9 19.2 204 48-264 13-218 (434)
39 PRK08472 fliI flagellum-specif 100.0 8.8E-41 1.9E-45 322.5 18.9 205 48-265 14-220 (434)
40 TIGR02546 III_secr_ATP type II 100.0 2.9E-40 6.3E-45 318.8 19.6 204 50-265 3-209 (422)
41 cd01135 V_A-ATPase_B V/A-type 100.0 5.9E-41 1.3E-45 306.8 11.7 135 124-265 1-139 (276)
42 PRK07721 fliI flagellum-specif 100.0 1.2E-39 2.7E-44 315.5 18.2 206 48-265 14-222 (438)
43 PRK06793 fliI flagellum-specif 100.0 2.3E-39 5.1E-44 312.5 19.4 203 48-265 17-220 (432)
44 cd01133 F1-ATPase_beta F1 ATP 100.0 4.1E-40 8.8E-45 301.5 12.2 136 124-265 1-136 (274)
45 PRK06002 fliI flagellum-specif 100.0 9.5E-39 2.1E-43 309.1 19.4 211 41-265 16-228 (450)
46 COG0056 AtpA F0F1-type ATP syn 100.0 4.5E-38 9.7E-43 299.9 16.1 202 50-263 25-226 (504)
47 cd01132 F1_ATPase_alpha F1 ATP 100.0 1.1E-38 2.4E-43 291.8 10.6 134 125-265 2-135 (274)
48 COG1156 NtpB Archaeal/vacuolar 100.0 5.7E-34 1.2E-38 269.2 13.9 198 50-250 4-207 (463)
49 COG1155 NtpA Archaeal/vacuolar 100.0 1.4E-33 3E-38 272.9 15.4 203 53-263 2-293 (588)
50 cd01136 ATPase_flagellum-secre 100.0 1.8E-30 4E-35 243.2 9.4 133 124-265 1-133 (326)
51 cd01134 V_A-ATPase_A V/A-type 100.0 1.8E-30 4E-35 244.4 8.4 105 157-265 123-228 (369)
52 KOG1351|consensus 100.0 1.1E-29 2.4E-34 233.2 12.9 216 36-263 10-240 (489)
53 PRK14698 V-type ATP synthase s 100.0 1.3E-28 2.8E-33 257.4 18.7 151 52-207 3-242 (1017)
54 KOG1352|consensus 100.0 4.6E-30 1E-34 242.3 3.0 206 50-263 18-316 (618)
55 PRK12608 transcription termina 99.9 5.4E-27 1.2E-31 222.8 9.8 131 108-245 55-187 (380)
56 KOG1353|consensus 99.9 8.1E-24 1.8E-28 190.6 8.8 190 48-250 16-212 (340)
57 PF00006 ATP-synt_ab: ATP synt 99.9 3.2E-22 7E-27 177.9 5.9 79 178-265 1-79 (215)
58 PRK12678 transcription termina 99.8 6.4E-21 1.4E-25 188.7 9.6 131 108-243 329-468 (672)
59 PRK09376 rho transcription ter 99.8 2E-20 4.4E-25 178.9 10.1 132 108-244 87-222 (416)
60 COG1158 Rho Transcription term 99.5 7.7E-15 1.7E-19 137.3 7.5 133 109-249 91-230 (422)
61 TIGR00767 rho transcription te 99.5 1.7E-14 3.7E-19 138.7 9.0 132 108-244 87-221 (415)
62 cd01128 rho_factor Transcripti 99.5 8.4E-14 1.8E-18 126.5 7.2 64 180-243 4-68 (249)
63 PF02874 ATP-synt_ab_N: ATP sy 98.8 1.4E-08 3.1E-13 74.1 6.5 66 56-122 1-69 (69)
64 PF06745 KaiC: KaiC; InterPro 97.7 2.9E-05 6.4E-10 68.3 3.8 66 176-241 1-68 (226)
65 TIGR03877 thermo_KaiC_1 KaiC d 97.7 9.2E-05 2E-09 66.2 6.1 65 175-240 2-68 (237)
66 COG0467 RAD55 RecA-superfamily 97.7 0.0001 2.2E-09 66.6 6.4 68 174-242 3-72 (260)
67 cd01394 radB RadB. The archaea 97.6 7.7E-05 1.7E-09 65.2 5.4 51 176-227 1-53 (218)
68 PRK04328 hypothetical protein; 97.5 0.00017 3.8E-09 65.2 6.3 64 175-239 4-69 (249)
69 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00016 3.4E-09 63.7 5.5 41 176-216 1-43 (235)
70 TIGR03881 KaiC_arch_4 KaiC dom 97.5 0.00026 5.7E-09 62.3 6.3 60 176-236 2-63 (229)
71 TIGR02655 circ_KaiC circadian 97.4 0.00023 4.9E-09 70.5 6.3 66 175-240 2-69 (484)
72 PRK06067 flagellar accessory p 97.4 0.00033 7.1E-09 62.2 6.1 71 173-247 4-76 (234)
73 cd01122 GP4d_helicase GP4d_hel 97.4 0.00056 1.2E-08 61.6 7.5 69 173-241 10-79 (271)
74 PRK09361 radB DNA repair and r 97.4 0.00032 6.8E-09 61.7 5.7 56 173-229 2-59 (225)
75 cd01393 recA_like RecA is a b 97.4 0.00046 1E-08 60.4 6.5 42 176-217 1-44 (226)
76 PRK09302 circadian clock prote 97.3 0.00036 7.7E-09 69.2 5.9 70 174-243 11-82 (509)
77 TIGR03878 thermo_KaiC_2 KaiC d 97.3 0.00069 1.5E-08 61.7 6.6 57 176-233 4-76 (259)
78 PRK09302 circadian clock prote 97.0 0.0012 2.6E-08 65.5 6.3 72 172-247 251-324 (509)
79 smart00382 AAA ATPases associa 97.0 0.00057 1.2E-08 52.6 3.1 26 191-216 1-26 (148)
80 TIGR02012 tigrfam_recA protein 97.0 0.00076 1.6E-08 63.8 4.0 53 174-227 34-89 (321)
81 cd00983 recA RecA is a bacter 96.9 0.0008 1.7E-08 63.8 3.6 55 173-228 33-90 (325)
82 cd01120 RecA-like_NTPases RecA 96.9 0.0051 1.1E-07 49.5 7.8 54 195-249 2-55 (165)
83 TIGR02236 recomb_radA DNA repa 96.9 0.0013 2.8E-08 61.0 4.8 69 173-241 74-151 (310)
84 PRK09354 recA recombinase A; P 96.9 0.00092 2E-08 63.9 3.8 56 173-229 38-96 (349)
85 TIGR02655 circ_KaiC circadian 96.8 0.0024 5.1E-08 63.3 6.5 67 171-238 240-308 (484)
86 PRK08533 flagellar accessory p 96.8 0.004 8.7E-08 55.8 7.2 63 176-239 6-70 (230)
87 COG1124 DppF ABC-type dipeptid 96.8 0.001 2.2E-08 60.7 3.0 30 185-214 26-55 (252)
88 PLN03187 meiotic recombination 96.8 0.0025 5.4E-08 60.8 5.8 72 171-242 103-183 (344)
89 TIGR03880 KaiC_arch_3 KaiC dom 96.7 0.0038 8.3E-08 54.9 6.2 60 179-239 1-62 (224)
90 cd01121 Sms Sms (bacterial rad 96.7 0.0029 6.3E-08 60.9 5.9 58 173-232 61-120 (372)
91 TIGR00416 sms DNA repair prote 96.6 0.0028 6.2E-08 62.5 5.2 70 174-247 74-145 (454)
92 cd03222 ABC_RNaseL_inhibitor T 96.6 0.0025 5.4E-08 55.1 3.9 35 181-215 14-48 (177)
93 PTZ00035 Rad51 protein; Provis 96.6 0.0037 8E-08 59.4 5.4 49 168-216 92-142 (337)
94 cd00820 PEPCK_HprK Phosphoenol 96.5 0.0019 4.2E-08 51.8 2.9 29 185-213 8-36 (107)
95 TIGR02238 recomb_DMC1 meiotic 96.5 0.0042 9.1E-08 58.5 5.3 73 169-241 71-152 (313)
96 COG1116 TauB ABC-type nitrate/ 96.5 0.0022 4.7E-08 58.6 3.2 34 180-213 16-50 (248)
97 TIGR01166 cbiO cobalt transpor 96.5 0.0022 4.8E-08 54.9 3.1 29 186-214 12-40 (190)
98 PRK11823 DNA repair protein Ra 96.5 0.0046 1E-07 60.8 5.7 71 174-248 60-132 (446)
99 TIGR02211 LolD_lipo_ex lipopro 96.4 0.0024 5.1E-08 55.9 3.1 32 184-215 23-54 (221)
100 cd03229 ABC_Class3 This class 96.4 0.0026 5.6E-08 54.2 3.1 29 186-214 20-48 (178)
101 cd03254 ABCC_Glucan_exporter_l 96.4 0.0025 5.4E-08 56.0 3.1 32 184-215 21-52 (229)
102 cd03260 ABC_PstB_phosphate_tra 96.4 0.0027 5.9E-08 55.8 3.2 32 184-215 18-49 (227)
103 cd03225 ABC_cobalt_CbiO_domain 96.4 0.0028 6E-08 55.0 3.1 31 184-214 19-49 (211)
104 cd03292 ABC_FtsE_transporter F 96.4 0.0029 6.3E-08 54.9 3.1 32 184-215 19-50 (214)
105 cd03269 ABC_putative_ATPase Th 96.3 0.003 6.5E-08 54.9 3.2 31 184-214 18-48 (210)
106 COG3842 PotA ABC-type spermidi 96.3 0.0039 8.4E-08 59.7 4.2 44 170-214 9-53 (352)
107 cd03250 ABCC_MRP_domain1 Domai 96.3 0.0031 6.7E-08 54.6 3.2 32 184-215 23-54 (204)
108 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.3 0.003 6.6E-08 55.0 3.2 31 185-215 23-53 (218)
109 TIGR02315 ABC_phnC phosphonate 96.3 0.0031 6.6E-08 55.9 3.2 31 184-214 20-50 (243)
110 COG4608 AppF ABC-type oligopep 96.3 0.0048 1E-07 57.0 4.5 48 180-228 26-74 (268)
111 cd03262 ABC_HisP_GlnQ_permease 96.3 0.0032 6.9E-08 54.6 3.2 32 184-215 18-49 (213)
112 PRK04301 radA DNA repair and r 96.3 0.0061 1.3E-07 56.9 5.3 58 174-231 82-146 (317)
113 COG4619 ABC-type uncharacteriz 96.3 0.0032 6.8E-08 55.3 3.1 30 186-215 23-52 (223)
114 cd03265 ABC_DrrA DrrA is the A 96.3 0.0032 7E-08 55.1 3.2 31 184-214 18-48 (220)
115 cd03224 ABC_TM1139_LivF_branch 96.3 0.0031 6.6E-08 55.1 3.0 31 184-214 18-48 (222)
116 TIGR00960 3a0501s02 Type II (G 96.3 0.0033 7.1E-08 54.8 3.2 31 184-214 21-51 (216)
117 TIGR03608 L_ocin_972_ABC putat 96.3 0.0032 6.9E-08 54.3 3.0 31 184-214 16-46 (206)
118 cd03258 ABC_MetN_methionine_tr 96.3 0.0032 7E-08 55.5 3.2 30 186-215 25-54 (233)
119 PF03796 DnaB_C: DnaB-like hel 96.3 0.0053 1.1E-07 55.3 4.6 58 176-234 2-60 (259)
120 cd03219 ABC_Mj1267_LivG_branch 96.3 0.0031 6.7E-08 55.7 2.9 29 186-214 20-48 (236)
121 TIGR03410 urea_trans_UrtE urea 96.3 0.0034 7.3E-08 55.3 3.1 31 184-214 18-48 (230)
122 cd03256 ABC_PhnC_transporter A 96.3 0.0035 7.5E-08 55.4 3.2 31 185-215 20-50 (241)
123 cd03257 ABC_NikE_OppD_transpor 96.2 0.0036 7.9E-08 54.7 3.2 32 184-215 23-54 (228)
124 cd03226 ABC_cobalt_CbiO_domain 96.2 0.0037 8E-08 54.1 3.2 30 185-214 19-48 (205)
125 PRK13540 cytochrome c biogenes 96.2 0.0038 8.3E-08 54.0 3.2 31 184-214 19-49 (200)
126 cd03238 ABC_UvrA The excision 96.2 0.0036 7.8E-08 54.1 3.0 30 184-213 13-42 (176)
127 PRK11124 artP arginine transpo 96.2 0.0038 8.1E-08 55.5 3.3 31 184-214 20-50 (242)
128 cd03296 ABC_CysA_sulfate_impor 96.2 0.0037 8.1E-08 55.5 3.2 32 184-215 20-51 (239)
129 cd03295 ABC_OpuCA_Osmoprotecti 96.2 0.0038 8.2E-08 55.6 3.2 30 185-214 20-49 (242)
130 PRK14247 phosphate ABC transpo 96.2 0.0039 8.4E-08 55.7 3.2 32 184-215 21-52 (250)
131 cd03259 ABC_Carb_Solutes_like 96.2 0.0039 8.5E-08 54.2 3.2 30 185-214 19-48 (213)
132 cd03261 ABC_Org_Solvent_Resist 96.2 0.004 8.6E-08 55.1 3.2 31 184-214 18-48 (235)
133 TIGR03864 PQQ_ABC_ATP ABC tran 96.2 0.004 8.7E-08 55.2 3.2 30 185-214 20-49 (236)
134 cd03218 ABC_YhbG The ABC trans 96.2 0.0041 8.9E-08 54.7 3.2 29 186-214 20-48 (232)
135 cd03216 ABC_Carb_Monos_I This 96.2 0.0041 8.8E-08 52.4 3.1 30 186-215 20-49 (163)
136 TIGR00665 DnaB replicative DNA 96.2 0.008 1.7E-07 58.3 5.5 64 174-237 176-240 (434)
137 PRK14267 phosphate ABC transpo 96.2 0.004 8.7E-08 55.7 3.2 31 184-214 22-52 (253)
138 PRK14255 phosphate ABC transpo 96.2 0.004 8.7E-08 55.7 3.1 31 184-214 23-53 (252)
139 cd03230 ABC_DR_subfamily_A Thi 96.2 0.0041 8.9E-08 52.7 3.1 30 185-214 19-48 (173)
140 cd03235 ABC_Metallic_Cations A 96.2 0.0038 8.3E-08 54.3 2.9 30 185-214 18-47 (213)
141 cd03293 ABC_NrtD_SsuB_transpor 96.2 0.0038 8.3E-08 54.6 3.0 30 185-214 23-52 (220)
142 PRK13539 cytochrome c biogenes 96.2 0.0042 9E-08 54.1 3.1 32 184-215 20-51 (207)
143 TIGR01978 sufC FeS assembly AT 96.2 0.0043 9.3E-08 54.9 3.2 31 184-214 18-48 (243)
144 cd03298 ABC_ThiQ_thiamine_tran 96.2 0.0042 9.2E-08 53.9 3.1 33 183-215 15-47 (211)
145 cd03251 ABCC_MsbA MsbA is an e 96.1 0.0043 9.3E-08 54.7 3.2 31 184-214 20-50 (234)
146 cd03266 ABC_NatA_sodium_export 96.1 0.0042 9.1E-08 54.1 3.1 31 185-215 24-54 (218)
147 cd00984 DnaB_C DnaB helicase C 96.1 0.01 2.2E-07 52.3 5.6 50 189-238 10-59 (242)
148 PF00005 ABC_tran: ABC transpo 96.1 0.0035 7.6E-08 50.3 2.4 29 187-215 6-34 (137)
149 PRK14274 phosphate ABC transpo 96.1 0.0043 9.4E-08 55.8 3.2 31 184-214 30-60 (259)
150 TIGR02673 FtsE cell division A 96.1 0.0046 9.9E-08 53.8 3.2 30 185-214 21-50 (214)
151 cd03252 ABCC_Hemolysin The ABC 96.1 0.0044 9.5E-08 54.8 3.1 32 184-215 20-51 (237)
152 PRK14240 phosphate transporter 96.1 0.0045 9.7E-08 55.3 3.1 31 184-214 21-51 (250)
153 cd03215 ABC_Carb_Monos_II This 96.1 0.0045 9.7E-08 52.9 3.0 32 184-215 18-49 (182)
154 cd03301 ABC_MalK_N The N-termi 96.1 0.0047 1E-07 53.7 3.1 32 184-215 18-49 (213)
155 COG3638 ABC-type phosphate/pho 96.1 0.0081 1.8E-07 54.8 4.7 66 176-242 13-82 (258)
156 cd03245 ABCC_bacteriocin_expor 96.1 0.0046 1E-07 54.0 3.1 30 185-214 23-52 (220)
157 PRK13541 cytochrome c biogenes 96.1 0.0048 1E-07 53.2 3.1 34 182-215 16-49 (195)
158 cd03231 ABC_CcmA_heme_exporter 96.1 0.0048 1E-07 53.5 3.1 32 184-215 18-49 (201)
159 PRK09493 glnQ glutamine ABC tr 96.1 0.0049 1.1E-07 54.7 3.2 32 184-215 19-50 (240)
160 cd03247 ABCC_cytochrome_bd The 96.1 0.0051 1.1E-07 52.3 3.2 32 184-215 20-51 (178)
161 PRK11248 tauB taurine transpor 96.1 0.0049 1.1E-07 55.7 3.2 31 184-214 19-49 (255)
162 PRK11701 phnK phosphonate C-P 96.1 0.0047 1E-07 55.5 3.1 32 184-215 24-55 (258)
163 PRK10895 lipopolysaccharide AB 96.1 0.0051 1.1E-07 54.6 3.3 32 184-215 21-52 (241)
164 PRK10575 iron-hydroxamate tran 96.1 0.0046 9.9E-08 56.0 3.0 31 184-214 29-59 (265)
165 PRK14250 phosphate ABC transpo 96.1 0.005 1.1E-07 54.9 3.2 31 184-214 21-51 (241)
166 PRK11264 putative amino-acid A 96.1 0.0051 1.1E-07 54.9 3.2 31 184-214 21-51 (250)
167 PF13207 AAA_17: AAA domain; P 96.1 0.0059 1.3E-07 47.9 3.3 22 194-215 1-22 (121)
168 PRK13543 cytochrome c biogenes 96.0 0.0051 1.1E-07 53.9 3.1 31 184-214 29-59 (214)
169 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.0 0.0049 1.1E-07 54.5 3.0 32 184-215 21-52 (238)
170 cd03223 ABCD_peroxisomal_ALDP 96.0 0.0056 1.2E-07 51.7 3.2 32 184-215 19-50 (166)
171 cd03236 ABC_RNaseL_inhibitor_d 96.0 0.0058 1.3E-07 55.5 3.5 34 182-215 16-49 (255)
172 PRK11629 lolD lipoprotein tran 96.0 0.0054 1.2E-07 54.2 3.2 31 184-214 27-57 (233)
173 PRK10584 putative ABC transpor 96.0 0.0054 1.2E-07 53.9 3.1 31 184-214 28-58 (228)
174 cd03290 ABCC_SUR1_N The SUR do 96.0 0.0054 1.2E-07 53.6 3.1 28 187-214 22-49 (218)
175 cd03214 ABC_Iron-Siderophores_ 96.0 0.0056 1.2E-07 52.2 3.1 31 184-214 17-47 (180)
176 cd03263 ABC_subfamily_A The AB 96.0 0.0055 1.2E-07 53.5 3.1 31 184-214 20-50 (220)
177 PRK14273 phosphate ABC transpo 96.0 0.0056 1.2E-07 54.8 3.2 31 185-215 26-56 (254)
178 TIGR03005 ectoine_ehuA ectoine 96.0 0.0056 1.2E-07 54.8 3.2 31 184-214 18-48 (252)
179 TIGR03411 urea_trans_UrtD urea 96.0 0.0057 1.2E-07 54.3 3.1 31 185-215 21-51 (242)
180 cd03246 ABCC_Protease_Secretio 96.0 0.0062 1.4E-07 51.5 3.3 30 186-215 22-51 (173)
181 PRK14241 phosphate transporter 96.0 0.0056 1.2E-07 55.0 3.1 31 184-214 22-52 (258)
182 cd03268 ABC_BcrA_bacitracin_re 96.0 0.0059 1.3E-07 52.9 3.1 32 184-215 18-49 (208)
183 TIGR02770 nickel_nikD nickel i 96.0 0.0057 1.2E-07 54.1 3.1 31 185-215 5-35 (230)
184 PRK15093 antimicrobial peptide 96.0 0.0057 1.2E-07 57.6 3.2 36 180-215 20-56 (330)
185 PRK14242 phosphate transporter 96.0 0.0057 1.2E-07 54.7 3.1 30 185-214 25-54 (253)
186 TIGR02323 CP_lyasePhnK phospho 96.0 0.0057 1.2E-07 54.7 3.1 32 184-215 21-52 (253)
187 cd01124 KaiC KaiC is a circadi 95.9 0.018 4E-07 48.4 6.0 46 195-241 2-47 (187)
188 TIGR01188 drrA daunorubicin re 95.9 0.0059 1.3E-07 56.5 3.2 30 185-214 12-41 (302)
189 cd03248 ABCC_TAP TAP, the Tran 95.9 0.006 1.3E-07 53.5 3.1 29 187-215 35-63 (226)
190 PRK11144 modC molybdate transp 95.9 0.0069 1.5E-07 57.5 3.7 32 183-214 15-46 (352)
191 PRK10253 iron-enterobactin tra 95.9 0.0058 1.2E-07 55.3 3.1 32 184-215 25-56 (265)
192 PRK14262 phosphate ABC transpo 95.9 0.0063 1.4E-07 54.3 3.3 31 184-214 21-51 (250)
193 PRK15177 Vi polysaccharide exp 95.9 0.0063 1.4E-07 53.5 3.2 32 184-215 5-36 (213)
194 PRK10771 thiQ thiamine transpo 95.9 0.0059 1.3E-07 54.0 3.1 31 184-214 17-47 (232)
195 PRK14248 phosphate ABC transpo 95.9 0.006 1.3E-07 55.2 3.1 30 185-214 40-69 (268)
196 PRK10908 cell division protein 95.9 0.0064 1.4E-07 53.3 3.2 30 185-214 21-50 (222)
197 PRK11247 ssuB aliphatic sulfon 95.9 0.0061 1.3E-07 55.4 3.2 31 184-214 30-60 (257)
198 PRK15056 manganese/iron transp 95.9 0.006 1.3E-07 55.5 3.1 31 184-214 25-55 (272)
199 TIGR03740 galliderm_ABC gallid 95.9 0.0062 1.3E-07 53.4 3.1 29 186-214 20-48 (223)
200 TIGR00972 3a0107s01c2 phosphat 95.9 0.0063 1.4E-07 54.3 3.2 31 184-214 19-49 (247)
201 TIGR03771 anch_rpt_ABC anchore 95.9 0.0069 1.5E-07 53.4 3.4 29 187-215 1-29 (223)
202 cd03217 ABC_FeS_Assembly ABC-t 95.9 0.0067 1.4E-07 52.6 3.3 32 184-215 18-49 (200)
203 COG0468 RecA RecA/RadA recombi 95.9 0.0075 1.6E-07 56.1 3.7 57 169-226 35-93 (279)
204 TIGR02324 CP_lyasePhnL phospho 95.9 0.0065 1.4E-07 53.2 3.2 32 184-215 26-57 (224)
205 PRK10851 sulfate/thiosulfate t 95.9 0.006 1.3E-07 58.1 3.2 32 184-215 20-51 (353)
206 TIGR01184 ntrCD nitrate transp 95.9 0.0064 1.4E-07 53.9 3.1 30 186-215 5-34 (230)
207 PRK10247 putative ABC transpor 95.9 0.0065 1.4E-07 53.6 3.2 31 184-214 25-55 (225)
208 PRK14239 phosphate transporter 95.9 0.0064 1.4E-07 54.3 3.1 31 184-214 23-53 (252)
209 PLN03186 DNA repair protein RA 95.9 0.012 2.6E-07 56.2 5.1 70 173-242 102-180 (342)
210 PRK13538 cytochrome c biogenes 95.9 0.0067 1.5E-07 52.6 3.1 32 184-215 19-50 (204)
211 TIGR00968 3a0106s01 sulfate AB 95.9 0.0066 1.4E-07 54.0 3.1 29 187-215 21-49 (237)
212 PRK11432 fbpC ferric transport 95.9 0.0064 1.4E-07 57.9 3.2 31 184-214 24-54 (351)
213 PRK14237 phosphate transporter 95.9 0.0068 1.5E-07 55.0 3.2 31 185-215 39-69 (267)
214 TIGR02237 recomb_radB DNA repa 95.9 0.026 5.6E-07 48.8 6.8 42 189-231 9-50 (209)
215 PRK11831 putative ABC transpor 95.9 0.0065 1.4E-07 55.2 3.1 31 184-214 25-55 (269)
216 TIGR02769 nickel_nikE nickel i 95.9 0.0068 1.5E-07 54.9 3.2 31 184-214 29-59 (265)
217 COG0444 DppD ABC-type dipeptid 95.9 0.0085 1.8E-07 56.6 3.9 36 180-215 18-54 (316)
218 cd03267 ABC_NatA_like Similar 95.9 0.0067 1.5E-07 54.0 3.1 32 184-215 39-70 (236)
219 PRK13648 cbiO cobalt transport 95.8 0.0069 1.5E-07 55.0 3.2 32 184-215 27-58 (269)
220 TIGR02868 CydC thiol reductant 95.8 0.0054 1.2E-07 60.7 2.7 33 184-216 353-385 (529)
221 PRK11650 ugpC glycerol-3-phosp 95.8 0.0067 1.4E-07 57.9 3.2 31 184-214 22-52 (356)
222 PRK14243 phosphate transporter 95.8 0.0072 1.6E-07 54.7 3.3 31 184-214 28-58 (264)
223 PRK13548 hmuV hemin importer A 95.8 0.0069 1.5E-07 54.7 3.1 30 185-214 21-50 (258)
224 TIGR01288 nodI ATP-binding ABC 95.8 0.0068 1.5E-07 56.1 3.1 31 184-214 22-52 (303)
225 COG1127 Ttg2A ABC-type transpo 95.8 0.0063 1.4E-07 55.7 2.8 44 184-227 26-69 (263)
226 TIGR03265 PhnT2 putative 2-ami 95.8 0.0068 1.5E-07 57.8 3.2 32 184-215 22-53 (353)
227 PRK13645 cbiO cobalt transport 95.8 0.0067 1.5E-07 55.7 3.0 30 185-214 30-59 (289)
228 PRK14256 phosphate ABC transpo 95.8 0.0073 1.6E-07 54.1 3.2 30 186-215 24-53 (252)
229 PRK11308 dppF dipeptide transp 95.8 0.007 1.5E-07 57.0 3.2 34 181-214 29-63 (327)
230 PRK13638 cbiO cobalt transport 95.8 0.0066 1.4E-07 55.1 2.9 31 184-214 19-49 (271)
231 KOG0057|consensus 95.8 0.01 2.3E-07 59.6 4.5 36 187-223 373-408 (591)
232 TIGR01189 ccmA heme ABC export 95.8 0.0078 1.7E-07 51.9 3.2 31 184-214 18-48 (198)
233 PRK13641 cbiO cobalt transport 95.8 0.007 1.5E-07 55.6 3.1 31 184-214 25-55 (287)
234 PRK14266 phosphate ABC transpo 95.8 0.0075 1.6E-07 53.8 3.2 31 184-214 21-51 (250)
235 PRK13649 cbiO cobalt transport 95.8 0.007 1.5E-07 55.2 3.0 31 185-215 26-56 (280)
236 PRK09544 znuC high-affinity zi 95.8 0.0074 1.6E-07 54.5 3.2 31 184-214 22-52 (251)
237 PRK14245 phosphate ABC transpo 95.8 0.0074 1.6E-07 54.0 3.1 31 184-214 21-51 (250)
238 PF13481 AAA_25: AAA domain; P 95.8 0.026 5.7E-07 47.8 6.4 67 177-243 15-92 (193)
239 PRK13632 cbiO cobalt transport 95.8 0.0073 1.6E-07 54.9 3.2 30 186-215 29-58 (271)
240 cd03369 ABCC_NFT1 Domain 2 of 95.8 0.0078 1.7E-07 52.2 3.2 32 184-215 26-57 (207)
241 PRK14238 phosphate transporter 95.8 0.0076 1.7E-07 54.9 3.2 32 184-215 42-73 (271)
242 PRK14244 phosphate ABC transpo 95.8 0.0077 1.7E-07 53.9 3.2 32 184-215 23-54 (251)
243 PRK14268 phosphate ABC transpo 95.8 0.0076 1.6E-07 54.3 3.2 31 184-214 30-60 (258)
244 PRK11300 livG leucine/isoleuci 95.8 0.0075 1.6E-07 53.9 3.1 32 184-215 23-54 (255)
245 PRK14272 phosphate ABC transpo 95.8 0.0078 1.7E-07 53.7 3.2 31 184-214 22-52 (252)
246 PRK14249 phosphate ABC transpo 95.8 0.0077 1.7E-07 53.9 3.2 31 184-214 22-52 (251)
247 PRK10418 nikD nickel transport 95.8 0.0075 1.6E-07 54.2 3.1 31 184-214 21-51 (254)
248 PRK08118 topology modulation p 95.8 0.0089 1.9E-07 50.9 3.4 23 193-215 2-24 (167)
249 PF13521 AAA_28: AAA domain; P 95.8 0.014 3E-07 48.7 4.5 36 194-238 1-36 (163)
250 cd03233 ABC_PDR_domain1 The pl 95.8 0.0069 1.5E-07 52.7 2.7 32 184-215 25-56 (202)
251 PRK10744 pstB phosphate transp 95.8 0.0078 1.7E-07 54.3 3.2 31 184-214 31-61 (260)
252 PRK07261 topology modulation p 95.8 0.0084 1.8E-07 51.1 3.2 23 193-215 1-23 (171)
253 PRK09519 recA DNA recombinatio 95.8 0.0097 2.1E-07 62.4 4.2 61 173-234 38-101 (790)
254 TIGR02239 recomb_RAD51 DNA rep 95.8 0.015 3.2E-07 54.8 5.0 44 173-216 75-120 (316)
255 cd03253 ABCC_ATM1_transporter 95.8 0.0081 1.7E-07 53.0 3.2 32 184-215 19-50 (236)
256 cd03228 ABCC_MRP_Like The MRP 95.8 0.0085 1.8E-07 50.6 3.2 30 186-215 22-51 (171)
257 PRK14269 phosphate ABC transpo 95.8 0.008 1.7E-07 53.7 3.2 31 184-214 20-50 (246)
258 PRK14253 phosphate ABC transpo 95.7 0.0083 1.8E-07 53.5 3.2 30 185-214 22-51 (249)
259 CHL00131 ycf16 sulfate ABC tra 95.7 0.0074 1.6E-07 53.9 2.9 31 184-214 25-55 (252)
260 cd03213 ABCG_EPDR ABCG transpo 95.7 0.0081 1.8E-07 51.9 3.1 32 184-215 27-58 (194)
261 PRK10419 nikE nickel transport 95.7 0.0079 1.7E-07 54.7 3.1 31 184-214 30-60 (268)
262 cd03270 ABC_UvrA_I The excisio 95.7 0.0088 1.9E-07 53.2 3.3 25 185-209 14-38 (226)
263 PRK14271 phosphate ABC transpo 95.7 0.0083 1.8E-07 54.9 3.2 32 184-215 39-70 (276)
264 PRK14270 phosphate ABC transpo 95.7 0.0086 1.9E-07 53.6 3.2 30 185-214 23-52 (251)
265 cd03264 ABC_drug_resistance_li 95.7 0.0078 1.7E-07 52.3 2.9 30 184-214 18-47 (211)
266 PRK10619 histidine/lysine/argi 95.7 0.0084 1.8E-07 53.9 3.1 32 184-215 23-54 (257)
267 PRK15079 oligopeptide ABC tran 95.7 0.0081 1.8E-07 56.7 3.1 34 181-214 35-69 (331)
268 PRK09473 oppD oligopeptide tra 95.7 0.0079 1.7E-07 56.7 3.0 35 180-214 29-64 (330)
269 PRK14261 phosphate ABC transpo 95.7 0.0086 1.9E-07 53.6 3.2 30 185-214 25-54 (253)
270 cd03237 ABC_RNaseL_inhibitor_d 95.7 0.0098 2.1E-07 53.7 3.5 27 188-214 21-47 (246)
271 PRK13646 cbiO cobalt transport 95.7 0.0083 1.8E-07 55.1 3.1 32 184-215 25-56 (286)
272 PRK11614 livF leucine/isoleuci 95.7 0.0079 1.7E-07 53.2 2.8 30 185-214 24-53 (237)
273 cd03294 ABC_Pro_Gly_Bertaine T 95.7 0.0088 1.9E-07 54.4 3.2 32 184-215 42-73 (269)
274 cd03234 ABCG_White The White s 95.7 0.0086 1.9E-07 52.7 3.0 32 184-215 25-56 (226)
275 PRK11022 dppD dipeptide transp 95.7 0.0086 1.9E-07 56.3 3.2 35 181-215 21-56 (326)
276 PRK14263 phosphate ABC transpo 95.7 0.013 2.8E-07 53.1 4.2 31 184-214 26-56 (261)
277 PRK14251 phosphate ABC transpo 95.7 0.0093 2E-07 53.3 3.2 31 184-214 22-52 (251)
278 TIGR01277 thiQ thiamine ABC tr 95.7 0.0089 1.9E-07 52.2 3.0 32 184-215 16-47 (213)
279 COG1136 SalX ABC-type antimicr 95.7 0.0089 1.9E-07 54.0 3.1 62 180-242 18-83 (226)
280 PRK13643 cbiO cobalt transport 95.7 0.0086 1.9E-07 55.1 3.1 31 184-214 24-54 (288)
281 PRK13547 hmuV hemin importer A 95.7 0.0088 1.9E-07 54.8 3.1 31 184-214 19-49 (272)
282 PRK09452 potA putrescine/sperm 95.6 0.0085 1.8E-07 57.7 3.1 31 184-214 32-62 (375)
283 PRK09984 phosphonate/organopho 95.6 0.0091 2E-07 53.8 3.1 31 184-214 22-52 (262)
284 PRK14275 phosphate ABC transpo 95.6 0.0092 2E-07 54.9 3.1 31 184-214 57-87 (286)
285 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.6 0.0095 2.1E-07 52.7 3.1 32 184-215 40-71 (224)
286 PRK14265 phosphate ABC transpo 95.6 0.0098 2.1E-07 54.3 3.3 31 184-214 38-68 (274)
287 PRK13651 cobalt transporter AT 95.6 0.009 2E-07 55.7 3.1 31 184-214 25-55 (305)
288 PRK14259 phosphate ABC transpo 95.6 0.0093 2E-07 54.2 3.1 31 184-214 31-61 (269)
289 COG1126 GlnQ ABC-type polar am 95.6 0.0097 2.1E-07 53.8 3.1 41 187-228 23-63 (240)
290 cd03299 ABC_ModC_like Archeal 95.6 0.0096 2.1E-07 52.9 3.1 31 184-214 17-47 (235)
291 cd03244 ABCC_MRP_domain2 Domai 95.6 0.01 2.2E-07 51.9 3.2 32 184-215 22-53 (221)
292 PRK14235 phosphate transporter 95.6 0.01 2.2E-07 53.9 3.3 32 184-215 37-68 (267)
293 PRK13647 cbiO cobalt transport 95.6 0.0098 2.1E-07 54.3 3.2 30 185-214 24-53 (274)
294 TIGR02314 ABC_MetN D-methionin 95.6 0.0094 2E-07 56.7 3.1 31 184-214 23-53 (343)
295 cd03300 ABC_PotA_N PotA is an 95.6 0.01 2.3E-07 52.5 3.2 32 184-215 18-49 (232)
296 PRK14260 phosphate ABC transpo 95.6 0.0098 2.1E-07 53.6 3.1 32 184-215 25-56 (259)
297 cd03288 ABCC_SUR2 The SUR doma 95.6 0.011 2.3E-07 53.4 3.3 30 186-215 41-70 (257)
298 PF05496 RuvB_N: Holliday junc 95.6 0.017 3.7E-07 52.4 4.5 52 195-249 53-105 (233)
299 COG3839 MalK ABC-type sugar tr 95.6 0.0099 2.1E-07 56.7 3.1 31 184-214 21-51 (338)
300 PRK13546 teichoic acids export 95.6 0.01 2.2E-07 54.2 3.1 31 184-214 42-72 (264)
301 PRK11231 fecE iron-dicitrate t 95.6 0.011 2.3E-07 53.2 3.2 29 186-214 22-50 (255)
302 PRK13637 cbiO cobalt transport 95.6 0.01 2.2E-07 54.6 3.1 31 184-214 25-55 (287)
303 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.6 0.01 2.3E-07 49.0 2.9 29 187-215 21-49 (144)
304 PRK13639 cbiO cobalt transport 95.5 0.01 2.2E-07 54.2 3.1 31 184-214 20-50 (275)
305 PRK14254 phosphate ABC transpo 95.5 0.011 2.3E-07 54.5 3.2 31 184-214 57-87 (285)
306 PRK15112 antimicrobial peptide 95.5 0.011 2.3E-07 53.7 3.2 32 184-215 31-62 (267)
307 PRK14252 phosphate ABC transpo 95.5 0.011 2.4E-07 53.5 3.2 31 184-214 34-64 (265)
308 PRK11000 maltose/maltodextrin 95.5 0.01 2.2E-07 56.8 3.1 31 184-214 21-51 (369)
309 COG4172 ABC-type uncharacteriz 95.5 0.011 2.3E-07 58.0 3.3 47 180-228 300-347 (534)
310 PRK05748 replicative DNA helic 95.5 0.019 4.1E-07 56.2 5.1 63 174-236 184-247 (448)
311 cd03232 ABC_PDR_domain2 The pl 95.5 0.011 2.3E-07 51.1 2.9 28 187-214 28-55 (192)
312 COG4987 CydC ABC-type transpor 95.5 0.01 2.2E-07 59.6 3.2 33 184-216 356-388 (573)
313 PRK13640 cbiO cobalt transport 95.5 0.011 2.3E-07 54.3 3.1 31 184-214 25-55 (282)
314 TIGR02982 heterocyst_DevA ABC 95.5 0.012 2.5E-07 51.7 3.2 31 184-214 23-53 (220)
315 PRK14264 phosphate ABC transpo 95.5 0.011 2.4E-07 54.9 3.2 31 184-214 63-93 (305)
316 PRK13650 cbiO cobalt transport 95.5 0.011 2.3E-07 54.2 3.1 31 184-214 25-55 (279)
317 PRK09580 sufC cysteine desulfu 95.5 0.011 2.3E-07 52.6 2.9 30 186-215 21-50 (248)
318 COG4181 Predicted ABC-type tra 95.5 0.011 2.4E-07 52.1 2.9 27 187-213 31-57 (228)
319 TIGR02142 modC_ABC molybdenum 95.5 0.013 2.9E-07 55.6 3.8 31 184-214 15-45 (354)
320 cd03291 ABCC_CFTR1 The CFTR su 95.5 0.011 2.5E-07 54.5 3.2 32 184-215 55-86 (282)
321 cd00267 ABC_ATPase ABC (ATP-bi 95.5 0.012 2.7E-07 48.7 3.1 32 184-215 17-48 (157)
322 PRK05973 replicative DNA helic 95.5 0.046 1E-06 49.6 7.0 55 189-247 61-115 (237)
323 TIGR03522 GldA_ABC_ATP gliding 95.5 0.011 2.4E-07 54.7 3.1 31 184-214 20-50 (301)
324 PRK14236 phosphate transporter 95.4 0.012 2.6E-07 53.5 3.2 31 184-214 43-73 (272)
325 COG1134 TagH ABC-type polysacc 95.4 0.012 2.5E-07 53.8 3.1 31 184-214 45-75 (249)
326 PRK14246 phosphate ABC transpo 95.4 0.012 2.6E-07 53.2 3.1 32 184-215 28-59 (257)
327 PRK13644 cbiO cobalt transport 95.4 0.012 2.6E-07 53.7 3.1 32 184-215 20-51 (274)
328 PRK03695 vitamin B12-transport 95.4 0.011 2.4E-07 53.0 2.8 31 184-214 14-44 (248)
329 COG1135 AbcC ABC-type metal io 95.4 0.025 5.4E-07 53.5 5.2 63 179-242 18-84 (339)
330 cd03289 ABCC_CFTR2 The CFTR su 95.4 0.013 2.7E-07 54.1 3.2 29 187-215 25-53 (275)
331 TIGR03873 F420-0_ABC_ATP propo 95.4 0.012 2.6E-07 52.8 3.0 29 186-214 21-49 (256)
332 PRK13634 cbiO cobalt transport 95.4 0.012 2.7E-07 54.1 3.1 30 186-215 27-56 (290)
333 TIGR03600 phage_DnaB phage rep 95.4 0.024 5.2E-07 54.9 5.2 44 174-217 175-219 (421)
334 cd03297 ABC_ModC_molybdenum_tr 95.4 0.014 3.1E-07 50.8 3.3 30 184-214 16-45 (214)
335 PRK13635 cbiO cobalt transport 95.4 0.013 2.8E-07 53.7 3.2 31 184-214 25-55 (279)
336 PF00308 Bac_DnaA: Bacterial d 95.4 0.018 3.9E-07 51.2 3.9 57 193-249 35-101 (219)
337 PRK14258 phosphate ABC transpo 95.4 0.013 2.9E-07 52.8 3.1 32 184-215 25-56 (261)
338 PF08423 Rad51: Rad51; InterP 95.4 0.0083 1.8E-07 54.7 1.8 45 172-216 16-62 (256)
339 PRK11153 metN DL-methionine tr 95.3 0.013 2.8E-07 55.5 3.1 31 184-214 23-53 (343)
340 PRK11607 potG putrescine trans 95.3 0.013 2.9E-07 56.3 3.1 31 184-214 37-67 (377)
341 PRK13536 nodulation factor exp 95.3 0.014 3E-07 55.4 3.2 35 181-215 55-90 (340)
342 PF08477 Miro: Miro-like prote 95.3 0.018 3.9E-07 44.7 3.3 22 194-215 1-22 (119)
343 PRK13631 cbiO cobalt transport 95.3 0.014 3E-07 54.8 3.2 28 187-214 47-74 (320)
344 PRK13537 nodulation ABC transp 95.3 0.014 3E-07 54.4 3.1 32 184-215 25-56 (306)
345 TIGR03258 PhnT 2-aminoethylpho 95.3 0.014 3.1E-07 55.9 3.2 31 184-214 23-53 (362)
346 PRK13642 cbiO cobalt transport 95.3 0.014 3.1E-07 53.2 3.2 33 182-214 22-55 (277)
347 COG4167 SapF ABC-type antimicr 95.3 0.014 2.9E-07 52.1 2.8 28 187-214 34-61 (267)
348 PRK11176 lipid transporter ATP 95.3 0.015 3.2E-07 58.3 3.4 32 184-215 361-392 (582)
349 COG1125 OpuBA ABC-type proline 95.3 0.026 5.6E-07 52.4 4.7 63 179-242 13-76 (309)
350 PRK13652 cbiO cobalt transport 95.2 0.015 3.3E-07 53.0 3.2 32 184-215 22-53 (277)
351 PRK11174 cysteine/glutathione 95.2 0.013 2.8E-07 58.8 2.9 33 184-216 368-400 (588)
352 TIGR01193 bacteriocin_ABC ABC- 95.2 0.014 3E-07 60.1 3.1 32 184-215 492-523 (708)
353 COG1120 FepC ABC-type cobalami 95.2 0.015 3.3E-07 53.5 3.0 32 184-215 20-51 (258)
354 PRK13633 cobalt transporter AT 95.2 0.016 3.4E-07 53.0 3.1 32 184-215 28-59 (280)
355 PF13401 AAA_22: AAA domain; P 95.2 0.035 7.7E-07 43.8 4.8 51 192-244 4-59 (131)
356 PRK10636 putative ABC transpor 95.2 0.014 3.1E-07 59.7 3.0 31 184-214 19-49 (638)
357 PRK14257 phosphate ABC transpo 95.2 0.015 3.2E-07 54.9 3.0 32 184-215 100-131 (329)
358 TIGR01186 proV glycine betaine 95.2 0.015 3.3E-07 55.7 3.1 32 184-215 11-42 (363)
359 PRK10790 putative multidrug tr 95.2 0.014 3.1E-07 58.6 2.9 32 184-215 359-390 (592)
360 TIGR03269 met_CoM_red_A2 methy 95.2 0.015 3.3E-07 57.6 3.2 32 184-215 18-49 (520)
361 PF13238 AAA_18: AAA domain; P 95.2 0.019 4E-07 44.9 3.1 21 195-215 1-21 (129)
362 PLN03073 ABC transporter F fam 95.1 0.014 3E-07 60.8 2.9 31 184-214 195-225 (718)
363 PRK08084 DNA replication initi 95.1 0.024 5.2E-07 50.8 4.0 37 192-229 45-81 (235)
364 TIGR02857 CydD thiol reductant 95.1 0.02 4.4E-07 56.6 3.7 33 184-216 340-372 (529)
365 TIGR03796 NHPM_micro_ABC1 NHPM 95.1 0.015 3.2E-07 59.8 2.8 33 184-216 497-529 (710)
366 PF13245 AAA_19: Part of AAA d 95.1 0.033 7.1E-07 41.7 4.0 51 192-243 9-62 (76)
367 PRK11147 ABC transporter ATPas 95.1 0.016 3.4E-07 59.2 2.9 31 184-214 21-51 (635)
368 COG3840 ThiQ ABC-type thiamine 95.0 0.019 4.2E-07 51.0 3.1 29 187-216 20-48 (231)
369 TIGR00235 udk uridine kinase. 95.0 0.02 4.3E-07 49.9 3.2 25 191-215 5-29 (207)
370 PRK00300 gmk guanylate kinase; 95.0 0.022 4.7E-07 49.1 3.4 26 190-215 3-28 (205)
371 PRK10762 D-ribose transporter 95.0 0.017 3.7E-07 57.1 3.0 32 184-215 22-53 (501)
372 PRK08727 hypothetical protein; 95.0 0.044 9.4E-07 49.0 5.4 57 193-250 42-98 (233)
373 PRK15064 ABC transporter ATP-b 95.0 0.018 3.9E-07 57.3 3.1 33 182-214 16-49 (530)
374 PRK13636 cbiO cobalt transport 95.0 0.02 4.3E-07 52.5 3.2 31 184-214 24-54 (283)
375 cd00009 AAA The AAA+ (ATPases 95.0 0.066 1.4E-06 41.5 5.7 26 191-216 18-43 (151)
376 COG1123 ATPase components of v 95.0 0.026 5.6E-07 56.9 4.1 48 180-228 304-352 (539)
377 PHA02542 41 41 helicase; Provi 95.0 0.031 6.8E-07 55.5 4.7 46 173-218 169-216 (473)
378 PRK10522 multidrug transporter 94.9 0.023 5E-07 56.7 3.7 32 184-215 341-372 (547)
379 PRK10789 putative multidrug tr 94.9 0.019 4.2E-07 57.6 3.1 33 184-216 333-365 (569)
380 TIGR03797 NHPM_micro_ABC2 NHPM 94.9 0.017 3.7E-07 59.2 2.8 33 184-216 471-503 (686)
381 TIGR02204 MsbA_rel ABC transpo 94.9 0.022 4.7E-07 56.9 3.5 33 184-216 358-390 (576)
382 PF05729 NACHT: NACHT domain 94.9 0.047 1E-06 44.3 4.9 42 194-235 2-48 (166)
383 TIGR03375 type_I_sec_LssB type 94.9 0.018 3.8E-07 59.2 2.9 32 184-215 483-514 (694)
384 PRK10938 putative molybdenum t 94.9 0.02 4.3E-07 56.3 3.1 33 182-214 18-51 (490)
385 TIGR03263 guanyl_kin guanylate 94.9 0.022 4.7E-07 48.0 2.9 23 192-214 1-23 (180)
386 PRK11160 cysteine/glutathione 94.9 0.026 5.7E-07 56.8 4.0 33 184-216 358-390 (574)
387 PRK08233 hypothetical protein; 94.9 0.026 5.7E-07 47.2 3.4 26 191-216 2-27 (182)
388 PRK11819 putative ABC transpor 94.9 0.02 4.4E-07 57.4 3.1 34 181-214 21-55 (556)
389 PF12846 AAA_10: AAA-like doma 94.8 0.065 1.4E-06 47.8 6.1 44 195-242 4-47 (304)
390 PRK09536 btuD corrinoid ABC tr 94.8 0.021 4.6E-07 55.5 3.1 31 184-214 21-51 (402)
391 TIGR02633 xylG D-xylose ABC tr 94.8 0.02 4.3E-07 56.4 2.9 31 184-214 19-49 (500)
392 PRK15134 microcin C ABC transp 94.8 0.021 4.6E-07 56.8 3.1 32 184-215 27-58 (529)
393 TIGR03420 DnaA_homol_Hda DnaA 94.8 0.024 5.2E-07 49.3 3.1 27 189-215 35-61 (226)
394 PRK08506 replicative DNA helic 94.8 0.037 8E-07 54.8 4.7 44 175-218 174-218 (472)
395 COG4525 TauB ABC-type taurine 94.8 0.027 5.8E-07 50.7 3.3 31 184-214 23-53 (259)
396 TIGR02203 MsbA_lipidA lipid A 94.8 0.025 5.5E-07 56.3 3.5 32 184-215 350-381 (571)
397 TIGR01842 type_I_sec_PrtD type 94.8 0.02 4.4E-07 57.1 2.8 33 184-216 336-368 (544)
398 PRK15064 ABC transporter ATP-b 94.7 0.023 4.9E-07 56.6 3.1 31 184-214 337-367 (530)
399 PRK10261 glutathione transport 94.7 0.023 5.1E-07 57.9 3.2 35 181-215 30-65 (623)
400 COG1132 MdlB ABC-type multidru 94.7 0.024 5.2E-07 56.7 3.2 32 185-216 348-379 (567)
401 PRK13549 xylose transporter AT 94.7 0.022 4.7E-07 56.3 2.9 30 185-214 24-53 (506)
402 PF01695 IstB_IS21: IstB-like 94.7 0.082 1.8E-06 45.6 6.1 49 189-245 44-92 (178)
403 PRK09165 replicative DNA helic 94.7 0.051 1.1E-06 54.3 5.4 46 174-219 198-244 (497)
404 PRK05595 replicative DNA helic 94.7 0.047 1E-06 53.4 5.1 47 174-220 182-229 (444)
405 COG0563 Adk Adenylate kinase a 94.7 0.029 6.3E-07 48.6 3.3 54 194-248 2-57 (178)
406 PRK09700 D-allose transporter 94.7 0.023 5E-07 56.2 2.9 30 185-214 282-311 (510)
407 PRK10078 ribose 1,5-bisphospho 94.7 0.028 6.1E-07 48.2 3.1 24 191-214 1-24 (186)
408 PF03308 ArgK: ArgK protein; 94.7 0.053 1.2E-06 50.1 5.1 45 183-227 19-64 (266)
409 PRK10636 putative ABC transpor 94.7 0.024 5.3E-07 58.0 3.1 31 184-214 330-360 (638)
410 COG2274 SunT ABC-type bacterio 94.6 0.024 5.2E-07 59.0 3.1 32 184-215 491-522 (709)
411 TIGR02322 phosphon_PhnN phosph 94.6 0.033 7.1E-07 47.0 3.4 24 192-215 1-24 (179)
412 PRK10070 glycine betaine trans 94.6 0.025 5.5E-07 55.0 3.0 32 184-215 46-77 (400)
413 PF00154 RecA: recA bacterial 94.6 0.03 6.5E-07 53.1 3.4 77 173-250 31-133 (322)
414 cd02025 PanK Pantothenate kina 94.6 0.052 1.1E-06 48.3 4.8 22 195-216 2-23 (220)
415 PRK09700 D-allose transporter 94.6 0.024 5.2E-07 56.0 2.9 31 184-214 23-53 (510)
416 PRK06217 hypothetical protein; 94.6 0.032 7E-07 47.7 3.3 23 193-215 2-24 (183)
417 TIGR02633 xylG D-xylose ABC tr 94.6 0.024 5.3E-07 55.8 2.9 34 181-214 274-308 (500)
418 PRK08760 replicative DNA helic 94.6 0.047 1E-06 54.2 4.9 45 175-219 211-256 (476)
419 PRK05480 uridine/cytidine kina 94.6 0.033 7.2E-07 48.4 3.4 27 190-216 4-30 (209)
420 PF01926 MMR_HSR1: 50S ribosom 94.6 0.031 6.6E-07 43.7 2.9 21 194-214 1-21 (116)
421 COG4136 ABC-type uncharacteriz 94.6 0.03 6.5E-07 48.5 3.0 32 185-216 21-52 (213)
422 TIGR01194 cyc_pep_trnsptr cycl 94.6 0.021 4.6E-07 57.2 2.4 32 185-216 361-392 (555)
423 TIGR00958 3a01208 Conjugate Tr 94.6 0.028 6.1E-07 58.1 3.4 33 184-216 499-531 (711)
424 COG1122 CbiO ABC-type cobalt t 94.6 0.028 6.1E-07 50.9 3.0 30 184-213 22-51 (235)
425 TIGR03719 ABC_ABC_ChvD ATP-bin 94.6 0.027 5.9E-07 56.4 3.2 31 184-214 23-53 (552)
426 PF00004 AAA: ATPase family as 94.5 0.038 8.2E-07 43.3 3.3 22 195-216 1-22 (132)
427 PRK10982 galactose/methyl gala 94.5 0.027 5.8E-07 55.5 2.9 31 184-214 16-46 (491)
428 PTZ00243 ABC transporter; Prov 94.5 0.032 7E-07 62.7 3.9 45 184-229 1328-1372(1560)
429 COG0488 Uup ATPase components 94.5 0.03 6.4E-07 56.5 3.2 31 184-214 21-51 (530)
430 PRK14531 adenylate kinase; Pro 94.5 0.038 8.3E-07 47.3 3.5 24 193-216 3-26 (183)
431 PRK11147 ABC transporter ATPas 94.5 0.028 6.1E-07 57.4 3.1 30 185-214 338-367 (635)
432 TIGR03415 ABC_choXWV_ATP choli 94.4 0.031 6.7E-07 54.1 3.1 33 183-215 41-73 (382)
433 TIGR01192 chvA glucan exporter 94.4 0.027 5.8E-07 56.9 2.8 32 184-215 353-384 (585)
434 TIGR03269 met_CoM_red_A2 methy 94.4 0.031 6.7E-07 55.4 3.2 34 181-214 298-332 (520)
435 PRK09183 transposase/IS protei 94.4 0.048 1E-06 49.8 4.2 33 183-215 93-125 (259)
436 PRK15439 autoinducer 2 ABC tra 94.4 0.03 6.6E-07 55.5 3.1 31 184-214 29-59 (510)
437 PRK06893 DNA replication initi 94.4 0.057 1.2E-06 48.1 4.6 23 194-216 41-63 (229)
438 COG1131 CcmA ABC-type multidru 94.4 0.033 7.1E-07 51.8 3.1 36 180-215 18-54 (293)
439 PRK14530 adenylate kinase; Pro 94.4 0.043 9.3E-07 48.1 3.7 26 191-216 2-27 (215)
440 PRK05642 DNA replication initi 94.4 0.067 1.5E-06 47.9 5.0 55 194-249 47-101 (234)
441 TIGR00750 lao LAO/AO transport 94.4 0.078 1.7E-06 49.2 5.5 31 187-217 29-59 (300)
442 PRK10762 D-ribose transporter 94.4 0.03 6.6E-07 55.3 2.9 31 184-214 270-300 (501)
443 PRK13657 cyclic beta-1,2-gluca 94.4 0.03 6.5E-07 56.3 2.9 32 184-215 353-384 (588)
444 COG4988 CydD ABC-type transpor 94.3 0.043 9.3E-07 55.4 3.9 33 183-215 338-370 (559)
