Query psy17544
Match_columns 266
No_of_seqs 175 out of 1450
Neff 5.9
Searched_HMMs 29240
Date Sat Aug 17 01:15:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17544.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17544hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ck3_D ATP synthase subunit be 100.0 5.2E-54 1.8E-58 417.2 20.9 216 50-265 11-226 (482)
2 1fx0_B ATP synthase beta chain 100.0 1.6E-53 5.6E-58 415.1 20.2 213 53-265 20-239 (498)
3 3vr4_D V-type sodium ATPase su 100.0 3.4E-50 1.2E-54 388.8 19.2 206 51-265 10-221 (465)
4 3gqb_B V-type ATP synthase bet 100.0 3.6E-50 1.2E-54 388.6 18.0 207 50-265 5-224 (464)
5 3oaa_A ATP synthase subunit al 100.0 9.2E-50 3.2E-54 388.7 19.6 211 41-265 18-228 (513)
6 2c61_A A-type ATP synthase non 100.0 3.4E-50 1.1E-54 390.1 14.5 209 48-265 9-222 (469)
7 2ck3_A ATP synthase subunit al 100.0 2.6E-49 9E-54 386.4 19.5 213 40-265 17-236 (510)
8 2qe7_A ATP synthase subunit al 100.0 2.5E-49 8.6E-54 386.0 18.2 212 40-265 17-228 (502)
9 1fx0_A ATP synthase alpha chai 100.0 3.2E-49 1.1E-53 385.6 15.3 212 40-265 18-229 (507)
10 2r9v_A ATP synthase subunit al 100.0 8.6E-49 3E-53 382.6 17.3 213 40-265 29-241 (515)
11 1sky_E F1-ATPase, F1-ATP synth 100.0 9.3E-47 3.2E-51 366.4 19.8 207 53-265 3-218 (473)
12 3vr4_A V-type sodium ATPase ca 100.0 6.7E-46 2.3E-50 366.0 15.7 199 53-265 10-303 (600)
13 3gqb_A V-type ATP synthase alp 100.0 1.7E-45 5.8E-50 361.9 14.8 206 53-265 3-292 (578)
14 3mfy_A V-type ATP synthase alp 100.0 1.1E-45 3.9E-50 363.3 4.7 200 52-265 3-298 (588)
15 2dpy_A FLII, flagellum-specifi 100.0 5.1E-36 1.7E-40 288.9 15.3 204 50-265 7-221 (438)
16 2obl_A ESCN; ATPase, hydrolase 99.9 1.7E-27 5.9E-32 223.1 5.6 132 124-265 2-134 (347)
17 3l0o_A Transcription terminati 99.9 1.5E-26 5.2E-31 220.2 3.1 132 108-244 94-228 (427)
18 3ice_A Transcription terminati 99.9 3.9E-22 1.3E-26 190.0 6.8 130 109-243 91-226 (422)
19 2ehv_A Hypothetical protein PH 97.9 1E-05 3.5E-10 69.1 5.0 43 173-215 9-53 (251)
20 2zts_A Putative uncharacterize 97.9 1.1E-05 3.7E-10 68.9 5.0 65 174-238 10-76 (251)
21 2w0m_A SSO2452; RECA, SSPF, un 97.9 1.2E-05 4.3E-10 67.5 4.9 61 174-235 3-65 (235)
22 4a74_A DNA repair and recombin 97.6 1.4E-05 4.7E-10 67.5 1.6 43 174-216 5-49 (231)
23 2cvh_A DNA repair and recombin 97.6 3.9E-05 1.3E-09 64.3 4.3 39 176-214 2-42 (220)
24 2dr3_A UPF0273 protein PH0284; 97.6 4.3E-05 1.5E-09 65.1 4.5 62 174-236 3-66 (247)
25 1n0w_A DNA repair protein RAD5 97.6 5.1E-05 1.7E-09 64.6 4.4 42 174-215 4-47 (243)
26 3io5_A Recombination and repai 97.3 0.00013 4.5E-09 67.9 3.3 55 174-229 5-66 (333)
27 1cr0_A DNA primase/helicase; R 97.2 0.0003 1E-08 62.6 4.7 48 174-221 15-64 (296)
28 2z43_A DNA repair and recombin 97.1 0.00034 1.2E-08 63.7 4.0 44 173-216 86-131 (324)
29 1nlf_A Regulatory protein REPA 97.0 0.00084 2.9E-08 59.3 5.9 47 171-217 8-55 (279)
30 3hr8_A Protein RECA; alpha and 97.0 0.0004 1.4E-08 65.0 3.7 53 174-227 40-95 (356)
31 2zr9_A Protein RECA, recombina 96.9 0.00048 1.6E-08 64.0 3.8 56 173-229 39-97 (349)
32 1v5w_A DMC1, meiotic recombina 96.9 0.00087 3E-08 61.7 5.1 44 173-216 101-146 (343)
33 3lda_A DNA repair protein RAD5 96.8 0.0007 2.4E-08 64.2 4.1 48 169-216 153-202 (400)