445 PRK13549 xylose transporter AT 94.3 0.032 6.9E-07 55.2 3.0 35 180-214 275-310 (506)
446 PRK10938 putative molybdenum t 94.3 0.033 7.2E-07 54.7 3.1 31 184-214 278-308 (490)
447 PRK08840 replicative DNA helic 94.3 0.05 1.1E-06 53.9 4.3 46 174-219 198-244 (464)
448 PRK10416 signal recognition pa 94.3 0.077 1.7E-06 50.1 5.3 28 190-217 112-139 (318)
449 COG0488 Uup ATPase components 94.3 0.034 7.4E-07 56.0 3.1 31 184-214 340-370 (530)
450 PRK07004 replicative DNA helic 94.3 0.071 1.5E-06 52.7 5.3 46 175-220 195-241 (460)
451 PRK13409 putative ATPase RIL; 94.3 0.045 9.9E-07 55.7 4.0 33 182-214 89-121 (590)
452 PRK10261 glutathione transport 94.3 0.036 7.7E-07 56.6 3.3 35 180-214 337-372 (623)
453 TIGR01846 type_I_sec_HlyB type 94.2 0.045 9.7E-07 56.3 4.0 33 184-216 475-507 (694)
454 PRK11288 araG L-arabinose tran 94.2 0.031 6.7E-07 55.2 2.7 30 185-214 272-301 (501)
455 COG4586 ABC-type uncharacteriz 94.2 0.033 7.2E-07 52.1 2.7 53 181-234 39-92 (325)
456 PF13173 AAA_14: AAA domain 94.2 0.05 1.1E-06 43.8 3.5 44 193-237 3-46 (128)
457 PF04665 Pox_A32: Poxvirus A32 94.2 0.071 1.5E-06 48.6 4.8 43 193-237 14-56 (241)
458 PF03193 DUF258: Protein of un 94.2 0.023 4.9E-07 48.8 1.5 33 182-214 25-57 (161)
459 PRK11288 araG L-arabinose tran 94.2 0.035 7.6E-07 54.9 3.0 31 184-214 22-52 (501)
460 PRK09825 idnK D-gluconate kina 94.2 0.048 1E-06 46.9 3.4 25 191-215 2-26 (176)
461 PRK14722 flhF flagellar biosyn 94.1 0.08 1.7E-06 51.2 5.3 45 173-217 117-162 (374)
462 PRK07773 replicative DNA helic 94.1 0.084 1.8E-06 56.2 5.8 48 174-221 198-246 (886)
463 PF13086 AAA_11: AAA domain; P 94.1 0.086 1.9E-06 45.0 4.8 50 195-245 20-75 (236)
464 PRK15134 microcin C ABC transp 94.1 0.04 8.7E-07 54.8 3.1 35 181-215 300-335 (529)
465 COG2255 RuvB Holliday junction 94.1 0.056 1.2E-06 50.8 3.8 54 194-249 54-107 (332)
466 cd04155 Arl3 Arl3 subfamily. 94.0 0.044 9.5E-07 45.2 2.9 27 189-215 11-37 (173)
467 cd01130 VirB11-like_ATPase Typ 94.0 0.056 1.2E-06 46.4 3.5 28 189-216 22-49 (186)
468 cd03243 ABC_MutS_homologs The 94.0 0.054 1.2E-06 47.0 3.4 27 189-215 26-52 (202)
469 COG4555 NatA ABC-type Na+ tran 94.0 0.038 8.3E-07 49.7 2.5 32 184-215 20-51 (245)
470 PLN03232 ABC transporter C fam 94.0 0.048 1E-06 61.0 3.8 33 184-216 1254-1286(1495)
471 PHA00729 NTP-binding motif con 93.9 0.026 5.6E-07 51.0 1.4 32 183-215 9-40 (226)
472 PF00931 NB-ARC: NB-ARC domain 93.9 0.13 2.9E-06 46.1 6.0 46 190-235 17-63 (287)
473 PRK05636 replicative DNA helic 93.9 0.1 2.2E-06 52.3 5.7 47 174-220 246-293 (505)
474 PLN03073 ABC transporter F fam 93.9 0.042 9.1E-07 57.2 3.1 31 184-214 527-557 (718)
475 PF07728 AAA_5: AAA domain (dy 93.9 0.14 3E-06 41.3 5.5 42 195-241 2-43 (139)
476 PRK06995 flhF flagellar biosyn 93.9 0.11 2.4E-06 51.8 5.9 46 176-221 239-285 (484)
477 PRK11819 putative ABC transpor 93.9 0.045 9.7E-07 55.0 3.1 31 184-214 342-372 (556)
478 PRK15439 autoinducer 2 ABC tra 93.8 0.042 9.1E-07 54.5 2.8 30 185-214 282-311 (510)
479 PRK06904 replicative DNA helic 93.8 0.064 1.4E-06 53.3 4.0 46 174-219 202-248 (472)
480 cd02023 UMPK Uridine monophosp 93.8 0.053 1.1E-06 46.6 3.0 21 195-215 2-22 (198)
481 PLN03130 ABC transporter C fam 93.8 0.057 1.2E-06 60.9 4.0 45 184-229 1257-1301(1622)
482 cd04138 H_N_K_Ras_like H-Ras/N 93.7 0.052 1.1E-06 43.6 2.7 22 194-215 3-24 (162)
483 PRK09270 nucleoside triphospha 93.7 0.11 2.3E-06 46.2 4.9 29 189-217 30-58 (229)
484 TIGR03719 ABC_ABC_ChvD ATP-bin 93.7 0.046 9.9E-07 54.8 2.8 31 184-214 340-370 (552)
485 TIGR01271 CFTR_protein cystic 93.7 0.055 1.2E-06 60.6 3.7 33 184-216 1237-1269(1490)
486 cd01428 ADK Adenylate kinase ( 93.7 0.054 1.2E-06 45.9 2.9 22 194-215 1-22 (194)
487 PF00910 RNA_helicase: RNA hel 93.6 0.071 1.5E-06 41.8 3.2 23 195-217 1-23 (107)
488 TIGR03499 FlhF flagellar biosy 93.6 0.24 5.1E-06 45.8 7.2 31 189-219 191-221 (282)
489 COG0411 LivG ABC-type branched 93.6 0.023 5E-07 51.9 0.5 50 178-228 15-65 (250)
490 PF14516 AAA_35: AAA-like doma 93.6 0.17 3.7E-06 47.7 6.3 77 158-244 5-86 (331)
491 PRK13545 tagH teichoic acids e 93.6 0.053 1.1E-06 54.8 3.0 31 184-214 42-72 (549)
492 PRK08006 replicative DNA helic 93.6 0.086 1.9E-06 52.4 4.4 45 175-219 206-251 (471)
493 COG1118 CysA ABC-type sulfate/ 93.6 0.061 1.3E-06 51.0 3.2 42 184-226 20-61 (345)
494 TIGR03238 dnd_assoc_3 dnd syst 93.6 0.052 1.1E-06 54.2 2.8 38 173-210 11-50 (504)
495 PRK10982 galactose/methyl gala 93.5 0.049 1.1E-06 53.6 2.7 28 187-214 269-296 (491)
496 cd02019 NK Nucleoside/nucleoti 93.5 0.081 1.7E-06 38.4 3.2 21 195-215 2-22 (69)
497 TIGR00635 ruvB Holliday juncti 93.5 0.12 2.6E-06 47.3 5.0 24 192-215 30-53 (305)
498 TIGR01360 aden_kin_iso1 adenyl 93.5 0.081 1.8E-06 44.5 3.6 24 192-215 3-26 (188)
499 PTZ00301 uridine kinase; Provi 93.5 0.11 2.4E-06 46.1 4.7 22 195-216 6-27 (210)
500 TIGR00231 small_GTP small GTP- 93.5 0.069 1.5E-06 41.8 3.0 23 194-216 3-25 (161)
No 1
>KOG1350|consensus
Probab=100.00 E-value=1.2e-58 Score=426.85 Aligned_cols=216 Identities=83% Similarity=1.251 Sum_probs=212.5
Q ss_pred CccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccC
Q psy17544 50 GKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPV 129 (266)
Q Consensus 50 ~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~Vpv 129 (266)
....|+|++|+|.+++|+|+++.|+|+|.+++.+++.++.+||.+|+|+|+++++.|++|+||.+|++|.++|.|++|||
T Consensus 49 ~~~~G~i~avIGavvDv~F~~~~P~ilNaLev~~~~~~lvlEV~qhlG~n~VR~iAMdgTEGLvRG~~VlDtG~Pi~ipV 128 (521)
T KOG1350|consen 49 KKNKGRIVAVIGAVVDVQFEEGLPPILNALEVKGRDTRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGYPISIPV 128 (521)
T ss_pred cccCCcEEEEEeeeEEEecCCCCcchhhceeecCCCceeeeHHHHHhCcCeEEEEEecCchhhhcCcccccCCCceeeec
Confidence 44689999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHHH
Q psy17544 130 GAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLI 209 (266)
Q Consensus 130 G~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L~ 209 (266)
|++.||||+|.+|+|+|+++|+....+.|||+++|.+.+.....|.|.||||++|+|.|+.||+|||+|||+|+|||+|+
T Consensus 129 G~~tLGRI~NViGePiDerGpi~s~~~~~IHaeaP~f~e~s~~~eIl~TGIKVvDLLAPYakGGKIGLFGGAGVGKTVlI 208 (521)
T KOG1350|consen 129 GPETLGRIMNVIGEPIDERGPIKSKKYSPIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLI 208 (521)
T ss_pred CHHHHhhHHHhcCCcccccCCcccccccccccCChhHhhhcccHHHHhhcceeeeeecccccCCeeeeeccCCccceeeH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 210 MELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 210 ~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
+++|+|.+++|++++||+++|||.||.+|+|+||+|+|||+|++.+||++||||||
T Consensus 209 mELINNiAKaHGGySVF~GvGERTREGNDLY~EM~E~gVI~l~~~~SKvaLV~GQM 264 (521)
T KOG1350|consen 209 MELINNIAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLEGETSKVALVYGQM 264 (521)
T ss_pred HHHHHHHHHhcCCeEEeeccccccccccHHHHHHHhcCeeeccCCcceEEEEeecc
Confidence 99999999999999999999999999999999999999999999999999999999
No 2
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=3.1e-54 Score=403.74 Aligned_cols=208 Identities=69% Similarity=1.098 Sum_probs=199.8
Q ss_pred cccEEEEEECcEEEEEecC--CCcccccEEEEecCCC-ceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCcccc
Q psy17544 52 GNGRVVAVIGAVVDVQFDH--DLPPILNALEVEGRSP-RLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIP 128 (266)
Q Consensus 52 ~~GrV~~I~G~vV~v~~~~--~~p~ig~~~~v~~~~~-~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~Vp 128 (266)
..|+|++|.|+||+|+|+. .+|.|++.++++.... .+.+||.+++|++.|++++|+.++||.+|+.|..||+|++||
T Consensus 2 ~~G~vvqv~g~VvdV~F~~~~~lP~I~naL~~~~~~~~~~~leV~q~lg~~~VR~Iam~~t~gl~rg~~v~dtg~pi~VP 81 (468)
T COG0055 2 NKGKVVQVIGPVVDVEFPEEDELPEIYNALEVQNGNQGTLVLEVAQHLGDNVVRTIAMGSTDGLVRGLEVIDTGKPISVP 81 (468)
T ss_pred CCceEEEEEeeEEEEEecCcccCchhhhhheeccCCcceEeeehHHHhCCCeEEEEEecCccCcccCcEEecCCCceEEe
Confidence 3699999999999999973 5999999999987532 589999999999999999999999999999999999999999
Q ss_pred CChhhhhhhhcccCccccCCCCCCCC--CccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHH
Q psy17544 129 VGAETLGRIINVIGEPIDERGPIDTD--KSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKT 206 (266)
Q Consensus 129 vG~~lLGRViD~~G~PlD~~~~~~~~--~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT 206 (266)
||+.+||||+|++|+|||+.+|+... .+||||.++|...+...-.|.|+||||+||+|.|+.||+|+|+|||+|+|||
T Consensus 82 VG~~~lgri~nvlG~~iD~~~~~~~~~~~~~~Ih~~~p~~~e~~~~~EIleTGIKVIDll~P~~kGgKiGLFGGAGVGKT 161 (468)
T COG0055 82 VGKGTLGRIFNVLGEPIDEKGPIKAEDFEKWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKT 161 (468)
T ss_pred cchhhcccchhccCCcccccCCCCccccceeeccCCCCchhhcccchhhhhhCceEEEEecccccCceeeeeccCCccce
Confidence 99999999999999999999998866 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 207 VLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 207 ~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
+|+++||+|.++.|++++||+++|||.||.+|||+||+++|+++ ||+||||||
T Consensus 162 Vl~~ELI~Nia~~h~g~SVFaGvGERtREGndLy~Em~es~vl~------ktalv~gQM 214 (468)
T COG0055 162 VLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLD------KTALVFGQM 214 (468)
T ss_pred eeHHHHHHHHHHHcCCeEEEEeccccccchHHHHHHHHhcCCCC------ceeEEEeec
Confidence 99999999999999999999999999999999999999999998 999999999
No 3
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=100.00 E-value=2.4e-52 Score=406.50 Aligned_cols=216 Identities=59% Similarity=0.970 Sum_probs=198.5
Q ss_pred CccccEEEEEECcEEEEEecC-CCcccccEEEEecCC--C---ceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCC
Q psy17544 50 GKGNGRVVAVIGAVVDVQFDH-DLPPILNALEVEGRS--P---RLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGN 123 (266)
Q Consensus 50 ~~~~GrV~~I~G~vV~v~~~~-~~p~ig~~~~v~~~~--~---~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~ 123 (266)
.+..|+|++|.|.++++.|+. .+|.+++.|++...+ + .+.+||++|.+++.+++++|++++||+.|++|.++++
T Consensus 13 ~~~~G~V~~v~G~viev~~~~~~iP~ig~~~~i~~~~~~~~~~~~~~EVvg~~~~~~v~~~~l~~~~gi~~G~~V~~tg~ 92 (494)
T CHL00060 13 EKNLGRITQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGA 92 (494)
T ss_pred cccceEEEEEEccEEEEEecCCCcCCcCCEEEEccCCCCCccceEEEEEEEEeCCCeEEEEeccCccCCCCCCEEEeCCC
Confidence 456899999999999999984 578889999995422 2 4789999999879999999999999999999999999
Q ss_pred CccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCc
Q psy17544 124 PIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGV 203 (266)
Q Consensus 124 ~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~ 203 (266)
+++||+|++|||||+|++|+|||+.+++...+++|++..||+|++|.++++||+||||+||+|+|||||||+||||++|+
T Consensus 93 ~~~vpvg~~lLGRVid~~G~piDg~~~~~~~~~~pi~~~~p~~~~R~~i~e~L~TGIraID~l~pigkGQR~gIfgg~Gv 172 (494)
T CHL00060 93 PLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGV 172 (494)
T ss_pred cceeecchhhcCCEEeecCcccCCCCCCCCCccccccCCCcCchhcccccceeecCceeeeccCCcccCCEEeeecCCCC
Confidence 99999999999999999999999998877777889999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCcccc-CCCCCceEEEeecc
Q psy17544 204 GKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISL-KDKSSKVNFLFNSR 265 (266)
Q Consensus 204 GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~-~~~~~~~~~v~~q~ 265 (266)
|||+|+.|+++|+++++++++||++||||+||++||++++.++++++- ....+|+++|++|+
T Consensus 173 GKs~L~~~~~~~~~~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~ats 235 (494)
T CHL00060 173 GKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQM 235 (494)
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECC
Confidence 999999999999877766799999999999999999999999998862 23477999999986
No 4
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=100.00 E-value=2.9e-52 Score=403.11 Aligned_cols=205 Identities=46% Similarity=0.798 Sum_probs=194.1
Q ss_pred cEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccCChhh
Q psy17544 54 GRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAET 133 (266)
Q Consensus 54 GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~VpvG~~l 133 (266)
|+|++|+|+||+|+|+..+|.+++.+.+.. +..+.+||+++++++.+++++|++++||+.|++|.+++++++||+|++|
T Consensus 1 G~i~~i~g~vvdv~f~~~~p~i~~~l~~~~-~~~~~~EVv~~l~~~~v~l~~l~~t~Gi~~G~~V~~tg~~~~VpVg~~l 79 (449)
T TIGR03305 1 GHVVAVRGSIVDVRFDGELPAIHSVLRAGR-EGEVVVEVLSQLDAHHVRGIALTPTQGLARGMPVRDSGGPLKAPVGKPT 79 (449)
T ss_pred CeEEEEEcCEEEEEeCCCCcchhheEEecC-CCcEEEeeeeEecCCeEEEEEccCcccCCCCCEEEecCCceEEEcChhh
Confidence 899999999999999877999999999864 4568899999889999999999999999999999999999999999999
Q ss_pred hhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHHHHHHH
Q psy17544 134 LGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELI 213 (266)
Q Consensus 134 LGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L~~~ii 213 (266)
||||+|++|+|||+.+++...+++|++++||||++|.++++||+||||+||+|+|||||||++|||++|+|||+|+++++
T Consensus 80 LGRVlD~~G~PiD~~~~~~~~~~~~i~~~ap~~~~R~~i~e~L~TGIr~ID~l~pigkGQr~~Ifg~~G~GKt~l~~~~~ 159 (449)
T TIGR03305 80 LSRMFDVFGNTIDRREPPKDVEWRSVHQAPPTLTRRSSKSEVFETGIKAIDVLVPLERGGKAGLFGGAGVGKTVLLTEMI 159 (449)
T ss_pred cCCEEccCccccCCCCCCCCccccchhcCCCCchhcccCCcccccCceeeccccccccCCEEEeecCCCCChhHHHHHHH
Confidence 99999999999999988777778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 214 NNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 214 ~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
+|+++.|.+++||++||||+||++||++++.+.++++ |+++|++++
T Consensus 160 ~~~~~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~------rtvvv~~ts 205 (449)
T TIGR03305 160 HNMVGQHQGVSIFCGIGERCREGEELYREMKEAGVLD------NTVMVFGQM 205 (449)
T ss_pred HHHHhcCCCEEEEEEeccCcHHHHHHHHHHhhccccc------eEEEEEeCC
Confidence 9976555679999999999999999999999999998 999999986
No 5
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=100.00 E-value=1.4e-51 Score=399.89 Aligned_cols=208 Identities=54% Similarity=0.907 Sum_probs=194.2
Q ss_pred cccEEEEEECcEEEEEecCC-CcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccCC
Q psy17544 52 GNGRVVAVIGAVVDVQFDHD-LPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVG 130 (266)
Q Consensus 52 ~~GrV~~I~G~vV~v~~~~~-~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~VpvG 130 (266)
+.|+|++|.|.+++++++.+ .+++++.|++...++.+.+||+++++++.+.+++++++.||++|+.|.+|+++++||+|
T Consensus 2 ~~G~V~~i~g~vi~v~g~~~~~~~ige~~~i~~~~~~~~~eVv~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg 81 (461)
T PRK12597 2 MIGRIIKIRGDVVDVEFEEGALPPINQALTVHDDGGPTLLEVKQHLDETTVRAIALGSTSGLARGDEVRNTGGPIEVPVG 81 (461)
T ss_pred CccEEEEEECcEEEEEECCCCCcCccCEEEEecCCCcEEEEEEEEcCCCeEEEEEecCccCCCCCCEEEeCCCceEEEcC
Confidence 47999999999999999863 24899999996533457899999988899999999999999999999999999999999
Q ss_pred hhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHHHH
Q psy17544 131 AETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIM 210 (266)
Q Consensus 131 ~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L~~ 210 (266)
++|||||+|++|+|||+.+++...+++|++++||||++|.++++||+||||+||+|+|||||||+||||++|+|||||+.
T Consensus 82 ~~llGRVid~~G~plD~~~~~~~~~~~~i~~~~p~~~~R~~~~e~l~TGir~ID~l~pigkGQR~gIfa~~G~GKt~Ll~ 161 (461)
T PRK12597 82 EAVLGRLLDVLGEPLDGGPPLPAEERRPIHSTIPPLAEQDTSTEILETGIKVIDLLCPIAKGGKTGLFGGAGVGKTVLMM 161 (461)
T ss_pred hhhcCCEEeeccccccCCCCCCCcceeeccCCCcChhhcCCcCcceecCCeeecccCccccCCEEEeecCCCCChhHHHH
Confidence 99999999999999999988877778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 211 ELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 211 ~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
+|++|+++.+.+++||++||||+|||+||++++.+.++++ |+++|++++
T Consensus 162 ~~~~~~~~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~------rsvvv~ats 210 (461)
T PRK12597 162 ELIFNISKQHSGSSVFAGVGERSREGHELYHEMKESGVLD------KTVMVYGQM 210 (461)
T ss_pred HHHHHHHhhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcc------eeEEEecCC
Confidence 9999987666679999999999999999999999999998 999999875
No 6
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=100.00 E-value=1.3e-51 Score=391.10 Aligned_cols=201 Identities=29% Similarity=0.488 Sum_probs=182.6
Q ss_pred CccccEEEEEECcEEEEEecCCCcccccEEEEecCC--CceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccc
Q psy17544 50 GKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRS--PRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKI 127 (266)
Q Consensus 50 ~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~--~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~V 127 (266)
...+|+|++|.|.++++.++.. ++|+.|++.... ....+||++|. ++++.+++|++..|+.+|++|.++++++++
T Consensus 22 ~~~~G~v~~v~G~~lea~g~~~--~iGelc~i~~~~~~~~~~aEVvgf~-~~~~~L~p~~~~~gv~~g~~V~~~~~~~~v 98 (441)
T COG1157 22 YKRRGRLTRVTGLLLEAVGPQA--RIGELCKIERSRGSEKVLAEVVGFN-EERVLLMPFEPVEGVSPGAEVVPTGRPLSV 98 (441)
T ss_pred ceEEEEEEEEeeeEEEEecCCC--cccceEEEEecCCCCceeEEEEEEc-CCeEEEeccCccccCCCCCEEEecCCcccc
Confidence 5668999999999999999976 789999888642 23399999975 578889999999999999999999999999
Q ss_pred cCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHH
Q psy17544 128 PVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV 207 (266)
Q Consensus 128 pvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~ 207 (266)
++|++|||||+|++|+|||+.+.+....+.|++.+||||+.|.+++++|.||||+||+|+|||+|||+|||++||+||||
T Consensus 99 ~~g~~lLGRVld~~G~plDg~~~~~~~~~~~l~~~pp~pm~R~~I~~~l~tGVRaIDgllT~G~GQRiGIFAgsGVGKSt 178 (441)
T COG1157 99 PVGDALLGRVLDGLGRPLDGGGLPDGTERRPLDAPPPNPLKRRPIEEPLDTGVRAIDGLLTCGKGQRIGIFAGSGVGKST 178 (441)
T ss_pred ccChhhhhhhhccCCCcCcCCCCCCCcccccccCCCCCchhcccccccccccceeeecccccccCceeEEEecCCCcHHH
Confidence 99999999999999999999888888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhH-hcCccccCCCCCceEEEee
Q psy17544 208 LIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMI-ESGVISLKDKSSKVNFLFN 263 (266)
Q Consensus 208 L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~-~~gvl~~~~~~~~~~~v~~ 263 (266)
||.||++| +++| ++|+||||||||||+||+++.. +.| ++ |+++|+.
T Consensus 179 LLgMiar~-t~aD--v~ViaLIGERGREVrEFIE~~Lg~eg-l~------rsViVvA 225 (441)
T COG1157 179 LLGMIARN-TEAD--VNVIALIGERGREVREFIEKDLGEEG-LK------RSVVVVA 225 (441)
T ss_pred HHHHHhcc-ccCC--EEEEEEeeccchhHHHHHHHhcchhh-cc------ceEEEEE
Confidence 99999997 5776 9999999999999999998654 444 44 8888764
No 7
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=100.00 E-value=3.5e-51 Score=396.59 Aligned_cols=208 Identities=69% Similarity=1.108 Sum_probs=194.1
Q ss_pred cccEEEEEECcEEEEEecC-CCcccccEEEEe-cCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccC
Q psy17544 52 GNGRVVAVIGAVVDVQFDH-DLPPILNALEVE-GRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPV 129 (266)
Q Consensus 52 ~~GrV~~I~G~vV~v~~~~-~~p~ig~~~~v~-~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~Vpv 129 (266)
.+|||++|.|.++++.++. ..|++|+.|++. ..+..+.+||+++++++.+.++++++++||+.|+.|.++++++++|+
T Consensus 2 ~~G~V~~i~g~~v~~~~~~~~~~~ige~~~i~~~~~~~~~~EVv~~~~~~~~~~~~~~~~~gi~~G~~V~~tg~~~~v~v 81 (463)
T PRK09280 2 NTGKIVQVIGPVVDVEFPRGELPKIYNALEVEKGDGKKLVLEVAQHLGDGVVRTIAMGSTDGLVRGMEVIDTGAPISVPV 81 (463)
T ss_pred CccEEEEEEccEEEEEeCCCCCccccCEEEEEeCCCCeEEEEeeEEecCCeEEEEEecCccCCCCCCEEEeCCCceEEEc
Confidence 3699999999999999985 367999999994 22446899999988889999999999999999999999999999999
Q ss_pred ChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHHH
Q psy17544 130 GAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLI 209 (266)
Q Consensus 130 G~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L~ 209 (266)
|++|||||+|++|+|||+.+++...++||+++++|+|++|.++++||.||||+||+|+|||||||+||||++|+|||||+
T Consensus 82 g~~lLGRViD~~G~pld~~~~~~~~~~~pi~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGQR~gIfa~~GvGKt~Ll 161 (463)
T PRK09280 82 GKATLGRIFNVLGEPIDEKGPIGAEERWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLI 161 (463)
T ss_pred ChhhcCCEEeeeccccCCCCCcCccceecccCCCCChHHhCCccceeccCCeeecccCCcccCCEEEeecCCCCChhHHH
Confidence 99999999999999999998887778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 210 MELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 210 ~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
.|+++|+++++++++||++||||+|||+||++++.+.+.++ |+++|++++
T Consensus 162 ~~i~~~~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~------rsvvV~ats 211 (463)
T PRK09280 162 QELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLD------KTALVFGQM 211 (463)
T ss_pred HHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcc------eeEEEEECC
Confidence 99999986655679999999999999999999999999988 999999875
No 8
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=2.4e-50 Score=388.08 Aligned_cols=202 Identities=20% Similarity=0.314 Sum_probs=186.4
Q ss_pred ccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccCC
Q psy17544 51 KGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVG 130 (266)
Q Consensus 51 ~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~VpvG 130 (266)
+.+|+|++|.|++++++++. +++++.|++...++.+.+||+++ +++.+++++|++++||++|++|.++|++++||+|
T Consensus 3 ~~~g~v~~i~G~~v~v~~~~--~~~ge~~~i~~~~~~~~geVi~~-~~~~v~~~~~~~t~Gl~~g~~V~~tg~~~~vpvg 79 (436)
T PRK02118 3 KIYTKITDITGNVITVEAEG--VGYGELATVERKDGSSLAQVIRL-DGDKVTLQVFGGTRGISTGDEVVFLGRPMQVTYS 79 (436)
T ss_pred ceeEEEEEEECcEEEEEeCC--CCCCCEEEEEcCCCCEEEEEEEE-cCCEEEEEEecCCcCCCCCCEEEeCCCceEEEcC
Confidence 46899999999999999975 38999999964334578999875 7789999999999999999999999999999999
Q ss_pred hhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHHHH
Q psy17544 131 AETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIM 210 (266)
Q Consensus 131 ~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L~~ 210 (266)
++|||||+|++|+|||+.+++.. +.+|++++||||++|.++++||+||||+||+|+||+||||+||||++|+|||+|+.
T Consensus 80 ~~lLGRV~d~~G~PiD~~~~~~~-~~~~i~~~~~~p~~R~~~~e~l~TGIkaID~l~pl~rGQkigIF~gaGvgk~~L~~ 158 (436)
T PRK02118 80 ESLLGRRFNGSGKPIDGGPELEG-EPIEIGGPSVNPVKRIVPREMIRTGIPMIDVFNTLVESQKIPIFSVSGEPYNALLA 158 (436)
T ss_pred ccccCCEEccCCcccCCCCCCCc-ceeecCCCCCChHHcCCcccccccCcEEeecccccccCCEEEEEeCCCCCHHHHHH
Confidence 99999999999999999877754 45899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 211 ELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 211 ~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
+|+++ ++++ ++||++||||+||++||+++|.++|+++ |++||++||
T Consensus 159 ~ia~~-~~~~--v~Vfa~iGeR~rE~~ef~~~~~~~~~l~------rtvlv~~~a 204 (436)
T PRK02118 159 RIALQ-AEAD--IIILGGMGLTFDDYLFFKDTFENAGALD------RTVMFIHTA 204 (436)
T ss_pred HHHHh-hCCC--eEEEEEeccchhHHHHHHHHHhhCCCcc------eEEEEEECC
Confidence 99884 4544 9999999999999999999999999998 999999997
No 9
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=100.00 E-value=2.5e-50 Score=389.95 Aligned_cols=205 Identities=67% Similarity=1.065 Sum_probs=190.1
Q ss_pred ccEEEEEECcEEEEEecCCCcccccEE---EEecCCC-ceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCcccc
Q psy17544 53 NGRVVAVIGAVVDVQFDHDLPPILNAL---EVEGRSP-RLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIP 128 (266)
Q Consensus 53 ~GrV~~I~G~vV~v~~~~~~p~ig~~~---~v~~~~~-~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~Vp 128 (266)
+|+|++|.|.++++.++.. .+++.| ++...++ .+.+||+++++++.+.+++|+++.||+.|+.|.++++++++|
T Consensus 2 ~G~v~~v~g~~ie~~~~~~--~ig~~~~~l~i~~~~~~~~~~eVv~~~~~~~v~l~~l~~~~gi~~G~~V~~t~~~~~i~ 79 (461)
T TIGR01039 2 KGKVVQVIGPVVDVEFEQG--ELPRIYNALKVQNRAESELTLEVAQHLGDDTVRTIAMGSTDGLVRGLEVIDTGAPISVP 79 (461)
T ss_pred ccEEEEEEeeEEEEEECCC--CCcchheEEEEecCCCceEEEEeeeeeCCCeEEEEEccCcccCCCCCEEEeCCCceEEE
Confidence 5999999999999999964 577777 8843233 488999997888999999999999999999999999999999
Q ss_pred CChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHH
Q psy17544 129 VGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVL 208 (266)
Q Consensus 129 vG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L 208 (266)
+|++|||||+|++|+|||+.+++....+||++.+||+|++|.++++||+||||+||+|+|||||||+||||++|+|||||
T Consensus 80 vg~~lLGRViD~~G~pid~~~~~~~~~~~pi~~~~p~~~~R~~~~e~l~TGiraID~l~pig~GQr~~If~~~G~GKt~L 159 (461)
T TIGR01039 80 VGKETLGRIFNVLGEPIDEKGPIPAKERWPIHRKAPSFEEQSTKVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVL 159 (461)
T ss_pred cChhhcCCEEccCCcccCCCCCCCCCcccccccCCCChhHcCCcccccccCceeecccCCcccCCEEEeecCCCCChHHH
Confidence 99999999999999999999887766788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 209 IMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 209 ~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
+.++++|+++++++++||++||||+|||+||++++.+.++++ |+++|++++
T Consensus 160 ~~~~~~~~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~------rtvvV~ats 210 (461)
T TIGR01039 160 IQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVID------KTALVYGQM 210 (461)
T ss_pred HHHHHHHHHhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcc------eeEEEEECC
Confidence 999999986666679999999999999999999999999988 999999986
No 10
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=6.6e-49 Score=381.77 Aligned_cols=206 Identities=26% Similarity=0.368 Sum_probs=188.5
Q ss_pred ccccEEEEEECcEEEEEecCCCcccccEEEEec-CCCceEEEEeeeeCCceeEEEeccCCCCCC-CCCEEEecCCCcccc
Q psy17544 51 KGNGRVVAVIGAVVDVQFDHDLPPILNALEVEG-RSPRLVLEVAQHLGENTVRTIAMDGTEGLV-RGQVVADSGNPIKIP 128 (266)
Q Consensus 51 ~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~-~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~-~G~~V~~tg~~~~Vp 128 (266)
..||+|++|.|.+++++++..+ .+++.|++.. .+..+.+||+++. ++.+.+++|+++.||+ .|++|.+||++++||
T Consensus 2 ~~yg~V~~i~g~~v~v~g~~~~-~~ge~~~i~~~~~~~~~geVi~~~-~~~~~l~~~~~t~gl~i~G~~V~~tg~~~~V~ 79 (460)
T PRK04196 2 KEYRTVSEIKGPLLFVEGVEGV-AYGEIVEIELPNGEKRRGQVLEVS-EDKAVVQVFEGTTGLDLKDTKVRFTGEPLKLP 79 (460)
T ss_pred ceeEEEEEEECcEEEEeccCCC-CCCCEEEEEcCCCCEEEEEEEEEe-CCeEEEEEccCCCCCCCCCCEEEeCCCccEEE
Confidence 3589999999999999998654 8999999953 2334789999975 5788899999999999 899999999999999
Q ss_pred CChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHH
Q psy17544 129 VGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVL 208 (266)
Q Consensus 129 vG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L 208 (266)
+|++|||||+|++|+|||+.+++....++|+++.||+|++|.++++||.||||+||+|+|||||||+||||++|+|||+|
T Consensus 80 vg~~lLGRVvD~~G~PlD~~~~i~~~~~~~i~~~ap~~l~R~~i~epl~TGi~~ID~l~pig~GQR~gIfgg~G~GKs~L 159 (460)
T PRK04196 80 VSEDMLGRIFDGLGRPIDGGPEIIPEKRLDINGAPINPVAREYPEEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHNEL 159 (460)
T ss_pred cCcccccCEECccCCCccCCCCCCCCccCcccCCCCChhhcCCCCccccCCeEEEeccCcccCCCEEEeeCCCCCCccHH
Confidence 99999999999999999999888777788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC----CcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 209 IMELINNVAKAH----GGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 209 ~~~ii~~~a~~~----~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
+.+|+++ +++| +.+|||++||||+||++||+++|.+.++|+ ||++|+++.
T Consensus 160 ~~~ia~~-~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~l~------rtvvV~ats 213 (460)
T PRK04196 160 AAQIARQ-AKVLGEEENFAVVFAAMGITFEEANFFMEDFEETGALE------RSVVFLNLA 213 (460)
T ss_pred HHHHHHh-hhhccCCCceEEEEEEeccccHHHHHHHHHHHhcCCcc------eEEEEEEcC
Confidence 9998885 5554 349999999999999999999999999988 999999874
No 11
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=1.3e-48 Score=379.21 Aligned_cols=204 Identities=25% Similarity=0.355 Sum_probs=186.7
Q ss_pred ccEEEEEECcEEEEEecCCCcccccEEEEec-CCCceEEEEeeeeCCceeEEEeccCCCCCCCCCE-EEecCCCccccCC
Q psy17544 53 NGRVVAVIGAVVDVQFDHDLPPILNALEVEG-RSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQV-VADSGNPIKIPVG 130 (266)
Q Consensus 53 ~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~-~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~-V~~tg~~~~VpvG 130 (266)
|++|++|.|.+++++++..+ .+++.|++.. .+..+.+||+++. ++.+.+++|+++.||++|+. |.+|+++++||+|
T Consensus 2 y~~v~~i~g~iv~v~g~~~~-~~ge~~~i~~~~~~~~~geVv~~~-~~~~~l~~~~~t~gi~~g~~~V~~tg~~~~v~vg 79 (458)
T TIGR01041 2 YSTITEIAGPLVFVEGVEPV-AYNEIVEIETPDGEKRRGQVLDSS-EGLAVVQVFEGTTGLDPTGTKVRFTGETLKLPVS 79 (458)
T ss_pred ccEEEEEEccEEEEEccCCC-CcCCEEEEEcCCCcEEEEEEEEEE-CCEEEEEEecCCcCcCCCCcEEEECCCceEEEcC
Confidence 78999999999999998554 8999999953 2334789999975 57899999999999999987 9999999999999
Q ss_pred hhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHHHH
Q psy17544 131 AETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIM 210 (266)
Q Consensus 131 ~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L~~ 210 (266)
++|||||+|++|+|||+.+++....++|+++.||+|++|.++++||+||||+||+|+|||||||+||||++|+|||+|+.
T Consensus 80 ~~lLGRViD~~G~plD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~~ID~l~pig~GQR~gIfgg~G~GKs~L~~ 159 (458)
T TIGR01041 80 EDMLGRILNGSGEPIDGGPEIVPDERRDINGAPINPYAREYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELAA 159 (458)
T ss_pred hhhccCEEccCCcccCCCCCCCccceeeccCCCCChhhcCCCCCcCCCCeEEEEccCccccCCEEEeeCCCCCCHHHHHH
Confidence 99999999999999999988877778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC----CcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 211 ELINNVAKAH----GGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 211 ~ii~~~a~~~----~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
||+++ +++| +.++||++||||+||++||++++.+.++++ |+++|++++
T Consensus 160 ~ia~~-~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~------rtvvv~ats 211 (458)
T TIGR01041 160 QIARQ-ATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALE------RAVVFLNLA 211 (458)
T ss_pred HHHHh-hcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcc------eEEEEEECC
Confidence 98885 5554 239999999999999999999999999988 999999875
No 12
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=100.00 E-value=1.3e-48 Score=380.78 Aligned_cols=211 Identities=21% Similarity=0.357 Sum_probs=188.4
Q ss_pred ccccccCCCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEe
Q psy17544 41 HYAAKAAPKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVAD 120 (266)
Q Consensus 41 ~~~~~~~~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~ 120 (266)
+|..+ +..+.+|+|++|.|.++++++...+ .+++.|++. + .+.+||+++ +++.+.+++|+++.||+.|+.|.+
T Consensus 18 ~~~~~--~~~~~~G~V~~v~g~ii~v~gl~~~-~~gEl~~i~--~-~~~g~Vi~l-~~~~v~~~~l~~~~gi~~G~~V~~ 90 (497)
T TIGR03324 18 SFQPQ--LTVQEVGTVESVSTGIARVHGLPGV-GFEELLRFP--G-GLLGIAFNV-DEDEVGVVLLGEYSHLQAGDEVER 90 (497)
T ss_pred hcCCC--cceeEEEEEEEEeceEEEEEccCCC-CcCCEEEEC--C-CcEEEEEEE-cCCeEEEEEecCCcCCcCCCEEEE
Confidence 55553 3356689999999999999995544 899999994 2 378999995 668999999999999999999999
Q ss_pred cCCCccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecC
Q psy17544 121 SGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGG 200 (266)
Q Consensus 121 tg~~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg 200 (266)
||++++||+|++|||||+|++|+|||+.+++....++|++.+||++++|.++++||+||||+||+|+|||||||+||||+
T Consensus 91 tg~~~~vpvg~~llGRVvd~lG~PiDg~~~~~~~~~~~i~~~~p~~~~R~~v~epl~TGI~aID~l~pigrGQR~~Ifg~ 170 (497)
T TIGR03324 91 TGRVMDVPVGDGLLGRVVDPLGRPLDGGGPLASSPRLPIERPAPPIMDRAPVTVPLQTGLKVIDALIPIGRGQRELILGD 170 (497)
T ss_pred CCCCCeEECCHhhCcCEECCCCCCcCCCCCCCCCceeehhccCcCccccCCCCchhhcCCEEEeccCCcccCCEEEeecC
Confidence 99999999999999999999999999999888778899999999999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 201 AGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 201 ~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
+|+|||+|+.+++.|++++| .+|||++||||+||++||++++.+.|+++ ||++|++++
T Consensus 171 ~g~GKT~Lal~~I~~q~~~d-v~~V~~~IGeR~rev~e~i~~l~~~~~l~------~tvvV~ats 228 (497)
T TIGR03324 171 RQTGKTAIAIDTILNQKGRN-VLCIYCAIGQRASAVAKVVANLREHGAMD------YTIVVVTEG 228 (497)
T ss_pred CCCCHHHHHHHHHHHhcCCC-cEEEEEEeccCcHHHHHHHHHhhhcCCcc------eeEEEEeCC
Confidence 99999999544444454432 35999999999999999999999999998 999999875
No 13
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=4.4e-48 Score=379.07 Aligned_cols=211 Identities=22% Similarity=0.401 Sum_probs=189.6
Q ss_pred ccccccCCCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEe
Q psy17544 41 HYAAKAAPKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVAD 120 (266)
Q Consensus 41 ~~~~~~~~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~ 120 (266)
+|-.+ +..+.+|+|++|.|.+++++++..+ .+++.|++. ++ +.+||+++ +++.+.+++|+++.||+.|++|.+
T Consensus 18 ~~~~~--~~~~~~G~V~~v~g~~v~v~g~~~~-~~ge~~~i~--~~-~~g~Vi~~-~~~~~~~~~~~~~~gi~~g~~V~~ 90 (502)
T PRK09281 18 NFDAE--AEVEEVGTVISVGDGIARVYGLDNV-MAGELLEFP--GG-VYGIALNL-EEDNVGAVILGDYEDIKEGDTVKR 90 (502)
T ss_pred hcCCc--ceeEEEEEEEEEeCCEEEEECcccc-ccCCEEEEC--CC-cEEEEEEE-cCCeEEEEEecCcccccCCCeeee
Confidence 55543 3355689999999999999998655 899999995 23 78999995 567999999999999999999999
Q ss_pred cCCCccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecC
Q psy17544 121 SGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGG 200 (266)
Q Consensus 121 tg~~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg 200 (266)
++++++||+|++|||||+|++|+|||+.+++....++|++.+||+|++|.++++||+||||+||+|+|||||||++|||+
T Consensus 91 ~~~~~~v~vg~~llGrv~d~~G~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~~~l~TGi~~ID~l~pigrGQr~~Ifg~ 170 (502)
T PRK09281 91 TGRILEVPVGEALLGRVVNPLGQPIDGKGPIEATETRPVERKAPGVIDRKSVHEPLQTGIKAIDAMIPIGRGQRELIIGD 170 (502)
T ss_pred cCCceEEecCHHhcCCEEccCCCCcCCCCCCCCCceecccCCCcCccccCCccceeecCCeeeecccccccCcEEEeecC
Confidence 99999999999999999999999999999888778899999999999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 201 AGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 201 ~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
+|+|||+|+.+++.|++++ +.+|||++||||+||++||+++|.+.++++ ||++|+++.
T Consensus 171 ~g~GKt~lal~~i~~~~~~-dv~~V~~~IGer~~ev~e~~~~~~~~~~l~------~tvvv~ats 228 (502)
T PRK09281 171 RQTGKTAIAIDTIINQKGK-DVICIYVAIGQKASTVAQVVRKLEEHGAME------YTIVVAATA 228 (502)
T ss_pred CCCCchHHHHHHHHHhcCC-CeEEEEEEecCChHHHHHHHHHHhhcCCcc------ceEEEEeCC
Confidence 9999999955566556543 345799999999999999999999999998 999999875
No 14
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=100.00 E-value=7.5e-48 Score=374.28 Aligned_cols=204 Identities=22% Similarity=0.318 Sum_probs=185.4
Q ss_pred CccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccC
Q psy17544 50 GKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPV 129 (266)
Q Consensus 50 ~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~Vpv 129 (266)
....|+|++|.|.+++|+++..+ .+++.|++. ++ ..+||+++ +++.+.+++|+++.||+.|++|.+|+++++||+
T Consensus 4 ~~~~G~V~~v~~~ii~v~Gl~~~-~~ge~~~i~--~~-~~g~vi~~-~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpv 78 (485)
T CHL00059 4 IVNTGTVLQVGDGIARIYGLDEV-MAGELVEFE--DG-TIGIALNL-ESNNVGVVLMGDGLMIQEGSSVKATGKIAQIPV 78 (485)
T ss_pred eeeeEEEEEEeccEEEEeccccC-CcCCEEEEC--CC-CEEEEEEE-cCCEEEEEEeeCCCCCCCCCEEEECCCcceEEc
Confidence 34579999999999999999655 899999995 22 68999995 568999999999999999999999999999999
Q ss_pred ChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHHH
Q psy17544 130 GAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLI 209 (266)
Q Consensus 130 G~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L~ 209 (266)
|++|||||+|++|+|||+.+++....++|++.+||++++|.++++||+||||+||+|+|||||||++|||++|+|||+|+
T Consensus 79 g~~llGRVvd~lG~piDg~~~~~~~~~~~i~~~ap~~~~R~~v~epl~TGI~aID~l~pigrGQR~~I~g~~g~GKt~La 158 (485)
T CHL00059 79 SEAYLGRVVNALAKPIDGKGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 158 (485)
T ss_pred CHhhcCCEECCCCCeeCCCCCcCCCccccccCCCCCchhccCCCcccccCceeeccccccccCCEEEeecCCCCCHHHHH
Confidence 99999999999999999999887777889999999999999999999999999999999999999999999999999995
Q ss_pred HHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 210 MELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 210 ~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
.+++.|+++ ++.+|||++||||+|||+||++++.+.++++ +|++|+++.
T Consensus 159 l~~I~~q~~-~dv~cV~~~IGer~rev~e~~~~l~~~~~l~------~tvvV~ata 207 (485)
T CHL00059 159 TDTILNQKG-QNVICVYVAIGQKASSVAQVVTTLQERGAME------YTIVVAETA 207 (485)
T ss_pred HHHHHhccc-CCeEEEEEEecCCchHHHHHHHHhhcccchh------ceEEEEeCC
Confidence 555555643 3357799999999999999999999999998 999998864
No 15
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=100.00 E-value=8.4e-48 Score=377.00 Aligned_cols=211 Identities=26% Similarity=0.413 Sum_probs=188.4
Q ss_pred ccccccCCCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEe
Q psy17544 41 HYAAKAAPKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVAD 120 (266)
Q Consensus 41 ~~~~~~~~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~ 120 (266)
+|..+ +..+.+|+|++|.|.+++++++..+ ++++.|++. ++ +.+||+++ +++.+.+++++++.|++.|+.|.+
T Consensus 17 ~~~~~--~~~~~~G~V~~v~g~ii~v~g~~~~-~~ge~~~i~--~~-~~g~Vi~~-~~~~~~~~~~~~~~gi~~G~~V~~ 89 (501)
T TIGR00962 17 NFEKD--IEMEEVGTVVSVGDGIARVYGLENV-MSGELIEFE--GG-VQGIALNL-EEDSVGAVIMGDYSNIREGSTVKR 89 (501)
T ss_pred hcCCc--ceeEEEEEEEEEeCCEEEEECCcCC-CCCCEEEEC--CC-eEEEEEEe-cCCeEEEEEecCCcCCCCCCeeEe
Confidence 55553 3355689999999999999998655 899999994 23 78999995 568999999999999999999999
Q ss_pred cCCCccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecC
Q psy17544 121 SGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGG 200 (266)
Q Consensus 121 tg~~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg 200 (266)
||++++||+|++|||||+|++|+|||+.+++....++|++..||++++|.++++||.||||+||+|+|||||||++|||+
T Consensus 90 tg~~~~v~vg~~llGRV~d~~G~pld~~~~~~~~~~~~i~~~~p~~~~R~~i~~pl~TGi~aID~l~pigrGQr~~I~g~ 169 (501)
T TIGR00962 90 TGRILKVPVGDGLLGRVVNALGQPIDGKGPIDSDEFRPIEKIAPGVMERKSVHEPLQTGIKAIDAMIPIGRGQRELIIGD 169 (501)
T ss_pred cCCccEEecChHhcCCEeCCCCCeeCCCCCcCCCCceeeecCCCChhhcCCcCceeccCCceeeccCCcccCCEEEeecC
Confidence 99999999999999999999999999998887777889999999999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 201 AGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 201 ~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
+|+|||+|+.+++.|++++| .+|||++||||+||++||++++.+.++++ ||++|++++
T Consensus 170 ~g~GKt~Lal~~i~~~~~~d-v~~V~~~IGer~rev~e~~~~~~~~~~l~------~tvvV~ats 227 (501)
T TIGR00962 170 RQTGKTAVAIDTIINQKDSD-VYCVYVAIGQKASTVAQVVRKLEEHGAMD------YTIVVAATA 227 (501)
T ss_pred CCCCccHHHHHHHHhhcCCC-eEEEEEEccCChHHHHHHHHHHHhcCccc------eeEEEEecC
Confidence 99999999544455565432 45799999999999999999999999998 999999875
No 16
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=100.00 E-value=1.4e-47 Score=374.51 Aligned_cols=212 Identities=26% Similarity=0.422 Sum_probs=189.5
Q ss_pred cccccccCCCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEE
Q psy17544 40 KHYAAKAAPKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVA 119 (266)
Q Consensus 40 ~~~~~~~~~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~ 119 (266)
++|..+ +..+.+|+|++|.|.++++.+...+ .+++.|++.+ + +.+||+++ +++.+.+++|+++.||+.|+.|.
T Consensus 17 ~~~~~~--~~~~~~G~V~~v~g~i~~v~gl~~~-~~ge~~~i~~--~-~~g~V~~l-~~~~v~~~~l~~~~gi~~G~~V~ 89 (502)
T PRK13343 17 ARYEPQ--PDAREIGRVESVGDGIAFVSGLPDA-ALDELLRFEG--G-SRGFAFNL-EEELVGAVLLDDTADILAGTEVR 89 (502)
T ss_pred hcCCCc--ceeEEeeEEEEEeCCEEEEeCCCCC-CCCCEEEECC--C-cEEEEEEe-cCCeEEEEEeeCCCCCCCCCEeE
Confidence 567654 3356789999999999999995444 7999999942 2 78999995 67899999999999999999999
Q ss_pred ecCCCccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeec
Q psy17544 120 DSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFG 199 (266)
Q Consensus 120 ~tg~~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfg 199 (266)
+||++++||+|++|||||+|++|+|||+.+++....++|++..+|++++|.++++||.||||+||+|+|||||||++|||
T Consensus 90 ~tg~~~~vpvg~~llGRVid~lG~piDg~~~i~~~~~~~i~~~ap~~~~R~~v~epl~TGIkaID~l~pigrGQR~~I~g 169 (502)
T PRK13343 90 RTGRVLEVPVGDGLLGRVIDPLGRPLDGGGPLQATARRPLERPAPAIIERDFVTEPLQTGIKVVDALIPIGRGQRELIIG 169 (502)
T ss_pred ecCCcceeecCHHhcCCEECCCCCcccCCCCCCCCceecccCCCcChhhcCCCCcccccCCceeccccccccCCEEEeeC
Confidence 99999999999999999999999999999998888889999999999999999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 200 GAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 200 g~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
++|+|||+|+.+++.|++++| .+|||++||||+|||+||++++.+.++++ ||++|+++.
T Consensus 170 ~~g~GKt~Lal~~i~~~~~~d-v~~V~~~IGer~rev~e~~~~l~~~~~l~------~tvvV~ats 228 (502)
T PRK13343 170 DRQTGKTAIAIDAIINQKDSD-VICVYVAIGQKASAVARVIETLREHGALE------YTTVVVAEA 228 (502)
T ss_pred CCCCCccHHHHHHHHhhcCCC-EEEEEEEeccChHHHHHHHHHHHhcCccc------eeEEEEecc
Confidence 999999999544555554332 45799999999999999999999999998 999999864
No 17
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=2.3e-46 Score=361.52 Aligned_cols=208 Identities=27% Similarity=0.393 Sum_probs=184.9
Q ss_pred CCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCC-ceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCcc
Q psy17544 48 PKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSP-RLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIK 126 (266)
Q Consensus 48 ~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~-~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~ 126 (266)
+..+.+|+|++|.|.++++++++...++++.|++...++ .+.+||++|.+ +++.+++|+++.|++.|++|.+++++++
T Consensus 13 ~~~~~~g~v~~i~g~~i~v~g~~~~~~~ge~~~i~~~~~~~~~~eVv~~~~-~~~~l~~~~~~~gi~~g~~V~~tg~~~~ 91 (442)
T PRK08927 13 DTLVIYGRVVAVRGLLVEVAGPIHALSVGARIVVETRGGRPVPCEVVGFRG-DRALLMPFGPLEGVRRGCRAVIANAAAA 91 (442)
T ss_pred CcceeeeEEEEEEccEEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEcC-CeEEEEEccCccCCCCCCEEEeCCCccE
Confidence 346789999999999999999852338999999965334 58999999876 5789999999999999999999999999
Q ss_pred ccCChhhhhhhhcccCccccCCCCCCCC-CccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccH
Q psy17544 127 IPVGAETLGRIINVIGEPIDERGPIDTD-KSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGK 205 (266)
Q Consensus 127 VpvG~~lLGRViD~~G~PlD~~~~~~~~-~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GK 205 (266)
||+|++|||||+|++|+|||+.+++... .++|++++||||++|.++++||+||||+||+|+||++|||++|||++|+||
T Consensus 92 v~vg~~llGRVid~~G~piDg~~~~~~~~~~~~i~~~~p~~~~R~~~~~~l~TGir~ID~l~~i~~Gqri~I~G~sG~GK 171 (442)
T PRK08927 92 VRPSRAWLGRVVNALGEPIDGKGPLPQGPVPYPLRAPPPPAHSRARVGEPLDLGVRALNTFLTCCRGQRMGIFAGSGVGK 171 (442)
T ss_pred EECChhhCCCEEccCCCCccCCCCCCCCcccccccCCCcChHHcCCcccccccceEEEeeeeEEcCCCEEEEECCCCCCH
Confidence 9999999999999999999999887664 578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 206 TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 206 T~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
|||+.+|+++ .+. +++||++||||+||++||+++..+...++ |+++|++++
T Consensus 172 TtLL~~I~~~-~~~--d~~v~~~iGER~rEv~ef~~~~l~~~~l~------rsvvv~ats 222 (442)
T PRK08927 172 SVLLSMLARN-ADA--DVSVIGLIGERGREVQEFLQDDLGPEGLA------RSVVVVATS 222 (442)
T ss_pred HHHHHHHHhc-cCC--CEEEEEEEecCcHHHHHHHHHHhhccCce------eEEEEEECC
Confidence 9999988874 344 48999999999999999997554433366 999999985
No 18
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.8e-46 Score=361.73 Aligned_cols=206 Identities=26% Similarity=0.420 Sum_probs=188.4
Q ss_pred CCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccc
Q psy17544 48 PKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKI 127 (266)
Q Consensus 48 ~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~V 127 (266)
+..+.+|+|++|.|.++++.++.. ++|+.|+|...++.+.+||++|. ++.+.+++|++++||+.|++|.++|++++|
T Consensus 21 ~~~~~~G~v~~v~g~~i~~~g~~~--~ige~~~i~~~~~~~~~EVv~~~-~~~~~l~~~~~~~gi~~g~~V~~tg~~~~v 97 (444)
T PRK08972 21 FRAVASGKLVRVVGLTLEATGCRA--PVGSLCSIETMAGELEAEVVGFD-GDLLYLMPIEELRGVLPGARVTPLGEQSGL 97 (444)
T ss_pred CCcceeeEEEEEEcCEEEEeeCCC--CCCCEEEEecCCCcEEEEEEEec-CCEEEEEECCCcCCCCCCCEEEECCCccEE
Confidence 336778999999999999999863 89999999532445899999976 568999999999999999999999999999
Q ss_pred cCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHH
Q psy17544 128 PVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV 207 (266)
Q Consensus 128 pvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~ 207 (266)
|+|++|||||+|++|+|||+.+++...+++|++.+||||++|.++++||.||+++||.++|+++|||++|||++|+||||
T Consensus 98 ~vg~~llGRVid~~G~plD~~~~~~~~~~~~i~~~~~~p~~R~~i~e~l~TGi~aID~ll~i~~GqrigI~G~sG~GKST 177 (444)
T PRK08972 98 PVGMSLLGRVIDGVGNPLDGLGPIYTDQRASRHSPPINPLSRRPITEPLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSV 177 (444)
T ss_pred EcChhhcCCeECCCCCCcCCCCCCCCCccccccCCCCChhhcCCCCCcccccceeecceEEEcCCCEEEEECCCCCChhH
Confidence 99999999999999999999998877778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 208 LIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 208 L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
|+.+++++ ... +++||++||||+|||+||++++.+.+.++ |+++|++++
T Consensus 178 LL~~I~~~-~~~--dv~Vi~lIGER~rEv~efi~~~l~~~~l~------rtvvv~ats 226 (444)
T PRK08972 178 LLGMMTRG-TTA--DVIVVGLVGERGREVKEFIEEILGEEGRA------RSVVVAAPA 226 (444)
T ss_pred HHHHhccC-CCC--CEEEEEEEcCChHHHHHHHHHhhccCCcc------cEEEEEECC
Confidence 99988874 333 49999999999999999999988877777 999999875
No 19
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=1.5e-46 Score=366.43 Aligned_cols=201 Identities=18% Similarity=0.272 Sum_probs=180.5
Q ss_pred cEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccCChhh
Q psy17544 54 GRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAET 133 (266)
Q Consensus 54 GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~VpvG~~l 133 (266)
-+|++|.|.++++.|+..+ .+++.|++.++ +...+||+++ +++.+.+++|+++.|++.|++|.+||++++||||++|
T Consensus 3 ~~V~~v~~~i~~v~Gl~~~-~~ge~~~~~~~-~~~~g~V~~~-~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~l 79 (507)
T PRK07165 3 PKIKSIFDYIVEVKGEYDY-QQNQFFTLKNN-PNVKAFVISA-TEDKAYLLINNEKGKIKINDELIELNNTNKVKTSKEY 79 (507)
T ss_pred CEEEEEeceEEEEEcccCC-CcCCEEEECCC-CeEEEEEEEE-eCCeEEEEEccCccCCCCCCEEEECCCccEEECCccc
Confidence 4899999999999999655 89999999543 3478999996 5678999999999999999999999999999999999
Q ss_pred hhhhhcccCccccCCCCCCC-----CCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHH
Q psy17544 134 LGRIINVIGEPIDERGPIDT-----DKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVL 208 (266)
Q Consensus 134 LGRViD~~G~PlD~~~~~~~-----~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L 208 (266)
||||+|++|+|||+.+++.. +..+|++.+||+|++|.++++||+||||+||+|+|||||||++|||++|+|||+|
T Consensus 80 LGRVvd~lG~piDg~g~i~~~~~~~~~~~~i~~~ap~~~~R~~v~epL~TGIkaID~l~pigrGQR~~Ifg~~gtGKT~l 159 (507)
T PRK07165 80 FGKIIDIDGNIIYPEAQNPLSKKFLPNTSSIFNLAHGLMTVKTLNEQLYTGIIAIDLLIPIGKGQRELIIGDRQTGKTHI 159 (507)
T ss_pred cCCEECCCCcccCCCCCCCcccccccccccccCCCCCchhhCCCCceeecCchhhhhcCCcccCCEEEeecCCCCCccHH
Confidence 99999999999999987655 4567999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeec
Q psy17544 209 IMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNS 264 (266)
Q Consensus 209 ~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q 264 (266)
+.+++.|+++ ++.+|||++||||+||+++|+++|.+.|+|+ +|++|..+
T Consensus 160 al~~I~~q~~-~dv~~V~~~IGer~~ev~~~~~~l~~~gal~------~tvvV~at 208 (507)
T PRK07165 160 ALNTIINQKN-TNVKCIYVAIGQKRENLSRIYETLKEHDALK------NTIIIDAP 208 (507)
T ss_pred HHHHHHHhcC-CCeEEEEEEccCChHHHHHHHHHhhhcCcee------eeEEEEeC
Confidence 5444455643 3356899999999999999999999999998 99988754
No 20
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=5.4e-46 Score=359.23 Aligned_cols=203 Identities=22% Similarity=0.307 Sum_probs=182.2
Q ss_pred ccEEEEEECcEEEEEecCCCcccccEEEEecCCC-ceEEEEeeeeCCceeEEEeccCCCCCCC-CCEEEecCCCccccCC
Q psy17544 53 NGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSP-RLVLEVAQHLGENTVRTIAMDGTEGLVR-GQVVADSGNPIKIPVG 130 (266)
Q Consensus 53 ~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~-~l~~EVv~~l~~~~v~l~~~~~t~Gl~~-G~~V~~tg~~~~VpvG 130 (266)
|++|++|.|.++++++++.+ ++|+.|++...++ ...+||+++. ++.+.+++|++++||+. |++|.+++++++||+|
T Consensus 2 y~~v~~i~G~~i~~~g~~~~-~~Ge~~~i~~~~~~~~~geVi~~~-~~~~~l~~~~~~~gi~~~g~~V~~t~~~~~v~vg 79 (466)
T TIGR01040 2 YRTVSGVNGPLVILDNVKFP-RFAEIVNLTLPDGTVRSGQVLEVS-GNKAVVQVFEGTSGIDAKKTTCEFTGDILRTPVS 79 (466)
T ss_pred CccceEEEccEEEEECCCCC-CcCCEEEEEeCCCCEEEEEEEEEe-CCeEEEEEcCCCCCcccCCCEEEECCCccEEEcC
Confidence 67899999999999998544 8999999952233 3789999975 57888999999999996 9999999999999999
Q ss_pred hhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHHHH
Q psy17544 131 AETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIM 210 (266)
Q Consensus 131 ~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L~~ 210 (266)
++|||||+|++|+|||+.+++....++|++++||||++|.++++||+||||+||+|+|||+|||+||||++|+|||+|+.
T Consensus 80 ~~lLGRVid~~G~piD~~~~~~~~~~~~i~~~~~~~~~R~~i~e~l~TGI~aID~l~~ig~GQRigIfagsGvGKs~L~~ 159 (466)
T TIGR01040 80 EDMLGRVFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAA 159 (466)
T ss_pred cccccCEECccccccCCCCCCCCCceeeccCCCCChhHcCCCCCeeecCcEEEeccCccccCCeeeeecCCCCCHHHHHH
Confidence 99999999999999999988777777899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh------cC-------CcEEEEEeecCCchHHHHH-HHHhHhcCccccCCCCCceEEEeecc
Q psy17544 211 ELINNVAK------AH-------GGYSVFAGVGERTREGNDL-YHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 211 ~ii~~~a~------~~-------~~v~V~alIGER~rEv~ef-~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
||+++ ++ +| +.++||++|||| ||+.|| +++|.+.|+++ |+++|++++
T Consensus 160 ~i~~~-~~~~~~~~aD~~~~~~~~~v~V~a~IGer-re~~efi~~~l~~~g~l~------rtvvv~ats 220 (466)
T TIGR01040 160 QICRQ-AGLVKLPTKDVHDGHEDNFAIVFAAMGVN-METARFFKQDFEENGSME------RVCLFLNLA 220 (466)
T ss_pred HHHHh-hccccccccccccccCCceEEEEEEeeee-hHHHHHHHHHHHhcCCcc------eEEEEEECC
Confidence 99886 33 22 238999999999 888886 56799999998 999999986
No 21
>PRK06936 type III secretion system ATPase; Provisional
Probab=100.00 E-value=1.3e-45 Score=356.09 Aligned_cols=204 Identities=24% Similarity=0.360 Sum_probs=183.6
Q ss_pred CccccEEEEEECcEEEEEecCCCcccccEEEEecC-CC-ceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccc
Q psy17544 50 GKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGR-SP-RLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKI 127 (266)
Q Consensus 50 ~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~-~~-~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~V 127 (266)
.+.+|+|++|.|.++++.++.. .+++.|++... .. .+.+||+++.+ +.+.+++|++++||+.|++|.+||++++|
T Consensus 21 ~~~~G~V~~v~g~~v~~~~~~~--~~ge~~~i~~~~~~~~~~~eVv~~~~-~~~~l~~~~~~~gi~~g~~V~~tg~~~~v 97 (439)
T PRK06936 21 IQIRGRVTQVTGTILKAVVPGV--RIGELCYLRNPDNSLSLQAEVIGFAQ-HQALLTPLGEMYGISSNTEVSPTGTMHQV 97 (439)
T ss_pred cceeeEEEEEECcEEEEEeCCC--CCCCEEEEecCCCCcceEEEEEEEEC-CeEEEEecCCCCCCCCCCEEEeCCCceEE
Confidence 6678999999999999998764 79999999642 23 58999999876 57779999999999999999999999999
Q ss_pred cCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHH
Q psy17544 128 PVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV 207 (266)
Q Consensus 128 pvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~ 207 (266)
|+|++|||||+|++|+|||+.+++...+++|++++||||++|.++++||+||+++||.++|+++|||++|||++|+||||
T Consensus 98 ~vg~~lLGRV~d~~G~plD~~~~~~~~~~~pi~~~~p~p~~R~~i~~~l~TGi~vid~l~~i~~Gq~~~I~G~sG~GKSt 177 (439)
T PRK06936 98 GVGEHLLGRVLDGLGQPFDGGHPPEPAAWYPVYADAPAPMSRRLIETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKST 177 (439)
T ss_pred EeCccccCCEECCCCCccCCCCCCCccceeeccCCCCChHHccccCCCCcCCcceeeeeEEecCCCEEEEECCCCCChHH
Confidence 99999999999999999999988877778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 208 LIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 208 L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
|+.+|+++ ++. +++||++||||+||++||+++..+...++ |+++|++++
T Consensus 178 Ll~~Ia~~-~~~--dv~V~~liGERgrEv~ef~~~~l~~~~l~------rtvvv~ats 226 (439)
T PRK06936 178 LLASLIRS-AEV--DVTVLALIGERGREVREFIESDLGEEGLR------KAVLVVATS 226 (439)
T ss_pred HHHHHhcC-CCC--CEEEEEEEccCcHHHHHHHHHHhcccccc------eeEEEEECC
Confidence 99999885 344 49999999999999999997744433365 999999875
No 22
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=1.1e-45 Score=363.68 Aligned_cols=205 Identities=24% Similarity=0.380 Sum_probs=179.4
Q ss_pred ccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccCChh
Q psy17544 53 NGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAE 132 (266)
Q Consensus 53 ~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~VpvG~~ 132 (266)
+|+|++|.|++|+++++..+ .+++.|+|. +..+.+||+++ +++.+.+++|+++.||++|++|..||++++|++||+
T Consensus 2 ~G~V~~v~G~vV~a~g~~~~-~~gE~v~v~--~~~l~gEVI~l-~~d~a~iq~ye~t~Gl~~G~~V~~tg~~lsv~lGpg 77 (591)
T TIGR01042 2 YGYIYKVSGPVVVAENMAGA-AMYELVRVG--HDELVGEIIRL-EGDKATIQVYEETSGLTVGDPVLRTGKPLSVELGPG 77 (591)
T ss_pred ceEEEEEECCEEEEecCCCC-CcCCEEEEC--CCceEEEEEEE-cCCeEEEEEccCccCCCCCCEEEeCCCccEEEcCHH
Confidence 69999999999999998655 899999994 44589999996 557899999999999999999999999999999999
Q ss_pred hhhhhhcccCccccCCC----C-----------CCCC-------------------------------------------
Q psy17544 133 TLGRIINVIGEPIDERG----P-----------IDTD------------------------------------------- 154 (266)
Q Consensus 133 lLGRViD~~G~PlD~~~----~-----------~~~~------------------------------------------- 154 (266)
|||||+|++|||||+.+ + ++.+
T Consensus 78 lLG~V~DgigrPLd~~~~~~~~~fi~rG~~~~~ld~~~~w~f~p~~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g 157 (591)
T TIGR01042 78 ILGNIFDGIQRPLKAIAEQSQSIYIPRGVNVPALDRDKKWEFTPKKLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARG 157 (591)
T ss_pred HhhcccCcCCCchHHHHhhccCccccCCCCCCCCCccccceeeccccccCCCccCCCeEEEEecCCceeeeeecCCCCce
Confidence 99999999999999753 2 2111
Q ss_pred --------------------------------CccccccCcccccccccccccccccceEeecccccccCceeeeecCCC
Q psy17544 155 --------------------------------KSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAG 202 (266)
Q Consensus 155 --------------------------------~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G 202 (266)
+.||+.. ||++++|.++++||.||+|+||+|+||+||||++||||+|
T Consensus 158 ~v~~i~~~g~ytv~~~i~~~~~~g~~~~~~m~~~wPvr~-p~p~~~R~~~~~PL~TG~RvID~lfPi~kGqr~~I~gg~G 236 (591)
T TIGR01042 158 TITYIAPAGNYTVDDTVLEVEFQGVKKKFSMLQTWPVRS-PRPVTEKLPANTPLLTGQRVLDALFPCVQGGTTAIPGAFG 236 (591)
T ss_pred EEEEEccCCCceeeeEEEEEeeCCceeeeccceeeeccc-CCChhhccCCCCccccchhhhhhccchhcCCeEEEEcCCC
Confidence 1578887 8999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCc-ccc--CCCCCceEEEeecc
Q psy17544 203 VGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGV-ISL--KDKSSKVNFLFNSR 265 (266)
Q Consensus 203 ~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gv-l~~--~~~~~~~~~v~~q~ 265 (266)
+|||+|+++|++ ++++| ++||++||||+||++||+++|++... ... ++.++||++|++..
T Consensus 237 ~GKT~l~~~lak-~s~aD--viVyvg~GERG~Em~evle~fp~l~dp~~g~~~~~m~rtvlVa~ts 299 (591)
T TIGR01042 237 CGKTVISQSLSK-YSNSD--AIVYVGCGERGNEMAEVLMDFPELTMEVDGREESIMKRTTLVANTS 299 (591)
T ss_pred cCHHHHHHHHHh-ccCcC--EEEEEEEeechHHHHHHHHHhHhhcccccccccccccceEEEEEcC
Confidence 999999999987 45665 99999999999999999999987642 111 35577999999864
No 23
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=2.4e-45 Score=362.29 Aligned_cols=205 Identities=25% Similarity=0.367 Sum_probs=177.5
Q ss_pred ccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccCChh
Q psy17544 53 NGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAE 132 (266)
Q Consensus 53 ~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~VpvG~~ 132 (266)
.|+|++|.|++++++++... .+++.|+|. +..+.+||+++. ++.+.+++|++|.||++|++|..||++++|++|++
T Consensus 1 ~G~I~~V~Gpvv~a~g~~~~-~~gE~v~v~--~~~l~gEVi~~~-~d~a~iqvye~t~Gl~~G~~V~~tg~plsV~lGpg 76 (578)
T TIGR01043 1 KGRIIRVSGPLVVADGMKGA-QMYEVVKVG--EEGLIGEIIRIE-GDKAFIQVYEETSGIKPGEPVVGTGAPLSVELGPG 76 (578)
T ss_pred CCEEEEEECCEEEEecCCCC-CcCCEEEEC--CCcEEEEEEEEc-CCeEEEEECCCCCCCCCCCEEEECCCccEEEcCHH
Confidence 49999999999999998744 899999994 345899999975 57888999999999999999999999999999999
Q ss_pred hhhhhhcccCccccCCCC--------------CCCC--------------------------------------------
Q psy17544 133 TLGRIINVIGEPIDERGP--------------IDTD-------------------------------------------- 154 (266)
Q Consensus 133 lLGRViD~~G~PlD~~~~--------------~~~~-------------------------------------------- 154 (266)
|||||+|++|||||+.++ ++.+
T Consensus 77 lLGrV~DgigrPLd~~~~~~g~~i~rg~~~~~l~~~~~w~f~p~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v 156 (578)
T TIGR01043 77 LLGSIYDGVQRPLDVLKEKTGDFIARGVDAPGLDRDKKWHFKPTVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEI 156 (578)
T ss_pred HhcceeccCCccccCcccccccccccCccCCCcCcccccccccccccCccccCCceEEEEecccceeeeeecCCCCcceE
Confidence 999999999999997631 1111
Q ss_pred -----------------------------CccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccH
Q psy17544 155 -----------------------------KSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGK 205 (266)
Q Consensus 155 -----------------------------~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GK 205 (266)
+.||+.. |+++++|.++++||.||+|+||+|+||+||||++|||++|+||
T Consensus 157 ~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~wPvr~-p~p~~~R~~~~~pL~TGiRvID~l~Pi~kGqr~~I~gg~G~GK 235 (578)
T TIGR01043 157 VEIAEEGDYTVEDTIAVVDTDGDEEIKMYQKWPVRI-PRPYKEKLPPEVPLITGQRILDTFFPIAKGGTAAIPGPFGSGK 235 (578)
T ss_pred EEeccCCCceeeeeEEEEecCCceeeeeeeeccccc-CCCchhcCCCCcchhccchhhhccccccCCCEEEEecCCCCCH
Confidence 1568877 8889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCcc-ccCCCCCceEEEeecc
Q psy17544 206 TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVI-SLKDKSSKVNFLFNSR 265 (266)
Q Consensus 206 T~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl-~~~~~~~~~~~v~~q~ 265 (266)
|+|+++++++ +++ +++||++||||+||++||+++|++..=- ..++.++||+||+++.
T Consensus 236 T~l~~~lak~-~~a--divVyvg~GERG~E~~e~le~f~~l~dp~~g~~~m~RTvlVanTS 293 (578)
T TIGR01043 236 TVTQHQLAKW-SDA--DIVVYIGCGERGNEMTDVLEEFPELKDPKTGKPLMERTVLIANTS 293 (578)
T ss_pred HHHHHHHHhc-CCC--CEEEEEEeccChHHHHHHHHHhHhhcccccccccccceEEEEECC
Confidence 9999999985 445 4999999999999999999999873211 1134566999999864
No 24
>PTZ00185 ATPase alpha subunit; Provisional
Probab=100.00 E-value=6e-45 Score=354.87 Aligned_cols=207 Identities=21% Similarity=0.320 Sum_probs=179.4
Q ss_pred ccccEEEEEECcEEEE---EecCCCcccccEEEEecCC-CceEEEEeeeeCCc-eeEEEeccCCCCCCCCCEEEecCCCc
Q psy17544 51 KGNGRVVAVIGAVVDV---QFDHDLPPILNALEVEGRS-PRLVLEVAQHLGEN-TVRTIAMDGTEGLVRGQVVADSGNPI 125 (266)
Q Consensus 51 ~~~GrV~~I~G~vV~v---~~~~~~p~ig~~~~v~~~~-~~l~~EVv~~l~~~-~v~l~~~~~t~Gl~~G~~V~~tg~~~ 125 (266)
...|+|++|.|.+++| ++.+++ ..+|.+++...+ +...+.|... +++ ++.+++|++++||+.|++|.+||+++
T Consensus 38 ~~~G~V~~v~~gia~v~~v~Gl~~~-~~gElv~f~~~~~~~~~G~vlnl-~~d~~v~~v~lg~~~gI~~G~~V~~tg~~~ 115 (574)
T PTZ00185 38 EMIGYVHSIDGTIATLIPAPGNPGV-AYNTIIMIQVSPTTFAAGLVFNL-EKDGRIGIILMDNITEVQSGQKVMATGKLL 115 (574)
T ss_pred eeeEEEEEEcCeEEEEeecCCCccc-ccCceEEEEcCCCCeEEEEEEEe-cCCCeEEEEEecCccCCCCCCEEEECCCcc
Confidence 3579999998879997 566554 678888885333 2347888875 556 79999999999999999999999999
Q ss_pred cccCChhhhhhhhcccCccccCC------CCCCCC-CccccccCcccccccccccccccccceEeecccccccCceeeee
Q psy17544 126 KIPVGAETLGRIINVIGEPIDER------GPIDTD-KSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLF 198 (266)
Q Consensus 126 ~VpvG~~lLGRViD~~G~PlD~~------~~~~~~-~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIf 198 (266)
+||||++|||||+|++|+|||+. +++... .++|++.+||+|++|.++++||+||||+||+|+|||||||++||
T Consensus 116 ~VpVG~~lLGRVvD~lG~PIDg~~~~~~~g~i~~~~~~~pIe~~ap~~~~R~~v~epL~TGIkaID~LiPIGRGQR~lIf 195 (574)
T PTZ00185 116 YIPVGAGVLGKVVNPLGHEVPVGLLTRSRALLESEQTLGKVDAGAPNIVSRSPVNYNLLTGFKAVDTMIPIGRGQRELIV 195 (574)
T ss_pred EEECCcccccCEECCCCcccCCCCccccCCCCCcccccccccCCCcChhhcCCCCCcCcCCceeeeccccccCCCEEEee
Confidence 99999999999999999999987 445544 46799999999999999999999999999999999999999999
Q ss_pred cCCCccHHHHHHHHHHHHHh-------cCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 199 GGAGVGKTVLIMELINNVAK-------AHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 199 gg~G~GKT~L~~~ii~~~a~-------~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
|++|+|||+|+.+++.||+. .++++|||++||||+||++|++++|.+.|+|+ +|++|++++
T Consensus 196 Gd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~------~TvVV~AtA 263 (574)
T PTZ00185 196 GDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALR------YTTVMAATA 263 (574)
T ss_pred cCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCcc------ceEEEEECC
Confidence 99999999996555445541 24469999999999999999999999999998 999999875
No 25
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=4.3e-45 Score=360.91 Aligned_cols=206 Identities=26% Similarity=0.369 Sum_probs=179.8
Q ss_pred cccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccCCh
Q psy17544 52 GNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGA 131 (266)
Q Consensus 52 ~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~VpvG~ 131 (266)
..|+|++|.|++|++++.... .+++.|++. +..+.+||+++.+ +.+.+++|++|.||++|++|++||++++|++||
T Consensus 3 ~~G~I~~V~Gpvv~~~~~~~~-~~~E~v~v~--~~~l~gEVi~~~~-d~a~iqv~e~T~Gl~~G~~V~~tg~plsv~lGp 78 (586)
T PRK04192 3 TKGKIVRVSGPLVVAEGMGGA-RMYEVVRVG--EEGLIGEIIRIEG-DKATIQVYEETSGIKPGEPVEFTGEPLSVELGP 78 (586)
T ss_pred ceeEEEEEECcEEEEEeCCCC-CccCEEEEC--CCcEEEEEEEEeC-CceEEEEecCCcCCCCCCEEEeCCCccEEEcCH
Confidence 479999999999999998754 899999994 3568999999765 677899999999999999999999999999999
Q ss_pred hhhhhhhcccCccccCCCC--------------CCC--------------------------------------------
Q psy17544 132 ETLGRIINVIGEPIDERGP--------------IDT-------------------------------------------- 153 (266)
Q Consensus 132 ~lLGRViD~~G~PlD~~~~--------------~~~-------------------------------------------- 153 (266)
+|||||+|++|||||+.++ ++.
T Consensus 79 glLGrv~Dg~grPLd~~~~~~~~~i~rG~~~~~l~~~~~w~f~p~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~ 158 (586)
T PRK04192 79 GLLGSIFDGIQRPLDELAEKSGDFLERGVYVPALDREKKWEFTPTVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGT 158 (586)
T ss_pred HhcCCeecCCCCcccccchhcccccccCCCCCCCCcccccceecccccCCEecCCceEEEEecCCceeeeeecCCCCceE
Confidence 9999999999999997641 111
Q ss_pred -------------------------------CCccccccCcccccccccccccccccceEeecccccccCceeeeecCCC
Q psy17544 154 -------------------------------DKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAG 202 (266)
Q Consensus 154 -------------------------------~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G 202 (266)
.++||++.++|+ .+|.++++||.||+|+||+|+||+||||++|||++|
T Consensus 159 ~~~i~~~G~ytv~~~i~~~~~~~G~~~~~~~~~~wPvr~~~p~-~~R~~~~~pL~TGirvID~l~Pi~kGq~~~Ipg~~G 237 (586)
T PRK04192 159 VKEIVSEGDYTVDDTIAVLEDEDGEGVELTMMQKWPVRRPRPY-KEKLPPVEPLITGQRVIDTFFPVAKGGTAAIPGPFG 237 (586)
T ss_pred EEEEccCCCceeeeEEEEEEccCCceeeeccccccccccCCcc-cccCCCCCccccCchhhhcccccccCCeEEEecCCC
Confidence 134799998888 999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCcc-ccCCCCCceEEEeecc
Q psy17544 203 VGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVI-SLKDKSSKVNFLFNSR 265 (266)
Q Consensus 203 ~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl-~~~~~~~~~~~v~~q~ 265 (266)
+|||+|+++|+++ +++ +++||++||||+||++||+++|+++--- ..++.++||+||+++.
T Consensus 238 ~GKTvl~~~iak~-a~a--divVyvg~GERg~E~~e~l~ef~~l~dp~~g~~~m~RTvlVanTS 298 (586)
T PRK04192 238 SGKTVTQHQLAKW-ADA--DIVIYVGCGERGNEMTEVLEEFPELIDPKTGRPLMERTVLIANTS 298 (586)
T ss_pred CCHHHHHHHHHhc-CCC--CEEEEEEcCcChHHHHHHHHHHHhhcccccccccceeEEEEEECC
Confidence 9999999999985 555 4999999999999999999999975210 1244566999999875
No 26
>PRK05922 type III secretion system ATPase; Validated
Probab=100.00 E-value=8.2e-43 Score=336.41 Aligned_cols=205 Identities=22% Similarity=0.326 Sum_probs=186.2
Q ss_pred CCccccEEEEEECcEEEEEecCCCcccccEEEEecC-CCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccc
Q psy17544 49 KGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGR-SPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKI 127 (266)
Q Consensus 49 ~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~-~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~V 127 (266)
..+.+|+|++|.|.+++++++.. ++++.|++... +..+.+||+++. ++++.+++|+++.|++.|++|.++++++++
T Consensus 16 ~~~~~g~v~~v~g~~i~~~g~~~--~~ge~~~i~~~~~~~~~~eVv~~~-~~~~~l~~~~~~~gi~~G~~V~~~~~~~~v 92 (434)
T PRK05922 16 PYRECGLLSRVSGNLLEAQGLSA--CLGELCQISLSKSPPILAEVIGFH-NRTTLLMSLSPIHYVALGAEVLPLRRPPSL 92 (434)
T ss_pred cceeeeEEEEEEccEEEEEeCCC--CCCCEEEEecCCCCeeEEEEEEEe-CCeEEEEEccCCCCCCCCCEEEeCCCCcEE
Confidence 35678999999999999999874 69999999532 335889999975 578999999999999999999999999999
Q ss_pred cCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHH
Q psy17544 128 PVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV 207 (266)
Q Consensus 128 pvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~ 207 (266)
|+|++|||||+|++|+|||+.+++....++|++.+||+|++|.++++||+||||+||+|+|+++|||++|||++|+||||
T Consensus 93 ~vg~~llGrv~d~~G~pld~~~~~~~~~~~pi~~~~~~~~~R~~i~e~l~TGIr~ID~ll~I~~GqrigI~G~nG~GKST 172 (434)
T PRK05922 93 HLSDHLLGRVLDGFGNPLDGKEQLPKTHLKPLFSSPPSPMSRQPIQEIFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKSS 172 (434)
T ss_pred EcChhhcCCEeCCCCCccCCCCCCCccceeecccCCCChhhcCCcceecCCCceeecceEEEcCCcEEEEECCCCCChHH
Confidence 99999999999999999999988777777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 208 LIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 208 L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
|+.+|+++ .+. +.++|++||||++|+.+|++++.+...++ ++++|++++
T Consensus 173 LL~~Ia~~-~~~--d~gvi~liGerg~ev~eyl~q~~~~~~~~------rTVlv~ats 221 (434)
T PRK05922 173 LLSTIAKG-SKS--TINVIALIGERGREVREYIEQHKEGLAAQ------RTIIIASPA 221 (434)
T ss_pred HHHHHhcc-CCC--CceEEEEeCCCCchHHHHHHHHHhhcccc------ceEEEEECC
Confidence 99988874 333 48999999999999999999998877766 999999875
No 27
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=6.7e-43 Score=338.21 Aligned_cols=206 Identities=20% Similarity=0.354 Sum_probs=188.7
Q ss_pred CCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCC----ceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCC
Q psy17544 48 PKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSP----RLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGN 123 (266)
Q Consensus 48 ~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~----~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~ 123 (266)
+..+.+|+|++|.|.++++.++.. ++|+.|+|...++ .+.+||+++ +++.+.+++|+++.||+.|+.|+++++
T Consensus 23 ~~~~~~g~v~~v~g~~~~~~g~~~--~~ge~c~i~~~~~~~~~~~~~eVv~~-~~~~~~l~~~~~~~gi~~g~~V~~tg~ 99 (451)
T PRK05688 23 AQPVVEGRLLRMVGLTLEAEGLRA--AVGSRCLVINDDSYHPVQVEAEVMGF-SGDKVFLMPVGSVAGIAPGARVVPLAD 99 (451)
T ss_pred CccceeeEEEEEEecEEEEecCCC--CCCCEEEEecCCCccccceEEEEEEE-cCCEEEEEEccCccCCCCCCEEEECCC
Confidence 446788999999999999999864 8999999953223 489999996 668999999999999999999999999
Q ss_pred CccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCc
Q psy17544 124 PIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGV 203 (266)
Q Consensus 124 ~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~ 203 (266)
+++||+|++|||||+|++|+|||+.+++...+++|++++||||++|.++++||+|||++||.|+|+++|||++|||++|+
T Consensus 100 ~~~v~vg~~llGRV~d~~G~plD~~~~~~~~~~~~i~~~~~~p~~R~~i~~~l~TGi~aID~l~~I~~GqrigI~G~sG~ 179 (451)
T PRK05688 100 TGRLPMGMSMLGRVLDGAGRALDGKGPMKAEDWVPMDGPTINPLNRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGV 179 (451)
T ss_pred ccEEEecccccCCEEeccCceecCCCCCCccceecccCCCCCHHHcccccCCcccceeeecceEEecCCcEEEEECCCCC
Confidence 99999999999999999999999998887777889999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 204 GKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 204 GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
|||||+.++++. . +.+++|+++||||++|+++|++++.+.+.++ ++++|++++
T Consensus 180 GKSTLl~~I~g~-~--~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~------rsvvv~ats 232 (451)
T PRK05688 180 GKSVLLGMMTRF-T--EADIIVVGLIGERGREVKEFIEHILGEEGLK------RSVVVASPA 232 (451)
T ss_pred CHHHHHHHHhCC-C--CCCEEEEEEeCcCcHhHHHHHHHHhhcCCcc------EEEEEEECC
Confidence 999999888763 3 3358899999999999999999999999988 999999875
No 28
>PRK09099 type III secretion system ATPase; Provisional
Probab=100.00 E-value=1e-42 Score=336.65 Aligned_cols=206 Identities=29% Similarity=0.476 Sum_probs=187.5
Q ss_pred CCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCCc--eEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCc
Q psy17544 48 PKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPR--LVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPI 125 (266)
Q Consensus 48 ~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~--l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~ 125 (266)
+..+.+|+|++|.|.+++++++. + ++|+.|++...++. +.+||+++. ++.+.+++|+++.||+.|++|.++++++
T Consensus 20 ~~~~~~G~V~~v~g~~i~~~g~~-~-~~ge~~~i~~~~g~~~~~~eVv~~~-~~~~~l~~~~~t~gi~~g~~V~~tg~~~ 96 (441)
T PRK09099 20 PAVRRTGKVVEVIGTLLRVSGLD-V-TLGELCELRQRDGTLLQRAEVVGFS-RDVALLSPFGELGGLSRGTRVIGLGRPL 96 (441)
T ss_pred CcceEeeEEEEEECCEEEEeccC-C-CCCCEEEEecCCCCeeeEEEEEEEE-CCEEEEEEccCCcCCCCCCEEEeCCCcc
Confidence 34677899999999999999986 3 89999999532232 789999975 5789999999999999999999999999
Q ss_pred cccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccH
Q psy17544 126 KIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGK 205 (266)
Q Consensus 126 ~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GK 205 (266)
+||+|++|||||+|++|+|||+.+++...+++|++..||||++|.++++||+||+++||.++|+++|||++|||++|+||
T Consensus 97 ~v~vg~~lLGrV~d~~G~piD~~~~~~~~~~~~i~~~~p~p~~R~~i~e~l~TGi~~ID~l~~i~~Gq~~~I~G~sG~GK 176 (441)
T PRK09099 97 SVPVGPALLGRVIDGLGEPIDGGGPLDCDELVPVIAAPPDPMSRRMVEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVGK 176 (441)
T ss_pred EEEeccccccCEEcccCCccCCCCCCccccccccccCCCChhhcCCcccccCCCceeccceeeecCCCEEEEECCCCCCH
Confidence 99999999999999999999999888777788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 206 TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 206 T~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
|+|+.+++++ .+. +.+||++||||+||++||++++.+.+.++ |+++|++++
T Consensus 177 TtLl~~ia~~-~~~--d~~vi~~iGer~~ev~ef~~~~~~~~~l~------rtvvv~~ts 227 (441)
T PRK09099 177 STLMGMFARG-TQC--DVNVIALIGERGREVREFIELILGEDGMA------RSVVVCATS 227 (441)
T ss_pred HHHHHHHhCC-CCC--CeEEEEEEccChHHHHHHHHHHhhcCCcc------eEEEEEECC
Confidence 9999988875 334 38999999999999999999999888877 999999875
No 29
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=8.7e-43 Score=337.01 Aligned_cols=206 Identities=23% Similarity=0.377 Sum_probs=186.2
Q ss_pred CCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCC----ceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEec--
Q psy17544 48 PKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSP----RLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADS-- 121 (266)
Q Consensus 48 ~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~----~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~t-- 121 (266)
+..+.+|||++|.|.++++.++.. ++|+.|.+...++ .+.+||++|. ++.+.+++|++++|++.|++|.++
T Consensus 23 ~~~~~~G~v~~v~g~~v~~~g~~~--~iG~~c~i~~~~~~~~~~~~~eVvg~~-~~~~~l~~~~~~~gi~~g~~v~~~~~ 99 (455)
T PRK07960 23 PAVRRYGRLTRATGLVLEATGLQL--PLGATCVIERQNGSETHEVESEVVGFN-GQRLFLMPLEEVEGILPGARVYARNI 99 (455)
T ss_pred CccccccEEEEEEEEEEEEeCCCC--CCCCEEEEEeCCCccccceeeeEEEec-CCEEEEEECCCccCCCCCCEEEECCc
Confidence 446779999999999999999864 7999999843223 4789999975 578889999999999999999999
Q ss_pred -----CCCccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceee
Q psy17544 122 -----GNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIG 196 (266)
Q Consensus 122 -----g~~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~g 196 (266)
++++++|+|++|||||+|++|+|||+++++....++|++++||||++|.++++||+||||+||+|+|+++|||++
T Consensus 100 ~~~~~~~~~~v~vg~~llGRvid~~G~piDg~~~~~~~~~~~i~~~~~~p~~R~~i~e~l~TGiraID~ll~I~~Gqri~ 179 (455)
T PRK07960 100 SGEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPAPDTGETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMG 179 (455)
T ss_pred ccccCCCceEEECCcccccCEECCCccccCCCCCCCCCccccccCCCcChHHhcccccchhccceeeeecccccCCcEEE
Confidence 999999999999999999999999999887777778999999999999999999999999999999999999999
Q ss_pred eecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 197 LFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 197 Ifgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
|||++|+|||||+.+++++ .+. +++|+++||||++|+++|++++.+.+.++ ++++|++++
T Consensus 180 I~G~sG~GKTTLL~~Ia~~-~~~--d~iv~g~Igerg~ev~e~~~~~~~~~~~~------~tvVv~~~a 239 (455)
T PRK07960 180 LFAGSGVGKSVLLGMMARY-TQA--DVIVVGLIGERGREVKDFIENILGAEGRA------RSVVIAAPA 239 (455)
T ss_pred EECCCCCCccHHHHHHhCC-CCC--CEEEEEEEEECCeEHHHHHHhhcCcCCCc------eEEEEEECC
Confidence 9999999999999888764 333 48999999999999999999998888877 999998864
No 30
>PRK06820 type III secretion system ATPase; Validated
Probab=100.00 E-value=2.9e-42 Score=333.32 Aligned_cols=210 Identities=23% Similarity=0.357 Sum_probs=187.5
Q ss_pred cccccccCCCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEE
Q psy17544 40 KHYAAKAAPKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVA 119 (266)
Q Consensus 40 ~~~~~~~~~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~ 119 (266)
++|.++.. ..+.+|+|++|.|.++++.++.. .+|+.|++.. + .+.+||+++.+ +.+.+++|++++||+.|++|+
T Consensus 18 ~~~~~~~~-~~~~~G~v~~v~g~~~~~~~~~~--~~ge~~~i~~-~-~~~~eVv~~~~-~~~~l~~~~~~~gi~~g~~v~ 91 (440)
T PRK06820 18 TRPSAPPE-GLRYRGPIVEIGPTLLRASLPGV--AQGELCRIEP-Q-GMLAEVVSIEQ-EMALLSPFASSDGLRCGQWVT 91 (440)
T ss_pred HhcCCCCC-ceeEeeEEEEEECcEEEEEECCC--CcCCEEEEec-C-CeEEEEEEEeC-CeEEEEEccCccCCCCCCEEE
Confidence 46665422 36778999999999999998754 7999999953 2 37899999765 679999999999999999999
Q ss_pred ecCCCccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeec
Q psy17544 120 DSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFG 199 (266)
Q Consensus 120 ~tg~~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfg 199 (266)
++|+++++|+|++|||||+|++|+|||+.+++ ..+++|+++.||||++|.+++++|.||+++||.|+|+++|||++|||
T Consensus 92 ~tg~~~~v~vg~~llGrv~d~~G~pld~~~~~-~~~~~~i~~~~p~p~~R~~~~~~l~TGi~aID~l~~i~~Gqri~I~G 170 (440)
T PRK06820 92 PLGHMHQVQVGADLAGRILDGLGAPIDGGPPL-TGQWRELDCPPPSPLTRQPIEQMLTTGIRAIDGILSCGEGQRIGIFA 170 (440)
T ss_pred ECCCCcEEEechhhcCCEECccCCccCCCCCC-CcccccccCCCCChhhcCCchhhccCCCceecceEEecCCCEEEEEC
Confidence 99999999999999999999999999998766 45678999999999999999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 200 GAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 200 g~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
++|+|||+|+.+|+++ . +.+++||++||||+||+++|++++...+.++ +++++++++
T Consensus 171 ~sG~GKStLl~~I~~~-~--~~dv~V~~~iGergrEv~ef~e~~l~~~~~~------rtvvv~ats 227 (440)
T PRK06820 171 AAGVGKSTLLGMLCAD-S--AADVMVLALIGERGREVREFLEQVLTPEARA------RTVVVVATS 227 (440)
T ss_pred CCCCChHHHHHHHhcc-C--CCCEEEEEEEccChHHHHHHHHHhhccCCce------eEEEEEeCC
Confidence 9999999999877763 3 3459999999999999999999999988877 999999875
No 31
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=2.7e-42 Score=331.88 Aligned_cols=200 Identities=29% Similarity=0.472 Sum_probs=180.5
Q ss_pred cEEEEEECcEEEEEecCCCcccccEEEEec-CCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccCChh
Q psy17544 54 GRVVAVIGAVVDVQFDHDLPPILNALEVEG-RSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAE 132 (266)
Q Consensus 54 GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~-~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~VpvG~~ 132 (266)
|+|++|.|.+++|+++.. .+++.|++.. .+..+.+||+++. ++.+.+++|+++.||++|++|.++|+++++|+|++
T Consensus 1 G~V~~i~G~~i~v~~~~~--~ige~~~i~~~~~~~~~~eVi~~~-~~~v~l~~~~~t~gl~~G~~V~~tg~~~~vpvg~~ 77 (413)
T TIGR03497 1 GKVTRVIGLTIESKGPKA--KIGELCSILTKGGKPVLAEVVGFK-EENVLLMPLGEVEGIGPGSLVIATGRPLAIKVGKG 77 (413)
T ss_pred CeEEEEECCEEEEEeCCC--CcCCEEEEEeCCCCeEEEEEEEEc-CCeEEEEEccCccCCCCCCEEEEcCCeeEEEcchh
Confidence 899999999999999853 7999999963 2345899999987 57899999999999999999999999999999999
Q ss_pred hhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHHHHHH
Q psy17544 133 TLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMEL 212 (266)
Q Consensus 133 lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L~~~i 212 (266)
|||||+|++|+|||+.+++...+++|++++||+|++|.+++++|.||+++||.++|+++|||++|||++|+|||+|+.+|
T Consensus 78 lLGRVid~~G~plD~~~~~~~~~~~~i~~~~p~~~~R~~~~~~~~tGi~~iD~l~~i~~Gqri~I~G~sG~GKTtLl~~i 157 (413)
T TIGR03497 78 LLGRVLDGLGRPLDGEGPIIGEEPYPLDNPPPNPLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMI 157 (413)
T ss_pred hcCCEEcCCCCcccCCCCCCCCccccccCCCcChHHccchhhhccccceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 99999999999999998877777899999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 213 INNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 213 i~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
+++ .+ .+..||+++|||+||++||+++..+...++ |+++|++++
T Consensus 158 ~~~-~~--~~~gvi~~~Ger~~ev~e~~~~~l~~~~~~------~~v~v~~ts 201 (413)
T TIGR03497 158 ARN-AK--ADINVIALIGERGREVRDFIEKDLGEEGLK------RSVVVVATS 201 (413)
T ss_pred hCC-CC--CCeEEEEEEccchHHHHHHHHHHhcccccc------eEEEEEECC
Confidence 764 33 358899999999999999998854433355 999999986
No 32
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=3.9e-42 Score=330.63 Aligned_cols=200 Identities=26% Similarity=0.470 Sum_probs=184.4
Q ss_pred cEEEEEECcEEEEEecCCCcccccEEEEec-CCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccCChh
Q psy17544 54 GRVVAVIGAVVDVQFDHDLPPILNALEVEG-RSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAE 132 (266)
Q Consensus 54 GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~-~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~VpvG~~ 132 (266)
|+|++|.|.+++++++. +.+++.|++.. .+..+.+||+++ .++.+.+++|++++||++|+.|.++|+++++|+|++
T Consensus 1 G~v~~v~g~~v~v~g~~--~~~ge~~~i~~~~~~~~~~eVv~~-~~~~v~l~~~~~t~gl~~G~~V~~tg~~~~v~vg~~ 77 (411)
T TIGR03496 1 GRVTRVVGLVLEAVGLR--APVGSRCEIESSDGDPIEAEVVGF-RGDRVLLMPLEDVEGLRPGARVFPLEGPLRLPVGDS 77 (411)
T ss_pred CEEEEEECcEEEEEeCC--CCcCCEEEEEcCCCCeEEEEEEEe-cCCEEEEEEccCccCCCCCCEEEECCCccEEEcchh
Confidence 89999999999999983 38999999953 222578999997 568999999999999999999999999999999999
Q ss_pred hhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHHHHHH
Q psy17544 133 TLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMEL 212 (266)
Q Consensus 133 lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L~~~i 212 (266)
|||||+|++|+|||+.+++...++||++++||||++|.++++++.||+++||.++|+++|||++|||++|+|||+|+.+|
T Consensus 78 llGrVid~~G~pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~~~tGi~~id~l~~i~~Gq~~~I~G~sG~GKTtLl~~I 157 (411)
T TIGR03496 78 LLGRVIDGLGRPLDGKGPLDAGERVPLYAPPINPLKRAPIDEPLDVGVRAINGLLTVGRGQRMGIFAGSGVGKSTLLGMM 157 (411)
T ss_pred hcCCEECCCCCCcCCCCCCCcccccccccCCCCHHhccCcceEeeeeEEeecceEEEecCcEEEEECCCCCCHHHHHHHH
Confidence 99999999999999998877778899999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 213 INNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 213 i~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
+++ .+. ++.||++||||+||++||++++.+.++++ |+++|++++
T Consensus 158 ~~~-~~~--~~~vi~~iGer~~ev~e~~~~~~~~~~~~------~tvvv~~ts 201 (411)
T TIGR03496 158 ARY-TEA--DVVVVGLIGERGREVKEFIEDILGEEGLA------RSVVVAATA 201 (411)
T ss_pred hcC-CCC--CEEEEEEEecChHHHHHHHHHHhhCCCcc------eEEEEEECC
Confidence 764 343 48899999999999999999999999988 999999986
No 33
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=5.2e-42 Score=330.14 Aligned_cols=202 Identities=28% Similarity=0.469 Sum_probs=181.8
Q ss_pred cEEEEEECcEEEEEecCCCcccccEEEEecCCC-ceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccCChh
Q psy17544 54 GRVVAVIGAVVDVQFDHDLPPILNALEVEGRSP-RLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAE 132 (266)
Q Consensus 54 GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~-~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~VpvG~~ 132 (266)
|+|++|.|.+++++++...+++++.|++...++ .+.+||+++ +++.+.++++++++||+.|++|++|+++++||+|++
T Consensus 1 G~v~~v~g~~~~v~g~~~~~~~ge~~~i~~~~~~~~~~eVv~~-~~~~v~l~~~~~~~gi~~G~~V~~tg~~~~i~vg~~ 79 (418)
T TIGR03498 1 GRVTAVTGLLIEVRGLSRAVRLGDRCAIRARDGRPVLAEVVGF-NGDRVLLMPFEPLEGVGLGCAVFAREGPLAVRPHPS 79 (418)
T ss_pred CEEEEEECcEEEEEcCCCccCCCCEEEEEcCCCCEEEEEEEEE-cCCeEEEEEccCCcCCCCCCEEEECCCccEEEeChh
Confidence 899999999999999976558999999964333 578999996 567999999999999999999999999999999999
Q ss_pred hhhhhhcccCccccCCCCCCCC-CccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHHHHH
Q psy17544 133 TLGRIINVIGEPIDERGPIDTD-KSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIME 211 (266)
Q Consensus 133 lLGRViD~~G~PlD~~~~~~~~-~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L~~~ 211 (266)
|||||+|++|+|||+.+++... .++|++.+||+|++|.++++||.||+++||.++|+++|||++|||++|+|||+|+.+
T Consensus 80 lLGRViD~lG~plD~~~~~~~~~~~~~i~~~~p~~~~R~~i~~~l~tGi~aiD~~~~i~~Gq~i~I~G~sG~GKTtLl~~ 159 (418)
T TIGR03498 80 WLGRVINALGEPIDGKGPLPQGERRYPLRASPPPAMSRARVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTLLSM 159 (418)
T ss_pred hcCCEECCCCCccCCCCCCCCCcceechhhcCCChhhccCcccccCCccEEEeeeccccCCcEEEEECCCCCChHHHHHH
Confidence 9999999999999999887555 468999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 212 LINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 212 ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
|+++ .+. +..+|+++|||+||++||++++.+.+.++ |+++|++++
T Consensus 160 I~~~-~~~--~~gvi~~iGer~~ev~~~~~~~l~~~~~~------~tvvv~ats 204 (418)
T TIGR03498 160 LARN-TDA--DVVVIALVGERGREVREFLEDDLGEEGLK------RSVVVVATS 204 (418)
T ss_pred HhCC-CCC--CEEEEEEEeeechHHHHHHHHhhhccccc------eeEEEEECC
Confidence 7764 333 48899999999999999999766555577 999999875
No 34
>PRK08149 ATP synthase SpaL; Validated
Probab=100.00 E-value=3.3e-41 Score=325.00 Aligned_cols=204 Identities=23% Similarity=0.389 Sum_probs=182.7
Q ss_pred CccccEEEEEECcEEEEEecCCCcccccEEEEecC--CCceE--EEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCc
Q psy17544 50 GKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGR--SPRLV--LEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPI 125 (266)
Q Consensus 50 ~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~--~~~l~--~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~ 125 (266)
.+.+|+|++|.|.+++++++.. ++|+.|++... ++.+. +||+++. ++.+.+++|+++.|++.|++|..+++++
T Consensus 4 ~~~~g~v~~i~g~~i~~~~~~~--~~ge~~~i~~~~~~~~~~~~~evv~~~-~~~~~l~~~~~~~gi~~g~~v~~~~~~~ 80 (428)
T PRK08149 4 LQRLAHPLRIQGPIIEAELPDV--AIGEICEIRAGWHSNEVIARAQVVGFQ-RERTILSLIGNAQGLSRQVVLKPTGKPL 80 (428)
T ss_pred eeeeeEEEEEEeeEEEEEECCC--CcCCEEEEeecCCCCceeeEEEEEEee-CcEEEEEECCCccCCCCCCEEEEcCCcC
Confidence 5678999999999999998865 79999999431 23355 8999964 5788899999999999999999999999
Q ss_pred cccCChhhhhhhhcccCccccCCC--CCC--CCCccccccCcccccccccccccccccceEeecccccccCceeeeecCC
Q psy17544 126 KIPVGAETLGRIINVIGEPIDERG--PID--TDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGA 201 (266)
Q Consensus 126 ~VpvG~~lLGRViD~~G~PlD~~~--~~~--~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~ 201 (266)
++|+|++|||||+|++|+|+|+.+ +.. ...++|++++||||++|.++++||.||+++||.++|+++|||++|||++
T Consensus 81 ~v~vg~~llGrv~d~~G~piD~~~~~~~~~~~~~~~~i~~~~~~~~~R~~i~e~l~tGi~aid~ll~i~~Gq~i~I~G~s 160 (428)
T PRK08149 81 SVWVGEALLGAVLDPTGKIVERFDAPPTVGPISEERVIDVAPPSYAERRPIREPLITGVRAIDGLLTCGVGQRMGIFASA 160 (428)
T ss_pred EEEeChhhcCCeeCCCCCCcCCCCCCcccccccceeehhccCCcchhccCccccccCCcEEEeeeeeEecCCEEEEECCC
Confidence 999999999999999999999886 332 2457899999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 202 GVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 202 G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
|+|||||+.+|+++ .+. +++||++||||++|++||++++.+.+.++ |+++|++++
T Consensus 161 G~GKTTLl~~i~~~-~~~--dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~------~~~vV~~~s 215 (428)
T PRK08149 161 GCGKTSLMNMLIEH-SEA--DVFVIGLIGERGREVTEFVESLRASSRRE------KCVLVYATS 215 (428)
T ss_pred CCChhHHHHHHhcC-CCC--CeEEEEEEeeCCccHHHHHHHHhhccccc------ceEEEEECC
Confidence 99999999988874 333 48899999999999999999999999988 999999875
No 35
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=100.00 E-value=8.2e-41 Score=323.85 Aligned_cols=206 Identities=28% Similarity=0.426 Sum_probs=185.1
Q ss_pred CCCccccEEEEEECcEEEEEecCCCcccccEEEEec--CCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCc
Q psy17544 48 PKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEG--RSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPI 125 (266)
Q Consensus 48 ~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~--~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~ 125 (266)
+..+.+|+|++|.|.++++.++. +.+++.|++.. +++.+.+||+++.+ +.+.+++|++++||++|++|+++|+++
T Consensus 19 ~~~~~~G~v~~i~G~~v~~~~~~--~~~ge~~~i~~~~~~~~~~~eVi~~~~-~~v~l~~~~~t~gl~~G~~V~~tg~~~ 95 (440)
T TIGR01026 19 RLVKRVGRVTKVKGLLIEAVGPQ--ASVGDLCLIERRGSEGRLVAEVVGFNG-EFVFLMPYEEVEGVRPGSKVLATGEGL 95 (440)
T ss_pred CccceeeEEEEEEeeEEEEEcCC--CCcCCEEEEeecCCCCcEEEEEEEecC-CEEEEEEccCCcCCCCCCEEEeCCCcc
Confidence 34678999999999999999975 37999999953 13348999999865 799999999999999999999999999
Q ss_pred cccCChhhhhhhhcccCccccCCC-CCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCcc
Q psy17544 126 KIPVGAETLGRIINVIGEPIDERG-PIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVG 204 (266)
Q Consensus 126 ~VpvG~~lLGRViD~~G~PlD~~~-~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~G 204 (266)
++|+|++|||||+|++|+|||+.+ ++.....+|++++||||++|.+++++|.||+++||.++|+++|||++|||++|+|
T Consensus 96 ~v~vg~~llGRVid~~G~plD~~~~~~~~~~~~~i~~~~~~p~~R~~~~e~l~TGi~~iD~l~~i~~Gq~~~I~G~sG~G 175 (440)
T TIGR01026 96 SIKVGDGLLGRVLDGLGKPIDGKGKFLDNVETEGLITAPINPLKRAPIREILSTGVRSIDGLLTVGKGQRIGIFAGSGVG 175 (440)
T ss_pred EEEcChhhhhceecCCCcccCCCCCCCCCccccccccCCCChHHccCccccccceeeeeeeccccCCCcEEEEECCCCCC
Confidence 999999999999999999999988 6665567799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 205 KTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 205 KT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
||||+.+|++. .+ .++.+|+++|||++|+++|++++...+.++ |+++|++++
T Consensus 176 KStLl~~I~~~-~~--~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~------~tvvv~~~~ 227 (440)
T TIGR01026 176 KSTLLGMIARN-TE--ADVNVIALIGERGREVREFIEHDLGEEGLK------RSVVVVATS 227 (440)
T ss_pred HHHHHHHHhCC-CC--CCEEEEEEEeecchHHHHHHHHHhcccccc------eEEEEEECC
Confidence 99999877764 33 348899999999999999999887777777 999999875
No 36
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=100.00 E-value=6.8e-41 Score=323.20 Aligned_cols=205 Identities=23% Similarity=0.301 Sum_probs=183.9
Q ss_pred cCCCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCc
Q psy17544 46 AAPKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPI 125 (266)
Q Consensus 46 ~~~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~ 125 (266)
|++..+.+|+|++|.|.++++.++.. ++|+.|++.. + ...+||+++.+ +.+.+++|+++.||+.|++|.++|+++
T Consensus 15 ~~~~~~~~G~v~~v~g~~~~~~~~~~--~~ge~~~i~~-~-~~~~eVv~~~~-~~~~l~~~~~~~gi~~g~~V~~tg~~~ 89 (433)
T PRK07594 15 PPDGYCRWGRIQDVSATLLNAWLPGV--FMGELCCIKP-G-EELAEVVGING-SKALLSPFTSTIGLHCGQQVMALRRRH 89 (433)
T ss_pred CCCccceeeEEEEEECCEEEEEECCc--CCCCEEEEec-C-CeEEEEEEEcC-CeEEEEEccCCcCCCCCCEEEeCCCcc
Confidence 34557788999999999999998764 7999999943 2 37899999765 677899999999999999999999999
Q ss_pred cccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccH
Q psy17544 126 KIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGK 205 (266)
Q Consensus 126 ~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GK 205 (266)
++|+|++|||||+|++|+|||+.++. ...++|++..+|||++|..++++|.||+++||.++|+++|||++|||++|+||
T Consensus 90 ~v~vg~~llGrVid~~G~pld~~~~~-~~~~~~i~~~~p~~~~r~~v~~~l~tGi~aID~ll~i~~GqrigI~G~sG~GK 168 (433)
T PRK07594 90 QVPVGEALLGRVIDGFGRPLDGRELP-DVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGK 168 (433)
T ss_pred EEEeChhhccCEEcccCCCcCCCCCC-cccccccccCCCCceeccCHhheeCCCceeeeeeeecCCCCEEEEECCCCCCc
Confidence 99999999999999999999998763 45678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 206 TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 206 T~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
|||+.+|+++ .+. +.+||+++|||++|++||++++.+.+.++ ++++|+++.
T Consensus 169 STLL~~I~~~-~~~--d~~vi~~iGeRgrEv~efl~~~~~~~~~~------rtv~vv~ts 219 (433)
T PRK07594 169 STLLAMLCNA-PDA--DSNVLVLIGERGREVREFIDFTLSEETRK------RCVIVVATS 219 (433)
T ss_pred cHHHHHhcCC-CCC--CEEEEEEECCCchHHHHHHHHhhccCCcc------eEEEEEECC
Confidence 9999888764 344 47999999999999999999998888777 999998864
No 37
>PRK06315 type III secretion system ATPase; Provisional
Probab=100.00 E-value=7e-41 Score=323.83 Aligned_cols=207 Identities=29% Similarity=0.446 Sum_probs=181.4
Q ss_pred CCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCC-ceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCcc
Q psy17544 48 PKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSP-RLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIK 126 (266)
Q Consensus 48 ~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~-~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~ 126 (266)
+..+.+|||++|.|.++++.++.. ++|+.|+|...++ .+.+||+++.+ +.+.+++++++.|++.|++|.++|++++
T Consensus 19 ~~~~~~G~v~~i~g~~~~~~~~~~--~~ge~~~i~~~~~~~~~~eVv~~~~-~~~~l~~~~~~~gi~~g~~V~~~g~~~~ 95 (442)
T PRK06315 19 QLTTVVGRITEVVGMLIKAVVPDV--RVGEVCLVKRHGMEPLVTEVVGFTQ-NFVFLSPLGELTGVSPSSEVIPTGLPLH 95 (442)
T ss_pred CcceeccEEEEEECCEEEEEECCc--ccCCEEEEecCCCCEEEEEEEEEcC-CeEEEEEccCCcCCCCCCEEEeCCCccE
Confidence 447789999999999999999864 8999999954221 48999999765 7899999999999999999999999999
Q ss_pred ccCChhhhhhhhcccCccccC--CCCCC-CCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCc
Q psy17544 127 IPVGAETLGRIINVIGEPIDE--RGPID-TDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGV 203 (266)
Q Consensus 127 VpvG~~lLGRViD~~G~PlD~--~~~~~-~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~ 203 (266)
||+|++|||||+|++|+|||+ .+++. ..+++|++.+||+|++|.++++||+||||+||.++|+++|||++|||++|+
T Consensus 96 v~vg~~llGrv~d~~G~pld~~~~~~~~~~~~~~~i~~~~~~~~~R~~~~e~l~TGi~aID~~l~i~~Gq~i~I~G~sG~ 175 (442)
T PRK06315 96 IRAGNGLLGRVLNGLGEPIDTETKGPLENVDETYPIFRAPPDPLHRAKLRTILSTGVRCIDGMLTVARGQRIGIFAGAGV 175 (442)
T ss_pred EEecccccCCEEeccCcccccccCCCcccccceeeeecCCCChHHcccccccccceEEEEeccccccCCcEEEEECCCCC
Confidence 999999999999999999998 76654 335789999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHh-HhcCccccCCCCCceEEEeeccC
Q psy17544 204 GKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEM-IESGVISLKDKSSKVNFLFNSRF 266 (266)
Q Consensus 204 GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l-~~~gvl~~~~~~~~~~~v~~q~~ 266 (266)
|||+|+.+|+++...+ +..||+++|||++|+.+|+++. .+.+ ++ ++++|++++|
T Consensus 176 GKStLl~~I~~~~~~~--~~~vi~liGerg~ev~~~~~~~l~~~g-~~------~svvvvats~ 230 (442)
T PRK06315 176 GKSSLLGMIARNAEEA--DVNVIALIGERGREVREFIEGDLGEEG-MK------RSVIVVSTSD 230 (442)
T ss_pred CcchHHHHhhcccccC--CceEEEEECCCchHHHHHHHHHHHhcC-Cc------eEEEEEeCCC
Confidence 9999999888754223 3688999999999999999874 4433 44 8888887664
No 38
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=7.6e-41 Score=322.94 Aligned_cols=204 Identities=23% Similarity=0.332 Sum_probs=180.3
Q ss_pred CCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCC-ceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCcc
Q psy17544 48 PKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSP-RLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIK 126 (266)
Q Consensus 48 ~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~-~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~ 126 (266)
+..+.+|+|++|.|.++++.++.. ++|+.|+|...++ .+.+||++|. ++.+.+++|++++|++.|++|.+++++++
T Consensus 13 ~~~~~~G~v~~v~g~~~~~~~~~~--~~ge~~~i~~~~~~~~~~eVv~~~-~~~~~l~~~~~~~gi~~g~~v~~~~~~~~ 89 (434)
T PRK07196 13 HLARVAGRLVRVTGLLLESVGCRL--AIGQRCRIESVDETFIEAQVVGFD-RDITYLMPFKHPGGVLGGARVFPSEQDGE 89 (434)
T ss_pred CccceeeEEEEEEcCEEEEecCCC--CcCCEEEEEeCCCceEEEEEEEec-CCEEEEEECCCccCCCCCCEEEECCCccE
Confidence 346778999999999999999974 8999999954233 5899999975 57888999999999999999999999999
Q ss_pred ccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHH
Q psy17544 127 IPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKT 206 (266)
Q Consensus 127 VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT 206 (266)
+|+|++|||||+|++|+|||+.+++..+..++++++||||++|.++++||+||+++||.++|+++|||++|||++|+|||
T Consensus 90 v~vg~~llGrv~d~~G~pld~~~~~~~~~~~~~~~~~~~p~~R~~~~~~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKS 169 (434)
T PRK07196 90 LLIGDSWLGRVINGLGEPLDGKGQLGGSTPLQQQLPQIHPLQRRAVDTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKS 169 (434)
T ss_pred EEcCccccCCeeCcCCCCcCCCCCCCCCceeeccCCCCChHHhcccccccccceeeccceEeEecceEEEEECCCCCCcc
Confidence 99999999999999999999998876666779999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHH-hHhcCccccCCCCCceEEEeec
Q psy17544 207 VLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHE-MIESGVISLKDKSSKVNFLFNS 264 (266)
Q Consensus 207 ~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~-l~~~gvl~~~~~~~~~~~v~~q 264 (266)
||+.+|++. .+. +++|+++||||++|+++|+++ +.+.+ +. |+.++|..
T Consensus 170 TLl~~I~g~-~~~--dv~vig~IGerg~ev~ef~~~~l~~~g-l~------rsvvv~~~ 218 (434)
T PRK07196 170 VLLGMITRY-TQA--DVVVVGLIGERGREVKEFIEHSLQAAG-MA------KSVVVAAP 218 (434)
T ss_pred HHHHHHhcc-cCC--CeEEEEEEeeecHHHHHHHHHHhhhcc-cc------eEEEEEec
Confidence 999887764 444 488899999999999999966 55555 44 67777654
No 39
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=8.8e-41 Score=322.51 Aligned_cols=205 Identities=24% Similarity=0.384 Sum_probs=183.8
Q ss_pred CCCccccEEEEEECcEEEEEecCCCcccccEEEEecCC--CceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCc
Q psy17544 48 PKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRS--PRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPI 125 (266)
Q Consensus 48 ~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~--~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~ 125 (266)
+..+.+|+|++|.|.+++++++.. ++++.|++...+ ..+.+||+++. ++.+.+++|+++.||+.|++|.++++++
T Consensus 14 ~~~~~~G~v~~v~g~~v~~~g~~~--~~ge~~~i~~~~~~~~~~~eVv~~~-~~~~~l~~~~~t~gl~~G~~V~~tg~~~ 90 (434)
T PRK08472 14 NLSPRFGSITKISPTIIEADGLNP--SVGDIVKIESSDNGKECLGMVVVIE-KEQFGISPFSFIEGFKIGDKVFISKEGL 90 (434)
T ss_pred CcceeeeEEEEEEccEEEEEecCC--CCCCEEEEecCCCCCceEEEEEEEe-CCeEEEEEccCCCCCCCCCEEEeCCCce
Confidence 447789999999999999999873 899999995422 34899999965 5789999999999999999999999999
Q ss_pred cccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccH
Q psy17544 126 KIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGK 205 (266)
Q Consensus 126 ~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GK 205 (266)
+||+|++|||||+|++|+|||+.+++...+++|++.+||||++|.+++++|.||+++||.|+|+++|||++|||++|+||
T Consensus 91 ~v~vg~~llGRViD~~G~plD~~g~~~~~~~~~i~~~~~~~~~R~~i~~~l~tgi~aid~l~~i~~Gq~~~i~G~sG~GK 170 (434)
T PRK08472 91 NIPVGRNLLGRVVDPLGRPIDGKGAIDYERYAPIMKAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGK 170 (434)
T ss_pred EEEcChhhcCCEECCCCCcccCCCCCCcccccccccCCCCHHHcCCcceeccchhHHhhhcceecCCCEEEEECCCCCCH
Confidence 99999999999999999999999887766778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 206 TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 206 T~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
|||+.+|+++ ++. +++||+++|||+||+++|+++.. .+.++ ++++|++++
T Consensus 171 StLl~~i~~~-~~~--~v~vi~~iGergrev~e~~~~~l-~~~l~------~tvvV~ats 220 (434)
T PRK08472 171 STLMGMIVKG-CLA--PIKVVALIGERGREIPEFIEKNL-GGDLE------NTVIVVATS 220 (434)
T ss_pred HHHHHHHhhc-cCC--CEEEEEeeCccchhHHHHHHHHh-cCccc------ceEEEEECC
Confidence 9999988875 344 49999999999999999998643 33355 999998875
No 40
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=100.00 E-value=2.9e-40 Score=318.77 Aligned_cols=204 Identities=26% Similarity=0.447 Sum_probs=183.9
Q ss_pred CccccEEEEEECcEEEEEecCCCcccccEEEEecC-CCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCcccc
Q psy17544 50 GKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGR-SPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIP 128 (266)
Q Consensus 50 ~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~-~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~Vp 128 (266)
.+.+|+|++|.|.++++.++.. .+++.|++... +..+.+||+++.+ +.+.+++|++++||+.|++|.+||+++++|
T Consensus 3 ~~~~G~V~~v~g~~v~v~~~~~--~~ge~~~i~~~~~~~~~~eVi~~~~-~~~~l~~~~~~~gl~~G~~V~~tg~~~~v~ 79 (422)
T TIGR02546 3 VRVRGRVTEVSGTLLKAVLPGA--RVGELCLIRRRDPSQLLAEVVGFTG-DEALLSPLGELHGISPGSEVIPTGRPLSIR 79 (422)
T ss_pred cceeEEEEEEECcEEEEEECCC--CCCCEEEEeeCCCCeEEEEEEEEcC-CcEEEEEccCccCCCCCCEEEECCCCceEE
Confidence 4568999999999999998754 78999999632 3458999999865 678899999999999999999999999999
Q ss_pred CChhhhhhhhcccCccccCCCCCCCCC--ccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHH
Q psy17544 129 VGAETLGRIINVIGEPIDERGPIDTDK--SAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKT 206 (266)
Q Consensus 129 vG~~lLGRViD~~G~PlD~~~~~~~~~--~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT 206 (266)
+|++|||||+|++|+|||+.+++.... ++|++++||||++|.++++||.||+++||.++|+++|||++|||++|+|||
T Consensus 80 vg~~lLGrViD~~G~plD~~~~~~~~~~~~~pi~~~~~~~~~R~~i~~~l~tG~~~id~l~~i~~Gq~~~I~G~sG~GKS 159 (422)
T TIGR02546 80 VGEALLGRVLDGFGRPLDGKGELPAGEIETRPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGVGKS 159 (422)
T ss_pred eChhhccCEeCCCCCcccCCCCCCCCCceeeeccCCCcCHHHccCcccccCCCceeehhhccccCCCEEEEECCCCCChH
Confidence 999999999999999999998876653 689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 207 VLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 207 ~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
||+.+|+++ .+. +.++|++||||++|+++|++++...+.++ +++++++++
T Consensus 160 tLl~~I~~~-~~~--~~~vi~~iG~~~~ev~~~~~~~~~~~~~~------~tvvv~~~s 209 (422)
T TIGR02546 160 TLLGMIARG-ASA--DVNVIALIGERGREVREFIEHHLGEEGRK------RSVLVVSTS 209 (422)
T ss_pred HHHHHHhCC-CCC--CEEEEEEEccCCcCHHHHHHHHhcccccc------ceEEEeccc
Confidence 999888774 333 48999999999999999999998888877 999988764
No 41
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=100.00 E-value=5.9e-41 Score=306.81 Aligned_cols=135 Identities=27% Similarity=0.429 Sum_probs=125.9
Q ss_pred CccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCc
Q psy17544 124 PIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGV 203 (266)
Q Consensus 124 ~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~ 203 (266)
+++||+|++|||||+|++|+|||+.+++....++|++.+||+|++|.+++|||+||||+||+|+|||||||+||||++|+
T Consensus 1 ~~~Vpvg~~lLGRVvd~lG~piD~~~~~~~~~~~~i~~~ap~~~~R~~i~e~l~TGIkaID~l~pig~GQR~gIfgg~Gv 80 (276)
T cd01135 1 TLKVPVSEDMLGRIFNGSGKPIDGGPEILAEEYLDINGPPINPVARIYPEEMIQTGISAIDGMNTLVRGQKIPIFSGSGL 80 (276)
T ss_pred CcEEECChhhcCCEECCCCCCCCCCCCCCCCceeeccCCCcCchhcCCcccccccCcEeeecccccccCCEEEeecCCCC
Confidence 46899999999999999999999998876677889999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHh----cCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 204 GKTVLIMELINNVAK----AHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 204 GKT~L~~~ii~~~a~----~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
|||+|+.+|+++ ++ .+.++|||++||||+||++||++++.+.++++ |+++|++|+
T Consensus 81 GKt~L~~~i~~~-~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~------~tv~v~~t~ 139 (276)
T cd01135 81 PHNELAAQIARQ-AGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALE------RVVLFLNLA 139 (276)
T ss_pred ChhHHHHHHHHh-hhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcc------eEEEEEecC
Confidence 999999998875 43 12459999999999999999999999999998 999999986
No 42
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.2e-39 Score=315.48 Aligned_cols=206 Identities=22% Similarity=0.393 Sum_probs=179.2
Q ss_pred CCCccccEEEEEECcEEEEEecCCCcccccEEEEecC-CC--ceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCC
Q psy17544 48 PKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGR-SP--RLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNP 124 (266)
Q Consensus 48 ~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~-~~--~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~ 124 (266)
+..+.+|+|++|.|.+++++++.. ++++.|++... +. .+.+||++|.+ +++.+++|+++.||++|++|.+||++
T Consensus 14 ~~~~~~G~v~~i~G~~i~~~~~~~--~ige~~~i~~~~~~~~~~~~EVi~~~~-~~~~l~~~~~~~gl~~g~~V~~tg~~ 90 (438)
T PRK07721 14 DPYKRYGKVSRVIGLMIESKGPES--SIGDVCYIHTKGGGDKAIKAEVVGFKD-EHVLLMPYTEVAEIAPGCLVEATGKP 90 (438)
T ss_pred CccceecEEEEEECcEEEEEECCC--CchheEEEEecCCCCceEEEEEEEEcC-CEEEEEEccCccCCCCCCEEEECCCc
Confidence 446789999999999999999864 79999998522 22 48999999876 56889999999999999999999999
Q ss_pred ccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCcc
Q psy17544 125 IKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVG 204 (266)
Q Consensus 125 ~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~G 204 (266)
++||+|++|||||+|++|+|||+.+......++|++.+||||++|.+++++|.||+++||.++++++|||++|||++|+|
T Consensus 91 ~~v~vg~~llGRv~d~~G~plD~~~~~~~~~~~~i~~~~p~p~~R~~i~~~l~tg~~vid~l~~i~~Gq~i~I~G~sG~G 170 (438)
T PRK07721 91 LEVKVGSGLIGQVLDALGEPLDGSALPKGLAPVSTDQDPPNPLKRPPIREPMEVGVRAIDSLLTVGKGQRVGIFAGSGVG 170 (438)
T ss_pred cEEEechhhcCCEECcCCCccCCCCCCCccccCCccCCCCChhhccCcccccccchhhhheeeeecCCcEEEEECCCCCC
Confidence 99999999999999999999998874444456799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 205 KTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 205 KT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
||||+.+|++. .+. +..+|+++|||++|++||+++......+. |+++|++++
T Consensus 171 KStLl~~I~~~-~~~--~~gvI~~~Gerg~ev~e~~~~~l~~~~l~------r~v~vv~~~ 222 (438)
T PRK07721 171 KSTLMGMIARN-TSA--DLNVIALIGERGREVREFIERDLGPEGLK------RSIVVVATS 222 (438)
T ss_pred HHHHHHHHhcc-cCC--CeEEEEEEecCCccHHHHHHhhcChhhhc------CeEEEEECC
Confidence 99999877764 333 47899999999999999998843333355 888888764
No 43
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=2.3e-39 Score=312.46 Aligned_cols=203 Identities=26% Similarity=0.333 Sum_probs=180.6
Q ss_pred CCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccc
Q psy17544 48 PKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKI 127 (266)
Q Consensus 48 ~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~V 127 (266)
+..+.+|+|++|.|.++++.++.. ++|+.|++. ++.+.+||+++.+ +.+.+++|++++||+.|++|.+++++++|
T Consensus 17 ~~~~~~g~v~~~~g~~~~~~g~~~--~ige~~~i~--~~~~~~eV~~~~~-~~~~~~~~~~~~gi~~g~~v~~~~~~~~v 91 (432)
T PRK06793 17 PFYTKVGKVHSVQEQFFVAKGPKA--KIGDVCFVG--EHNVLCEVIAIEK-ENNMLLPFEQTEKVCYGDSVTLIAEDVVI 91 (432)
T ss_pred CccceeeEEEEEEEEEEEEEcCCC--CcCCEEEEC--CCCEEEEEEEecC-CcEEEEEccCccCCCCCCEEEECCCccEE
Confidence 346778999999999999999865 799999994 3347899999865 57789999999999999999999999999
Q ss_pred cCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHH
Q psy17544 128 PVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV 207 (266)
Q Consensus 128 pvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~ 207 (266)
|+|++|||||+|++|+|+|+.+++...+++|++++||+|++|..+++++.||+++||.++|+++|||++|||++|+|||+
T Consensus 92 ~vg~~~lGrV~d~~G~piD~~~~~~~~~~~~i~~~~~~~~~r~~i~~~l~TGiraID~ll~I~~Gqri~I~G~sG~GKTt 171 (432)
T PRK06793 92 PRGNHLLGKVLSANGEVLNEEAENIPLQKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKST 171 (432)
T ss_pred EcCHhhccCEECcCCccCCCCCCCCCcccccccCCCCCchheechhhccCCCCEEEeccceecCCcEEEEECCCCCChHH
Confidence 99999999999999999999877655567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHH-HhHhcCccccCCCCCceEEEeecc
Q psy17544 208 LIMELINNVAKAHGGYSVFAGVGERTREGNDLYH-EMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 208 L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~-~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
|+.+++.+. +. +..+++++|||++|++||++ .+.+.| ++ ++++|+++.
T Consensus 172 Ll~~Ia~~~-~~--~~gvI~~iGerg~ev~e~~~~~l~~~g-l~------~tvvv~~ts 220 (432)
T PRK06793 172 LLGMIAKNA-KA--DINVISLVGERGREVKDFIRKELGEEG-MR------KSVVVVATS 220 (432)
T ss_pred HHHHHhccC-CC--CeEEEEeCCCCcccHHHHHHHHhhhcc-cc------eeEEEEECC
Confidence 999998864 44 47889999999999999987 565665 65 788887653
No 44
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=100.00 E-value=4.1e-40 Score=301.45 Aligned_cols=136 Identities=79% Similarity=1.242 Sum_probs=128.8
Q ss_pred CccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCc
Q psy17544 124 PIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGV 203 (266)
Q Consensus 124 ~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~ 203 (266)
+++||+|++|||||+|++|+|||+.+++...++||+++++|||++|.++++||+||||+||+|+|||||||++|||++|+
T Consensus 1 ~~~vpvg~~llGRv~d~~G~piD~~~~~~~~~~~~i~~~~p~~~~R~~~~e~L~TGIr~ID~l~pig~GQr~~If~~~G~ 80 (274)
T cd01133 1 PISVPVGPETLGRIFNVLGEPIDERGPIKTKKTWPIHREAPEFVEQSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGV 80 (274)
T ss_pred CcEEecChhhcCCEECCCCCccCCCCCCCccccccccCCCCCchhhcCcCcccccCceeeeccCCcccCCEEEEecCCCC
Confidence 57899999999999999999999998877777899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 204 GKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 204 GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
|||+|+.++++++.+.+.+++||++||||+||++||++++.+.++++ |+++|++++
T Consensus 81 GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~------~tvvv~~t~ 136 (274)
T cd01133 81 GKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLS------KTALVYGQM 136 (274)
T ss_pred ChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcc------eeEEEEECC
Confidence 99999999999886555679999999999999999999999999988 999999986
No 45
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=9.5e-39 Score=309.05 Aligned_cols=211 Identities=27% Similarity=0.387 Sum_probs=182.8
Q ss_pred ccccccCCCCccccEEEEEECcEEEEEecC-CCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEE
Q psy17544 41 HYAAKAAPKGKGNGRVVAVIGAVVDVQFDH-DLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVA 119 (266)
Q Consensus 41 ~~~~~~~~~~~~~GrV~~I~G~vV~v~~~~-~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~ 119 (266)
.|.| +.+..+.+|+|++|.|.++++.+++ .+ ++|+.|+|..+++...+||+++. ++++.+++|+++.||+.|++|.
T Consensus 16 ~~~~-~~~~~~~~G~v~~v~g~~~~~~g~~~~~-~iGe~~~i~~~~~~~~~eVv~~~-~~~~~l~~~~~~~gi~~g~~v~ 92 (450)
T PRK06002 16 RYAA-PEPLVRIGGTVSEVTASHYRVRGLSRFV-RLGDFVAIRADGGTHLGEVVRVD-PDGVTVKPFEPRIEIGLGDAVF 92 (450)
T ss_pred hccc-ccCccceeEEEEEEeceEEEEEcCccCC-CCCCEEEEECCCCcEEEEEEEEe-CCeEEEEEccCCcCCCCCCEEE
Confidence 5555 2345788999999999999999994 33 89999999643445889999975 5788999999999999999999
Q ss_pred ecCCCccccCChhhhhhhhcccCccccCCCCCCCCC-ccccccCcccccccccccccccccceEeecccccccCceeeee
Q psy17544 120 DSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDK-SAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLF 198 (266)
Q Consensus 120 ~tg~~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~-~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIf 198 (266)
. ++++++++|++|||||+|++|+|||+.+++...+ ++|++.+|||+++|..+++++.||+++||.|+||++|||++||
T Consensus 93 ~-~~~~~v~vg~~llGRV~d~~G~piDg~~~~~~~~~~~~i~~~~p~~~~r~~v~~~l~TGi~aID~L~~I~~Gqri~I~ 171 (450)
T PRK06002 93 R-KGPLRIRPDPSWKGRVINALGEPIDGLGPLAPGTRPMSIDATAPPAMTRARVETGLRTGVRVIDIFTPLCAGQRIGIF 171 (450)
T ss_pred e-CCCceeecCcccccCEECCCCcCCCCCCCCCCCcceeeccCCCCCCeEeecceEEcCCCcEEeeeeceecCCcEEEEE
Confidence 9 6799999999999999999999999998876644 5799999999999999999999999999999999999999999
Q ss_pred cCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 199 GGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 199 gg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
|++|+|||||+.+|+.. . +.+..+|+++|||++|+++|+++....- ++ +++.++.|+
T Consensus 172 G~SGsGKTTLL~~Ia~l-~--~pd~gvv~liGergrev~e~~~~~l~~~-r~------rtI~vV~qs 228 (450)
T PRK06002 172 AGSGVGKSTLLAMLARA-D--AFDTVVIALVGERGREVREFLEDTLADN-LK------KAVAVVATS 228 (450)
T ss_pred CCCCCCHHHHHHHHhCC-C--CCCeeeeeecccCCccHHHHhHHHHHHh-hC------CeEEEEEcC
Confidence 99999999999877653 2 3348899999999999999998765432 44 778888775
No 46
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=4.5e-38 Score=299.89 Aligned_cols=202 Identities=26% Similarity=0.453 Sum_probs=186.3
Q ss_pred CccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccC
Q psy17544 50 GKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPV 129 (266)
Q Consensus 50 ~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~Vpv 129 (266)
.+..|+|++|...+++|+|.+++ ..++.+++.++ ..+ ++..++++.|.+.++++...|+.|+.|..||+.++||+
T Consensus 25 ~~~~g~V~sv~DgIa~v~Gl~~~-~~~E~~ef~~~---v~G-~alnle~d~VG~vi~g~~~~i~eG~~v~~Tg~i~~Vpv 99 (504)
T COG0056 25 VKEVGTVISVGDGIARVSGLENV-MAGELVEFPGG---VKG-MALNLEEDSVGAVILGDYSDIKEGDEVKRTGRILEVPV 99 (504)
T ss_pred hhccceEEEEecceEEEecCchh-hcCceEEecCC---cEE-EEEeccccceeEEEecCCccccCCcEEEeeCceEEEec
Confidence 44579999999999999999876 77888998743 344 44457899999999999999999999999999999999
Q ss_pred ChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHHH
Q psy17544 130 GAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLI 209 (266)
Q Consensus 130 G~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L~ 209 (266)
|+++||||+|++|+|+|+.+++..+.+.|++..+|..++|.+++|||+|||++||+|+|||||||.+|+|+.++|||.++
T Consensus 100 g~~llGRVVn~lG~pidgkg~i~~~~~~~~e~~Apgv~~RksV~ePlqTGikaIDamiPIGRGQRELIIGDRQTGKTaIA 179 (504)
T COG0056 100 GEELLGRVVDALGNPIDGKGPIDATKTRPVEKKAPGVMDRKSVNEPLQTGIKAIDALIPIGRGQRELIIGDRQTGKTAIA 179 (504)
T ss_pred chhhcceeecCCCCccCCCCCccccccCccccccCceecccccCchhhhhhHHHhhhcccCCCceEEEeccCcCCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEee
Q psy17544 210 MELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFN 263 (266)
Q Consensus 210 ~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~ 263 (266)
.+.|.|| +..+.+|||++||++...+..+++.|++.|+|+ .|.+|..
T Consensus 180 idtIiNQ-k~~~v~CIYVAIGQK~stva~vv~tL~e~gAmd------yTiVV~A 226 (504)
T COG0056 180 IDTIINQ-KGSGVKCIYVAIGQKRSTVANVVRTLEEHGAMD------YTIVVAA 226 (504)
T ss_pred HHHHHhc-ccCCcEEEEEEcccchHHHHHHHHHHHHcCCcc------ceEEEEe
Confidence 9999997 566679999999999999999999999999998 7776653
No 47
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=100.00 E-value=1.1e-38 Score=291.78 Aligned_cols=134 Identities=27% Similarity=0.533 Sum_probs=122.2
Q ss_pred ccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCcc
Q psy17544 125 IKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVG 204 (266)
Q Consensus 125 ~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~G 204 (266)
++||+|++|||||+|++|+|||+.+++...++||++.++|+|++|.++++||+||||+||+|+|||||||++|||++|+|
T Consensus 2 ~~vpvg~~lLGRvld~~G~piD~~~~~~~~~~~~i~~~~p~~~~R~~i~e~L~TGI~~ID~l~pigrGQr~~Ifg~~g~G 81 (274)
T cd01132 2 ADVPVGEALLGRVVDALGNPIDGKGPIETKERRPIESKAPGIIPRKSVNEPLQTGIKAIDAMIPIGRGQRELIIGDRQTG 81 (274)
T ss_pred eEEECCHhhCCCEEccCCCCccCCCCcCcCceeeccCCCCChhhcCCcccccccCCEEeeccCCcccCCEEEeeCCCCCC
Confidence 57999999999999999999999988777778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 205 KTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 205 KT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
||+|+.+++.|+++ ++.++||++||||+||++||++++.+.++++ |+++|++++
T Consensus 82 Kt~L~l~~i~~~~~-~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~------~tvvv~~t~ 135 (274)
T cd01132 82 KTAIAIDTIINQKG-KKVYCIYVAIGQKASTVAQVVKTLEEHGAME------YTIVVAATA 135 (274)
T ss_pred ccHHHHHHHHHhcC-CCeEEEEEecccchHHHHHHHHHHHhcCccc------eeEEEEeCC
Confidence 99995445444543 3356799999999999999999999999988 999999885
No 48
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=100.00 E-value=5.7e-34 Score=269.23 Aligned_cols=198 Identities=24% Similarity=0.325 Sum_probs=182.4
Q ss_pred CccccEEEEEECcEEEEEecCCCcccccEEEEecCCC-ceEEEEeeeeCCceeEEEeccCCCCCCCCCE-EEecCCCccc
Q psy17544 50 GKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSP-RLVLEVAQHLGENTVRTIAMDGTEGLVRGQV-VADSGNPIKI 127 (266)
Q Consensus 50 ~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~-~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~-V~~tg~~~~V 127 (266)
.+.+-+|+.|.|+++.|++-++. ..++.++|...++ ...++|+.. ..+.+.+|+|++|.|+...+. |+++|+++++
T Consensus 4 ~~~Y~~i~~i~Gplv~ve~~eg~-~y~E~v~i~~~~G~~r~gqVle~-~~~~a~vQVfegT~Gl~~~~t~vrF~g~~l~i 81 (463)
T COG1156 4 VKEYTTISEIKGPLIIVEGVEGA-SYGELVEIETPDGEVRRGQVLEV-RGDKAVVQVFEGTSGLDTKGTTVRFTGETLKI 81 (463)
T ss_pred cceeeeEEEeccceEEEecccCC-CcceEEEEECCCCCeeeeeEeec-cCceEEEEEeecccCCCCCCceEEEeCceEEE
Confidence 45678999999999999987765 7899999988665 568889885 567888999999999996655 9999999999
Q ss_pred cCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHH
Q psy17544 128 PVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV 207 (266)
Q Consensus 128 pvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~ 207 (266)
++++++||||+|++|+|||+.+.+.+++...|++.|.||..|..++++++|||++||+|+++.+|||++||++||..++.
T Consensus 82 ~vs~dllGRifnG~G~PiDggp~i~~e~~~dI~g~~~NP~aR~yP~efIqTgIsaIDg~NtLvrgQKlPIFSgSGlphN~ 161 (463)
T COG1156 82 PVSEDLLGRIFNGSGKPIDGGPEIVPEDRLDINGAPINPYARIYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNE 161 (463)
T ss_pred eecHHhhhhhhcCCCCcCCCCCcCCCCcccccCCCCCCchhhhChhhHhhcCccHHhhhhhhhcccccccccCCCCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCc----EEEEEeecCCchHHHHHHHHhHhcCccc
Q psy17544 208 LIMELINNVAKAHGG----YSVFAGVGERTREGNDLYHEMIESGVIS 250 (266)
Q Consensus 208 L~~~ii~~~a~~~~~----v~V~alIGER~rEv~ef~~~l~~~gvl~ 250 (266)
|+++|++ ||+..++ .+||+++|-...|.+.|.++|.+.|+++
T Consensus 162 LaaqIar-QA~v~~~~e~favVfaamGit~eea~fF~~~fe~tGal~ 207 (463)
T COG1156 162 LAAQIAR-QATVDGEEEEFAVVFAAMGITHEEALFFMDEFEETGALD 207 (463)
T ss_pred HHHHHHH-hcccCCCccceeEEEeecCccHHHHHHHHHHHHhhhhhh
Confidence 9999998 6765442 7999999999999999999999999998
No 49
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=100.00 E-value=1.4e-33 Score=272.93 Aligned_cols=203 Identities=25% Similarity=0.358 Sum_probs=170.5
Q ss_pred ccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccCChh
Q psy17544 53 NGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAE 132 (266)
Q Consensus 53 ~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~VpvG~~ 132 (266)
.|+|++|.|++|.+++.... .+++.|+| ++..+.+||+++.| +++.+|+|++|.||++|++|..||+|+++.+||.
T Consensus 2 ~G~i~~isGp~V~a~gm~~~-~my~~v~V--g~~~L~gEiI~i~g-d~a~iQVyE~T~Gi~~Ge~V~~Tg~pLsvELGPG 77 (588)
T COG1155 2 MGKIIRISGPVVVAEGMEGA-KMYDVVKV--GEMGLIGEIIRIEG-NRATIQVYEDTAGIRPGEKVENTGRPLSVELGPG 77 (588)
T ss_pred CceEEEEECCEEEEecCcCC-ceEEEEEE--cCCceeEEEEEEeC-CeEEEEEEeecCCCCCCCeeecCCCceEEEeCcc
Confidence 69999999999999988765 77888888 55689999999755 7899999999999999999999999999999999
Q ss_pred hhhhhhcccCccccCC--------------CCCCCCCc------------------------------------------
Q psy17544 133 TLGRIINVIGEPIDER--------------GPIDTDKS------------------------------------------ 156 (266)
Q Consensus 133 lLGRViD~~G~PlD~~--------------~~~~~~~~------------------------------------------ 156 (266)
||+.|+|+++||||.. ++++.+..
T Consensus 78 ll~~IyDGiQrPL~~i~e~sg~Fi~RGv~~p~Ldr~~kW~F~P~~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v 157 (588)
T COG1155 78 LLKSIYDGIQRPLDVIKETSGDFIARGLNPPALDRKKKWDFVPAVKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKV 157 (588)
T ss_pred HHhhhhhhccChHHHHHHHhhhHhhcCCCCCCCCcccccccccccccCCEeccCceEEEeccCCceEEEEeCCCCCceEE
Confidence 9999999999999752 12222111
Q ss_pred --------------------------------cccccCcccccccccccccccccceEeecccccccCceeeeecCCCcc
Q psy17544 157 --------------------------------AAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVG 204 (266)
Q Consensus 157 --------------------------------~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~G 204 (266)
||+..+- +..++.++++||.||+|+||+|||+.||+..+|.||+|+|
T Consensus 158 ~~i~~~G~ytv~d~ia~v~~~~g~~~~~m~~~WPVR~~r-p~~eKl~p~~Pl~TGqRviDt~FPvaKGGTaaiPGpFGsG 236 (588)
T COG1155 158 TWIAEEGEYTVEDVIATVSTEGGEVDVQMMTTWPVRKAR-PVKRKLPPEIPLVTGQRVIDTLFPVAKGGTAAVPGPFGSG 236 (588)
T ss_pred EEEecCCCceeeEEEEEEecCCCeEEEEEEEeccccCCc-cccccCCCCCcccccceeehhhcccccCccccccCCCCCC
Confidence 1121111 1256678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccc-cCCCCCceEEEee
Q psy17544 205 KTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVIS-LKDKSSKVNFLFN 263 (266)
Q Consensus 205 KT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~-~~~~~~~~~~v~~ 263 (266)
||++.+++++ ++++| ++||++||||++|++|.+.+|++.--=. .+..+.+|.++++
T Consensus 237 KTV~qh~laK-~sdad--iVVyigCGERGNEmtevL~eFPeL~Dp~tg~~lm~RT~liaN 293 (588)
T COG1155 237 KTVSQHTLSK-LADGD--IVIYVGCGERGNEMTEVLQEFPELKDPNTGQPLMDRTVLIAN 293 (588)
T ss_pred cEehhhhhhh-hccCC--EEEEEecCCccchHHHHHHhCccccCCCCCCcccceeeEeec
Confidence 9999999999 46665 9999999999999999999999865421 4667788888875
No 50
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=99.96 E-value=1.8e-30 Score=243.16 Aligned_cols=133 Identities=29% Similarity=0.571 Sum_probs=123.5
Q ss_pred CccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCc
Q psy17544 124 PIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGV 203 (266)
Q Consensus 124 ~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~ 203 (266)
+++||+|++|||||+|++|+|||+.+++...+++|++.+||+|++|.+++++|.||+++||.++|+++|||++|||++|+
T Consensus 1 ~~~v~vg~~~lGrv~d~~G~pid~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~tGi~aiD~l~~i~~Gqri~I~G~sG~ 80 (326)
T cd01136 1 PLSVPVGDALLGRVLDAFGEPLDGKGPLGKEVRYPLLRTPPNPLKRRPIDEVLPTGVRAIDGLLTVGKGQRLGIFAGSGV 80 (326)
T ss_pred CceeeCCcccccCEECCCCcccCCCCCCCCCccccccCCCcCHHHhccceeEcCCCcEEEeeeeEEcCCcEEEEECCCCC
Confidence 47899999999999999999999998876667889999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 204 GKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 204 GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
|||||+.+|+++ ... +.++|++||||++|++||++++.+.+.++ |+++|++++
T Consensus 81 GKTtLl~~Ia~~-~~~--~~~vi~~iGer~~ev~~~~~~~~~~~~l~------rtvvv~~t~ 133 (326)
T cd01136 81 GKSTLLGMIARG-TTA--DVNVIALIGERGREVREFIEKDLGEEGLK------RSVVVVATS 133 (326)
T ss_pred ChHHHHHHHhCC-CCC--CEEEEEEEecCCccHHHHHHHHHhcCccc------eEEEEEcCC
Confidence 999999888764 333 48999999999999999999999999888 999999886
No 51
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=99.96 E-value=1.8e-30 Score=244.36 Aligned_cols=105 Identities=27% Similarity=0.356 Sum_probs=94.3
Q ss_pred cccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHH
Q psy17544 157 AAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREG 236 (266)
Q Consensus 157 ~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv 236 (266)
||++.++|++ +|..+++||.||||+||+|+||+||||++|||++|+|||+|+++|+++ +++ +++||++||||+||+
T Consensus 123 ~Pv~~~~P~~-~r~~~~~pL~TGirvID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~-~~~--dvvVyv~iGERg~Ev 198 (369)
T cd01134 123 WPVRQPRPVK-EKLPPNEPLLTGQRVLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKY-SNS--DIVIYVGCGERGNEM 198 (369)
T ss_pred eecccCCCcc-ccCCCCCchhccchhhhccccccCCCEEEEECCCCCChHHHHHHHHhC-CCC--CEEEEEEeCCChHHH
Confidence 4667777777 999999999999999999999999999999999999999999999885 555 499999999999999
Q ss_pred HHHHHHhHhcCcccc-CCCCCceEEEeecc
Q psy17544 237 NDLYHEMIESGVISL-KDKSSKVNFLFNSR 265 (266)
Q Consensus 237 ~ef~~~l~~~gvl~~-~~~~~~~~~v~~q~ 265 (266)
+||+++|++.....+ ++.++||++|++++
T Consensus 199 ~e~l~ef~~l~~~~~~~~~m~rtvlV~nts 228 (369)
T cd01134 199 TEVLEEFPELTDPVTGEPLMKRTVLIANTS 228 (369)
T ss_pred HHHHHHHHhhccccccCCccceEEEEEECC
Confidence 999999998776653 67788999999985
No 52
>KOG1351|consensus
Probab=99.96 E-value=1.1e-29 Score=233.17 Aligned_cols=216 Identities=22% Similarity=0.344 Sum_probs=184.1
Q ss_pred cccccccccccCCCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCC-ceEEEEeeeeCCceeEEEeccCCCCCC-
Q psy17544 36 FTINKHYAAKAAPKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSP-RLVLEVAQHLGENTVRTIAMDGTEGLV- 113 (266)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~-~l~~EVv~~l~~~~v~l~~~~~t~Gl~- 113 (266)
.++.|+|..+|.. .+-+|..|.|++|....-. .|...+.+.+.-.++ .-.++|..+.| +.+.+++|++|.|+-
T Consensus 10 ~a~~~~~~~~prl---~y~tv~gvngplvild~vk-fp~y~eiv~ltlpdgt~r~gqvlev~g-~kavvqvfegtsgid~ 84 (489)
T KOG1351|consen 10 TAVIENYTTEPRL---TYRTVSGVNGPLVILDKVK-FPKYAEIVNLTLPDGSVRSGQVLEVSG-EKAVVQVFEGTSGIDA 84 (489)
T ss_pred HHHHhccccCCce---eEeeecccCCceEEEeccc-ccchhhheEEecCCCCeecceEEEecC-CeeEEEEecccccccc
Confidence 5667999998754 4778999999999765433 345566665544333 23456666554 566799999999998
Q ss_pred CCCEEEecCCCccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCc
Q psy17544 114 RGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGG 193 (266)
Q Consensus 114 ~G~~V~~tg~~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQ 193 (266)
..+.|++||+.++.||++++||||+|+.|+|||.++++-.+++..|.+.|+||..|-+++|++.|||.+||.|++|++||
T Consensus 85 k~t~~eftg~~lr~pvsedmlgrifngsgkpid~gp~vl~edyldi~gqpinp~~riypeemiqtgis~idvmnsiargq 164 (489)
T KOG1351|consen 85 KKTTVEFTGEILRTPVSEDMLGRIFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQ 164 (489)
T ss_pred ccceEEEecccccccccHHHhhhhhcCCCCccCCCCCcChHHhhccCCCcCCcccccChHHHHHhCchHHhhhhHHhccC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCCccHHHHHHHHHHHHHh-----------cC--CcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEE
Q psy17544 194 KIGLFGGAGVGKTVLIMELINNVAK-----------AH--GGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNF 260 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~~a~-----------~~--~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~ 260 (266)
|++||+.+|..++.++.+|++ |+. .| +-.+|||++|-.-+..+.|.++|+|.|.++ ++.|
T Consensus 165 kipifsaaglphneiaaqicr-qaglvk~~~k~~~d~~~dnfaivfaamgvnmetarffk~dfeengsm~------~v~l 237 (489)
T KOG1351|consen 165 KIPIFSAAGLPHNEIAAQICR-QAGLVKRPEKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSME------RVCL 237 (489)
T ss_pred ccceeecCCCChhHHHHHHHH-hcCccccCCcccccccccceeeeehhhcccHHHHHHHHhhHHhcCCcc------ceEE
Confidence 999999999999999999998 441 01 127999999999999999999999999998 7777
Q ss_pred Eee
Q psy17544 261 LFN 263 (266)
Q Consensus 261 v~~ 263 (266)
+.+
T Consensus 238 fln 240 (489)
T KOG1351|consen 238 FLN 240 (489)
T ss_pred EEe
Confidence 654
No 53
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=99.96 E-value=1.3e-28 Score=257.44 Aligned_cols=151 Identities=25% Similarity=0.369 Sum_probs=125.6
Q ss_pred cccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccCCh
Q psy17544 52 GNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGA 131 (266)
Q Consensus 52 ~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~VpvG~ 131 (266)
.+|+|++|.|+++++.++..+ ++|+.|+|. +..+.+||+++. ++.+.+++|+++.||+.|++|.++++++++++|+
T Consensus 3 ~~G~V~~V~G~lv~a~g~~~~-~iGE~v~I~--~~~l~gEVIg~~-~d~a~iq~~e~t~Gl~~G~~V~~tg~~l~V~lG~ 78 (1017)
T PRK14698 3 AKGRIIRVTGPLVIADGMKGA-KMYEVVRVG--ELGLIGEIIRLE-GDKAVIQVYEETAGLKPGEPVEGTGSSLSVELGP 78 (1017)
T ss_pred CceEEEEEEcCEEEEecCcCC-CCCCEEEEC--CCcEEEEEEEEe-CCEEEEEECCCCCCCCCCCEEEEcCCcceeecCH
Confidence 479999999999999998544 899999993 345899999975 5788899999999999999999999999999999
Q ss_pred hhhhhhhcccCccccCC--------------CCCCCCCcc----------------------------------------
Q psy17544 132 ETLGRIINVIGEPIDER--------------GPIDTDKSA---------------------------------------- 157 (266)
Q Consensus 132 ~lLGRViD~~G~PlD~~--------------~~~~~~~~~---------------------------------------- 157 (266)
+|||||+|++|+||+.. ++++.++.|
T Consensus 79 ~LLGRV~DGlGrPL~~~~~~~~~~i~~g~~~~~l~~~~~w~f~p~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~ 158 (1017)
T PRK14698 79 GLLTSIYDGIQRPLEVIREKSGDFIARGISAPALPRDKKWHFIPKVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGE 158 (1017)
T ss_pred HHhhcccCCCCChHHHHHHHhcccccCCCCCCCCCCCCeeeeEeeeecCCCccCCCEEEEEecCCceeEeEecCCCCCEE
Confidence 99999999999999752 122222211
Q ss_pred -----------------------------------ccccCcccccccccccccccccceEeecccccccCceeeeecCCC
Q psy17544 158 -----------------------------------AIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAG 202 (266)
Q Consensus 158 -----------------------------------pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G 202 (266)
|+.. |-+..++.+++.||.||+|+||+||||+||++.+|+|++|
T Consensus 159 ~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~wpvr~-~r~~~~~~~~~~pl~tgqrv~d~~fp~~~ggt~~~~G~~G 237 (1017)
T PRK14698 159 IVEIADEGEYTIEEVIAKVKTPSGEIKELKMYQRWPVRV-KRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFG 237 (1017)
T ss_pred EEEEcCCCCcceeeEEEEEEcCCCCEEEeeeEecCCCCC-CCcccccCCCCcccccccchHhhhhhhhcCceeEeccCCC
Confidence 1111 1123567788999999999999999999999999999999
Q ss_pred ccHHH
Q psy17544 203 VGKTV 207 (266)
Q Consensus 203 ~GKT~ 207 (266)
+|||+
T Consensus 238 ~GKCV 242 (1017)
T PRK14698 238 SGKCV 242 (1017)
T ss_pred cCccc
Confidence 99943
No 54
>KOG1352|consensus
Probab=99.96 E-value=4.6e-30 Score=242.28 Aligned_cols=206 Identities=23% Similarity=0.375 Sum_probs=169.7
Q ss_pred CccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccC
Q psy17544 50 GKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPV 129 (266)
Q Consensus 50 ~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~Vpv 129 (266)
.+.+|+|.+|+|+||.++...++ ..+++++| +...+.+||+++ +.+.+.+|++++|.|+..||+|..||+|+++.+
T Consensus 18 es~~G~v~~VSGPVV~a~~M~G~-aMYELVrV--Gh~~LvGEiIrl-egD~aTIQVYEeTsG~tVgDpvlrTgkPLsvEL 93 (618)
T KOG1352|consen 18 ESEYGRVYSVSGPVVVAENMAGC-AMYELVRV--GHDELVGEIIRL-EGDMATIQVYEETSGLTVGDPVLRTGKPLSVEL 93 (618)
T ss_pred hhccceEEeccCceEehhcccch-HHHHHHHc--chHhhhhheeEe-cCceeEEEEEeccCCcccCCchhhcCCcceEee
Confidence 45689999999999999877554 67788887 456799999995 557999999999999999999999999999999
Q ss_pred ChhhhhhhhcccCccccCCCC---------------CCCC---Ccc----------------------------------
Q psy17544 130 GAETLGRIINVIGEPIDERGP---------------IDTD---KSA---------------------------------- 157 (266)
Q Consensus 130 G~~lLGRViD~~G~PlD~~~~---------------~~~~---~~~---------------------------------- 157 (266)
||.++|.|+|++.|||..... ++.+ ++.
T Consensus 94 GPGimgsIfDGIQRPLk~I~~~s~siyiPkGv~~~aL~r~~~weF~p~k~~vg~hitGGDiyg~V~ENsli~hki~lpPr 173 (618)
T KOG1352|consen 94 GPGIMGSIFDGIQRPLKDISELSQSIYIPKGVNTPALDREIKWEFTPGKLRVGDHITGGDIYGSVFENSLIKHKILLPPR 173 (618)
T ss_pred CcchhhhhhhhhhhhHHHHHHhcCcEeccCCCCccccCccceeecccceeeecceeecCceEEEeeccchhhceeecCCc
Confidence 999999999999999954211 1111 011
Q ss_pred --------------------------------------ccccCcccccccccccccccccceEeecccccccCceeeeec
Q psy17544 158 --------------------------------------AIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFG 199 (266)
Q Consensus 158 --------------------------------------pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfg 199 (266)
|+.. |-+..+..+.+.||.||.|++|+|+||..|+...|.|
T Consensus 174 ~~Gtvt~iAp~G~Y~~~d~vlE~Ef~g~k~~~tmlq~WPVR~-pRPv~ekl~an~PLltGQRvLDalfPcVqGGTtaIPG 252 (618)
T KOG1352|consen 174 ARGTVTYIAPAGNYTLDDVVLELEFDGEKTKFTMLQTWPVRQ-PRPVTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPG 252 (618)
T ss_pred cCceEEEEecCCccccccEEEEEeecCceeeEEEEEecccCC-CcchhhccCCCCcccccchHHHhhcchhcCCccccCc
Confidence 1110 1112455667899999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCcc-c--cCCCCCceEEEee
Q psy17544 200 GAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVI-S--LKDKSSKVNFLFN 263 (266)
Q Consensus 200 g~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl-~--~~~~~~~~~~v~~ 263 (266)
..|||||++-+.+.+. +.. |++||++||||++|+.|.+.+|++..+. + -.++++||+||.+
T Consensus 253 AFGCGKTVISQsLSKY-SNS--D~iiYVGCGERGNEMsEVL~dFPeLt~ev~G~~esiMKRT~LVAN 316 (618)
T KOG1352|consen 253 AFGCGKTVISQSLSKY-SNS--DAIIYVGCGERGNEMSEVLMDFPELTMEVDGKTESIMKRTALVAN 316 (618)
T ss_pred ccccchHHHHHHHhhc-cCC--CeEEEEcccccchhHHHHHHhChhhEEecCCcchhhhhhhhhhhc
Confidence 9999999999999885 334 4999999999999999999999998864 2 3788999999975
No 55
>PRK12608 transcription termination factor Rho; Provisional
Probab=99.94 E-value=5.4e-27 Score=222.79 Aligned_cols=131 Identities=23% Similarity=0.203 Sum_probs=118.2
Q ss_pred CCCCCCCCCEEEecCCCccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccc-cccceEeecc
Q psy17544 108 GTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEIL-VTGIKVVDLL 186 (266)
Q Consensus 108 ~t~Gl~~G~~V~~tg~~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l-~TGIraID~L 186 (266)
...+|+.|+.|..++++ ++++.+||||+|++|+|+|+.. ....+.+..|++|.+|.++++++ .+|+|+||+|
T Consensus 55 ~~~~l~~Gd~V~~~~r~---~~~~~~LgrV~~~~G~p~d~~~----~~~~~~~~~pi~p~~R~~ie~~~~~~~~RvID~l 127 (380)
T PRK12608 55 RRFNLRTGDVVEGVARP---RERYRVLVRVDSVNGTDPEKLA----RRPHFDDLTPLHPRERLRLETGSDDLSMRVVDLV 127 (380)
T ss_pred HHhCCCCCCEEEeccCC---CCChhheEEEeccCCcCchhcc----cccCcCcCCCCCccccccccccCcchhHhhhhhe
Confidence 35689999999999998 9999999999999999999873 23446778899999999999999 9999999999
Q ss_pred cccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcE-EEEEeecCCchHHHHHHHHhHh
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY-SVFAGVGERTREGNDLYHEMIE 245 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v-~V~alIGER~rEv~ef~~~l~~ 245 (266)
+|||||||++|||++|+|||||+.+++++..++++++ +++++||||++|++||++.+..
T Consensus 128 ~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~ 187 (380)
T PRK12608 128 APIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKG 187 (380)
T ss_pred eecCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhh
Confidence 9999999999999999999999999999876655555 7999999999999999999865
No 56
>KOG1353|consensus
Probab=99.90 E-value=8.1e-24 Score=190.63 Aligned_cols=190 Identities=23% Similarity=0.345 Sum_probs=165.3
Q ss_pred CCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccc
Q psy17544 48 PKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKI 127 (266)
Q Consensus 48 ~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~V 127 (266)
.....+|+|.+|-+.+.+|.+..++ ...|.++++.+ +++ ..-+++.+++.+.+|++..-++.|+.|..|+....+
T Consensus 16 a~leEtgrVLsIGdGIArV~GL~nv-QAeEmvEFssG---lKg-malnle~~~vg~v~~g~d~~ikeg~~VkrTgaIvDV 90 (340)
T KOG1353|consen 16 ADLEETGRVLSIGDGIARVYGLTNV-QAEEMVEFSSG---LKG-MALNLEGENVGVVVFGEDSLIKEGDTVKRTAAISDV 90 (340)
T ss_pred cchhhccceEEEcCceeeeeccccc-chHHHHhhhcc---ccc-hhccccCCceEEEEEcCcceeccCceEEeeeeeecc
Confidence 3466789999999999999999876 55677777653 222 244566788999999999999999999999999999
Q ss_pred cCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHH
Q psy17544 128 PVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV 207 (266)
Q Consensus 128 pvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~ 207 (266)
|+++.||||+.|++|+|+|+.+++.....+ ...|..+.||+.||++++|.+.|||+|||..|+|+..+|||.
T Consensus 91 pvg~~LlgrvvdAlGn~idgkG~i~~~~~~--------ii~r~Sv~epmqtg~KAvdslVpigRgqrELiIgdRqTGkTs 162 (340)
T KOG1353|consen 91 PPLKALLGRVGCALGEPIDGNGKISAKERR--------IIPRASVDEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTS 162 (340)
T ss_pred CchHHHhhhhhhhhcCeecCCCCccccccc--------cccceeeechhhhhhhHhhceeeeccCceEEEeccccCCcee
Confidence 999999999999999999999998876544 457889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-C------CcEEEEEeecCCchHHHHHHHHhHhcCccc
Q psy17544 208 LIMELINNVAKA-H------GGYSVFAGVGERTREGNDLYHEMIESGVIS 250 (266)
Q Consensus 208 L~~~ii~~~a~~-~------~~v~V~alIGER~rEv~ef~~~l~~~gvl~ 250 (266)
|..+.+.|+... + +-+|||+.||++...|..++..|.+.++++
T Consensus 163 la~dTI~nqk~~N~~~~ekkKiyCvyvaigqkrStvaqlv~~l~~~~a~~ 212 (340)
T KOG1353|consen 163 LAIDTILNQKRGNECLDEKKKIYCVYVAIGQKRSTVAQLVQRLEEADAME 212 (340)
T ss_pred eeehhhhhhhhhcccccccceEEEEEEecccchhHHHHHHHHHHhcCCce
Confidence 998888776421 1 138999999999999999999999999997
No 57
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=99.86 E-value=3.2e-22 Score=177.86 Aligned_cols=79 Identities=43% Similarity=0.743 Sum_probs=73.7
Q ss_pred ccceEeecccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCc
Q psy17544 178 TGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSK 257 (266)
Q Consensus 178 TGIraID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~ 257 (266)
||||+||+|+||+||||++|||++|+|||+|+++|++|+ +++ ++||++||||++|++||++++.+.++++ |
T Consensus 1 TGir~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~-~~d--~~V~~~iGer~~Ev~~~~~~~~~~~~~~------~ 71 (215)
T PF00006_consen 1 TGIRAIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQ-DAD--VVVYALIGERGREVTEFIEELKGEGALE------R 71 (215)
T ss_dssp -SHHHHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHC-TTT--EEEEEEESECHHHHHHHHHHHHHTTGGG------G
T ss_pred CCCceeccccccccCCEEEEEcCcccccchhhHHHHhcc-ccc--ceeeeeccccchhHHHHHHHHhhccccc------c
Confidence 899999999999999999999999999999999999985 343 7899999999999999999999999998 9
Q ss_pred eEEEeecc
Q psy17544 258 VNFLFNSR 265 (266)
Q Consensus 258 ~~~v~~q~ 265 (266)
+++|++++
T Consensus 72 t~vv~~t~ 79 (215)
T PF00006_consen 72 TVVVAATS 79 (215)
T ss_dssp EEEEEEET
T ss_pred cccccccc
Confidence 99999985
No 58
>PRK12678 transcription termination factor Rho; Provisional
Probab=99.84 E-value=6.4e-21 Score=188.72 Aligned_cols=131 Identities=21% Similarity=0.196 Sum_probs=98.6
Q ss_pred CCCCCCCCCEEEecCCCccccC------ChhhhhhhhcccCccccCCCC-CCCCCccccccCccccccccccc-cccccc
Q psy17544 108 GTEGLVRGQVVADSGNPIKIPV------GAETLGRIINVIGEPIDERGP-IDTDKSAAIHADAPEFVEMSVEQ-EILVTG 179 (266)
Q Consensus 108 ~t~Gl~~G~~V~~tg~~~~Vpv------G~~lLGRViD~~G~PlD~~~~-~~~~~~~pI~~~~p~~~~R~~~~-e~l~TG 179 (266)
...+|+.|+.|...-++.+=.- -..-|-||..++|.+.+.... ..+++ -.|++|.+|..++ +|+.||
T Consensus 329 rr~~Lr~Gd~v~G~vr~p~~~e~~~~r~k~~~l~~v~~vNg~~~e~~~~r~~F~~-----Ltp~~P~~R~~le~e~~~~g 403 (672)
T PRK12678 329 RKNGLRKGDAVTGAVRAPREGEQGNQRQKFNPLVRLDSVNGMSPEEAKKRPEFGK-----LTPLYPNERLRLETEPKKLT 403 (672)
T ss_pred HHcCCCCCCEEEEeecCCCCCccccccceeeeeeeEeeeCCCChHHhccCCCccc-----CCCCChHHhcccccCccccc
Confidence 3468889999886433221110 112556676677776654321 11112 2477999999998 999999
Q ss_pred ceEeecccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCc-EEEEEeecCCchHHHHHHHHh
Q psy17544 180 IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-YSVFAGVGERTREGNDLYHEM 243 (266)
Q Consensus 180 IraID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~-v~V~alIGER~rEv~ef~~~l 243 (266)
+|+||+|+|||||||.+|||++|+|||||+.+|++..++++.+ .++|++||||++||+||.+.+
T Consensus 404 iRvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeEVtdm~rsV 468 (672)
T PRK12678 404 TRVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPEEVTDMQRSV 468 (672)
T ss_pred ceeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhhHHHHHHhc
Confidence 9999999999999999999999999999999999876655555 578999999999999997665
No 59
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=99.82 E-value=2e-20 Score=178.88 Aligned_cols=132 Identities=20% Similarity=0.162 Sum_probs=105.6
Q ss_pred CCCCCCCCCEEEecCCCccccCChhhhhhhhcccCccccCCCC-CCCCCccccccCcccccccccccc--cccccceEee
Q psy17544 108 GTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERGP-IDTDKSAAIHADAPEFVEMSVEQE--ILVTGIKVVD 184 (266)
Q Consensus 108 ~t~Gl~~G~~V~~tg~~~~VpvG~~lLGRViD~~G~PlD~~~~-~~~~~~~pI~~~~p~~~~R~~~~e--~l~TGIraID 184 (266)
...+|+.||.|...-++.+=.--..-|-+|...+|.+.+.... ...++ -.|++|.+|..+++ +++||+|+||
T Consensus 87 r~~~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng~~~~~~~~r~~f~~-----l~p~~p~~R~~le~~~~~~~~~rvID 161 (416)
T PRK09376 87 RRFNLRTGDTVEGKIRPPKEGERYFALLKVETVNGEDPEKARNRPLFEN-----LTPLYPNERLRLETGNPEDLSTRIID 161 (416)
T ss_pred HhcCCCCCCEEEEEeeCCCCCCCccceEEEeeeCCCCHHHhcCCCCccc-----CCCCChhhcccccCCCCcccceeeee
Confidence 3568999999998766543222233567888888888875431 12222 24789999999998 8999999999
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCc-EEEEEeecCCchHHHHHHHHhH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-YSVFAGVGERTREGNDLYHEMI 244 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~-v~V~alIGER~rEv~ef~~~l~ 244 (266)
+|+|||||||.+||||+|+|||||+.+++++....|.+ .+++++||||++|+.||++++.
T Consensus 162 ~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIl 222 (416)
T PRK09376 162 LIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVK 222 (416)
T ss_pred eecccccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhc
Confidence 99999999999999999999999999999876554444 5688999999999999999996
No 60
>COG1158 Rho Transcription termination factor [Transcription]
Probab=99.55 E-value=7.7e-15 Score=137.28 Aligned_cols=133 Identities=21% Similarity=0.222 Sum_probs=98.6
Q ss_pred CCCCCCCCEEEecCCCccccCChhhhhhhhcccCccccCC-CCCCCCCccccccCccccccccccc-----ccccccceE
Q psy17544 109 TEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDER-GPIDTDKSAAIHADAPEFVEMSVEQ-----EILVTGIKV 182 (266)
Q Consensus 109 t~Gl~~G~~V~~tg~~~~VpvG~~lLGRViD~~G~PlD~~-~~~~~~~~~pI~~~~p~~~~R~~~~-----e~l~TGIra 182 (266)
..+|+.||.|...-++.+=.--..-|=||--.+|+|.+.. ..+..+...|+ .|.+|...+ ..+.| |+
T Consensus 91 rf~LrtGD~v~G~vR~Pke~Ery~aLl~ve~vN~~~pe~~~~R~~F~~LTPl-----yP~erl~LE~~~~~~~ls~--Rv 163 (422)
T COG1158 91 RFNLRTGDTVEGKVRPPKEGERYFALLKVEAVNGDDPEKAKNRVLFENLTPL-----YPNERLKLERENGSTDLST--RV 163 (422)
T ss_pred hccCccCCEEeeeecCCCcccceeeeEEEeecCCCCHHHhhccCCcccCCCC-----CCcceeeeecCCCcccchh--HH
Confidence 4578999999877655554433445567777778777642 12233344544 344544332 32322 99
Q ss_pred eecccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCc-EEEEEeecCCchHHHHHHHHhHhcCcc
Q psy17544 183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-YSVFAGVGERTREGNDLYHEMIESGVI 249 (266)
Q Consensus 183 ID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~-v~V~alIGER~rEv~ef~~~l~~~gvl 249 (266)
||++.|||||||.+|++|+.+|||+|+++|++..+.+|++ +.++.||+||++||+|+.+..+ ..|+
T Consensus 164 iDL~~PIGkGQR~LIVAPPkaGKT~lLq~IA~aIt~N~Pe~~LiVLLIDERPEEVTdmqrsV~-geVi 230 (422)
T COG1158 164 IDLISPIGKGQRGLIVAPPKAGKTTLLQNIANAITTNHPECELIVLLIDERPEEVTDMQRSVK-GEVV 230 (422)
T ss_pred HhhhcccCCCceeeEecCCCCCchHHHHHHHHHHhcCCCceEEEEEEecCCchHHHHHHHhhc-ceEE
Confidence 9999999999999999999999999999999999999988 6777889999999999998886 4554
No 61
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=99.54 E-value=1.7e-14 Score=138.73 Aligned_cols=132 Identities=18% Similarity=0.173 Sum_probs=88.0
Q ss_pred CCCCCCCCCEEEecCCCccccCChhhhhhhhcccCccccC-CCCCCCCCccccccCcccccccccc-cccccccceEeec
Q psy17544 108 GTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDE-RGPIDTDKSAAIHADAPEFVEMSVE-QEILVTGIKVVDL 185 (266)
Q Consensus 108 ~t~Gl~~G~~V~~tg~~~~VpvG~~lLGRViD~~G~PlD~-~~~~~~~~~~pI~~~~p~~~~R~~~-~e~l~TGIraID~ 185 (266)
...+|+.||.|...-++..-.---.-|=++-...|.+.+. .+.+..++..|+ .|.+|..+ ..+-..|+|+||+
T Consensus 87 ~~~~lr~gd~v~g~~R~~~~~ER~~~Ll~v~~vn~~~~e~~~~ri~Fe~LTf~-----YP~er~~Le~~~~~~~~R~id~ 161 (415)
T TIGR00767 87 RRFNLRTGDTIEGQIRSPKEGERYFALLKVESVNGDDPEKAKNRVLFENLTPL-----YPNERLRLETSTEDLSTRVLDL 161 (415)
T ss_pred HhcCCCCCCEEEEEEeccccHhHHHHHhCCCccCCCCccccCCCeEEEEeeec-----CCCccceeecCccccceeeeee
Confidence 3568999999998654432110001111222223333221 112222223333 34455433 3566789999999
Q ss_pred ccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCc-EEEEEeecCCchHHHHHHHHhH
Q psy17544 186 LAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-YSVFAGVGERTREGNDLYHEMI 244 (266)
Q Consensus 186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~-v~V~alIGER~rEv~ef~~~l~ 244 (266)
++|||+|||++|+|++|+|||||+.++.++...+|.+ .++++++|||++|+.||++.+.
T Consensus 162 ~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIl 221 (415)
T TIGR00767 162 FAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVK 221 (415)
T ss_pred EEEeCCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhh
Confidence 9999999999999999999999999998876544333 6789999999999999999984
No 62
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.47 E-value=8.4e-14 Score=126.47 Aligned_cols=64 Identities=31% Similarity=0.477 Sum_probs=55.8
Q ss_pred ceEeecccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCc-EEEEEeecCCchHHHHHHHHh
Q psy17544 180 IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-YSVFAGVGERTREGNDLYHEM 243 (266)
Q Consensus 180 IraID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~-v~V~alIGER~rEv~ef~~~l 243 (266)
.|+||+|+||++|||++|||++|+|||||+.+++++....+.+ +++++++|||++|+.||++++
T Consensus 4 ~~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I 68 (249)
T cd01128 4 TRVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV 68 (249)
T ss_pred hhheeeecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHh
Confidence 4999999999999999999999999999999998865333334 456777999999999999998
No 63
>PF02874 ATP-synt_ab_N: ATP synthase alpha/beta family, beta-barrel domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR004100 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the N-terminal domain, which forms a closed beta-barrel with Greek-key topology. ; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015992 proton transport, 0046034 ATP metabolic process, 0016469 proton-transporting two-sector ATPase complex; PDB: 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B 1E79_B 1E1R_C 2XND_C ....
Probab=98.80 E-value=1.4e-08 Score=74.08 Aligned_cols=66 Identities=39% Similarity=0.497 Sum_probs=55.9
Q ss_pred EEEEECcEEEEEec-CCCcccccEEEEecC--CCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecC
Q psy17544 56 VVAVIGAVVDVQFD-HDLPPILNALEVEGR--SPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSG 122 (266)
Q Consensus 56 V~~I~G~vV~v~~~-~~~p~ig~~~~v~~~--~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg 122 (266)
|++|.|+++++++. ..+|+++|.++++.. +..+.+||+++ +++.+++++|++++||++|++|++||
T Consensus 1 V~~v~G~vv~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~Vv~~-~~~~v~~~~~~~t~Gl~~G~~V~~tG 69 (69)
T PF02874_consen 1 VTQVVGPVVEVEFGPGVLPGIGEAVEVELVDFGNGVLGEVVGL-DEDEVRLQVFGSTDGLSRGTEVRFTG 69 (69)
T ss_dssp EEEEECTEEEEECSEEEEEETTTEEEEEEEEETTEEEEEEEEE-ETTEEEEEESSSGTTSBTTCEEEEEE
T ss_pred CccccceEEEEEcCCCCCCCccEEEEEecccceeeeeeeeccc-CccEEEEEEecCCCCCCCCCEEEcCc
Confidence 68999999999765 446789999988732 35678898885 67899999999999999999999986
No 64
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.71 E-value=2.9e-05 Score=68.33 Aligned_cols=66 Identities=27% Similarity=0.337 Sum_probs=50.1
Q ss_pred ccccceEeeccc--ccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHH
Q psy17544 176 LVTGIKVVDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYH 241 (266)
Q Consensus 176 l~TGIraID~L~--pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~ 241 (266)
..|||..+|-++ -+-+|.-+.|.|++|+|||+|+.+++.+.+++.+.-++|...-|..+++.+-.+
T Consensus 1 V~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~ 68 (226)
T PF06745_consen 1 VPTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMK 68 (226)
T ss_dssp E--SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHH
T ss_pred CCCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHH
Confidence 369999999999 688999999999999999999999887765542568889988777765555433
No 65
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.65 E-value=9.2e-05 Score=66.22 Aligned_cols=65 Identities=20% Similarity=0.288 Sum_probs=53.6
Q ss_pred cccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHH
Q psy17544 175 ILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLY 240 (266)
Q Consensus 175 ~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~ 240 (266)
.+.|||..+|-++. +-+|.-+.|.|++|+|||+|+.+++.+.++ .+..++|...-|..+++.+..
T Consensus 2 ri~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~-~ge~~lyvs~ee~~~~i~~~~ 68 (237)
T TIGR03877 2 RVKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ-MGEPGIYVALEEHPVQVRRNM 68 (237)
T ss_pred ccccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcEEEEEeeCCHHHHHHHH
Confidence 36899999999875 779999999999999999999998876543 456899999888777655543
No 66
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.65 E-value=0.0001 Score=66.64 Aligned_cols=68 Identities=22% Similarity=0.339 Sum_probs=60.5
Q ss_pred ccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHH
Q psy17544 174 EILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHE 242 (266)
Q Consensus 174 e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~ 242 (266)
+.+.|||.-+|-++- +-+|.-+.|.|++|+|||+++.+.+.+.++ ++.-++|...-|...|+.+-...
T Consensus 3 ~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~-~ge~vlyvs~~e~~~~l~~~~~~ 72 (260)
T COG0467 3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAR-EGEPVLYVSTEESPEELLENARS 72 (260)
T ss_pred ccccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHh-cCCcEEEEEecCCHHHHHHHHHH
Confidence 457899999999999 789999999999999999999999998754 46789999999999998887763
No 67
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.65 E-value=7.7e-05 Score=65.23 Aligned_cols=51 Identities=29% Similarity=0.417 Sum_probs=42.1
Q ss_pred ccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEE
Q psy17544 176 LVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 227 (266)
Q Consensus 176 l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~a 227 (266)
+.||+..+|-++. +-+|.=+.|+|++|+|||+|+.+++.+.++. +.-++|.
T Consensus 1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~-g~~v~yi 53 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ-GKKVAYI 53 (218)
T ss_pred CCcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEE
Confidence 4799999999996 7789999999999999999999999876543 3444454
No 68
>PRK04328 hypothetical protein; Provisional
Probab=97.54 E-value=0.00017 Score=65.19 Aligned_cols=64 Identities=22% Similarity=0.284 Sum_probs=53.7
Q ss_pred cccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHH
Q psy17544 175 ILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL 239 (266)
Q Consensus 175 ~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef 239 (266)
.+.|||.-+|-++. +-+|.-+.|.|++|+|||+|+.+++.+.++ .+..++|...-|..+++.+.
T Consensus 4 rv~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~-~ge~~lyis~ee~~~~i~~~ 69 (249)
T PRK04328 4 RVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ-MGEPGVYVALEEHPVQVRRN 69 (249)
T ss_pred eecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHh-cCCcEEEEEeeCCHHHHHHH
Confidence 47899999999986 559999999999999999999998876543 35689999999988875554
No 69
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.51 E-value=0.00016 Score=63.69 Aligned_cols=41 Identities=39% Similarity=0.491 Sum_probs=37.4
Q ss_pred ccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 176 LVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 176 l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
+.||++.+|-++. +-+|.-+.|.|++|+|||+|+.+++.+.
T Consensus 1 ~~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~ 43 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred CCCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHe
Confidence 4799999999987 8899999999999999999999998753
No 70
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.46 E-value=0.00026 Score=62.29 Aligned_cols=60 Identities=22% Similarity=0.352 Sum_probs=47.3
Q ss_pred ccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHH
Q psy17544 176 LVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREG 236 (266)
Q Consensus 176 l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv 236 (266)
+.|||..+|-++. +-+|.-+.|.|++|+|||+|+.+++.+.++ .+.-++|....+..+++
T Consensus 2 i~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~-~g~~~~~is~e~~~~~i 63 (229)
T TIGR03881 2 LSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLR-DGDPVIYVTTEESRESI 63 (229)
T ss_pred cCCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHh-cCCeEEEEEccCCHHHH
Confidence 5799999999985 669999999999999999999998876543 34466777665555443
No 71
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.45 E-value=0.00023 Score=70.46 Aligned_cols=66 Identities=20% Similarity=0.173 Sum_probs=54.2
Q ss_pred cccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHH
Q psy17544 175 ILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLY 240 (266)
Q Consensus 175 ~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~ 240 (266)
.+.|||.-+|-++. +-+|.-+.|-|++|+|||+|+.+++.+.++..+.-++|...-|+.++..+-.
T Consensus 2 r~~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~ 69 (484)
T TIGR02655 2 KIRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNA 69 (484)
T ss_pred cCCCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHH
Confidence 47899999999986 7799999999999999999999988765544356788888888776654433
No 72
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.40 E-value=0.00033 Score=62.17 Aligned_cols=71 Identities=21% Similarity=0.232 Sum_probs=56.5
Q ss_pred cccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcC
Q psy17544 173 QEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESG 247 (266)
Q Consensus 173 ~e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~g 247 (266)
.+.+.|||..+|-++. +-+|.-+.|.|++|+|||+|+.+++.+.++ ++..++|...-|.. .++++.+.+.|
T Consensus 4 ~~~~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~e~~~---~~~~~~~~~~g 76 (234)
T PRK06067 4 KEIISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITTENTS---KSYLKQMESVK 76 (234)
T ss_pred ceEEecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEcCCCH---HHHHHHHHHCC
Confidence 3568999999999985 779999999999999999999999876544 45678888776554 45666666666
No 73
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.38 E-value=0.00056 Score=61.64 Aligned_cols=69 Identities=25% Similarity=0.224 Sum_probs=52.8
Q ss_pred cccccccceEeecccc-cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHH
Q psy17544 173 QEILVTGIKVVDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYH 241 (266)
Q Consensus 173 ~e~l~TGIraID~L~p-igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~ 241 (266)
++-+.||+..+|-++- +.+|.-+.|.|++|+|||+|+.+++.+.+..++..++|.-.=+...+..+.+.
T Consensus 10 ~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~ 79 (271)
T cd01122 10 NEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLL 79 (271)
T ss_pred ccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHH
Confidence 4567799999999753 77999999999999999999999998766553445666666566666655543
No 74
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.38 E-value=0.00032 Score=61.73 Aligned_cols=56 Identities=30% Similarity=0.500 Sum_probs=46.2
Q ss_pred cccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEee
Q psy17544 173 QEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 229 (266)
Q Consensus 173 ~e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alI 229 (266)
++.+.||+..+|-++. +-+|.=+.|.|++|+|||+|+.+++.+.++. +..++|.-.
T Consensus 2 ~~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~-~~~v~yi~~ 59 (225)
T PRK09361 2 DERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKN-GKKVIYIDT 59 (225)
T ss_pred CccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEC
Confidence 5678999999999994 6789999999999999999999999877544 345566544
No 75
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.35 E-value=0.00046 Score=60.36 Aligned_cols=42 Identities=33% Similarity=0.461 Sum_probs=38.1
Q ss_pred ccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544 176 LVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVA 217 (266)
Q Consensus 176 l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a 217 (266)
+.||+..+|-++. +-+|+-..|+|++|+|||+|+.+++.+.+
T Consensus 1 i~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~ 44 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQ 44 (226)
T ss_pred CCCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhh
Confidence 5799999999985 88999999999999999999999998754
No 76
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.31 E-value=0.00036 Score=69.20 Aligned_cols=70 Identities=27% Similarity=0.290 Sum_probs=58.6
Q ss_pred ccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHh
Q psy17544 174 EILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEM 243 (266)
Q Consensus 174 e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l 243 (266)
+.+.|||..+|-++- +-+|+-+.|.|++|+|||+|+.+++.+.+..++.-++|...-|..+++.+-...|
T Consensus 11 ~ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~ 82 (509)
T PRK09302 11 EKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASF 82 (509)
T ss_pred ccccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHc
Confidence 467899999999984 8899999999999999999999999876655466889999999887766655544
No 77
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.25 E-value=0.00069 Score=61.69 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=45.4
Q ss_pred ccccceEeeccc----------------ccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCc
Q psy17544 176 LVTGIKVVDLLA----------------PYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 233 (266)
Q Consensus 176 l~TGIraID~L~----------------pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~ 233 (266)
+.|||..+|-++ -+-+|.-+.|.|++|+|||+|+.+++.+.++. +.-++|...-|..
T Consensus 4 ~~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~-Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 4 VPTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQASR-GNPVLFVTVESPA 76 (259)
T ss_pred ccCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecCCc
Confidence 479999999997 35699999999999999999999998876553 4566666654444
No 78
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.03 E-value=0.0012 Score=65.48 Aligned_cols=72 Identities=21% Similarity=0.355 Sum_probs=55.6
Q ss_pred ccccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcC
Q psy17544 172 EQEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESG 247 (266)
Q Consensus 172 ~~e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~g 247 (266)
..+.+.|||..+|-++. +-+|.-+.|.|++|+|||+|+.+++.+.++ .+.-++|...-|..++ +++.+...|
T Consensus 251 ~~~~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~-~g~~~~yis~e~~~~~---i~~~~~~~g 324 (509)
T PRK09302 251 SNERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACR-RGERCLLFAFEESRAQ---LIRNARSWG 324 (509)
T ss_pred ccccccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHh-CCCcEEEEEecCCHHH---HHHHHHHcC
Confidence 46778999999999986 889999999999999999999999987544 3456777766666554 444444434
No 79
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.01 E-value=0.00057 Score=52.60 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=23.5
Q ss_pred cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
+++.+.|+|++|+|||+++..+++..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhcc
Confidence 47899999999999999999998864
No 80
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.96 E-value=0.00076 Score=63.81 Aligned_cols=53 Identities=34% Similarity=0.528 Sum_probs=43.7
Q ss_pred ccccccceEeecccc---cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEE
Q psy17544 174 EILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 227 (266)
Q Consensus 174 e~l~TGIraID~L~p---igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~a 227 (266)
+.+.||+..+|.++. +-+|.=+.|+|++|+|||+|+.+++.+.++. +..++|.
T Consensus 34 ~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~-g~~v~yI 89 (321)
T TIGR02012 34 ETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKA-GGTAAFI 89 (321)
T ss_pred ceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEE
Confidence 468899999999997 6699999999999999999999988876543 4455544
No 81
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.90 E-value=0.0008 Score=63.76 Aligned_cols=55 Identities=33% Similarity=0.526 Sum_probs=44.7
Q ss_pred cccccccceEeecccc---cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEe
Q psy17544 173 QEILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 228 (266)
Q Consensus 173 ~e~l~TGIraID~L~p---igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~al 228 (266)
.+.+.||+..+|.++. +-+|-=+-|+|++|+|||+|+.+++.+.++. +..++|.-
T Consensus 33 ~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~-g~~~vyId 90 (325)
T cd00983 33 VEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKL-GGTVAFID 90 (325)
T ss_pred CceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEEC
Confidence 4578999999999998 6678888999999999999999998875543 34555553
No 82
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.88 E-value=0.0051 Score=49.51 Aligned_cols=54 Identities=31% Similarity=0.466 Sum_probs=40.9
Q ss_pred eeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCcc
Q psy17544 195 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVI 249 (266)
Q Consensus 195 ~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl 249 (266)
+.|+|++|+|||+|+..++...+ .++..++|....+...+..+.+..+...+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~-~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~ 55 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA-TKGGKVVYVDIEEEIEELTERLIGESLKGAL 55 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH-hcCCEEEEEECCcchHHHHHHHhhhhhcccc
Confidence 57999999999999999998654 3456788888888888877766555544433
No 83
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.88 E-value=0.0013 Score=61.01 Aligned_cols=69 Identities=26% Similarity=0.305 Sum_probs=51.4
Q ss_pred cccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhc-----CCcEEEEEeecC--CchHHHHHHH
Q psy17544 173 QEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGYSVFAGVGE--RTREGNDLYH 241 (266)
Q Consensus 173 ~e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~-----~~~v~V~alIGE--R~rEv~ef~~ 241 (266)
...+.||++.+|.++- +-+|.-+.|+|++|+|||+|+.+++.+.+.. .++.+||.-.-+ +.+...++.+
T Consensus 74 ~~~~~Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~ 151 (310)
T TIGR02236 74 IGKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAE 151 (310)
T ss_pred CCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHH
Confidence 3447799999999987 7789999999999999999999998874321 123688888777 3444444443
No 84
>PRK09354 recA recombinase A; Provisional
Probab=96.87 E-value=0.00092 Score=63.92 Aligned_cols=56 Identities=27% Similarity=0.489 Sum_probs=45.0
Q ss_pred cccccccceEeecccc---cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEee
Q psy17544 173 QEILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 229 (266)
Q Consensus 173 ~e~l~TGIraID~L~p---igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alI 229 (266)
.+.+.||+..+|.++. +-+|.=+-|+|++|+|||+|+.+++.+.++ .+..++|.-.
T Consensus 38 ~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~-~G~~~~yId~ 96 (349)
T PRK09354 38 VEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK-AGGTAAFIDA 96 (349)
T ss_pred CceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEECC
Confidence 4578899999999998 557888889999999999999999887544 3455655543
No 85
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.83 E-value=0.0024 Score=63.30 Aligned_cols=67 Identities=18% Similarity=0.258 Sum_probs=55.6
Q ss_pred cccccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHH
Q psy17544 171 VEQEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGND 238 (266)
Q Consensus 171 ~~~e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~e 238 (266)
...+.+.|||..+|-++- +-+|.-+.|.|++|+|||+|+.+.+.+.++ ++..++|..-=|..++...
T Consensus 240 ~~~~~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~-~ge~~~y~s~eEs~~~i~~ 308 (484)
T TIGR02655 240 SSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA-NKERAILFAYEESRAQLLR 308 (484)
T ss_pred ccccccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEEeeCCHHHHHH
Confidence 356779999999999985 789999999999999999999999987654 4568888887777655444
No 86
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.81 E-value=0.004 Score=55.76 Aligned_cols=63 Identities=16% Similarity=0.097 Sum_probs=44.9
Q ss_pred ccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHH
Q psy17544 176 LVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL 239 (266)
Q Consensus 176 l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef 239 (266)
+.+++.-+|-++. +-+|..++|.|++|+|||+|+.+++.+.++ ++..++|...-|...+..+.
T Consensus 6 ~~~~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~-~g~~~~yi~~e~~~~~~~~~ 70 (230)
T PRK08533 6 IELSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQ-NGYSVSYVSTQLTTTEFIKQ 70 (230)
T ss_pred EEEEEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh-CCCcEEEEeCCCCHHHHHHH
Confidence 3456666666665 668999999999999999998777776543 33467777766665544333
No 87
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.76 E-value=0.001 Score=60.73 Aligned_cols=30 Identities=27% Similarity=0.493 Sum_probs=26.5
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=+.|.+|++.||+|+||+|||||+..++-
T Consensus 26 VS~~i~~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 26 VSLEIERGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred eeEEecCCCEEEEEcCCCCCHHHHHHHHhc
Confidence 347899999999999999999999987664
No 88
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.75 E-value=0.0025 Score=60.83 Aligned_cols=72 Identities=18% Similarity=0.121 Sum_probs=53.4
Q ss_pred cccccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhc--C---CcEEEEEeecC--CchHHHHHHH
Q psy17544 171 VEQEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKA--H---GGYSVFAGVGE--RTREGNDLYH 241 (266)
Q Consensus 171 ~~~e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~--~---~~v~V~alIGE--R~rEv~ef~~ 241 (266)
.-...+.||++.+|-++- +-.|.=.-|+|++|+|||+|+++++-+.+.. . +..++|.-.-+ +.+.+.+..+
T Consensus 103 ~~~~~isTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~ 182 (344)
T PLN03187 103 KSVVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAE 182 (344)
T ss_pred ccCceecCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHH
Confidence 345679999999999987 6689999999999999999999998654321 1 13677777655 4555555544
Q ss_pred H
Q psy17544 242 E 242 (266)
Q Consensus 242 ~ 242 (266)
.
T Consensus 183 ~ 183 (344)
T PLN03187 183 R 183 (344)
T ss_pred H
Confidence 3
No 89
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.70 E-value=0.0038 Score=54.88 Aligned_cols=60 Identities=23% Similarity=0.376 Sum_probs=45.8
Q ss_pred cceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHH
Q psy17544 179 GIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL 239 (266)
Q Consensus 179 GIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef 239 (266)
||..+|-++. +-+|.-+.|.|++|+|||+++.+++.+.++. +.-++|.-.-|..+++.+-
T Consensus 1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~~~~~l~~~ 62 (224)
T TIGR03880 1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEEREERILGY 62 (224)
T ss_pred CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCHHHHHHH
Confidence 5677788764 5589999999999999999999999875443 4577787777765544443
No 90
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.70 E-value=0.0029 Score=60.91 Aligned_cols=58 Identities=31% Similarity=0.549 Sum_probs=46.1
Q ss_pred cccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCC
Q psy17544 173 QEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGER 232 (266)
Q Consensus 173 ~e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER 232 (266)
.+.+.|||.-+|-++. +.+|+=+.|.|++|+|||+|+.+++.+.++. +..++|. .||.
T Consensus 61 ~~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~-g~~VlYv-s~EE 120 (372)
T cd01121 61 EERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR-GGKVLYV-SGEE 120 (372)
T ss_pred cCccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEE-ECCc
Confidence 3468899999999985 8899999999999999999999999876543 2344444 3453
No 91
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.61 E-value=0.0028 Score=62.46 Aligned_cols=70 Identities=21% Similarity=0.347 Sum_probs=51.3
Q ss_pred ccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcC
Q psy17544 174 EILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESG 247 (266)
Q Consensus 174 e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~g 247 (266)
+.+.||+.-+|-++. +.+|+-+.|.|++|+|||||+.+++.+.++. +.-++|. .||-.. .++.......|
T Consensus 74 ~ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~-g~kvlYv-s~EEs~--~qi~~ra~rlg 145 (454)
T TIGR00416 74 PRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKN-QMKVLYV-SGEESL--QQIKMRAIRLG 145 (454)
T ss_pred CccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEE-ECcCCH--HHHHHHHHHcC
Confidence 458899999999985 8899999999999999999999998876543 2345565 455332 23433444444
No 92
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.56 E-value=0.0025 Score=55.11 Aligned_cols=35 Identities=29% Similarity=0.385 Sum_probs=29.4
Q ss_pred eEeecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 181 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 181 raID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.+++-.+.+.+|..++|.|++|+|||||+..|+..
T Consensus 14 ~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 14 FLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred EEEccCcEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 34554579999999999999999999999877653
No 93
>PTZ00035 Rad51 protein; Provisional
Probab=96.55 E-value=0.0037 Score=59.38 Aligned_cols=49 Identities=29% Similarity=0.268 Sum_probs=41.5
Q ss_pred ccccccccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 168 EMSVEQEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 168 ~R~~~~e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
++..-...+.||++.+|-++- +-+|.-..|+|++|+|||+|+++++.+.
T Consensus 92 ~~~~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 92 EARKNIIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred HhhccCccccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 333445679999999999985 7789999999999999999999998654
No 94
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.54 E-value=0.0019 Score=51.83 Aligned_cols=29 Identities=34% Similarity=0.462 Sum_probs=25.4
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELI 213 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii 213 (266)
..+.+..|+.++|.|+||+|||||+..+.
T Consensus 8 vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 8 VLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred eEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 34578889999999999999999998775
No 95
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.49 E-value=0.0042 Score=58.45 Aligned_cols=73 Identities=16% Similarity=0.126 Sum_probs=52.1
Q ss_pred cccccccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhc-----CCcEEEEEeecC--CchHHHHH
Q psy17544 169 MSVEQEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGYSVFAGVGE--RTREGNDL 239 (266)
Q Consensus 169 R~~~~e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~-----~~~v~V~alIGE--R~rEv~ef 239 (266)
+..-...+.||++.+|-++- +-+|.=.-|+|++|+|||+|+++++.+.+.. .+..++|.-.-+ +.+.+.+.
T Consensus 71 ~~~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~ 150 (313)
T TIGR02238 71 KRKKVLKITTGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAI 150 (313)
T ss_pred hhccCceeCCCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHH
Confidence 33334678999999999986 7799999999999999999999988653311 123667766544 24444444
Q ss_pred HH
Q psy17544 240 YH 241 (266)
Q Consensus 240 ~~ 241 (266)
.+
T Consensus 151 a~ 152 (313)
T TIGR02238 151 AE 152 (313)
T ss_pred HH
Confidence 33
No 96
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.48 E-value=0.0022 Score=58.61 Aligned_cols=34 Identities=26% Similarity=0.535 Sum_probs=28.6
Q ss_pred ceEe-ecccccccCceeeeecCCCccHHHHHHHHH
Q psy17544 180 IKVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELI 213 (266)
Q Consensus 180 IraI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii 213 (266)
..++ |.=+.+.+|+-+.|.|+||||||||+..++
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiA 50 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIA 50 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 4555 455789999999999999999999997554
No 97
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.48 E-value=0.0022 Score=54.91 Aligned_cols=29 Identities=28% Similarity=0.521 Sum_probs=26.1
Q ss_pred ccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 186 LAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
=+++.+|+.++|.|++|+|||||+..|+.
T Consensus 12 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 12 NFAAERGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 36789999999999999999999987765
No 98
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.47 E-value=0.0046 Score=60.82 Aligned_cols=71 Identities=24% Similarity=0.439 Sum_probs=51.1
Q ss_pred ccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCc
Q psy17544 174 EILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGV 248 (266)
Q Consensus 174 e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gv 248 (266)
+.+.||+.-+|-++. +.+|+-+.|.|++|+|||+|+.+++.+.++. +..++|.- +|-.. .++.+...+.|.
T Consensus 60 ~ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs-~Ees~--~qi~~ra~rlg~ 132 (446)
T PRK11823 60 PRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVS-GEESA--SQIKLRAERLGL 132 (446)
T ss_pred CcccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEE-ccccH--HHHHHHHHHcCC
Confidence 358899999999985 7899999999999999999999999876533 33455554 44322 234444444443
No 99
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.44 E-value=0.0024 Score=55.85 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=27.5
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 23 ~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 23 GVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34477899999999999999999999887653
No 100
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.42 E-value=0.0026 Score=54.18 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=26.3
Q ss_pred ccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 186 LAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
=+++.+|+.++|.|++|+|||||+..|+.
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 20 SLNIEAGEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 37788999999999999999999987765
No 101
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.41 E-value=0.0025 Score=55.98 Aligned_cols=32 Identities=31% Similarity=0.466 Sum_probs=27.8
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+++.+||.++|+|++|+|||||+..|+..
T Consensus 21 ~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 21 DINFSIKPGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34478999999999999999999999988753
No 102
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.39 E-value=0.0027 Score=55.79 Aligned_cols=32 Identities=31% Similarity=0.415 Sum_probs=27.5
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 18 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 18 DISLDIPKGEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 33468899999999999999999999877653
No 103
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.36 E-value=0.0028 Score=55.00 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=26.9
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 19 ~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G 49 (211)
T cd03225 19 DISLTIKKGEFVLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3346788999999999999999999987765
No 104
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.35 E-value=0.0029 Score=54.93 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=27.5
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+++-+|+.++|.|++|+|||||+..|+..
T Consensus 19 ~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 19 GINISISAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34477889999999999999999999877653
No 105
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.34 E-value=0.003 Score=54.85 Aligned_cols=31 Identities=35% Similarity=0.556 Sum_probs=27.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 18 ~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (210)
T cd03269 18 DISFSVEKGEIFGLLGPNGAGKTTTIRMILG 48 (210)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3446789999999999999999999987765
No 106
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.34 E-value=0.0039 Score=59.73 Aligned_cols=44 Identities=25% Similarity=0.345 Sum_probs=35.6
Q ss_pred ccccccccccceEee-cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 170 SVEQEILVTGIKVVD-LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 170 ~~~~e~l~TGIraID-~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
..++.-+. +..++| .=+.|.+|.-+.+.||||||||||+.+|+-
T Consensus 9 ~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 9 RNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred EeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34555555 567775 678999999999999999999999987764
No 107
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.33 E-value=0.0031 Score=54.62 Aligned_cols=32 Identities=28% Similarity=0.521 Sum_probs=27.9
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+++-+|+.++|.|++|+|||||+..|+..
T Consensus 23 ~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 23 DINLEVPKGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 44478899999999999999999999887764
No 108
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.33 E-value=0.003 Score=55.04 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=26.9
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 23 ~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 23 VSLSIEKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred eEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3367889999999999999999999877653
No 109
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.32 E-value=0.0031 Score=55.93 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=27.0
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 20 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 50 (243)
T TIGR02315 20 NINLNINPGEFVAIIGPSGAGKSTLLRCINR 50 (243)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3347789999999999999999999987765
No 110
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.32 E-value=0.0048 Score=57.01 Aligned_cols=48 Identities=29% Similarity=0.546 Sum_probs=38.8
Q ss_pred ceEee-cccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEe
Q psy17544 180 IKVVD-LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 228 (266)
Q Consensus 180 IraID-~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~al 228 (266)
++|+| .=+.+-+|..+||+|.||+|||||...+++ .-+...+-+.|-+
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~-L~~pt~G~i~f~g 74 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILG-LEEPTSGEILFEG 74 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHc-CcCCCCceEEEcC
Confidence 57776 668999999999999999999999998877 3344445667764
No 111
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.31 E-value=0.0032 Score=54.63 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=27.3
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+-.
T Consensus 18 ~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 18 GIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33467889999999999999999999877653
No 112
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.31 E-value=0.0061 Score=56.91 Aligned_cols=58 Identities=26% Similarity=0.307 Sum_probs=46.1
Q ss_pred ccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhc-----CCcEEEEEeecC
Q psy17544 174 EILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGYSVFAGVGE 231 (266)
Q Consensus 174 e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~-----~~~v~V~alIGE 231 (266)
..+.||+..+|-++. +-+|.-+.|+|++|+|||+|+.+++.+.+.. .+..++|.-.-+
T Consensus 82 ~~~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 82 GKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 457899999999876 7789999999999999999999999764321 123677777665
No 113
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.31 E-value=0.0032 Score=55.28 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=26.7
Q ss_pred ccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 186 LAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
-+.+-+|.++.|.||||+|||||+.+++.=
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHhc
Confidence 356889999999999999999999988763
No 114
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.30 E-value=0.0032 Score=55.10 Aligned_cols=31 Identities=32% Similarity=0.450 Sum_probs=27.4
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4557889999999999999999999987764
No 115
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.30 E-value=0.0031 Score=55.09 Aligned_cols=31 Identities=26% Similarity=0.514 Sum_probs=26.8
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 18 GVSLTVPEGEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred eeeEEEcCCeEEEEECCCCCCHHHHHHHHhC
Confidence 3346889999999999999999999987765
No 116
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.29 E-value=0.0033 Score=54.85 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=27.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 21 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (216)
T TIGR00960 21 NLNFHITKGEMVFLVGHSGAGKSTFLKLILG 51 (216)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3447789999999999999999999987765
No 117
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.29 E-value=0.0032 Score=54.35 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=26.9
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 16 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 46 (206)
T TIGR03608 16 DLNLTIEKGKMYAIIGESGSGKSTLLNIIGL 46 (206)
T ss_pred ceEEEEeCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4446788999999999999999999987765
No 118
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.29 E-value=0.0032 Score=55.51 Aligned_cols=30 Identities=30% Similarity=0.445 Sum_probs=26.9
Q ss_pred ccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 186 LAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
=+++.+|+.++|.|++|+|||||+..|+..
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 25 SLSVPKGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 377899999999999999999999987653
No 119
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=96.29 E-value=0.0053 Score=55.33 Aligned_cols=58 Identities=28% Similarity=0.322 Sum_probs=42.3
Q ss_pred ccccceEeeccc-ccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCch
Q psy17544 176 LVTGIKVVDLLA-PYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTR 234 (266)
Q Consensus 176 l~TGIraID~L~-pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~r 234 (266)
+.||++.+|-++ -+.+|+=.-|-|.+|+|||+++.+++.+.+..++ ..|+-..-|=..
T Consensus 2 i~TG~~~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~-~~vly~SlEm~~ 60 (259)
T PF03796_consen 2 IPTGFPALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNGG-YPVLYFSLEMSE 60 (259)
T ss_dssp B-SSTHHHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTS-SEEEEEESSS-H
T ss_pred CCCChHHHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhcC-CeEEEEcCCCCH
Confidence 579999999886 5788889999999999999999999998776533 444444444333
No 120
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.27 E-value=0.0031 Score=55.67 Aligned_cols=29 Identities=31% Similarity=0.368 Sum_probs=26.3
Q ss_pred ccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 186 LAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
=+++.+|+.++|.|++|+|||||+..|+.
T Consensus 20 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (236)
T cd03219 20 SFSVRPGEIHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHcC
Confidence 46789999999999999999999997765
No 121
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.26 E-value=0.0034 Score=55.30 Aligned_cols=31 Identities=32% Similarity=0.491 Sum_probs=27.5
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (230)
T TIGR03410 18 GVSLEVPKGEVTCVLGRNGVGKTTLLKTLMG 48 (230)
T ss_pred ceeeEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4557899999999999999999999987765
No 122
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.26 E-value=0.0035 Score=55.43 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=27.2
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 20 VSLSINPGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468899999999999999999999988753
No 123
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.23 E-value=0.0036 Score=54.74 Aligned_cols=32 Identities=31% Similarity=0.546 Sum_probs=27.4
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 23 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 23 DVSFSIKKGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CceeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33467889999999999999999999877653
No 124
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.23 E-value=0.0037 Score=54.15 Aligned_cols=30 Identities=37% Similarity=0.382 Sum_probs=26.3
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 19 v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (205)
T cd03226 19 LSLDLYAGEIIALTGKNGAGKTTLAKILAG 48 (205)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 336788999999999999999999987765
No 125
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.23 E-value=0.0038 Score=54.00 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=27.0
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G 49 (200)
T PRK13540 19 QISFHLPAGGLLHLKGSNGAGKTTLLKLIAG 49 (200)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4447788999999999999999999987665
No 126
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.23 E-value=0.0036 Score=54.09 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=26.0
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELI 213 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii 213 (266)
|.=+++.+|++++|.|++|+|||||+..+.
T Consensus 13 ~isl~i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 13 NLDVSIPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 334689999999999999999999998664
No 127
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.23 E-value=0.0038 Score=55.49 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=27.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (242)
T PRK11124 20 DITLDCPQGETLVLLGPSGAGKSSLLRVLNL 50 (242)
T ss_pred eeeeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3347889999999999999999999987764
No 128
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.22 E-value=0.0037 Score=55.49 Aligned_cols=32 Identities=28% Similarity=0.430 Sum_probs=27.7
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+++.+|+.++|+|++|+|||||+..|+..
T Consensus 20 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 20 DVSLDIPSGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44478899999999999999999999887653
No 129
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.21 E-value=0.0038 Score=55.56 Aligned_cols=30 Identities=33% Similarity=0.371 Sum_probs=26.6
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 20 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (242)
T cd03295 20 LNLEIAKGEFLVLIGPSGSGKTTTMKMINR 49 (242)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 347788999999999999999999987764
No 130
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.21 E-value=0.0039 Score=55.68 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=27.6
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+..
T Consensus 21 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 21 GVNLEIPDNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred cceeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 44477889999999999999999999877653
No 131
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.20 E-value=0.0039 Score=54.21 Aligned_cols=30 Identities=30% Similarity=0.452 Sum_probs=26.6
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 19 LSLTVEPGEFLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 346789999999999999999999987765
No 132
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.19 E-value=0.004 Score=55.11 Aligned_cols=31 Identities=19% Similarity=0.425 Sum_probs=27.3
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (235)
T cd03261 18 GVDLDVRRGEILAIIGPSGSGKSTLLRLIVG 48 (235)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4446899999999999999999999987765
No 133
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.18 E-value=0.004 Score=55.17 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=26.5
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (236)
T TIGR03864 20 VSFTVRPGEFVALLGPNGAGKSTLFSLLTR 49 (236)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 346788999999999999999999987764
No 134
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.18 E-value=0.0041 Score=54.74 Aligned_cols=29 Identities=28% Similarity=0.507 Sum_probs=26.3
Q ss_pred ccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 186 LAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (232)
T cd03218 20 SLSVKQGEIVGLLGPNGAGKTTTFYMIVG 48 (232)
T ss_pred eeEecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 37889999999999999999999987765
No 135
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.18 E-value=0.0041 Score=52.42 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=26.7
Q ss_pred ccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 186 LAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 20 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 20 SLSVRRGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 377889999999999999999999877653
No 136
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=96.18 E-value=0.008 Score=58.28 Aligned_cols=64 Identities=20% Similarity=0.213 Sum_probs=49.1
Q ss_pred ccccccceEeecccc-cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHH
Q psy17544 174 EILVTGIKVVDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGN 237 (266)
Q Consensus 174 e~l~TGIraID~L~p-igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ 237 (266)
.-+.||+..+|-++- +-+|+=+.|-|.+|+|||+++.+++.+.+..++.-+.|.-.-+...|+.
T Consensus 176 ~gi~tG~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~ 240 (434)
T TIGR00665 176 TGVPTGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLA 240 (434)
T ss_pred CcccCCchhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHH
Confidence 458899999999874 8899999999999999999999999887654433344555554555543
No 137
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.17 E-value=0.004 Score=55.67 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=27.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 22 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 52 (253)
T PRK14267 22 GVDLKIPQNGVFALMGPSGCGKSTLLRTFNR 52 (253)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3447899999999999999999999987765
No 138
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.17 E-value=0.004 Score=55.66 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=26.9
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+++.+|+.++|+|++|+|||||+..|+.
T Consensus 23 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 23 GIDLDFNQNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3346789999999999999999999987764
No 139
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.17 E-value=0.0041 Score=52.67 Aligned_cols=30 Identities=37% Similarity=0.566 Sum_probs=26.4
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 19 ~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G 48 (173)
T cd03230 19 ISLTVEKGEIYGLLGPNGAGKTTLIKIILG 48 (173)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 346788999999999999999999987765
No 140
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.17 E-value=0.0038 Score=54.30 Aligned_cols=30 Identities=20% Similarity=0.419 Sum_probs=26.4
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 18 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 47 (213)
T cd03235 18 VSFEVKPGEFLAIVGPNGAGKSTLLKAILG 47 (213)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 336789999999999999999999987765
No 141
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.17 E-value=0.0038 Score=54.64 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=26.5
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 23 vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G 52 (220)
T cd03293 23 ISLSVEEGEFVALVGPSGCGKSTLLRIIAG 52 (220)
T ss_pred eeEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 346789999999999999999999987765
No 142
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.16 E-value=0.0042 Score=54.15 Aligned_cols=32 Identities=31% Similarity=0.343 Sum_probs=27.5
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 20 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 20 GLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34468899999999999999999999877653
No 143
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.15 E-value=0.0043 Score=54.91 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=27.2
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (243)
T TIGR01978 18 GVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG 48 (243)
T ss_pred ccceEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4447789999999999999999999987765
No 144
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.15 E-value=0.0042 Score=53.94 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=29.1
Q ss_pred eecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 183 ID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+|.=+.+.+|++++|+|++|+|||||+..|+.-
T Consensus 15 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 15 MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 377788999999999999999999999877653
No 145
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.15 E-value=0.0043 Score=54.68 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=26.9
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 20 ~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (234)
T cd03251 20 DISLDIPAGETVALVGPSGSGKSTLVNLIPR 50 (234)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3446788999999999999999999987765
No 146
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.15 E-value=0.0042 Score=54.14 Aligned_cols=31 Identities=29% Similarity=0.363 Sum_probs=26.9
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.=+.+-+|+.++|.|++|+|||||+..|+.-
T Consensus 24 ~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 24 VSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3467889999999999999999999877653
No 147
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.14 E-value=0.01 Score=52.33 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=40.1
Q ss_pred cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHH
Q psy17544 189 YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGND 238 (266)
Q Consensus 189 igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~e 238 (266)
+.+|+=+.|-|++|+|||+|+.+++.+.+..++.-++|.-.-+..+|+.+
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~ 59 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQ 59 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHH
Confidence 67999999999999999999999998877654456667766666666555
No 148
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.14 E-value=0.0035 Score=50.31 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=25.5
Q ss_pred cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 6 ~~i~~g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 6 LEIKPGEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEETTSEEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEcCCCEEEEEccCCCccccceeeeccc
Confidence 56789999999999999999999877653
No 149
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.13 E-value=0.0043 Score=55.81 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=27.0
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 30 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 60 (259)
T PRK14274 30 NINLSIPENEVTAIIGPSGCGKSTFIKTLNL 60 (259)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3347788999999999999999999997765
No 150
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.12 E-value=0.0046 Score=53.77 Aligned_cols=30 Identities=33% Similarity=0.363 Sum_probs=26.3
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 21 is~~i~~G~~~~l~G~nGsGKSTLl~~i~G 50 (214)
T TIGR02673 21 VSLHIRKGEFLFLTGPSGAGKTTLLKLLYG 50 (214)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 346789999999999999999999987654
No 151
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.11 E-value=0.0044 Score=54.81 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=27.6
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 20 NISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44567889999999999999999999877753
No 152
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=96.11 E-value=0.0045 Score=55.27 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=27.8
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+++-+|+.++|+|++|+|||||+..|+.
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 21 KINLDIEENQVTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 5567899999999999999999999987764
No 153
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.10 E-value=0.0045 Score=52.87 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=27.5
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+.+|+..+|.|++|+|||||+..|+..
T Consensus 18 ~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 18 DVSFEVRAGEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34477889999999999999999999877753
No 154
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.10 E-value=0.0047 Score=53.66 Aligned_cols=32 Identities=31% Similarity=0.381 Sum_probs=27.2
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 18 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 18 DLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 33467889999999999999999999877653
No 155
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.09 E-value=0.0081 Score=54.84 Aligned_cols=66 Identities=21% Similarity=0.385 Sum_probs=45.5
Q ss_pred ccccceEe-ecccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEe---ecCCchHHHHHHHH
Q psy17544 176 LVTGIKVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG---VGERTREGNDLYHE 242 (266)
Q Consensus 176 l~TGIraI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~al---IGER~rEv~ef~~~ 242 (266)
+.-|.+++ |.=+.|-+|+.+.|+|+||+|||||+..|.. ..+...+-+.+-. ++-+++|.+.+...
T Consensus 13 yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng-l~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 13 YPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG-LVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred cCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhc-ccCCCcceEEecccchhccchHHHHHHHHh
Confidence 33555555 3446789999999999999999999998865 3232223344444 67777777776654
No 156
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.09 E-value=0.0046 Score=53.95 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=26.5
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 23 i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G 52 (220)
T cd03245 23 VSLTIRAGEKVAIIGRVGSGKSTLLKLLAG 52 (220)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 346789999999999999999999987765
No 157
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.08 E-value=0.0048 Score=53.18 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=28.6
Q ss_pred EeecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 182 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 182 aID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
..|.=+.+-+|++++|.|++|+|||||+..|+..
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 16 LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred EEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3454467889999999999999999999887663
No 158
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.08 E-value=0.0048 Score=53.49 Aligned_cols=32 Identities=31% Similarity=0.358 Sum_probs=27.5
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+|++++|+|++|+|||||+..|+..
T Consensus 18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 18 GLSFTLAAGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44477889999999999999999999877653
No 159
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.08 E-value=0.0049 Score=54.71 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=27.8
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 19 NIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44578899999999999999999999877753
No 160
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.07 E-value=0.0051 Score=52.26 Aligned_cols=32 Identities=34% Similarity=0.580 Sum_probs=27.7
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 20 ~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 20 NLSLELKQGEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 44567889999999999999999999988764
No 161
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.07 E-value=0.0049 Score=55.69 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=27.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (255)
T PRK11248 19 DINLTLESGELLVVLGPSGCGKTTLLNLIAG 49 (255)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3446789999999999999999999987765
No 162
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=96.06 E-value=0.0047 Score=55.53 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=28.0
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 24 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred eeeEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45578999999999999999999999877653
No 163
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.06 E-value=0.0051 Score=54.61 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=27.7
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+++.+|+.++|+|++|+|||||+..|+..
T Consensus 21 ~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 21 DVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44478899999999999999999999877653
No 164
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=96.06 E-value=0.0046 Score=55.99 Aligned_cols=31 Identities=32% Similarity=0.484 Sum_probs=27.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 29 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 59 (265)
T PRK10575 29 PLSLTFPAGKVTGLIGHNGSGKSTLLKMLGR 59 (265)
T ss_pred eeeeEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 3447789999999999999999999987765
No 165
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.06 E-value=0.005 Score=54.89 Aligned_cols=31 Identities=26% Similarity=0.465 Sum_probs=27.5
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 21 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (241)
T PRK14250 21 DISVKFEGGAIYTIVGPSGAGKSTLIKLINR 51 (241)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4557889999999999999999999987765
No 166
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.06 E-value=0.0051 Score=54.85 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=27.0
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (250)
T PRK11264 21 GIDLEVKPGEVVAIIGPSGSGKTTLLRCINL 51 (250)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3447789999999999999999999987764
No 167
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.05 E-value=0.0059 Score=47.90 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=20.0
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+++|.|.+|+||||++.+++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999875
No 168
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.04 E-value=0.0051 Score=53.85 Aligned_cols=31 Identities=29% Similarity=0.317 Sum_probs=27.2
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|++++|.|++|+|||||+..|+.
T Consensus 29 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 59 (214)
T PRK13543 29 PLDFHVDAGEALLVQGDNGAGKTTLLRVLAG 59 (214)
T ss_pred cceEEECCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 4447789999999999999999999987765
No 169
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.03 E-value=0.0049 Score=54.52 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=27.7
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+..
T Consensus 21 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 21 GLSLTIPPGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred ceEEEecCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 34568899999999999999999999877753
No 170
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.03 E-value=0.0056 Score=51.72 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=27.6
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+.+|++.+|.|++|+|||||+..|+..
T Consensus 19 ~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 19 DLSFEIKPGDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred cCeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44477889999999999999999999877653
No 171
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.02 E-value=0.0058 Score=55.55 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=27.6
Q ss_pred EeecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 182 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 182 aID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+++.+..+.+|++++|.|++|+|||||+..|+.-
T Consensus 16 ~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 16 KLHRLPVPREGQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred hhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3444444889999999999999999999877654
No 172
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.01 E-value=0.0054 Score=54.24 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=27.0
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 27 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 57 (233)
T PRK11629 27 NVSFSIGEGEMMAIVGSSGSGKSTLLHLLGG 57 (233)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3346889999999999999999999987765
No 173
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.01 E-value=0.0054 Score=53.92 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=27.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 28 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 58 (228)
T PRK10584 28 GVELVVKRGETIALIGESGSGKSTLLAILAG 58 (228)
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 3447788999999999999999999987765
No 174
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.01 E-value=0.0054 Score=53.63 Aligned_cols=28 Identities=21% Similarity=0.459 Sum_probs=25.6
Q ss_pred cccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 49 (218)
T cd03290 22 IRIPTGQLTMIVGQVGCGKSSLLLAILG 49 (218)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 5788999999999999999999987765
No 175
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.00 E-value=0.0056 Score=52.15 Aligned_cols=31 Identities=32% Similarity=0.587 Sum_probs=26.7
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|.|++|+|||||+..|..
T Consensus 17 ~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G 47 (180)
T cd03214 17 DLSLSIEAGEIVGILGPNGAGKSTLLKTLAG 47 (180)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4446688999999999999999999987765
No 176
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.00 E-value=0.0055 Score=53.49 Aligned_cols=31 Identities=39% Similarity=0.512 Sum_probs=27.0
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 20 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (220)
T cd03263 20 DLSLNVYKGEIFGLLGHNGAGKTTTLKMLTG 50 (220)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3446788999999999999999999987765
No 177
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.99 E-value=0.0056 Score=54.84 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=27.0
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.=+.+-+|+.++|+|++|+|||||+..|+..
T Consensus 26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (254)
T PRK14273 26 INIKILKNSITALIGPSGCGKSTFLRTLNRM 56 (254)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3367899999999999999999999887653
No 178
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=95.98 E-value=0.0056 Score=54.77 Aligned_cols=31 Identities=32% Similarity=0.527 Sum_probs=27.3
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+++-+|+.++|.|++|+|||||+..|+.
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (252)
T TIGR03005 18 GLNFSVAAGEKVALIGPSGSGKSTILRILMT 48 (252)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4447889999999999999999999987765
No 179
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.97 E-value=0.0057 Score=54.26 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=27.1
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 21 LSLYVDPGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999999877753
No 180
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.97 E-value=0.0062 Score=51.55 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=26.5
Q ss_pred ccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 186 LAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 22 SFSIEPGESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 367889999999999999999999877753
No 181
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=95.97 E-value=0.0056 Score=55.04 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=27.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 22 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~laG 52 (258)
T PRK14241 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNR 52 (258)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3347788999999999999999999987765
No 182
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.96 E-value=0.0059 Score=52.92 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=27.4
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 18 ~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 18 DISLHVKKGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34467889999999999999999999987653
No 183
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=95.96 E-value=0.0057 Score=54.08 Aligned_cols=31 Identities=23% Similarity=0.463 Sum_probs=27.0
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 5 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 35 (230)
T TIGR02770 5 LNLSLKRGEVLALVGESGSGKSLTCLAILGL 35 (230)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3467889999999999999999999988764
No 184
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=95.96 E-value=0.0057 Score=57.55 Aligned_cols=36 Identities=28% Similarity=0.495 Sum_probs=29.9
Q ss_pred ceEeecc-cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 180 IKVVDLL-APYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 180 IraID~L-~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.+++|.+ +.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl 56 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGV 56 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 3456444 68999999999999999999999887653
No 185
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.96 E-value=0.0057 Score=54.69 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=26.6
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 25 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 25 ISLEFEQNQVTALIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred eeEEEeCCCEEEEECCCCCCHHHHHHHHHh
Confidence 336789999999999999999999998875
No 186
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=95.95 E-value=0.0057 Score=54.68 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=27.6
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+..
T Consensus 21 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred cceEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44477889999999999999999999877653
No 187
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.95 E-value=0.018 Score=48.38 Aligned_cols=46 Identities=22% Similarity=0.292 Sum_probs=34.8
Q ss_pred eeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHH
Q psy17544 195 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYH 241 (266)
Q Consensus 195 ~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~ 241 (266)
+.|.|++|+|||+|+.+++.+.++. +.-++|...-|..+++.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~-g~~v~~~s~e~~~~~~~~~~~ 47 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR-GEPGLYVTLEESPEELIENAE 47 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCCCHHHHHHHHH
Confidence 4689999999999999999876543 456777777777776655443
No 188
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=95.94 E-value=0.0059 Score=56.52 Aligned_cols=30 Identities=30% Similarity=0.420 Sum_probs=26.8
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 12 vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~G 41 (302)
T TIGR01188 12 VNFKVREGEVFGFLGPNGAGKTTTIRMLTT 41 (302)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 346889999999999999999999987765
No 189
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.94 E-value=0.006 Score=53.53 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=26.0
Q ss_pred cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 35 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 35 FTLHPGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 67889999999999999999999877653
No 190
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=95.94 E-value=0.0069 Score=57.53 Aligned_cols=32 Identities=28% Similarity=0.465 Sum_probs=29.0
Q ss_pred eecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 183 ID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
+|.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 15 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaG 46 (352)
T PRK11144 15 LTVNLTLPAQGITAIFGRSGAGKTSLINAISG 46 (352)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 47778899999999999999999999987765
No 191
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=95.93 E-value=0.0058 Score=55.34 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=27.5
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+.+|++++|+|++|+|||||+..|+..
T Consensus 25 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 56 (265)
T PRK10253 25 NLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL 56 (265)
T ss_pred ecceEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 34478889999999999999999999877653
No 192
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.93 E-value=0.0063 Score=54.33 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=27.0
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 21 ~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 21 NVTMKIFKNQITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred eeeEeecCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3447788999999999999999999987764
No 193
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.93 E-value=0.0063 Score=53.53 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=27.5
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 5 ~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 5 KTDFVMGYHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33467899999999999999999999887753
No 194
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.93 E-value=0.0059 Score=53.95 Aligned_cols=31 Identities=19% Similarity=0.468 Sum_probs=27.9
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 47 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAG 47 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 6668899999999999999999999987765
No 195
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.93 E-value=0.006 Score=55.25 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=26.5
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 40 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 40 ISMDIEKHAVTALIGPSGCGKSTFLRSINR 69 (268)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 346788999999999999999999987765
No 196
>PRK10908 cell division protein FtsE; Provisional
Probab=95.93 E-value=0.0064 Score=53.30 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=26.6
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (222)
T PRK10908 21 VTFHMRPGEMAFLTGHSGAGKSTLLKLICG 50 (222)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 336788999999999999999999987765
No 197
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.93 E-value=0.0061 Score=55.40 Aligned_cols=31 Identities=26% Similarity=0.389 Sum_probs=27.2
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 30 ~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~G 60 (257)
T PRK11247 30 QLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG 60 (257)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4446789999999999999999999987765
No 198
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=95.92 E-value=0.006 Score=55.48 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=27.3
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 25 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (272)
T PRK15056 25 DASFTVPGGSIAALVGVNGSGKSTLFKALMG 55 (272)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4557899999999999999999999987764
No 199
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.92 E-value=0.0062 Score=53.42 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=25.8
Q ss_pred ccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 186 LAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (223)
T TIGR03740 20 SLTVPKNSVYGLLGPNGAGKSTLLKMITG 48 (223)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 36788999999999999999999987764
No 200
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=95.92 E-value=0.0063 Score=54.31 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=27.2
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (247)
T TIGR00972 19 NINLDIPKNQVTALIGPSGCGKSTLLRSLNR 49 (247)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4447788999999999999999999987765
No 201
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.92 E-value=0.0069 Score=53.44 Aligned_cols=29 Identities=34% Similarity=0.585 Sum_probs=25.5
Q ss_pred cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+.+-+|+.++|+|++|+|||||+..|+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35779999999999999999999887753
No 202
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.92 E-value=0.0067 Score=52.65 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=27.7
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 18 ~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 18 GVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred ccceEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44568999999999999999999999877653
No 203
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.90 E-value=0.0075 Score=56.09 Aligned_cols=57 Identities=28% Similarity=0.445 Sum_probs=44.9
Q ss_pred cccccccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEE
Q psy17544 169 MSVEQEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 226 (266)
Q Consensus 169 R~~~~e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~ 226 (266)
+....+.+.||.+.+|.++. +-+|.-.-|||+.|+|||+|+++++.+..+ .++.++|
T Consensus 35 ~~~~~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~-~g~~a~f 93 (279)
T COG0468 35 RREDIEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQK-PGGKAAF 93 (279)
T ss_pred HhhccccccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhc-CCCeEEE
Confidence 33447889999999999998 337888899999999999999999987543 3444443
No 204
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.90 E-value=0.0065 Score=53.24 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=27.6
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 26 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 26 NVSLTVNAGECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34478899999999999999999999877653
No 205
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=95.90 E-value=0.006 Score=58.14 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=28.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 20 ~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl 51 (353)
T PRK10851 20 DISLDIPSGQMVALLGPSGSGKTTLLRIIAGL 51 (353)
T ss_pred EeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45578899999999999999999999877753
No 206
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=95.90 E-value=0.0064 Score=53.92 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=26.2
Q ss_pred ccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 186 LAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 5 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 5 NLTIQQGEFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999877653
No 207
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.90 E-value=0.0065 Score=53.59 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=27.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 25 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (225)
T PRK10247 25 NISFSLRAGEFKLITGPSGCGKSTLLKIVAS 55 (225)
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4447788999999999999999999987765
No 208
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=95.90 E-value=0.0064 Score=54.26 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=27.0
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 23 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 23 SVSLDFYPNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4447788999999999999999999988764
No 209
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.90 E-value=0.012 Score=56.18 Aligned_cols=70 Identities=17% Similarity=0.213 Sum_probs=51.2
Q ss_pred cccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhc-----CCcEEEEEeecC--CchHHHHHHHH
Q psy17544 173 QEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGYSVFAGVGE--RTREGNDLYHE 242 (266)
Q Consensus 173 ~e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~-----~~~v~V~alIGE--R~rEv~ef~~~ 242 (266)
...+.||++.+|-++. +-+|.=+-|+|++|+|||+|+.+++.+.+.. .++.++|.-.-+ +.+...++.+.
T Consensus 102 ~~~i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~ 180 (342)
T PLN03186 102 IIQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAER 180 (342)
T ss_pred cceeCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHH
Confidence 4568999999999877 6688999999999999999999998764311 112567766655 44445555443
No 210
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.88 E-value=0.0067 Score=52.64 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=27.9
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 19 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred cceEEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 55577899999999999999999999877653
No 211
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=95.88 E-value=0.0066 Score=53.98 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=26.1
Q ss_pred cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 21 LEVPTGSLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 67999999999999999999999877653
No 212
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=95.87 E-value=0.0064 Score=57.94 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=27.2
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 24 ~isl~i~~Ge~~~llGpsGsGKSTLLr~IaG 54 (351)
T PRK11432 24 NLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG 54 (351)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHHC
Confidence 3557889999999999999999999987764
No 213
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=95.87 E-value=0.0068 Score=55.01 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=27.2
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 39 vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 69 (267)
T PRK14237 39 IDMQFEKNKITALIGPSGSGKSTYLRSLNRM 69 (267)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4478889999999999999999999977653
No 214
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.87 E-value=0.026 Score=48.81 Aligned_cols=42 Identities=29% Similarity=0.430 Sum_probs=33.5
Q ss_pred cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecC
Q psy17544 189 YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE 231 (266)
Q Consensus 189 igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGE 231 (266)
+-+|+=+.|+|++|+|||+|+.+++.+.++. +.-++|.-.-+
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~-g~~v~yi~~e~ 50 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAARQ-GKKVVYIDTEG 50 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCC
Confidence 5689999999999999999999999876543 45666666643
No 215
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=95.86 E-value=0.0065 Score=55.18 Aligned_cols=31 Identities=23% Similarity=0.437 Sum_probs=27.6
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (269)
T PRK11831 25 NISLTVPRGKITAIMGPSGIGKTTLLRLIGG 55 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4558899999999999999999999987765
No 216
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=95.85 E-value=0.0068 Score=54.86 Aligned_cols=31 Identities=29% Similarity=0.578 Sum_probs=27.5
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 29 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 59 (265)
T TIGR02769 29 NVSLSIEEGETVGLLGRSGCGKSTLARLLLG 59 (265)
T ss_pred CceeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 5557899999999999999999999987765
No 217
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.85 E-value=0.0085 Score=56.56 Aligned_cols=36 Identities=33% Similarity=0.552 Sum_probs=32.0
Q ss_pred ceEeecc-cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 180 IKVVDLL-APYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 180 IraID~L-~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
++++|.+ +.+.+|+.+||.|.||+|||+++..+..-
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~l 54 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGL 54 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhc
Confidence 6788655 78999999999999999999999988873
No 218
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.85 E-value=0.0067 Score=53.96 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=27.4
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+..
T Consensus 39 ~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 39 GISFTIEKGEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34467889999999999999999999987753
No 219
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.85 E-value=0.0069 Score=54.96 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=27.8
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+..
T Consensus 27 ~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 27 DVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44578889999999999999999999877653
No 220
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.84 E-value=0.0054 Score=60.70 Aligned_cols=33 Identities=24% Similarity=0.490 Sum_probs=28.6
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
|.=+.+-+|++++|.|++|+|||||+.-+.+-.
T Consensus 353 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 353 GVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445789999999999999999999998887643
No 221
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=95.84 E-value=0.0067 Score=57.90 Aligned_cols=31 Identities=29% Similarity=0.373 Sum_probs=27.6
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 22 ~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaG 52 (356)
T PRK11650 22 GIDLDVADGEFIVLVGPSGCGKSTLLRMVAG 52 (356)
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHHC
Confidence 4558899999999999999999999987765
No 222
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=95.84 E-value=0.0072 Score=54.74 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=27.2
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 28 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 58 (264)
T PRK14243 28 NVWLDIPKNQITAFIGPSGCGKSTILRCFNR 58 (264)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3447788999999999999999999998774
No 223
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.84 E-value=0.0069 Score=54.70 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=26.5
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 21 is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 50 (258)
T PRK13548 21 VSLTLRPGEVVAILGPNGAGKSTLLRALSG 50 (258)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 336788999999999999999999987765
No 224
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=95.83 E-value=0.0068 Score=56.14 Aligned_cols=31 Identities=35% Similarity=0.577 Sum_probs=27.2
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+++-+|+.++|.|++|+|||||+..|+.
T Consensus 22 ~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~G 52 (303)
T TIGR01288 22 DLSFTIARGECFGLLGPNGAGKSTIARMLLG 52 (303)
T ss_pred ceeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3447899999999999999999999987765
No 225
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.83 E-value=0.0063 Score=55.72 Aligned_cols=44 Identities=18% Similarity=0.374 Sum_probs=33.4
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEE
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 227 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~a 227 (266)
|.=+.+-||+-.+|.||||+|||||+..|+--..-.++.+-+++
T Consensus 26 ~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G 69 (263)
T COG1127 26 GVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDG 69 (263)
T ss_pred CceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcC
Confidence 44577899999999999999999999877753323344466654
No 226
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=95.83 E-value=0.0068 Score=57.76 Aligned_cols=32 Identities=31% Similarity=0.446 Sum_probs=27.8
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+..|+.++|+|++|+|||||+..|+-.
T Consensus 22 ~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl 53 (353)
T TIGR03265 22 DISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL 53 (353)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 45677889999999999999999999877653
No 227
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.82 E-value=0.0067 Score=55.66 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=26.7
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 30 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 59 (289)
T PRK13645 30 TSLTFKKNKVTCVIGTTGSGKSTMIQLTNG 59 (289)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhc
Confidence 346889999999999999999999987765
No 228
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.82 E-value=0.0073 Score=54.05 Aligned_cols=30 Identities=13% Similarity=0.347 Sum_probs=26.5
Q ss_pred ccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 186 LAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
=+.+-+|+.++|.|++|+|||||+..|+.-
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (252)
T PRK14256 24 SMDFPENSVTAIIGPSGCGKSTVLRSINRM 53 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 367889999999999999999999887653
No 229
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=95.82 E-value=0.007 Score=57.01 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=28.8
Q ss_pred eEe-ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 181 KVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 181 raI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
+++ |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~g 63 (327)
T PRK11308 29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTM 63 (327)
T ss_pred eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHc
Confidence 444 4457889999999999999999999987765
No 230
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.82 E-value=0.0066 Score=55.14 Aligned_cols=31 Identities=32% Similarity=0.517 Sum_probs=26.9
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 19 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (271)
T PRK13638 19 GLNLDFSLSPVTGLVGANGCGKSTLFMNLSG 49 (271)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 3447788999999999999999999987765
No 231
>KOG0057|consensus
Probab=95.82 E-value=0.01 Score=59.60 Aligned_cols=36 Identities=25% Similarity=0.458 Sum_probs=30.5
Q ss_pred cccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcE
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY 223 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v 223 (266)
++|.+|.|++|.|++|+||||++..+-+.. +.+|.+
T Consensus 373 f~I~kGekVaIvG~nGsGKSTilr~LlrF~-d~sG~I 408 (591)
T KOG0057|consen 373 FTIPKGEKVAIVGSNGSGKSTILRLLLRFF-DYSGSI 408 (591)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHHHh-ccCCcE
Confidence 689999999999999999999999999865 433333
No 232
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.81 E-value=0.0078 Score=51.92 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=26.9
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 18 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (198)
T TIGR01189 18 GLSFTLNAGEALQVTGPNGIGKTTLLRILAG 48 (198)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3456788999999999999999999987765
No 233
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.81 E-value=0.007 Score=55.61 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=27.4
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+++.+|+.++|+|++|+|||||+..|+.
T Consensus 25 ~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~G 55 (287)
T PRK13641 25 NISFELEEGSFVALVGHTGSGKSTLMQHFNA 55 (287)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4447889999999999999999999987765
No 234
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.81 E-value=0.0075 Score=53.83 Aligned_cols=31 Identities=26% Similarity=0.384 Sum_probs=27.3
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 21 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (250)
T PRK14266 21 NVNLDIPKNSVTALIGPSGCGKSTFIRTLNR 51 (250)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4457788999999999999999999988764
No 235
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.80 E-value=0.007 Score=55.17 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=26.9
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.=+.+-+|+.++|+|++|+|||||+..|+..
T Consensus 26 is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 26 VNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3467889999999999999999999877653
No 236
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.80 E-value=0.0074 Score=54.53 Aligned_cols=31 Identities=26% Similarity=0.474 Sum_probs=27.0
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 22 ~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~G 52 (251)
T PRK09544 22 DVSLELKPGKILTLLGPNGAGKSTLVRVVLG 52 (251)
T ss_pred eEEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3347788999999999999999999987765
No 237
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.80 E-value=0.0074 Score=53.95 Aligned_cols=31 Identities=13% Similarity=0.304 Sum_probs=27.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 21 GISMEIEEKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred eeeEEEeCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4447789999999999999999999998763
No 238
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.80 E-value=0.026 Score=47.84 Aligned_cols=67 Identities=22% Similarity=0.219 Sum_probs=37.6
Q ss_pred cccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcC--------CcEEEEEeecCCch-HHHHHHHHh
Q psy17544 177 VTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAH--------GGYSVFAGVGERTR-EGNDLYHEM 243 (266)
Q Consensus 177 ~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~--------~~v~V~alIGER~r-Ev~ef~~~l 243 (266)
.++++..|-++. +.+|+-..|.|++|+|||+++.+++...+..+ ....|+-.-.|-.. ++.+.+..+
T Consensus 15 ~~~~~~~~~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~ 92 (193)
T PF13481_consen 15 DTGFPPLDWLIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRAL 92 (193)
T ss_dssp HS------EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHH
T ss_pred cCCCCCcceeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHH
Confidence 344444443333 34899999999999999999999998876421 12334444444443 666655544
No 239
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.80 E-value=0.0073 Score=54.90 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=26.5
Q ss_pred ccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 186 LAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
=+.+.+|+.++|.|++|+|||||+..|+.-
T Consensus 29 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (271)
T PRK13632 29 SFEINEGEYVAILGHNGSGKSTISKILTGL 58 (271)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 367889999999999999999999877653
No 240
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.79 E-value=0.0078 Score=52.20 Aligned_cols=32 Identities=34% Similarity=0.592 Sum_probs=27.3
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+..
T Consensus 26 ~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 26 NVSFKVKAGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 33467889999999999999999999977653
No 241
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=95.79 E-value=0.0076 Score=54.86 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=27.4
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 42 ~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl 73 (271)
T PRK14238 42 NINLDIHENEVTAIIGPSGCGKSTYIKTLNRM 73 (271)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34467889999999999999999999877753
No 242
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.78 E-value=0.0077 Score=53.85 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=27.5
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 23 ~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 23 DINLDIYKREVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 44468999999999999999999999877653
No 243
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.78 E-value=0.0076 Score=54.27 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=27.2
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 30 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 60 (258)
T PRK14268 30 NVSMQIPKNSVTALIGPSGCGKSTFIRCLNR 60 (258)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4447889999999999999999999987764
No 244
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.78 E-value=0.0075 Score=53.91 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=27.6
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 23 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred eeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 44467889999999999999999999877753
No 245
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.78 E-value=0.0078 Score=53.69 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=26.8
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 22 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 52 (252)
T PRK14272 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINR 52 (252)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3346788999999999999999999987765
No 246
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.78 E-value=0.0077 Score=53.87 Aligned_cols=31 Identities=19% Similarity=0.403 Sum_probs=26.8
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+..+|+|++|+|||||+..|+.
T Consensus 22 ~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~G 52 (251)
T PRK14249 22 NINMDFPERQITAIIGPSGCGKSTLLRALNR 52 (251)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3346788999999999999999999987765
No 247
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=95.78 E-value=0.0075 Score=54.17 Aligned_cols=31 Identities=23% Similarity=0.478 Sum_probs=27.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 51 (254)
T PRK10418 21 GVSLTLQRGRVLALVGGSGSGKSLTCAAALG 51 (254)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3447899999999999999999999987764
No 248
>PRK08118 topology modulation protein; Reviewed
Probab=95.77 E-value=0.0089 Score=50.92 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=21.3
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+|+.|+|++|+|||||+..|.+.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999875
No 249
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.77 E-value=0.014 Score=48.69 Aligned_cols=36 Identities=42% Similarity=0.551 Sum_probs=22.7
Q ss_pred eeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGND 238 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~e 238 (266)
||.|.|++++|||||+..|.+. . +.+ +.|-+||+.+
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~---g---~~~---v~E~ar~~~~ 36 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR---G---YPV---VPEYAREIIE 36 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH---T----EE---E--TTHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc---C---CeE---EeecHHHHHH
Confidence 7899999999999999999863 2 332 3777776543
No 250
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.76 E-value=0.0069 Score=52.69 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=27.3
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+.-
T Consensus 25 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 25 DFSGVVKPGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred eEEEEECCCcEEEEECCCCCCHHHHHHHhccc
Confidence 33467889999999999999999999877653
No 251
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=95.76 E-value=0.0078 Score=54.26 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=27.0
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 31 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 61 (260)
T PRK10744 31 NINLDIAKNQVTAFIGPSGCGKSTLLRTFNR 61 (260)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3347788999999999999999999988765
No 252
>PRK07261 topology modulation protein; Provisional
Probab=95.76 E-value=0.0084 Score=51.13 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=21.0
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+|+.|+|.+|+|||||+..++..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999998764
No 253
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.76 E-value=0.0097 Score=62.40 Aligned_cols=61 Identities=21% Similarity=0.395 Sum_probs=48.3
Q ss_pred cccccccceEeecccc---cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCch
Q psy17544 173 QEILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTR 234 (266)
Q Consensus 173 ~e~l~TGIraID~L~p---igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~r 234 (266)
-+.+.||+..+|.++. +-+|.-+.|+|++|+|||+|+.+++.+.++ .+..++|.---+..+
T Consensus 38 v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~-~G~~v~yId~E~t~~ 101 (790)
T PRK09519 38 ISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA-AGGVAAFIDAEHALD 101 (790)
T ss_pred CceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEECCccchh
Confidence 3578899999999997 668999999999999999999998876543 345666666554444
No 254
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.76 E-value=0.015 Score=54.83 Aligned_cols=44 Identities=32% Similarity=0.313 Sum_probs=38.7
Q ss_pred cccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 173 QEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 173 ~e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
...+.||++.+|.++. +-+|.=+.|+|++|+|||+|+.+++.+.
T Consensus 75 ~~~~~tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~ 120 (316)
T TIGR02239 75 VIQLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTC 120 (316)
T ss_pred cceeCCCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHH
Confidence 4568999999999877 6689999999999999999999998753
No 255
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.75 E-value=0.0081 Score=53.00 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=27.6
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 19 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 19 DVSFTIPAGKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 44567889999999999999999999887653
No 256
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.75 E-value=0.0085 Score=50.64 Aligned_cols=30 Identities=27% Similarity=0.449 Sum_probs=26.5
Q ss_pred ccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 186 LAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 22 ~~~i~~G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 22 SLTIKPGEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 367889999999999999999999877653
No 257
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.75 E-value=0.008 Score=53.67 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=27.2
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (246)
T PRK14269 20 DINMQIEQNKITALIGASGCGKSTFLRCFNR 50 (246)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4447788999999999999999999987765
No 258
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.74 E-value=0.0083 Score=53.50 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=26.6
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (249)
T PRK14253 22 INLPIPARQVTALIGPSGCGKSTLLRCLNR 51 (249)
T ss_pred ceEEecCCCEEEEECCCCCCHHHHHHHHHh
Confidence 336899999999999999999999987765
No 259
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=95.74 E-value=0.0074 Score=53.86 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=26.7
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 25 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 55 (252)
T CHL00131 25 GLNLSINKGEIHAIMGPNGSGKSTLSKVIAG 55 (252)
T ss_pred cceeEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 3347788999999999999999999987664
No 260
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.74 E-value=0.0081 Score=51.93 Aligned_cols=32 Identities=22% Similarity=0.410 Sum_probs=27.6
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+++.+|+.++|.|++|+|||||+..|+..
T Consensus 27 ~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 27 NVSGKAKPGELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred cceEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44477899999999999999999999877653
No 261
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=95.74 E-value=0.0079 Score=54.69 Aligned_cols=31 Identities=26% Similarity=0.507 Sum_probs=27.3
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 30 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 60 (268)
T PRK10419 30 NVSLSLKSGETVALLGRSGCGKSTLARLLVG 60 (268)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4447889999999999999999999987764
No 262
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.74 E-value=0.0088 Score=53.15 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.9
Q ss_pred cccccccCceeeeecCCCccHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLI 209 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~ 209 (266)
.=+.+.+|+.++|.|++|+|||||+
T Consensus 14 vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 14 VDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred ceeecCCCcEEEEEcCCCCCHHHHH
Confidence 3478999999999999999999997
No 263
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.72 E-value=0.0083 Score=54.90 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=28.2
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 39 ~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 70 (276)
T PRK14271 39 QVSMGFPARAVTSLMGPTGSGKTTFLRTLNRM 70 (276)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 55578899999999999999999999988753
No 264
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.71 E-value=0.0086 Score=53.56 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=26.4
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=+++.+|+.++|+|++|+|||||+..|+.
T Consensus 23 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 52 (251)
T PRK14270 23 INLPIYENKITALIGPSGCGKSTFLRCLNR 52 (251)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 336788999999999999999999987764
No 265
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.71 E-value=0.0078 Score=52.25 Aligned_cols=30 Identities=33% Similarity=0.503 Sum_probs=25.6
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+| .++|.|++|+|||||+..|+.
T Consensus 18 ~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 18 GVSLTLGPG-MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred ceeEEEcCC-cEEEECCCCCCHHHHHHHHhC
Confidence 344677889 999999999999999988765
No 266
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=95.71 E-value=0.0084 Score=53.87 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=27.4
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 23 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 23 GVSLQANAGDVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34467889999999999999999999877653
No 267
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=95.70 E-value=0.0081 Score=56.72 Aligned_cols=34 Identities=26% Similarity=0.519 Sum_probs=29.5
Q ss_pred eEe-ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 181 KVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 181 raI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
+++ |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 35 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~G 69 (331)
T PRK15079 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIG 69 (331)
T ss_pred EEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 455 5567899999999999999999999988765
No 268
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=95.70 E-value=0.0079 Score=56.74 Aligned_cols=35 Identities=26% Similarity=0.514 Sum_probs=29.2
Q ss_pred ceEee-cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 180 IKVVD-LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 180 IraID-~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
++++| .=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~G 64 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMG 64 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHc
Confidence 34553 447899999999999999999999988775
No 269
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.70 E-value=0.0086 Score=53.61 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=26.6
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 25 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 25 ITISIPKNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred eEEEECCCcEEEEECCCCCCHHHHHHHHhc
Confidence 337888999999999999999999988864
No 270
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.70 E-value=0.0098 Score=53.70 Aligned_cols=27 Identities=33% Similarity=0.596 Sum_probs=24.3
Q ss_pred ccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 188 PYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 188 pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.+.+|+.++|+|++|+|||||+..|+.
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~G 47 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAG 47 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 467999999999999999999987765
No 271
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.70 E-value=0.0083 Score=55.11 Aligned_cols=32 Identities=25% Similarity=0.459 Sum_probs=27.6
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl 56 (286)
T PRK13646 25 DVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL 56 (286)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 33467889999999999999999999988753
No 272
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.69 E-value=0.0079 Score=53.25 Aligned_cols=30 Identities=30% Similarity=0.455 Sum_probs=26.5
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 24 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T PRK11614 24 VSLHINQGEIVTLIGANGAGKTTLLGTLCG 53 (237)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 347889999999999999999999987764
No 273
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.68 E-value=0.0088 Score=54.41 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=27.6
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 42 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl 73 (269)
T cd03294 42 DVSLDVREGEIFVIMGLSGSGKSTLLRCINRL 73 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44477889999999999999999999877653
No 274
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.67 E-value=0.0086 Score=52.70 Aligned_cols=32 Identities=25% Similarity=0.462 Sum_probs=27.6
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+++-+|+.++|.|++|+|||||+..|+..
T Consensus 25 ~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~ 56 (226)
T cd03234 25 DVSLHVESGQVMAILGSSGSGKTTLLDAISGR 56 (226)
T ss_pred CceEEEcCCeEEEEECCCCCCHHHHHHHHhCc
Confidence 34567899999999999999999999977754
No 275
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=95.67 E-value=0.0086 Score=56.35 Aligned_cols=35 Identities=23% Similarity=0.480 Sum_probs=29.6
Q ss_pred eEe-ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 181 KVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 181 raI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+++ |.=+.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gl 56 (326)
T PRK11022 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGL 56 (326)
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 455 34488999999999999999999999887763
No 276
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.67 E-value=0.013 Score=53.10 Aligned_cols=31 Identities=29% Similarity=0.489 Sum_probs=27.0
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 26 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 56 (261)
T PRK14263 26 DSHVPIRKNEITGFIGPSGCGKSTVLRSLNR 56 (261)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 4457789999999999999999999987754
No 277
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.66 E-value=0.0093 Score=53.27 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=27.0
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 22 ~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 52 (251)
T PRK14251 22 GISLDFEEKELTALIGPSGCGKSTFLRCLNR 52 (251)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 3447788999999999999999999987765
No 278
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.66 E-value=0.0089 Score=52.16 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=28.5
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred eeEEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 55688999999999999999999999887754
No 279
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.66 E-value=0.0089 Score=54.01 Aligned_cols=62 Identities=21% Similarity=0.313 Sum_probs=40.2
Q ss_pred ceEe-ecccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEee---cCCchHHHHHHHH
Q psy17544 180 IKVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV---GERTREGNDLYHE 242 (266)
Q Consensus 180 IraI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alI---GER~rEv~ef~~~ 242 (266)
+.++ |.=+.+-+|.-+.|.|+||+|||||+..+.- ..+.+.+.+.|.+. -...++..+|.++
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~-ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~ 83 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG-LDKPTSGEVLINGKDLTKLSEKELAKLRRK 83 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhc-ccCCCCceEEECCEEcCcCCHHHHHHHHHH
Confidence 4455 5557899999999999999999999986643 33334345444441 1223345555544
No 280
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.66 E-value=0.0086 Score=55.11 Aligned_cols=31 Identities=32% Similarity=0.472 Sum_probs=27.7
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 24 ~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~G 54 (288)
T PRK13643 24 DIDLEVKKGSYTALIGHTGSGKSTLLQHLNG 54 (288)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHHHHHhc
Confidence 5667899999999999999999999987764
No 281
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.66 E-value=0.0088 Score=54.77 Aligned_cols=31 Identities=32% Similarity=0.488 Sum_probs=27.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 19 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG 49 (272)
T PRK13547 19 DLSLRIEPGRVTALLGRNGAGKSTLLKALAG 49 (272)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3446789999999999999999999987765
No 282
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=95.65 E-value=0.0085 Score=57.67 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=27.6
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 32 ~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaG 62 (375)
T PRK09452 32 NLDLTINNGEFLTLLGPSGCGKTTVLRLIAG 62 (375)
T ss_pred eeEEEEeCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4558899999999999999999999987764
No 283
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=95.64 E-value=0.0091 Score=53.80 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=26.9
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 22 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 52 (262)
T PRK09984 22 AVDLNIHHGEMVALLGPSGSGKSTLLRHLSG 52 (262)
T ss_pred cceEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4446788999999999999999999987765
No 284
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.63 E-value=0.0092 Score=54.87 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=27.5
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 57 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~G 87 (286)
T PRK14275 57 KVNADILSKYVTAIIGPSGCGKSTFLRAINR 87 (286)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4557899999999999999999999987764
No 285
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.63 E-value=0.0095 Score=52.66 Aligned_cols=32 Identities=34% Similarity=0.563 Sum_probs=27.6
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 40 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 40 DVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44468899999999999999999999877753
No 286
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.62 E-value=0.0098 Score=54.31 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=27.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 38 ~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~G 68 (274)
T PRK14265 38 DVHLKIPAKKIIAFIGPSGCGKSTLLRCFNR 68 (274)
T ss_pred eeeeEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4447789999999999999999999987763
No 287
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=95.62 E-value=0.009 Score=55.70 Aligned_cols=31 Identities=29% Similarity=0.455 Sum_probs=27.3
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 25 ~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~G 55 (305)
T PRK13651 25 NVSVEINQGEFIAIIGQTGSGKTTFIEHLNA 55 (305)
T ss_pred eeEEEEeCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4457899999999999999999999987764
No 288
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.62 E-value=0.0093 Score=54.22 Aligned_cols=31 Identities=23% Similarity=0.489 Sum_probs=27.2
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 31 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 61 (269)
T PRK14259 31 NVFCDIPRGKVTALIGPSGCGKSTVLRSLNR 61 (269)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3347899999999999999999999988765
No 289
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.61 E-value=0.0097 Score=53.80 Aligned_cols=41 Identities=27% Similarity=0.454 Sum_probs=30.2
Q ss_pred cccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEe
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 228 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~al 228 (266)
+++.+|+.+.|+||||+|||||+..| +..-.-+.+-+.+.+
T Consensus 23 l~v~~Gevv~iiGpSGSGKSTlLRcl-N~LE~~~~G~I~i~g 63 (240)
T COG1126 23 LSVEKGEVVVIIGPSGSGKSTLLRCL-NGLEEPDSGSITVDG 63 (240)
T ss_pred eeEcCCCEEEEECCCCCCHHHHHHHH-HCCcCCCCceEEECC
Confidence 67999999999999999999999755 333333434454444
No 290
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.61 E-value=0.0096 Score=52.87 Aligned_cols=31 Identities=23% Similarity=0.452 Sum_probs=26.9
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+++.+|+.++|.|++|+|||||+..|+.
T Consensus 17 ~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G 47 (235)
T cd03299 17 NVSLEVERGDYFVILGPTGSGKSVLLETIAG 47 (235)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3347888999999999999999999987765
No 291
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.61 E-value=0.01 Score=51.86 Aligned_cols=32 Identities=28% Similarity=0.572 Sum_probs=27.4
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+-.
T Consensus 22 ~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 22 NISFSIKPGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred ceEEEECCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 34477889999999999999999999877653
No 292
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=95.60 E-value=0.01 Score=53.87 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=27.5
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 37 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 68 (267)
T PRK14235 37 DVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRM 68 (267)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 44467889999999999999999999877653
No 293
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.59 E-value=0.0098 Score=54.30 Aligned_cols=30 Identities=33% Similarity=0.582 Sum_probs=26.7
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 24 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (274)
T PRK13647 24 LSLSIPEGSKTALLGPNGAGKSTLLLHLNG 53 (274)
T ss_pred EEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 337889999999999999999999987765
No 294
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=95.59 E-value=0.0094 Score=56.72 Aligned_cols=31 Identities=26% Similarity=0.389 Sum_probs=27.2
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|..
T Consensus 23 ~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~g 53 (343)
T TIGR02314 23 NVSLHVPAGQIYGVIGASGAGKSTLIRCVNL 53 (343)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4457899999999999999999999987755
No 295
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.59 E-value=0.01 Score=52.47 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=27.7
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 18 ~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 18 GVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 33477889999999999999999999988764
No 296
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.58 E-value=0.0098 Score=53.58 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=27.8
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+++-+|+.++|.|++|+|||||+..|+..
T Consensus 25 ~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 56 (259)
T PRK14260 25 GISMDIYRNKVTAIIGPSGCGKSTFIKTLNRI 56 (259)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34478889999999999999999999988763
No 297
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.57 E-value=0.011 Score=53.35 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=26.6
Q ss_pred ccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 186 LAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 41 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (257)
T cd03288 41 KAYIKPGQKVGICGRTGSGKSSLSLAFFRM 70 (257)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 367889999999999999999999877653
No 298
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.56 E-value=0.017 Score=52.37 Aligned_cols=52 Identities=19% Similarity=0.423 Sum_probs=31.2
Q ss_pred eeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEe-ecCCchHHHHHHHHhHhcCcc
Q psy17544 195 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG-VGERTREGNDLYHEMIESGVI 249 (266)
Q Consensus 195 ~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~al-IGER~rEv~ef~~~l~~~gvl 249 (266)
+.++||+|+|||||+.-|++.. ..+ ...+.+ .=++..+....+..+.+..++
T Consensus 53 ~lf~GPPG~GKTTLA~IIA~e~-~~~--~~~~sg~~i~k~~dl~~il~~l~~~~IL 105 (233)
T PF05496_consen 53 MLFYGPPGLGKTTLARIIANEL-GVN--FKITSGPAIEKAGDLAAILTNLKEGDIL 105 (233)
T ss_dssp EEEESSTTSSHHHHHHHHHHHC-T----EEEEECCC--SCHHHHHHHHT--TT-EE
T ss_pred EEEECCCccchhHHHHHHHhcc-CCC--eEeccchhhhhHHHHHHHHHhcCCCcEE
Confidence 5689999999999998676642 332 433333 336777777777766554443
No 299
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.56 E-value=0.0099 Score=56.69 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=26.8
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+..|.-+.|+||||||||||+.+|+-
T Consensus 21 ~i~l~i~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 21 DVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3557899999999999999999999986653
No 300
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.55 E-value=0.01 Score=54.19 Aligned_cols=31 Identities=32% Similarity=0.376 Sum_probs=27.6
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+++.+|++++|.|++|+|||||+..|+.
T Consensus 42 ~is~~i~~Ge~~~liG~NGsGKSTLlk~L~G 72 (264)
T PRK13546 42 DISLKAYEGDVIGLVGINGSGKSTLSNIIGG 72 (264)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 5556899999999999999999999987765
No 301
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=95.55 E-value=0.011 Score=53.18 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=26.1
Q ss_pred ccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 186 LAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 50 (255)
T PRK11231 22 SLSLPTGKITALIGPNGCGKSTLLKCFAR 50 (255)
T ss_pred eeEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 36788999999999999999999987765
No 302
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.55 E-value=0.01 Score=54.61 Aligned_cols=31 Identities=32% Similarity=0.521 Sum_probs=27.2
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+++-+|+.++|.|++|+|||||+..|+.
T Consensus 25 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~G 55 (287)
T PRK13637 25 NVNIEIEDGEFVGLIGHTGSGKSTLIQHLNG 55 (287)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3347899999999999999999999987764
No 303
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.55 E-value=0.01 Score=49.03 Aligned_cols=29 Identities=31% Similarity=0.582 Sum_probs=25.8
Q ss_pred cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+.+-+|+..+|.|++|+|||||+..|+..
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 56789999999999999999999877653
No 304
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.55 E-value=0.01 Score=54.18 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=27.4
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 20 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~G 50 (275)
T PRK13639 20 GINFKAEKGEMVALLGPNGAGKSTLFLHFNG 50 (275)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4447899999999999999999999987764
No 305
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.55 E-value=0.011 Score=54.52 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=26.9
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 57 ~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~G 87 (285)
T PRK14254 57 DVSMDIPENQVTAMIGPSGCGKSTFLRCINR 87 (285)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3346788999999999999999999987765
No 306
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=95.55 E-value=0.011 Score=53.72 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=27.8
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 31 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl 62 (267)
T PRK15112 31 PLSFTLREGQTLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred eeeEEecCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 45578899999999999999999999877653
No 307
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.53 E-value=0.011 Score=53.47 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=27.2
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 34 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 64 (265)
T PRK14252 34 NINMMVHEKQVTALIGPSGCGKSTFLRCFNR 64 (265)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 5556788999999999999999999987764
No 308
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=95.53 E-value=0.01 Score=56.83 Aligned_cols=31 Identities=23% Similarity=0.390 Sum_probs=27.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+-
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaG 51 (369)
T PRK11000 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAG 51 (369)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3447889999999999999999999987764
No 309
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=95.52 E-value=0.011 Score=58.01 Aligned_cols=47 Identities=30% Similarity=0.573 Sum_probs=37.2
Q ss_pred ceEeecc-cccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEe
Q psy17544 180 IKVVDLL-APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 228 (266)
Q Consensus 180 IraID~L-~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~al 228 (266)
++|+|.+ +++-+||.+||.|.||+|||||-..+.+=. ..+ +.+.|.+
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~-~s~-G~I~F~G 347 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI-PSQ-GEIRFDG 347 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc-CcC-ceEEECC
Confidence 5777765 789999999999999999999999888743 333 4565654
No 310
>PRK05748 replicative DNA helicase; Provisional
Probab=95.52 E-value=0.019 Score=56.20 Aligned_cols=63 Identities=17% Similarity=0.170 Sum_probs=47.6
Q ss_pred ccccccceEeecccc-cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHH
Q psy17544 174 EILVTGIKVVDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREG 236 (266)
Q Consensus 174 e~l~TGIraID~L~p-igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv 236 (266)
.-+.||+..+|-++. +-+|+=+.|=|.+|+|||+|+.+++.+.+..++.-++|.-.-+...++
T Consensus 184 ~gi~TG~~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l 247 (448)
T PRK05748 184 TGIPTGFTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESL 247 (448)
T ss_pred CCccCChHHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHH
Confidence 468999999999874 778999999999999999999999988664433334444444444443
No 311
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.52 E-value=0.011 Score=51.07 Aligned_cols=28 Identities=32% Similarity=0.425 Sum_probs=25.4
Q ss_pred cccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
+.+-+|+.++|.|++|+|||||+..|+-
T Consensus 28 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 28 GYVKPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 5788999999999999999999987763
No 312
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.01 Score=59.58 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=29.4
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
|.=+++..|+|+.|.|.+|+|||||++-+.+++
T Consensus 356 ~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~ 388 (573)
T COG4987 356 NFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW 388 (573)
T ss_pred ccceeecCCCeEEEECCCCCCHHHHHHHHHhcc
Confidence 344789999999999999999999999888866
No 313
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.51 E-value=0.011 Score=54.26 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=26.9
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 25 ~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G 55 (282)
T PRK13640 25 DISFSIPRGSWTALIGHNGSGKSTISKLING 55 (282)
T ss_pred eEEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3346788999999999999999999988765
No 314
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=95.51 E-value=0.012 Score=51.69 Aligned_cols=31 Identities=29% Similarity=0.339 Sum_probs=27.0
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+..+|.|++|+|||||+..|+.
T Consensus 23 ~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G 53 (220)
T TIGR02982 23 DINLEINPGEIVILTGPSGSGKTTLLTLIGG 53 (220)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3447788999999999999999999987764
No 315
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.51 E-value=0.011 Score=54.94 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=27.4
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 63 ~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~G 93 (305)
T PRK14264 63 GVSMDIPEKSVTALIGPSGCGKSTFLRCLNR 93 (305)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4457789999999999999999999988765
No 316
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.50 E-value=0.011 Score=54.16 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=27.7
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (279)
T PRK13650 25 DVSFHVKQGEWLSIIGHNGSGKSTTVRLIDG 55 (279)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhc
Confidence 5558899999999999999999999987765
No 317
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.49 E-value=0.011 Score=52.64 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=26.4
Q ss_pred ccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 186 LAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 21 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 21 NLEVRPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 367889999999999999999999877653
No 318
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.48 E-value=0.011 Score=52.10 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=24.0
Q ss_pred cccccCceeeeecCCCccHHHHHHHHH
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELI 213 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii 213 (266)
+-+-+|++++|+|+||+|||||++-++
T Consensus 31 L~v~~Ge~vaiVG~SGSGKSTLl~vlA 57 (228)
T COG4181 31 LVVKRGETVAIVGPSGSGKSTLLAVLA 57 (228)
T ss_pred EEecCCceEEEEcCCCCcHHhHHHHHh
Confidence 457899999999999999999997654
No 319
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=95.48 E-value=0.013 Score=55.55 Aligned_cols=31 Identities=32% Similarity=0.438 Sum_probs=28.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaG 45 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAG 45 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 6668899999999999999999999987765
No 320
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.47 E-value=0.011 Score=54.51 Aligned_cols=32 Identities=28% Similarity=0.529 Sum_probs=27.8
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+.+|++++|+|++|+|||||+..|+..
T Consensus 55 ~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 55 NINLKIEKGEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 55577899999999999999999999877653
No 321
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.47 E-value=0.012 Score=48.68 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=27.7
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+.+|+..+|.|++|+|||||+..|+..
T Consensus 17 ~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~ 48 (157)
T cd00267 17 NVSLTLKAGEIVALVGPNGSGKSTLLRAIAGL 48 (157)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45567889999999999999999999877653
No 322
>PRK05973 replicative DNA helicase; Provisional
Probab=95.47 E-value=0.046 Score=49.64 Aligned_cols=55 Identities=25% Similarity=0.297 Sum_probs=41.5
Q ss_pred cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcC
Q psy17544 189 YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESG 247 (266)
Q Consensus 189 igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~g 247 (266)
+-+|+=+.|.|.+|+|||+|+.+++.+.++ ++.-++|.-.=|..++ +++.+...|
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~-~Ge~vlyfSlEes~~~---i~~R~~s~g 115 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMK-SGRTGVFFTLEYTEQD---VRDRLRALG 115 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEEEeCCHHH---HHHHHHHcC
Confidence 678999999999999999999999987654 3556777766666544 444555555
No 323
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.45 E-value=0.011 Score=54.70 Aligned_cols=31 Identities=23% Similarity=0.431 Sum_probs=27.3
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|.|+.|+|||||+..|+.
T Consensus 20 ~is~~i~~Gei~~l~G~NGaGKTTLl~~l~G 50 (301)
T TIGR03522 20 EVSFEAQKGRIVGFLGPNGAGKSTTMKIITG 50 (301)
T ss_pred EeEEEEeCCeEEEEECCCCCCHHHHHHHHhC
Confidence 4447789999999999999999999997765
No 324
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=95.45 E-value=0.012 Score=53.53 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=26.9
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|.|++|+|||||+..|+-
T Consensus 43 ~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laG 73 (272)
T PRK14236 43 DISMRIPKNRVTAFIGPSGCGKSTLLRCFNR 73 (272)
T ss_pred eEEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3447788999999999999999999987764
No 325
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.44 E-value=0.012 Score=53.82 Aligned_cols=31 Identities=29% Similarity=0.568 Sum_probs=27.4
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|.|+||+|..|+|||||+..|+.
T Consensus 45 disf~i~~Ge~vGiiG~NGaGKSTLlkliaG 75 (249)
T COG1134 45 DISFEIYKGERVGIIGHNGAGKSTLLKLIAG 75 (249)
T ss_pred CceEEEeCCCEEEEECCCCCcHHHHHHHHhC
Confidence 5668899999999999999999999986653
No 326
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.43 E-value=0.012 Score=53.24 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=27.5
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 28 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~ 59 (257)
T PRK14246 28 DITIKIPNNSIFGIMGPSGSGKSTLLKVLNRL 59 (257)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44477899999999999999999999877653
No 327
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.40 E-value=0.012 Score=53.67 Aligned_cols=32 Identities=31% Similarity=0.483 Sum_probs=28.0
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+++-+|+.++|.|++|+|||||+..|+..
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (274)
T PRK13644 20 NINLVIKKGEYIGIIGKNGSGKSTLALHLNGL 51 (274)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44478999999999999999999999887753
No 328
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=95.40 E-value=0.011 Score=53.04 Aligned_cols=31 Identities=29% Similarity=0.450 Sum_probs=26.9
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 14 ~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~G 44 (248)
T PRK03695 14 PLSAEVRAGEILHLVGPNGAGKSTLLARMAG 44 (248)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 4446788999999999999999999987764
No 329
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.40 E-value=0.025 Score=53.54 Aligned_cols=63 Identities=25% Similarity=0.409 Sum_probs=43.5
Q ss_pred cceEee-cccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEe---ecCCchHHHHHHHH
Q psy17544 179 GIKVVD-LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG---VGERTREGNDLYHE 242 (266)
Q Consensus 179 GIraID-~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~al---IGER~rEv~ef~~~ 242 (266)
.+.++| .=+.+-+|+..||+|.||+|||||+. +++..-+-+.+-+.+.+ -.-...+.+.+.++
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR-~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~ 84 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLR-LINLLERPTSGSVFVDGQDLTALSEAELRQLRQK 84 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHH-HHhccCCCCCceEEEcCEecccCChHHHHHHHhh
Confidence 466776 77899999999999999999999997 55544333334444444 33455566665544
No 330
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.40 E-value=0.013 Score=54.05 Aligned_cols=29 Identities=28% Similarity=0.604 Sum_probs=26.8
Q ss_pred cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+.|-+|++++|+|++|+|||||+..|...
T Consensus 25 l~I~~Ge~~~IvG~nGsGKSTLl~~L~gl 53 (275)
T cd03289 25 FSISPGQRVGLLGRTGSGKSTLLSAFLRL 53 (275)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhh
Confidence 78999999999999999999999988764
No 331
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=95.40 E-value=0.012 Score=52.82 Aligned_cols=29 Identities=31% Similarity=0.439 Sum_probs=25.9
Q ss_pred ccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 186 LAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 49 (256)
T TIGR03873 21 DVTAPPGSLTGLLGPNGSGKSTLLRLLAG 49 (256)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 36788999999999999999999987765
No 332
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.39 E-value=0.012 Score=54.12 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=26.7
Q ss_pred ccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 186 LAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
=+.+-+|+.++|+|++|+|||||+..|...
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (290)
T PRK13634 27 NVSIPSGSYVAIIGHTGSGKSTLLQHLNGL 56 (290)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 378999999999999999999999877653
No 333
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.39 E-value=0.024 Score=54.89 Aligned_cols=44 Identities=34% Similarity=0.418 Sum_probs=39.8
Q ss_pred ccccccceEeeccc-ccccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544 174 EILVTGIKVVDLLA-PYAKGGKIGLFGGAGVGKTVLIMELINNVA 217 (266)
Q Consensus 174 e~l~TGIraID~L~-pigkGQr~gIfgg~G~GKT~L~~~ii~~~a 217 (266)
.-+.||+..+|-++ -+-+|+=+-|-|.+|+|||+++.+++.+.+
T Consensus 175 ~gi~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a 219 (421)
T TIGR03600 175 TGLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVA 219 (421)
T ss_pred cceeCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34799999999988 488999999999999999999999998876
No 334
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.38 E-value=0.014 Score=50.78 Aligned_cols=30 Identities=23% Similarity=0.459 Sum_probs=27.7
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+ +.++|.|++|+|||||+..|+.
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G 45 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAG 45 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhC
Confidence 88899999 9999999999999999987765
No 335
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.37 E-value=0.013 Score=53.70 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=27.0
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+++-+|+.++|.|++|+|||||+..|+.
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G 55 (279)
T PRK13635 25 DVSFSVYEGEWVAIVGHNGSGKSTLAKLLNG 55 (279)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3347888999999999999999999987765
No 336
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.36 E-value=0.018 Score=51.19 Aligned_cols=57 Identities=26% Similarity=0.463 Sum_probs=36.6
Q ss_pred ceeeeecCCCccHHHHHHHHHHHHHhcCCc-EEEEEeecC---------CchHHHHHHHHhHhcCcc
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINNVAKAHGG-YSVFAGVGE---------RTREGNDLYHEMIESGVI 249 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~~a~~~~~-v~V~alIGE---------R~rEv~ef~~~l~~~gvl 249 (266)
.-+-|+|++|+|||.|++.+++...+.+++ .++|.-.-+ +..+..+|.+.+.+..++
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL 101 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLL 101 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEE
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEE
Confidence 357899999999999999998865544444 344442211 224455666666666665
No 337
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.35 E-value=0.013 Score=52.84 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=27.7
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+|+.++|.|++|+|||||+..|+.-
T Consensus 25 ~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 56 (261)
T PRK14258 25 GVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRM 56 (261)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 44477899999999999999999999877753
No 338
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.35 E-value=0.0083 Score=54.70 Aligned_cols=45 Identities=33% Similarity=0.426 Sum_probs=37.1
Q ss_pred ccccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 172 EQEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 172 ~~e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
-...|.||++.+|.++- +-.|+=.=|+|++|+|||.|+.+++.+.
T Consensus 16 ~~~~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~ 62 (256)
T PF08423_consen 16 RWSRISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNV 62 (256)
T ss_dssp TS-EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCeeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHh
Confidence 34678999999999984 6788899999999999999999998764
No 339
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=95.34 E-value=0.013 Score=55.49 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=27.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 23 ~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~G 53 (343)
T PRK11153 23 NVSLHIPAGEIFGVIGASGAGKSTLIRCINL 53 (343)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4447889999999999999999999987765
No 340
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=95.30 E-value=0.013 Score=56.34 Aligned_cols=31 Identities=32% Similarity=0.513 Sum_probs=27.2
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+-
T Consensus 37 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaG 67 (377)
T PRK11607 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAG 67 (377)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3447888999999999999999999987764
No 341
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=95.30 E-value=0.014 Score=55.41 Aligned_cols=35 Identities=31% Similarity=0.468 Sum_probs=29.3
Q ss_pred eEe-ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 181 KVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 181 raI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.++ |.=+++.+|+.++|.|+.|+|||||+..|+..
T Consensus 55 ~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl 90 (340)
T PRK13536 55 AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM 90 (340)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 355 44478999999999999999999999988653
No 342
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.30 E-value=0.018 Score=44.74 Aligned_cols=22 Identities=50% Similarity=0.715 Sum_probs=20.0
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|++|+|||+|+..++..
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999988854
No 343
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.29 E-value=0.014 Score=54.84 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=25.9
Q ss_pred cccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
+.+.+|+.++|.|++|+|||||+..|..
T Consensus 47 l~i~~Ge~~~I~G~nGsGKSTLl~~L~G 74 (320)
T PRK13631 47 YTFEKNKIYFIIGNSGSGKSTLVTHFNG 74 (320)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 7889999999999999999999987765
No 344
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=95.29 E-value=0.014 Score=54.38 Aligned_cols=32 Identities=31% Similarity=0.442 Sum_probs=27.7
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+|+.++|.|+.|+|||||+..|+.-
T Consensus 25 ~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 25 GLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred cceEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 34478899999999999999999999988753
No 345
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=95.28 E-value=0.014 Score=55.88 Aligned_cols=31 Identities=32% Similarity=0.526 Sum_probs=27.2
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+..|+.++|+|++|+|||||+..|+-
T Consensus 23 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 53 (362)
T TIGR03258 23 DLSLEIEAGELLALIGKSGCGKTTLLRAIAG 53 (362)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4457788999999999999999999987764
No 346
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.28 E-value=0.014 Score=53.21 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=27.7
Q ss_pred Eeecc-cccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 182 VVDLL-APYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 182 aID~L-~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
+++-+ +.+-+|+.++|.|++|+|||||+..|+.
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~G 55 (277)
T PRK13642 22 QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDG 55 (277)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 44433 6788999999999999999999987764
No 347
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.28 E-value=0.014 Score=52.08 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=25.9
Q ss_pred cccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|++-+||.++|+|..|+|||||+.|++-
T Consensus 34 FtL~~~QTlaiIG~NGSGKSTLakMlaG 61 (267)
T COG4167 34 FTLREGQTLAIIGENGSGKSTLAKMLAG 61 (267)
T ss_pred EEecCCcEEEEEccCCCcHhHHHHHHhc
Confidence 6799999999999999999999998764
No 348
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.27 E-value=0.015 Score=58.26 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=27.6
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+||+++|.|++|+|||||+..|..-
T Consensus 361 ~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl 392 (582)
T PRK11176 361 NINFKIPAGKTVALVGRSGSGKSTIANLLTRF 392 (582)
T ss_pred CceEEeCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 44466889999999999999999999877764
No 349
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.26 E-value=0.026 Score=52.40 Aligned_cols=63 Identities=22% Similarity=0.300 Sum_probs=41.9
Q ss_pred cceEe-ecccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHH
Q psy17544 179 GIKVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHE 242 (266)
Q Consensus 179 GIraI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~ 242 (266)
+-+++ |.-+++-+|.=..++|+||+||||++.|| +..-+-+.+.+.|-+---+.-...++.+.
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMI-NrLiept~G~I~i~g~~i~~~d~~~LRr~ 76 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMI-NRLIEPTSGEILIDGEDISDLDPVELRRK 76 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHH-hcccCCCCceEEECCeecccCCHHHHHHh
Confidence 34555 55678999999999999999999999866 44444443455554444344335555544
No 350
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.23 E-value=0.015 Score=53.04 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=27.7
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 22 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl 53 (277)
T PRK13652 22 NINFIAPRNSRIAVIGPNGAGKSTLFRHFNGI 53 (277)
T ss_pred EeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34478899999999999999999999877653
No 351
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.22 E-value=0.013 Score=58.75 Aligned_cols=33 Identities=33% Similarity=0.501 Sum_probs=28.6
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
|.=+++-+|++++|.|++|+|||||+.-+.+..
T Consensus 368 ~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 368 PLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 334788999999999999999999999887754
No 352
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=95.21 E-value=0.014 Score=60.12 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=28.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+||+++|.|++|+|||||+..|..-
T Consensus 492 ~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl 523 (708)
T TIGR01193 492 DISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF 523 (708)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 44578999999999999999999999887764
No 353
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.18 E-value=0.015 Score=53.49 Aligned_cols=32 Identities=34% Similarity=0.486 Sum_probs=28.6
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+++-+|.-.+|+|+.|+|||||+..|++-
T Consensus 20 ~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 20 DLSFSIPKGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred cceEEecCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 45578999999999999999999999988774
No 354
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=95.18 E-value=0.016 Score=53.03 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=27.6
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+++.+|+.++|.|++|+|||||+..|+..
T Consensus 28 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 59 (280)
T PRK13633 28 DVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL 59 (280)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44467889999999999999999999888754
No 355
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.17 E-value=0.035 Score=43.77 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=31.7
Q ss_pred CceeeeecCCCccHHHHHHHHHHHHHhc-----CCcEEEEEeecCCchHHHHHHHHhH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGYSVFAGVGERTREGNDLYHEMI 244 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~~a~~-----~~~v~V~alIGER~rEv~ef~~~l~ 244 (266)
++-+-|.|++|+|||+++..+++..... + .-+++.-+.... ...+|++++-
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~i~ 59 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNH-PDVIYVNCPSSR-TPRDFAQEIL 59 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCC-EEEEEEEHHHHS-SHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCC-CcEEEEEeCCCC-CHHHHHHHHH
Confidence 3446789999999999999999865421 2 234455555444 5666666654
No 356
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=95.17 E-value=0.014 Score=59.68 Aligned_cols=31 Identities=39% Similarity=0.595 Sum_probs=27.5
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|++++|+|+.|+|||||+..|+.
T Consensus 19 ~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G 49 (638)
T PRK10636 19 NATATINPGQKVGLVGKNGCGKSTLLALLKN 49 (638)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4457899999999999999999999987765
No 357
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.17 E-value=0.015 Score=54.89 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=27.8
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+++-+|++++|.|++|+|||||+..|...
T Consensus 100 ~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~ 131 (329)
T PRK14257 100 DLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQL 131 (329)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 44467889999999999999999999988764
No 358
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=95.16 E-value=0.015 Score=55.74 Aligned_cols=32 Identities=28% Similarity=0.274 Sum_probs=28.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+.+|+.++|+|++|+|||||+..|...
T Consensus 11 ~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl 42 (363)
T TIGR01186 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRL 42 (363)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 45578999999999999999999999987764
No 359
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.16 E-value=0.014 Score=58.64 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=28.3
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+++-+||+++|.|++|+|||||+.-|..-
T Consensus 359 ~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl 390 (592)
T PRK10790 359 NINLSVPSRGFVALVGHTGSGKSTLASLLMGY 390 (592)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 55578999999999999999999999887664
No 360
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=95.16 E-value=0.015 Score=57.59 Aligned_cols=32 Identities=28% Similarity=0.529 Sum_probs=28.0
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+|++++|+|++|+|||||+..|+..
T Consensus 18 ~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 49 (520)
T TIGR03269 18 NISFTIEEGEVLGILGRSGAGKSVLMHVLRGM 49 (520)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 45568999999999999999999999987764
No 361
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.16 E-value=0.019 Score=44.88 Aligned_cols=21 Identities=43% Similarity=0.627 Sum_probs=19.1
Q ss_pred eeeecCCCccHHHHHHHHHHH
Q psy17544 195 IGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 195 ~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+|.|.+|+|||||+..+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999998875
No 362
>PLN03073 ABC transporter F family; Provisional
Probab=95.14 E-value=0.014 Score=60.80 Aligned_cols=31 Identities=32% Similarity=0.445 Sum_probs=28.0
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=++|..|+|+||+|++|+|||||+..|+.
T Consensus 195 ~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g 225 (718)
T PLN03073 195 DASVTLAFGRHYGLVGRNGTGKTTFLRYMAM 225 (718)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 5678899999999999999999999987763
No 363
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.10 E-value=0.024 Score=50.76 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=25.6
Q ss_pred CceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEee
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 229 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alI 229 (266)
+..+-|+|++|+|||+|+..+++.. ...+..++|.-.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~-~~~~~~v~y~~~ 81 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAEL-SQRGRAVGYVPL 81 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-HhCCCeEEEEEH
Confidence 4578899999999999999887753 322223445433
No 364
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=95.07 E-value=0.02 Score=56.64 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=28.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
|.=+.+.+|++++|.|++|+|||||+..+....
T Consensus 340 ~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 340 PVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344678899999999999999999998887643
No 365
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=95.07 E-value=0.015 Score=59.83 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=28.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
|.=+.+-+|++++|.|++|+|||||+..|....
T Consensus 497 ~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 497 NFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344678899999999999999999998877643
No 366
>PF13245 AAA_19: Part of AAA domain
Probab=95.06 E-value=0.033 Score=41.68 Aligned_cols=51 Identities=22% Similarity=0.331 Sum_probs=31.6
Q ss_pred Cceee-eecCCCccHHHHHHHHHHHHHhc--CCcEEEEEeecCCchHHHHHHHHh
Q psy17544 192 GGKIG-LFGGAGVGKTVLIMELINNVAKA--HGGYSVFAGVGERTREGNDLYHEM 243 (266)
Q Consensus 192 GQr~g-Ifgg~G~GKT~L~~~ii~~~a~~--~~~v~V~alIGER~rEv~ef~~~l 243 (266)
++++. |-|++|+|||+++..++...... ++.-.|. .+--+.+-+.++.+.+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vl-v~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVL-VLAPTRAAADELRERL 62 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEE-EECCCHHHHHHHHHHH
Confidence 44444 59999999998887777766532 1111222 2244566677777777
No 367
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=95.05 E-value=0.016 Score=59.23 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=27.2
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|++++|+|++|+|||||+..|+.
T Consensus 21 ~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG 51 (635)
T PRK11147 21 NAELHIEDNERVCLVGRNGAGKSTLMKILNG 51 (635)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 4557899999999999999999999987765
No 368
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.04 E-value=0.019 Score=50.96 Aligned_cols=29 Identities=21% Similarity=0.446 Sum_probs=24.3
Q ss_pred cccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
+++-.|+++.|.|+||+|||||+.-| .+.
T Consensus 20 l~v~~ge~vAi~GpSGaGKSTLLnLI-AGF 48 (231)
T COG3840 20 LTVPAGEIVAILGPSGAGKSTLLNLI-AGF 48 (231)
T ss_pred EeecCCcEEEEECCCCccHHHHHHHH-Hhc
Confidence 45779999999999999999999744 444
No 369
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.04 E-value=0.02 Score=49.94 Aligned_cols=25 Identities=40% Similarity=0.638 Sum_probs=22.5
Q ss_pred cCceeeeecCCCccHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+|..++|.|++|+|||||+..|...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999988764
No 370
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.03 E-value=0.022 Score=49.07 Aligned_cols=26 Identities=35% Similarity=0.538 Sum_probs=23.5
Q ss_pred ccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
-+|+-+.|.|++|+|||||+..++..
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999999988774
No 371
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=95.01 E-value=0.017 Score=57.08 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=27.6
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 22 ~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~ 53 (501)
T PRK10762 22 GAALNVYPGRVMALVGENGAGKSTMMKVLTGI 53 (501)
T ss_pred eeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 44568999999999999999999999877653
No 372
>PRK08727 hypothetical protein; Validated
Probab=95.01 E-value=0.044 Score=49.02 Aligned_cols=57 Identities=21% Similarity=0.255 Sum_probs=39.9
Q ss_pred ceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccc
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVIS 250 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~ 250 (266)
+-+.|.|++|+|||.|+..+++.. ...+-.++|.-..+..+...++++.+....++=
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~-~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLi 98 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAA-EQAGRSSAYLPLQAAAGRLRDALEALEGRSLVA 98 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEE
Confidence 348999999999999999887753 333334566666666666666666666666553
No 373
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=95.01 E-value=0.018 Score=57.31 Aligned_cols=33 Identities=24% Similarity=0.555 Sum_probs=28.1
Q ss_pred Eee-cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 182 VVD-LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 182 aID-~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
++| .=+.+-+|++++|.|++|+|||||+..|+.
T Consensus 16 il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G 49 (530)
T PRK15064 16 LFENISVKFGGGNRYGLIGANGCGKSTFMKILGG 49 (530)
T ss_pred eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 443 446899999999999999999999987765
No 374
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.99 E-value=0.02 Score=52.54 Aligned_cols=31 Identities=29% Similarity=0.501 Sum_probs=27.3
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 24 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~G 54 (283)
T PRK13636 24 GININIKKGEVTAILGGNGAGKSTLFQNLNG 54 (283)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4457888999999999999999999987765
No 375
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.97 E-value=0.066 Score=41.49 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=22.7
Q ss_pred cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
.+.-+.|.|++|+|||+|+..+++..
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998864
No 376
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=94.97 E-value=0.026 Score=56.88 Aligned_cols=48 Identities=31% Similarity=0.497 Sum_probs=37.5
Q ss_pred ceEeec-ccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEe
Q psy17544 180 IKVVDL-LAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 228 (266)
Q Consensus 180 IraID~-L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~al 228 (266)
++|+|. =|.+-+|+.+||+|.||+|||||+..|+. ....+++.++|.+
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~g-L~~P~~G~i~~~g 352 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAG-LLPPSSGSIIFDG 352 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhC-CCCCCCceEEEeC
Confidence 577754 47899999999999999999999987776 3344445666655
No 377
>PHA02542 41 41 helicase; Provisional
Probab=94.96 E-value=0.031 Score=55.51 Aligned_cols=46 Identities=13% Similarity=0.214 Sum_probs=40.6
Q ss_pred cccccccceEeeccc--ccccCceeeeecCCCccHHHHHHHHHHHHHh
Q psy17544 173 QEILVTGIKVVDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINNVAK 218 (266)
Q Consensus 173 ~e~l~TGIraID~L~--pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~ 218 (266)
..-+.||+..+|-++ -+-+|+=+.|-|.+|+|||+++.+++.+.++
T Consensus 169 ~~gi~TG~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~ 216 (473)
T PHA02542 169 ANKIPFKLEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQ 216 (473)
T ss_pred CCccCCCcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHh
Confidence 355789999999998 4889999999999999999999999998764
No 378
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=94.94 E-value=0.023 Score=56.74 Aligned_cols=32 Identities=31% Similarity=0.430 Sum_probs=27.4
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+||+++|.|++|+|||||+.-+..-
T Consensus 341 ~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~ 372 (547)
T PRK10522 341 PINLTIKRGELLFLIGGNGSGKSTLAMLLTGL 372 (547)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44467889999999999999999999877753
No 379
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=94.93 E-value=0.019 Score=57.64 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=28.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
|.=+.+-+|++++|.|++|+|||||+..|....
T Consensus 333 ~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~ 365 (569)
T PRK10789 333 NVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF 365 (569)
T ss_pred CeeEEECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 344678899999999999999999998887643
No 380
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=94.92 E-value=0.017 Score=59.16 Aligned_cols=33 Identities=24% Similarity=0.387 Sum_probs=28.5
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
|.=+.+-+|++++|.|++|+|||||+..+..-.
T Consensus 471 ~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 471 DVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444788999999999999999999999887643
No 381
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=94.92 E-value=0.022 Score=56.88 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=28.3
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
|.=+++-+|++++|.|++|+|||||+.-|..-.
T Consensus 358 ~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 358 GLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred ceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 334789999999999999999999998877643
No 382
>PF05729 NACHT: NACHT domain
Probab=94.92 E-value=0.047 Score=44.29 Aligned_cols=42 Identities=21% Similarity=0.394 Sum_probs=30.2
Q ss_pred eeeeecCCCccHHHHHHHHHHHHHhcCC-----cEEEEEeecCCchH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINNVAKAHG-----GYSVFAGVGERTRE 235 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~~a~~~~-----~v~V~alIGER~rE 235 (266)
-+.|.|++|+|||+++..++..+...+. .+++|.-.++....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDS 48 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhc
Confidence 3678999999999999999988765432 24555555555543
No 383
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=94.91 E-value=0.018 Score=59.19 Aligned_cols=32 Identities=25% Similarity=0.457 Sum_probs=27.9
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+|++++|.|++|+|||||+..|..-
T Consensus 483 ~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl 514 (694)
T TIGR03375 483 NVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL 514 (694)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44577889999999999999999999887764
No 384
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=94.91 E-value=0.02 Score=56.31 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=28.1
Q ss_pred Eeec-ccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 182 VVDL-LAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 182 aID~-L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
++|- =+++-+|+.++|.|++|+|||||+..|+.
T Consensus 18 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G 51 (490)
T PRK10938 18 TLQLPSLTLNAGDSWAFVGANGSGKSALARALAG 51 (490)
T ss_pred ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4433 47899999999999999999999987765
No 385
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.89 E-value=0.022 Score=47.97 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=21.2
Q ss_pred CceeeeecCCCccHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|+.+.|.|++|+|||||+..|++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHc
Confidence 67899999999999999998876
No 386
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.88 E-value=0.026 Score=56.78 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=28.4
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
|.=+++-+|++++|.|++|+|||||+.-+....
T Consensus 358 ~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 358 GLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344778899999999999999999999887753
No 387
>PRK08233 hypothetical protein; Provisional
Probab=94.87 E-value=0.026 Score=47.18 Aligned_cols=26 Identities=31% Similarity=0.325 Sum_probs=22.1
Q ss_pred cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
++.-++|.|++|+|||||+..++...
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhC
Confidence 35678999999999999999998753
No 388
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=94.87 E-value=0.02 Score=57.38 Aligned_cols=34 Identities=26% Similarity=0.573 Sum_probs=28.7
Q ss_pred eEee-cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 181 KVVD-LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 181 raID-~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.+++ .=+++-.|++++|.|++|+|||||+..|+.
T Consensus 21 ~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G 55 (556)
T PRK11819 21 QILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG 55 (556)
T ss_pred eeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3453 447899999999999999999999987765
No 389
>PF12846 AAA_10: AAA-like domain
Probab=94.84 E-value=0.065 Score=47.78 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=32.3
Q ss_pred eeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHH
Q psy17544 195 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHE 242 (266)
Q Consensus 195 ~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~ 242 (266)
+.|+|.+|+|||+++..++.........++|| ....|...+.+.
T Consensus 4 ~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~----D~~g~~~~~~~~ 47 (304)
T PF12846_consen 4 TLILGKTGSGKTTLLKNLLEQLIRRGPRVVIF----DPKGDYSPLARA 47 (304)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCCEEEE----cCCchHHHHHHh
Confidence 67999999999999999988665443224444 666777776655
No 390
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=94.84 E-value=0.021 Score=55.50 Aligned_cols=31 Identities=29% Similarity=0.479 Sum_probs=27.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|..
T Consensus 21 ~vs~~i~~Geiv~liGpNGaGKSTLLk~LaG 51 (402)
T PRK09536 21 GVDLSVREGSLVGLVGPNGAGKTTLLRAING 51 (402)
T ss_pred eeEEEECCCCEEEEECCCCchHHHHHHHHhc
Confidence 3346788999999999999999999998865
No 391
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=94.83 E-value=0.02 Score=56.43 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=27.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 19 ~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G 49 (500)
T TIGR02633 19 GIDLEVRPGECVGLCGENGAGKSTLMKILSG 49 (500)
T ss_pred ceEEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3457899999999999999999999987764
No 392
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=94.82 E-value=0.021 Score=56.79 Aligned_cols=32 Identities=25% Similarity=0.482 Sum_probs=27.7
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 27 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~ 58 (529)
T PRK15134 27 DVSLQIEAGETLALVGESGSGKSVTALSILRL 58 (529)
T ss_pred ceEEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 44577889999999999999999999877653
No 393
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.80 E-value=0.024 Score=49.28 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=22.9
Q ss_pred cccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 189 YAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 189 igkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
...+.-+.|.|++|+|||+|+..+++.
T Consensus 35 ~~~~~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 345677889999999999999988875
No 394
>PRK08506 replicative DNA helicase; Provisional
Probab=94.79 E-value=0.037 Score=54.85 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=38.8
Q ss_pred cccccceEeeccc-ccccCceeeeecCCCccHHHHHHHHHHHHHh
Q psy17544 175 ILVTGIKVVDLLA-PYAKGGKIGLFGGAGVGKTVLIMELINNVAK 218 (266)
Q Consensus 175 ~l~TGIraID~L~-pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~ 218 (266)
-+.||+..+|-++ -+-+|+=+.|-|.+|+|||+|+.+++.+.++
T Consensus 174 Gi~TG~~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~ 218 (472)
T PRK08506 174 GLDTGFVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALN 218 (472)
T ss_pred cccCChHHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHh
Confidence 4889999999986 3778999999999999999999999998654
No 395
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.78 E-value=0.027 Score=50.65 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=26.7
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.-+.|..|+-+-+.|+||||||||+.-++-
T Consensus 23 ~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 23 DVSLTIASGELVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred ccceeecCCCEEEEEcCCCccHHHHHHHHhc
Confidence 5567899999999999999999999975543
No 396
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=94.77 E-value=0.025 Score=56.32 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=27.6
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+|++++|.|++|+|||||+.-|..-
T Consensus 350 ~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl 381 (571)
T TIGR02203 350 SISLVIEPGETVALVGRSGSGKSTLVNLIPRF 381 (571)
T ss_pred CeeEEecCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 44567889999999999999999999877664
No 397
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=94.76 E-value=0.02 Score=57.07 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=28.6
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
|.=+.+-+|++++|+|++|+|||||+..++...
T Consensus 336 ~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 368 (544)
T TIGR01842 336 GISFRLQAGEALAIIGPSGSGKSTLARLIVGIW 368 (544)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455778899999999999999999998887643
No 398
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=94.75 E-value=0.023 Score=56.58 Aligned_cols=31 Identities=32% Similarity=0.594 Sum_probs=27.4
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|++++|+|++|+|||||+..|+-
T Consensus 337 ~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G 367 (530)
T PRK15064 337 NLNLLLEAGERLAIIGENGVGKTTLLRTLVG 367 (530)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4557899999999999999999999987764
No 399
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=94.73 E-value=0.023 Score=57.89 Aligned_cols=35 Identities=26% Similarity=0.492 Sum_probs=29.8
Q ss_pred eEe-ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 181 KVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 181 raI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.++ |.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 30 ~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gl 65 (623)
T PRK10261 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRL 65 (623)
T ss_pred eEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 455 45678999999999999999999999988754
No 400
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.71 E-value=0.024 Score=56.75 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=28.0
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
.=+.+-+|++++|.|++|+|||||+.-+.+-.
T Consensus 348 is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~ 379 (567)
T COG1132 348 ISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLY 379 (567)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44558999999999999999999999888754
No 401
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=94.70 E-value=0.022 Score=56.35 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=26.8
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 24 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (506)
T PRK13549 24 VSLKVRAGEIVSLCGENGAGKSTLMKVLSG 53 (506)
T ss_pred eeEEEeCCeEEEEECCCCCCHHHHHHHHhC
Confidence 457789999999999999999999987765
No 402
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.70 E-value=0.082 Score=45.58 Aligned_cols=49 Identities=29% Similarity=0.501 Sum_probs=31.1
Q ss_pred cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHh
Q psy17544 189 YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIE 245 (266)
Q Consensus 189 igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~ 245 (266)
+.+|+-+.|+|++|+|||.|+..+++.... .+--+.|.- +.++++++..
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~~v~f~~-------~~~L~~~l~~ 92 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIR-KGYSVLFIT-------ASDLLDELKQ 92 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEE-------HHHHHHHHHC
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhcc-CCcceeEee-------cCceeccccc
Confidence 347888999999999999999999886543 333344432 3455555543
No 403
>PRK09165 replicative DNA helicase; Provisional
Probab=94.70 E-value=0.051 Score=54.26 Aligned_cols=46 Identities=30% Similarity=0.302 Sum_probs=40.4
Q ss_pred ccccccceEeeccc-ccccCceeeeecCCCccHHHHHHHHHHHHHhc
Q psy17544 174 EILVTGIKVVDLLA-PYAKGGKIGLFGGAGVGKTVLIMELINNVAKA 219 (266)
Q Consensus 174 e~l~TGIraID~L~-pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~ 219 (266)
.-+.||+..+|-++ -+.+|+=+.|-|.+|+|||+|+.+++.|.+..
T Consensus 198 ~gi~TG~~~LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~ 244 (497)
T PRK09165 198 SGISTGLRDLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKA 244 (497)
T ss_pred CcccCChHHHhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHh
Confidence 45789999999987 58899999999999999999999999887643
No 404
>PRK05595 replicative DNA helicase; Provisional
Probab=94.69 E-value=0.047 Score=53.44 Aligned_cols=47 Identities=19% Similarity=0.325 Sum_probs=39.6
Q ss_pred ccccccceEeecccc-cccCceeeeecCCCccHHHHHHHHHHHHHhcC
Q psy17544 174 EILVTGIKVVDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 220 (266)
Q Consensus 174 e~l~TGIraID~L~p-igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~ 220 (266)
.-+.||+..+|-++- +.+|+=+.|=|.+|+|||+++.+++.+.+..+
T Consensus 182 ~gi~tg~~~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~ 229 (444)
T PRK05595 182 TGVASGFRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALRE 229 (444)
T ss_pred CcccCChHHHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHc
Confidence 357899999999864 77888888999999999999999998765443
No 405
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.68 E-value=0.029 Score=48.58 Aligned_cols=54 Identities=28% Similarity=0.437 Sum_probs=33.7
Q ss_pred eeeeecCCCccHHHHHHHHHHHHHhcC--CcEEEEEeecCCchHHHHHHHHhHhcCc
Q psy17544 194 KIGLFGGAGVGKTVLIMELINNVAKAH--GGYSVFAGVGERTREGNDLYHEMIESGV 248 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~~a~~~--~~v~V~alIGER~rEv~ef~~~l~~~gv 248 (266)
|+.|+|+||+||||++..|++..---| -+...-+.+-++ .|.....+.+.+.|-
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~-t~lg~~~k~~i~~g~ 57 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAER-TELGEEIKKYIDKGE 57 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccC-ChHHHHHHHHHHcCC
Confidence 789999999999999999987521111 012223444444 566666666554443
No 406
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=94.68 E-value=0.023 Score=56.19 Aligned_cols=30 Identities=27% Similarity=0.426 Sum_probs=26.9
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 282 isl~i~~Ge~~~l~G~NGsGKSTLlk~i~G 311 (510)
T PRK09700 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFG 311 (510)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 456789999999999999999999998775
No 407
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.68 E-value=0.028 Score=48.18 Aligned_cols=24 Identities=38% Similarity=0.508 Sum_probs=21.5
Q ss_pred cCceeeeecCCCccHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.|+.+.|.|++|+|||||+..|+.
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 478899999999999999998865
No 408
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.67 E-value=0.053 Score=50.09 Aligned_cols=45 Identities=31% Similarity=0.468 Sum_probs=30.8
Q ss_pred eecccc-cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEE
Q psy17544 183 VDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 227 (266)
Q Consensus 183 ID~L~p-igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~a 227 (266)
++.+.| .|+..++||-|++|+|||||+..+++...+...-+-|++
T Consensus 19 l~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlA 64 (266)
T PF03308_consen 19 LKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLA 64 (266)
T ss_dssp HHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred HHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEE
Confidence 334444 478889999999999999999999988765322255543
No 409
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=94.65 E-value=0.024 Score=58.01 Aligned_cols=31 Identities=35% Similarity=0.598 Sum_probs=27.3
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|++++|.|+.|+|||||+..|+.
T Consensus 330 ~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G 360 (638)
T PRK10636 330 SIKLNLVPGSRIGLLGRNGAGKSTLIKLLAG 360 (638)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456889999999999999999999997775
No 410
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.65 E-value=0.024 Score=58.99 Aligned_cols=32 Identities=31% Similarity=0.520 Sum_probs=27.6
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.|-.||+++|+|.+|+|||||+..+..-
T Consensus 491 ~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 491 DLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred ceeEEeCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34467999999999999999999999987653
No 411
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.64 E-value=0.033 Score=46.99 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=21.3
Q ss_pred CceeeeecCCCccHHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.+.|.|++|+|||||+..|+..
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999999988775
No 412
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=94.64 E-value=0.025 Score=54.98 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=27.5
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+.+|+.++|+|++|+|||||+..|..-
T Consensus 46 ~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl 77 (400)
T PRK10070 46 DASLAIEEGEIFVIMGLSGSGKSTMVRLLNRL 77 (400)
T ss_pred eEEEEEcCCCEEEEECCCCchHHHHHHHHHcC
Confidence 44567889999999999999999999877653
No 413
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.64 E-value=0.03 Score=53.11 Aligned_cols=77 Identities=23% Similarity=0.400 Sum_probs=50.8
Q ss_pred cccccccceEeeccccc---ccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEE----------------------
Q psy17544 173 QEILVTGIKVVDLLAPY---AKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA---------------------- 227 (266)
Q Consensus 173 ~e~l~TGIraID~L~pi---gkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~a---------------------- 227 (266)
.+.+.||+.++|..++. -+|.=+=|+|++++|||+|+..++++..+. +..++|.
T Consensus 31 ~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~-g~~~a~ID~e~~ld~~~a~~lGvdl~rll 109 (322)
T PF00154_consen 31 IEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQ-GGICAFIDAEHALDPEYAESLGVDLDRLL 109 (322)
T ss_dssp S-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-T-EEEEEESSS---HHHHHHTT--GGGEE
T ss_pred cceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcc-cceeEEecCcccchhhHHHhcCccccceE
Confidence 36789999999999983 478888999999999999999888865433 2222222
Q ss_pred -eecCCchHHHHHHHHhHhcCccc
Q psy17544 228 -GVGERTREGNDLYHEMIESGVIS 250 (266)
Q Consensus 228 -lIGER~rEv~ef~~~l~~~gvl~ 250 (266)
.--..+++.-+..+.+.++|..+
T Consensus 110 v~~P~~~E~al~~~e~lirsg~~~ 133 (322)
T PF00154_consen 110 VVQPDTGEQALWIAEQLIRSGAVD 133 (322)
T ss_dssp EEE-SSHHHHHHHHHHHHHTTSES
T ss_pred EecCCcHHHHHHHHHHHhhccccc
Confidence 11234566667777777777654
No 414
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.61 E-value=0.052 Score=48.33 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.4
Q ss_pred eeeecCCCccHHHHHHHHHHHH
Q psy17544 195 IGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 195 ~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
+||-|++|+|||||+..|....
T Consensus 2 igI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999887654
No 415
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=94.61 E-value=0.024 Score=56.05 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=27.5
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 23 ~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~G 53 (510)
T PRK09700 23 SVNLTVYPGEIHALLGENGAGKSTLMKVLSG 53 (510)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 5567889999999999999999999987765
No 416
>PRK06217 hypothetical protein; Validated
Probab=94.60 E-value=0.032 Score=47.68 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=21.0
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+||.|+|.+|+|||||+..++..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999875
No 417
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=94.60 E-value=0.024 Score=55.82 Aligned_cols=34 Identities=32% Similarity=0.513 Sum_probs=28.8
Q ss_pred eEe-ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 181 KVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 181 raI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
+++ |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 274 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G 308 (500)
T TIGR02633 274 KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFG 308 (500)
T ss_pred cccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhC
Confidence 345 3456899999999999999999999998875
No 418
>PRK08760 replicative DNA helicase; Provisional
Probab=94.60 E-value=0.047 Score=54.20 Aligned_cols=45 Identities=22% Similarity=0.204 Sum_probs=39.5
Q ss_pred cccccceEeeccc-ccccCceeeeecCCCccHHHHHHHHHHHHHhc
Q psy17544 175 ILVTGIKVVDLLA-PYAKGGKIGLFGGAGVGKTVLIMELINNVAKA 219 (266)
Q Consensus 175 ~l~TGIraID~L~-pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~ 219 (266)
-+.||+..+|-++ -+-+|+=+-|-|.+|+|||+|+.+++.+.+..
T Consensus 211 Gi~TG~~~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~ 256 (476)
T PRK08760 211 GLPTGYNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIK 256 (476)
T ss_pred cccCCcHHHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHh
Confidence 4789999999986 47889999999999999999999999987643
No 419
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.59 E-value=0.033 Score=48.37 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=23.9
Q ss_pred ccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
.++..++|.|++|+|||||+..|....
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999999999999999888754
No 420
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.59 E-value=0.031 Score=43.71 Aligned_cols=21 Identities=33% Similarity=0.646 Sum_probs=19.6
Q ss_pred eeeeecCCCccHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~ 214 (266)
|++|+|.+|+|||||+..+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999998885
No 421
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.58 E-value=0.03 Score=48.50 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=27.8
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
.-+||.+|.-+-|.||+|+|||||+.-|+-..
T Consensus 21 ~n~Tia~GeivtlMGPSGcGKSTLls~~~G~L 52 (213)
T COG4136 21 VNFTIAKGEIVTLMGPSGCGKSTLLSWMIGAL 52 (213)
T ss_pred eeEEecCCcEEEEECCCCccHHHHHHHHHhhc
Confidence 45789999999999999999999998776543
No 422
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=94.58 E-value=0.021 Score=57.21 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=27.7
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
.=+.+-+|++++|+|++|+|||||+..|.+..
T Consensus 361 vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 392 (555)
T TIGR01194 361 IDLRIAQGDIVFIVGENGCGKSTLAKLFCGLY 392 (555)
T ss_pred ceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678899999999999999999999887643
No 423
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=94.57 E-value=0.028 Score=58.09 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=28.7
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
|.=+.+-+||+++|.|++|+|||||+.-|.+-.
T Consensus 499 ~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~ 531 (711)
T TIGR00958 499 GLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY 531 (711)
T ss_pred CceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 555789999999999999999999998777643
No 424
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.57 E-value=0.028 Score=50.92 Aligned_cols=30 Identities=33% Similarity=0.476 Sum_probs=26.9
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELI 213 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii 213 (266)
|.-+.+.+|++++|+|++|+|||||+..+.
T Consensus 22 ~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~ 51 (235)
T COG1122 22 DVSLEIEKGERVLLIGPNGSGKSTLLKLLN 51 (235)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHc
Confidence 667789999999999999999999998653
No 425
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=94.56 E-value=0.027 Score=56.39 Aligned_cols=31 Identities=32% Similarity=0.605 Sum_probs=27.4
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|++++|.|++|+|||||+..|+.
T Consensus 23 ~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G 53 (552)
T TIGR03719 23 DISLSFFPGAKIGVLGLNGAGKSTLLRIMAG 53 (552)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4447899999999999999999999987764
No 426
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.51 E-value=0.038 Score=43.28 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=19.4
Q ss_pred eeeecCCCccHHHHHHHHHHHH
Q psy17544 195 IGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 195 ~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
+.|.|++|+|||+++..+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5789999999999999998853
No 427
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=94.50 E-value=0.027 Score=55.47 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=27.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 16 ~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~G 46 (491)
T PRK10982 16 NVNLKVRPHSIHALMGENGAGKSTLLKCLFG 46 (491)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 3456788999999999999999999987765
No 428
>PTZ00243 ABC transporter; Provisional
Probab=94.49 E-value=0.032 Score=62.65 Aligned_cols=45 Identities=27% Similarity=0.456 Sum_probs=33.5
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEee
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 229 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alI 229 (266)
|.=+.+.+|||++|.|.+|+|||||+..+.+-. +.+.+-+.+-++
T Consensus 1328 ~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~-~p~~G~I~IDG~ 1372 (1560)
T PTZ00243 1328 GVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMV-EVCGGEIRVNGR 1372 (1560)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCE
Confidence 445789999999999999999999999887743 333344444433
No 429
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.48 E-value=0.03 Score=56.47 Aligned_cols=31 Identities=32% Similarity=0.567 Sum_probs=28.2
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.-+.+-.|+|+||+|..|+|||||+..|+.
T Consensus 21 ~~~l~~~~G~riGLvG~NGaGKSTLLkilaG 51 (530)
T COG0488 21 NVSLTLNPGERIGLVGRNGAGKSTLLKILAG 51 (530)
T ss_pred CCcceeCCCCEEEEECCCCCCHHHHHHHHcC
Confidence 6778899999999999999999999986664
No 430
>PRK14531 adenylate kinase; Provisional
Probab=94.47 E-value=0.038 Score=47.26 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=21.6
Q ss_pred ceeeeecCCCccHHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
+|+.|+|++|+||||+...++...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999887754
No 431
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=94.46 E-value=0.028 Score=57.40 Aligned_cols=30 Identities=37% Similarity=0.613 Sum_probs=26.7
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=+.+-+|++++|.|+.|+|||||+..|+.
T Consensus 338 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G 367 (635)
T PRK11147 338 FSAQVQRGDKIALIGPNGCGKTTLLKLMLG 367 (635)
T ss_pred cEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 446889999999999999999999987765
No 432
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=94.44 E-value=0.031 Score=54.09 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=29.0
Q ss_pred eecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 183 ID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
-|.=+.+-+|+..+|+|++|+|||||+..|...
T Consensus 41 ~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl 73 (382)
T TIGR03415 41 ANASLDIEEGEICVLMGLSGSGKSSLLRAVNGL 73 (382)
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 466688999999999999999999999877653
No 433
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=94.43 E-value=0.027 Score=56.90 Aligned_cols=32 Identities=31% Similarity=0.403 Sum_probs=27.4
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+|++++|.|++|+|||||+..|...
T Consensus 353 ~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~ 384 (585)
T TIGR01192 353 DVSFEAKAGQTVAIVGPTGAGKTTLINLLQRV 384 (585)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHccC
Confidence 34466889999999999999999999887764
No 434
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=94.43 E-value=0.031 Score=55.45 Aligned_cols=34 Identities=32% Similarity=0.485 Sum_probs=28.7
Q ss_pred eEee-cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 181 KVVD-LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 181 raID-~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.+++ .=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 298 ~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G 332 (520)
T TIGR03269 298 KAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAG 332 (520)
T ss_pred eEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3453 456899999999999999999999987765
No 435
>PRK09183 transposase/IS protein; Provisional
Probab=94.42 E-value=0.048 Score=49.79 Aligned_cols=33 Identities=33% Similarity=0.414 Sum_probs=27.0
Q ss_pred eecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 183 ID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
++.+.-+.+|+.+.|+|++|+|||+|+..+++.
T Consensus 93 L~~~~~i~~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 93 LRSLSFIERNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred HhcCCchhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 333333788999999999999999999988764
No 436
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=94.41 E-value=0.03 Score=55.51 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=27.0
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 29 ~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G 59 (510)
T PRK15439 29 GIDFTLHAGEVHALLGGNGAGKSTLMKIIAG 59 (510)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4456788999999999999999999987764
No 437
>PRK06893 DNA replication initiation factor; Validated
Probab=94.41 E-value=0.057 Score=48.09 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.0
Q ss_pred eeeeecCCCccHHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
.+.|+|++|+|||+|+..+++..
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999888754
No 438
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=94.39 E-value=0.033 Score=51.77 Aligned_cols=36 Identities=28% Similarity=0.367 Sum_probs=29.8
Q ss_pred ceEe-ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 180 IKVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 180 IraI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
..++ |.=+.+.+|+-.|+.|+.|+|||||+.+|+-.
T Consensus 18 ~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 18 KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4455 34478999999999999999999999988764
No 439
>PRK14530 adenylate kinase; Provisional
Probab=94.38 E-value=0.043 Score=48.09 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=22.5
Q ss_pred cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
.|-++.|+|++|+||||++..++...
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998754
No 440
>PRK05642 DNA replication initiation factor; Validated
Probab=94.37 E-value=0.067 Score=47.89 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=32.3
Q ss_pred eeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCcc
Q psy17544 194 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVI 249 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl 249 (266)
-+-|.|++|+|||.|++.+++.. ...+.-++|.-..+=.....+|++.+.+..++
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~-~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~L 101 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRF-EQRGEPAVYLPLAELLDRGPELLDNLEQYELV 101 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH-HhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEE
Confidence 35788999999999998887643 22222455544433222334455555544443
No 441
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.36 E-value=0.078 Score=49.23 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=26.9
Q ss_pred cccccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELINNVA 217 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a 217 (266)
...+++..++|.|++|+|||||+..++....
T Consensus 29 ~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~ 59 (300)
T TIGR00750 29 PYTGNAHRVGITGTPGAGKSTLLEALGMELR 59 (300)
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3577899999999999999999999887543
No 442
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=94.35 E-value=0.03 Score=55.28 Aligned_cols=31 Identities=32% Similarity=0.451 Sum_probs=27.0
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 270 ~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G 300 (501)
T PRK10762 270 DVSFTLRKGEILGVSGLMGAGRTELMKVLYG 300 (501)
T ss_pred cceEEEcCCcEEEEecCCCCCHHHHHHHHhC
Confidence 3446889999999999999999999987764
No 443
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=94.35 E-value=0.03 Score=56.32 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=27.4
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+|++++|.|++|+|||||+.-+..-
T Consensus 353 ~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 353 DVSFEAKPGQTVAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34467889999999999999999999877653
No 444
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.043 Score=55.44 Aligned_cols=33 Identities=30% Similarity=0.422 Sum_probs=28.7
Q ss_pred eecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 183 ID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
=|.=+++-+||++.|.|.||+|||||+..+..-
T Consensus 338 ~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~ 370 (559)
T COG4988 338 SDLNLTIKAGQLTALVGASGAGKSTLLNLLLGF 370 (559)
T ss_pred CCceeEecCCcEEEEECCCCCCHHHHHHHHhCc
Confidence 366788999999999999999999999877653
No 445
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=94.31 E-value=0.032 Score=55.21 Aligned_cols=35 Identities=34% Similarity=0.517 Sum_probs=29.6
Q ss_pred ceEee-cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 180 IKVVD-LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 180 IraID-~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.++++ .=+++-+|+.++|+|++|+|||||+..|+.
T Consensus 275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G 310 (506)
T PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFG 310 (506)
T ss_pred cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhC
Confidence 34554 447899999999999999999999998875
No 446
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=94.30 E-value=0.033 Score=54.75 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=27.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 278 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G 308 (490)
T PRK10938 278 NLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308 (490)
T ss_pred eceEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 4456788999999999999999999988765
No 447
>PRK08840 replicative DNA helicase; Provisional
Probab=94.30 E-value=0.05 Score=53.90 Aligned_cols=46 Identities=22% Similarity=0.186 Sum_probs=40.3
Q ss_pred ccccccceEeeccc-ccccCceeeeecCCCccHHHHHHHHHHHHHhc
Q psy17544 174 EILVTGIKVVDLLA-PYAKGGKIGLFGGAGVGKTVLIMELINNVAKA 219 (266)
Q Consensus 174 e~l~TGIraID~L~-pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~ 219 (266)
.-+.||+..+|-++ .+-+|+=+-|-|.+|+|||+++.+++.|.+..
T Consensus 198 ~gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~ 244 (464)
T PRK08840 198 TGVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD 244 (464)
T ss_pred CCcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh
Confidence 35799999999986 68899999999999999999999999987643
No 448
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.28 E-value=0.077 Score=50.08 Aligned_cols=28 Identities=36% Similarity=0.301 Sum_probs=25.3
Q ss_pred ccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELINNVA 217 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~~~a 217 (266)
.+|+.+++.|++|+||||++..++....
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 5799999999999999999999988654
No 449
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.28 E-value=0.034 Score=56.03 Aligned_cols=31 Identities=32% Similarity=0.547 Sum_probs=27.4
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+|++|.|+.|+|||||+..|+.
T Consensus 340 ~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g 370 (530)
T COG0488 340 DLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG 370 (530)
T ss_pred CceEEecCCCEEEEECCCCCCHHHHHHHHhh
Confidence 5556788999999999999999999998755
No 450
>PRK07004 replicative DNA helicase; Provisional
Probab=94.27 E-value=0.071 Score=52.72 Aligned_cols=46 Identities=26% Similarity=0.234 Sum_probs=40.2
Q ss_pred cccccceEeecccc-cccCceeeeecCCCccHHHHHHHHHHHHHhcC
Q psy17544 175 ILVTGIKVVDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 220 (266)
Q Consensus 175 ~l~TGIraID~L~p-igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~ 220 (266)
-+.||+.-+|-++- +-+|+=+.|-|.+|+|||+++.+++.+.+..+
T Consensus 195 gi~TG~~~LD~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~ 241 (460)
T PRK07004 195 GTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEY 241 (460)
T ss_pred CccCCcHHhcccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHc
Confidence 57899999999864 88999999999999999999999998876433
No 451
>PRK13409 putative ATPase RIL; Provisional
Probab=94.26 E-value=0.045 Score=55.68 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=28.7
Q ss_pred EeecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 182 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 182 aID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
+++.+..+-+|+.+||+|+.|+|||||+..|+-
T Consensus 89 ~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G 121 (590)
T PRK13409 89 KLYGLPIPKEGKVTGILGPNGIGKTTAVKILSG 121 (590)
T ss_pred eEecCCcCCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 566666889999999999999999999987654
No 452
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=94.25 E-value=0.036 Score=56.56 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=29.3
Q ss_pred ceEeec-ccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 180 IKVVDL-LAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 180 IraID~-L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.+++|. =+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~G 372 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLR 372 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 345544 46899999999999999999999987765
No 453
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=94.23 E-value=0.045 Score=56.28 Aligned_cols=33 Identities=30% Similarity=0.366 Sum_probs=27.9
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
|.=+.+-+||+++|.|++|+|||||+..|....
T Consensus 475 ~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~ 507 (694)
T TIGR01846 475 NLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY 507 (694)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 334668899999999999999999999887643
No 454
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=94.23 E-value=0.031 Score=55.23 Aligned_cols=30 Identities=30% Similarity=0.501 Sum_probs=26.7
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=+.+-+|++++|.|+.|+|||||+..|+.
T Consensus 272 isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G 301 (501)
T PRK11288 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYG 301 (501)
T ss_pred eeEEEeCCcEEEEEcCCCCCHHHHHHHHcC
Confidence 336899999999999999999999998765
No 455
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.23 E-value=0.033 Score=52.09 Aligned_cols=53 Identities=26% Similarity=0.313 Sum_probs=39.3
Q ss_pred eEeecccccccCceeeeecCCCccHHHHHHHHHHHHHhc-CCcEEEEEeecCCch
Q psy17544 181 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKA-HGGYSVFAGVGERTR 234 (266)
Q Consensus 181 raID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~-~~~v~V~alIGER~r 234 (266)
.+-|.-+.|-+|++.|+.|+.|+||||++.|+.-- -.. +|.+-|-+.+=-|.+
T Consensus 39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGl-l~p~~G~v~V~G~~Pf~~~ 92 (325)
T COG4586 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGL-LLPTSGKVRVNGKDPFRRR 92 (325)
T ss_pred hhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCc-cccCCCeEEecCcCcchhH
Confidence 56688999999999999999999999999987542 222 233555555555544
No 456
>PF13173 AAA_14: AAA domain
Probab=94.23 E-value=0.05 Score=43.80 Aligned_cols=44 Identities=27% Similarity=0.236 Sum_probs=29.2
Q ss_pred ceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGN 237 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ 237 (266)
+-+.|.|+.|+|||||+.+++.... ....+..+-+-..+.++..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~~~ 46 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRRLA 46 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHHHh
Confidence 4578999999999999999997643 1112444445555554433
No 457
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=94.22 E-value=0.071 Score=48.63 Aligned_cols=43 Identities=26% Similarity=0.294 Sum_probs=29.3
Q ss_pred ceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGN 237 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ 237 (266)
-|+.|.|++|+|||+|+..+..+....- -.||....+...+.-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f--~~I~l~t~~~n~~~~ 56 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKF--DHIFLITPEYNNEYY 56 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccC--CEEEEEecCCchhhh
Confidence 4889999999999999999988643221 244444445555443
No 458
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.22 E-value=0.023 Score=48.82 Aligned_cols=33 Identities=36% Similarity=0.506 Sum_probs=28.6
Q ss_pred EeecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 182 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 182 aID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.+|.|...-+++...++|.||||||||+..+..
T Consensus 25 g~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~ 57 (161)
T PF03193_consen 25 GIEELKELLKGKTSVLLGQSGVGKSSLINALLP 57 (161)
T ss_dssp THHHHHHHHTTSEEEEECSTTSSHHHHHHHHHT
T ss_pred CHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHh
Confidence 366777788899999999999999999988765
No 459
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=94.20 E-value=0.035 Score=54.85 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=27.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 22 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 52 (501)
T PRK11288 22 DISFDCRAGQVHALMGENGAGKSTLLKILSG 52 (501)
T ss_pred eeeEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4447899999999999999999999987765
No 460
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.16 E-value=0.048 Score=46.85 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.2
Q ss_pred cCceeeeecCCCccHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.|+.+.|+|++|+|||||+..++.-
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4889999999999999999988763
No 461
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.15 E-value=0.08 Score=51.22 Aligned_cols=45 Identities=33% Similarity=0.514 Sum_probs=35.0
Q ss_pred cccccccceEeecc-cccccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544 173 QEILVTGIKVVDLL-APYAKGGKIGLFGGAGVGKTVLIMELINNVA 217 (266)
Q Consensus 173 ~e~l~TGIraID~L-~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a 217 (266)
.+.+..-+.+++.. ..+-+|+-++++|++|+||||++..|+....
T Consensus 117 ~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 117 QSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred HHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44555556666655 3477899999999999999999999987543
No 462
>PRK07773 replicative DNA helicase; Validated
Probab=94.09 E-value=0.084 Score=56.24 Aligned_cols=48 Identities=23% Similarity=0.276 Sum_probs=41.7
Q ss_pred ccccccceEeeccc-ccccCceeeeecCCCccHHHHHHHHHHHHHhcCC
Q psy17544 174 EILVTGIKVVDLLA-PYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHG 221 (266)
Q Consensus 174 e~l~TGIraID~L~-pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~ 221 (266)
..+.||+..+|-++ -+-+|+=+.|-|.+|+|||+++.+++.|.+..++
T Consensus 198 ~Gi~TG~~~LD~l~~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~~ 246 (886)
T PRK07773 198 RGVPTGFTELDAMTNGLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHR 246 (886)
T ss_pred CCccCChhHhccccCCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcC
Confidence 46899999999987 3779999999999999999999999998765443
No 463
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.07 E-value=0.086 Score=44.99 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=35.5
Q ss_pred eeeecCCCccHHHHHHHHHHHHH------hcCCcEEEEEeecCCchHHHHHHHHhHh
Q psy17544 195 IGLFGGAGVGKTVLIMELINNVA------KAHGGYSVFAGVGERTREGNDLYHEMIE 245 (266)
Q Consensus 195 ~gIfgg~G~GKT~L~~~ii~~~a------~~~~~v~V~alIGER~rEv~ef~~~l~~ 245 (266)
..|-||+|+|||+++..++.... ..+.. --+..+......+.++++.|.+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~-~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRG-KKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH-------HCCCS-S-EEEEESSHHHHHHHHHHHHC
T ss_pred EEEECCCCCChHHHHHHHHHHhccchhhhhhhcc-ccceeecCCchhHHHHHHHHHh
Confidence 56889999999999988888651 12212 2234567788899999999988
No 464
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=94.06 E-value=0.04 Score=54.81 Aligned_cols=35 Identities=29% Similarity=0.451 Sum_probs=29.1
Q ss_pred eEee-cccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 181 KVVD-LLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 181 raID-~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.++| .=+.+-+|+.++|+|++|+|||||+..|+.-
T Consensus 300 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 335 (529)
T PRK15134 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRL 335 (529)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 3454 4468999999999999999999999887753
No 465
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.05 E-value=0.056 Score=50.83 Aligned_cols=54 Identities=22% Similarity=0.266 Sum_probs=37.2
Q ss_pred eeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCcc
Q psy17544 194 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVI 249 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl 249 (266)
-+.+|||+|.|||||++-|++-.-.+ -.+.=+-.=||..+..-++..+++.+|+
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Emgvn--~k~tsGp~leK~gDlaaiLt~Le~~DVL 107 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANELGVN--LKITSGPALEKPGDLAAILTNLEEGDVL 107 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHHHHhcCC--eEecccccccChhhHHHHHhcCCcCCeE
Confidence 35689999999999998666543211 1233334557888888877777777765
No 466
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=94.04 E-value=0.044 Score=45.18 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=22.6
Q ss_pred cccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 189 YAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 189 igkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
-.+--|++|+|++|+|||+|+..+...
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcC
Confidence 344568999999999999999988763
No 467
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.99 E-value=0.056 Score=46.43 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=24.3
Q ss_pred cccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 189 YAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 189 igkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
+-+|+.++|.|++|+|||||+..++...
T Consensus 22 v~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 22 VEARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5679999999999999999998887643
No 468
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.99 E-value=0.054 Score=47.02 Aligned_cols=27 Identities=15% Similarity=0.108 Sum_probs=23.7
Q ss_pred cccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 189 YAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 189 igkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+.+|.++.|.|+.|+|||||+.+++.+
T Consensus 26 l~~~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 26 LGSGRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred EcCCeEEEEECCCCCccHHHHHHHHHH
Confidence 446899999999999999999988744
No 469
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=93.97 E-value=0.038 Score=49.73 Aligned_cols=32 Identities=31% Similarity=0.453 Sum_probs=29.0
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.-|..-+||=.||+|+.|+||||++.+|+.-
T Consensus 20 dVSF~ae~Gei~GlLG~NGAGKTT~LRmiatl 51 (245)
T COG4555 20 DVSFEAEEGEITGLLGENGAGKTTLLRMIATL 51 (245)
T ss_pred heeEEeccceEEEEEcCCCCCchhHHHHHHHh
Confidence 67788999999999999999999999988763
No 470
>PLN03232 ABC transporter C family member; Provisional
Probab=93.97 E-value=0.048 Score=61.05 Aligned_cols=33 Identities=27% Similarity=0.427 Sum_probs=28.6
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
|.=+.+-+|+|++|.|.+|+|||||+..+.+-.
T Consensus 1254 ~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~ 1286 (1495)
T PLN03232 1254 GLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV 1286 (1495)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444678899999999999999999999888743
No 471
>PHA00729 NTP-binding motif containing protein
Probab=93.95 E-value=0.026 Score=51.00 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=24.7
Q ss_pred eecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 183 ID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
++.|.+.+. ..+.|+|.+|+|||+|+..+++.
T Consensus 9 ~~~l~~~~f-~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 9 VSAYNNNGF-VSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHhcCCe-EEEEEECCCCCCHHHHHHHHHHH
Confidence 334444444 48999999999999999998875
No 472
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=93.93 E-value=0.13 Score=46.09 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=33.4
Q ss_pred ccCceeeeecCCCccHHHHHHHHHHHHH-hcCCcEEEEEeecCCchH
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELINNVA-KAHGGYSVFAGVGERTRE 235 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~~~a-~~~~~v~V~alIGER~rE 235 (266)
...+.++|.|.+|+|||+|+.++++... +.+-+.+++.-.+.....
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~ 63 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSL 63 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCC
T ss_pred CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccc
Confidence 4567889999999999999999987622 222246777777776655
No 473
>PRK05636 replicative DNA helicase; Provisional
Probab=93.93 E-value=0.1 Score=52.31 Aligned_cols=47 Identities=28% Similarity=0.389 Sum_probs=39.9
Q ss_pred ccccccceEeecccc-cccCceeeeecCCCccHHHHHHHHHHHHHhcC
Q psy17544 174 EILVTGIKVVDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 220 (266)
Q Consensus 174 e~l~TGIraID~L~p-igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~ 220 (266)
.-+.||+..+|-++. +-+|+=+.|-|.+|+|||+|+.+++.+.+..+
T Consensus 246 ~Gi~TG~~~LD~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~ 293 (505)
T PRK05636 246 TGIPTGFKDLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIKH 293 (505)
T ss_pred CceecChHHHhhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhC
Confidence 358999999999864 77889999999999999999999998865433
No 474
>PLN03073 ABC transporter F family; Provisional
Probab=93.91 E-value=0.042 Score=57.23 Aligned_cols=31 Identities=19% Similarity=0.381 Sum_probs=27.3
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|++++|+|++|+|||||+..|+.
T Consensus 527 ~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~G 557 (718)
T PLN03073 527 NLNFGIDLDSRIAMVGPNGIGKSTILKLISG 557 (718)
T ss_pred ccEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3447899999999999999999999987765
No 475
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.88 E-value=0.14 Score=41.28 Aligned_cols=42 Identities=29% Similarity=0.262 Sum_probs=28.3
Q ss_pred eeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHH
Q psy17544 195 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYH 241 (266)
Q Consensus 195 ~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~ 241 (266)
+.|.|++|+|||+|+..+++.. . ..++..-+-..-+..+++-
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~-~----~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL-G----RPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH-T----CEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh-h----cceEEEEecccccccccee
Confidence 5789999999999999998854 2 2333444445555556653
No 476
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.88 E-value=0.11 Score=51.80 Aligned_cols=46 Identities=35% Similarity=0.532 Sum_probs=32.5
Q ss_pred ccccceEeecc-cccccCceeeeecCCCccHHHHHHHHHHHHHhcCC
Q psy17544 176 LVTGIKVVDLL-APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHG 221 (266)
Q Consensus 176 l~TGIraID~L-~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~ 221 (266)
+..-+++++.. ..+.+|+-++++|+.|+||||++..|+......++
T Consensus 239 l~~~l~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G 285 (484)
T PRK06995 239 LAKNLPVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHG 285 (484)
T ss_pred HHHHHhhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcC
Confidence 33333444322 34568999999999999999999999976543443
No 477
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=93.86 E-value=0.045 Score=54.96 Aligned_cols=31 Identities=32% Similarity=0.602 Sum_probs=27.4
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|++++|.|++|+|||||+..|+.
T Consensus 342 ~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G 372 (556)
T PRK11819 342 DLSFSLPPGGIVGIIGPNGAGKSTLFKMITG 372 (556)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4457789999999999999999999988764
No 478
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=93.83 E-value=0.042 Score=54.50 Aligned_cols=30 Identities=30% Similarity=0.407 Sum_probs=26.3
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 282 isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G 311 (510)
T PRK15439 282 ISLEVRAGEILGLAGVVGAGRTELAETLYG 311 (510)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 345788999999999999999999987764
No 479
>PRK06904 replicative DNA helicase; Validated
Probab=93.82 E-value=0.064 Score=53.26 Aligned_cols=46 Identities=26% Similarity=0.248 Sum_probs=39.6
Q ss_pred ccccccceEeeccc-ccccCceeeeecCCCccHHHHHHHHHHHHHhc
Q psy17544 174 EILVTGIKVVDLLA-PYAKGGKIGLFGGAGVGKTVLIMELINNVAKA 219 (266)
Q Consensus 174 e~l~TGIraID~L~-pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~ 219 (266)
.-+.||+..+|-++ .+-+|+=+-|=|-+|+|||+++.+++.|.+..
T Consensus 202 ~Gi~TG~~~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~ 248 (472)
T PRK06904 202 TGVTTGFTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMA 248 (472)
T ss_pred CCccCChHHHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHh
Confidence 35789999999985 58889999899999999999999999987644
No 480
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.79 E-value=0.053 Score=46.64 Aligned_cols=21 Identities=48% Similarity=0.862 Sum_probs=19.0
Q ss_pred eeeecCCCccHHHHHHHHHHH
Q psy17544 195 IGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 195 ~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+||.|++|+|||||+..|...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988764
No 481
>PLN03130 ABC transporter C family member; Provisional
Probab=93.76 E-value=0.057 Score=60.95 Aligned_cols=45 Identities=24% Similarity=0.434 Sum_probs=33.2
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEee
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 229 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alI 229 (266)
|.=+++-+|||+||.|.+|+|||||+..|.+-. +.+.+-+.+-++
T Consensus 1257 ~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~-~p~~G~I~IDG~ 1301 (1622)
T PLN03130 1257 GLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV-ELERGRILIDGC 1301 (1622)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCCceEEECCE
Confidence 445789999999999999999999999887743 333333444333
No 482
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=93.74 E-value=0.052 Score=43.63 Aligned_cols=22 Identities=45% Similarity=0.813 Sum_probs=20.0
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.+|+|||+|+..++.+
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999988864
No 483
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.73 E-value=0.11 Score=46.15 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=24.6
Q ss_pred cccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544 189 YAKGGKIGLFGGAGVGKTVLIMELINNVA 217 (266)
Q Consensus 189 igkGQr~gIfgg~G~GKT~L~~~ii~~~a 217 (266)
-++...+||.|++|+|||||+..++....
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 36677899999999999999998887553
No 484
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=93.72 E-value=0.046 Score=54.80 Aligned_cols=31 Identities=32% Similarity=0.577 Sum_probs=27.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 340 ~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G 370 (552)
T TIGR03719 340 DLSFKLPPGGIVGVIGPNGAGKSTLFRMITG 370 (552)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 3556789999999999999999999987764
No 485
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=93.71 E-value=0.055 Score=60.61 Aligned_cols=33 Identities=33% Similarity=0.616 Sum_probs=28.8
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
|.=+.+-+|||++|.|.+|+|||||+..|.+-.
T Consensus 1237 ~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~ 1269 (1490)
T TIGR01271 1237 DLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL 1269 (1490)
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 444778899999999999999999999888754
No 486
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.71 E-value=0.054 Score=45.86 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.8
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|++|+||||++..|+..
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999988764
No 487
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.64 E-value=0.071 Score=41.85 Aligned_cols=23 Identities=35% Similarity=0.673 Sum_probs=19.6
Q ss_pred eeeecCCCccHHHHHHHHHHHHH
Q psy17544 195 IGLFGGAGVGKTVLIMELINNVA 217 (266)
Q Consensus 195 ~gIfgg~G~GKT~L~~~ii~~~a 217 (266)
+-|+|++|+|||+|+..+++...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 34899999999999999887654
No 488
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.64 E-value=0.24 Score=45.75 Aligned_cols=31 Identities=35% Similarity=0.568 Sum_probs=26.3
Q ss_pred cccCceeeeecCCCccHHHHHHHHHHHHHhc
Q psy17544 189 YAKGGKIGLFGGAGVGKTVLIMELINNVAKA 219 (266)
Q Consensus 189 igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~ 219 (266)
+.+|+.++|.|++|+||||++..++...+..
T Consensus 191 ~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 191 LEQGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3478899999999999999999999866443
No 489
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=93.63 E-value=0.023 Score=51.94 Aligned_cols=50 Identities=30% Similarity=0.486 Sum_probs=38.4
Q ss_pred ccceEee-cccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEe
Q psy17544 178 TGIKVVD-LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 228 (266)
Q Consensus 178 TGIraID-~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~al 228 (266)
-|++|+| .=+.+-+|+..+|+||.|+|||||..-+.-. -+.+.+.+.|-+
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~-~~P~~G~v~~~G 65 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGF-YKPSSGTVIFRG 65 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccc-ccCCCceEEECC
Confidence 6888885 4578999999999999999999999755443 345555666654
No 490
>PF14516 AAA_35: AAA-like domain
Probab=93.61 E-value=0.17 Score=47.73 Aligned_cols=77 Identities=17% Similarity=0.298 Sum_probs=52.6
Q ss_pred ccccCcccccccccccccccccceEeeccccccc-CceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEee---cC-C
Q psy17544 158 AIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAK-GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV---GE-R 232 (266)
Q Consensus 158 pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigk-GQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alI---GE-R 232 (266)
++....|.+.+|+++++-+... |.+ |+=+-|+|+.++|||+|+..+.+.. ...+-.+|+.=+ |. .
T Consensus 5 ~~~~~~~~Yi~R~~~e~~~~~~---------i~~~G~~~~I~apRq~GKTSll~~l~~~l-~~~~~~~v~id~~~~~~~~ 74 (331)
T PF14516_consen 5 PLPLDSPFYIERPPAEQECYQE---------IVQPGSYIRIKAPRQMGKTSLLLRLLERL-QQQGYRCVYIDLQQLGSAI 74 (331)
T ss_pred CCCCCCCcccCchHHHHHHHHH---------HhcCCCEEEEECcccCCHHHHHHHHHHHH-HHCCCEEEEEEeecCCCcc
Confidence 3455577788998777666554 344 9999999999999999999998764 334445555443 33 2
Q ss_pred chHHHHHHHHhH
Q psy17544 233 TREGNDLYHEMI 244 (266)
Q Consensus 233 ~rEv~ef~~~l~ 244 (266)
.....+|++.|-
T Consensus 75 ~~~~~~f~~~~~ 86 (331)
T PF14516_consen 75 FSDLEQFLRWFC 86 (331)
T ss_pred cCCHHHHHHHHH
Confidence 345666666653
No 491
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=93.61 E-value=0.053 Score=54.82 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=27.0
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 42 nVSfsI~~GEivgIiGpNGSGKSTLLkiLaG 72 (549)
T PRK13545 42 NISFEVPEGEIVGIIGLNGSGKSTLSNLIAG 72 (549)
T ss_pred eeEEEEeCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 4456788999999999999999999987765
No 492
>PRK08006 replicative DNA helicase; Provisional
Probab=93.57 E-value=0.086 Score=52.37 Aligned_cols=45 Identities=22% Similarity=0.183 Sum_probs=39.3
Q ss_pred cccccceEeeccc-ccccCceeeeecCCCccHHHHHHHHHHHHHhc
Q psy17544 175 ILVTGIKVVDLLA-PYAKGGKIGLFGGAGVGKTVLIMELINNVAKA 219 (266)
Q Consensus 175 ~l~TGIraID~L~-pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~ 219 (266)
-+.||+..+|-++ -+-+|+=+-|=|.+|+|||+++.+++.|.+..
T Consensus 206 Gi~TG~~~LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~ 251 (471)
T PRK08006 206 GVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAML 251 (471)
T ss_pred cccCCCHHHHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 4799999999864 78889999999999999999999999987643
No 493
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.56 E-value=0.061 Score=50.97 Aligned_cols=42 Identities=21% Similarity=0.404 Sum_probs=29.9
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEE
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 226 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~ 226 (266)
|.-+-|--|+.++++|+||+|||||+..|+ +.-..+.+.++|
T Consensus 20 di~l~i~~Ge~vaLlGpSGaGKsTlLRiIA-GLe~p~~G~I~~ 61 (345)
T COG1118 20 DISLDIKSGELVALLGPSGAGKSTLLRIIA-GLETPDAGRIRL 61 (345)
T ss_pred cceeeecCCcEEEEECCCCCcHHHHHHHHh-CcCCCCCceEEE
Confidence 355567799999999999999999997554 332333344444
No 494
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=93.55 E-value=0.052 Score=54.22 Aligned_cols=38 Identities=16% Similarity=0.341 Sum_probs=29.2
Q ss_pred cccccccc-eEe-ecccccccCceeeeecCCCccHHHHHH
Q psy17544 173 QEILVTGI-KVV-DLLAPYAKGGKIGLFGGAGVGKTVLIM 210 (266)
Q Consensus 173 ~e~l~TGI-raI-D~L~pigkGQr~gIfgg~G~GKT~L~~ 210 (266)
+.++++.. +++ |.-+.+-+|+-++|.|++|+|||||+.
T Consensus 11 ~r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 11 KRKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred chHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 34444443 334 336689999999999999999999998
No 495
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=93.55 E-value=0.049 Score=53.61 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=25.7
Q ss_pred cccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 269 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G 296 (491)
T PRK10982 269 FDLHKGEILGIAGLVGAKRTDIVETLFG 296 (491)
T ss_pred EEEeCCcEEEEecCCCCCHHHHHHHHcC
Confidence 5799999999999999999999987764
No 496
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.52 E-value=0.081 Score=38.37 Aligned_cols=21 Identities=33% Similarity=0.665 Sum_probs=19.0
Q ss_pred eeeecCCCccHHHHHHHHHHH
Q psy17544 195 IGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 195 ~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+.|.|++|+||||++..+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999988875
No 497
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=93.52 E-value=0.12 Score=47.29 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=20.7
Q ss_pred CceeeeecCCCccHHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.+-+.|+|++|+|||+|+..+++.
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~ 53 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANE 53 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999988764
No 498
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.52 E-value=0.081 Score=44.46 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=20.6
Q ss_pred CceeeeecCCCccHHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
--.+.|+|++|+||||++..++..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999988764
No 499
>PTZ00301 uridine kinase; Provisional
Probab=93.51 E-value=0.11 Score=46.08 Aligned_cols=22 Identities=32% Similarity=0.708 Sum_probs=19.3
Q ss_pred eeeecCCCccHHHHHHHHHHHH
Q psy17544 195 IGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 195 ~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
+||-|+||+|||||+..|+...
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHH
Confidence 7899999999999998887654
No 500
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=93.49 E-value=0.069 Score=41.77 Aligned_cols=23 Identities=39% Similarity=0.627 Sum_probs=20.4
Q ss_pred eeeeecCCCccHHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
|+++.|.+|+|||+|+..+..+.
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999887653
Done!