34 3bh0_A DNAB-like replicative h 96.8 0.00071 2.4E-08 61.5 3.9 46 174-219 49-95 (315)
35 1u94_A RECA protein, recombina 96.8 0.00079 2.7E-08 62.8 4.0 46 173-218 41-89 (356)
36 1pzn_A RAD51, DNA repair and r 96.7 0.00038 1.3E-08 64.4 1.4 46 171-216 108-155 (349)
37 2i1q_A DNA repair and recombin 96.7 0.0011 3.6E-08 59.9 3.9 44 172-215 76-121 (322)
38 2r6a_A DNAB helicase, replicat 96.6 0.0014 4.7E-08 62.4 4.6 48 174-221 184-232 (454)
39 1zp6_A Hypothetical protein AT 96.6 0.0011 3.8E-08 54.4 3.2 29 186-214 3-31 (191)
40 3tr0_A Guanylate kinase, GMP k 96.6 0.0013 4.6E-08 54.4 3.7 28 188-215 3-30 (205)
41 1xp8_A RECA protein, recombina 96.6 0.0012 4.2E-08 61.7 3.8 55 173-228 52-109 (366)
42 1z6g_A Guanylate kinase; struc 96.6 0.0012 4.1E-08 56.6 3.3 31 185-215 16-46 (218)
43 3ec2_A DNA replication protein 96.5 0.0019 6.5E-08 52.9 4.2 29 188-216 34-62 (180)
44 1znw_A Guanylate kinase, GMP k 96.5 0.0015 5E-08 55.2 3.4 28 188-215 16-43 (207)
45 2q6t_A DNAB replication FORK h 96.4 0.0021 7.3E-08 61.0 4.4 59 174-233 181-240 (444)
46 1tf7_A KAIC; homohexamer, hexa 96.3 0.0024 8.1E-08 61.9 4.1 43 174-216 19-64 (525)
47 3tif_A Uncharacterized ABC tra 96.3 0.0017 6E-08 56.6 2.8 34 181-214 19-53 (235)
48 2j41_A Guanylate kinase; GMP, 96.3 0.0026 9E-08 52.6 3.7 28 188-215 2-29 (207)
49 1htw_A HI0065; nucleotide-bind 96.3 0.0025 8.6E-08 52.5 3.5 30 187-216 28-57 (158)
50 4a1f_A DNAB helicase, replicat 96.3 0.0024 8.3E-08 59.2 3.7 45 174-218 27-72 (338)
51 3c8u_A Fructokinase; YP_612366 96.2 0.0024 8.1E-08 53.9 3.2 28 189-216 19-46 (208)
52 3bgw_A DNAB-like replicative h 96.2 0.0036 1.2E-07 59.9 4.8 63 173-236 177-240 (444)
53 4eun_A Thermoresistant glucoki 96.2 0.0028 9.5E-08 53.0 3.6 38 178-215 15-52 (200)
54 2v9p_A Replication protein E1; 96.2 0.0021 7.1E-08 58.9 2.9 33 184-216 118-150 (305)
55 2cbz_A Multidrug resistance-as 96.2 0.0021 7.1E-08 56.2 2.8 31 184-214 23-53 (237)
56 2pcj_A ABC transporter, lipopr 96.2 0.002 6.8E-08 55.8 2.3 31 184-214 22-52 (224)
57 2ff7_A Alpha-hemolysin translo 96.1 0.0022 7.6E-08 56.5 2.6 31 184-214 27-57 (247)
58 1b0u_A Histidine permease; ABC 96.1 0.0025 8.4E-08 56.6 2.8 31 184-214 24-54 (262)
59 2zu0_C Probable ATP-dependent 96.1 0.003 1E-07 56.3 3.3 31 184-214 38-68 (267)
60 4g1u_C Hemin import ATP-bindin 96.1 0.0023 7.9E-08 57.1 2.6 34 181-214 25-59 (266)
61 2d2e_A SUFC protein; ABC-ATPas 96.1 0.0028 9.7E-08 55.7 3.1 31 184-214 21-51 (250)
62 1g6h_A High-affinity branched- 96.1 0.0026 9E-08 56.1 2.9 31 184-214 25-55 (257)
63 1q57_A DNA primase/helicase; d 96.1 0.0031 1.1E-07 60.5 3.6 61 174-234 222-284 (503)
64 2jeo_A Uridine-cytidine kinase 96.1 0.0035 1.2E-07 54.3 3.6 30 185-214 18-47 (245)
65 1kgd_A CASK, peripheral plasma 96.1 0.0037 1.3E-07 51.5 3.6 25 191-215 4-28 (180)
66 1lvg_A Guanylate kinase, GMP k 96.1 0.0031 1.1E-07 53.1 3.1 26 191-216 3-28 (198)
67 3lnc_A Guanylate kinase, GMP k 96.1 0.0022 7.7E-08 54.7 2.3 28 187-214 22-50 (231)
68 1mv5_A LMRA, multidrug resista 96.1 0.0026 9E-08 55.6 2.7 31 184-214 20-50 (243)
69 2olj_A Amino acid ABC transpor 96.0 0.0028 9.7E-08 56.5 2.8 31 184-214 42-72 (263)
70 3gfo_A Cobalt import ATP-bindi 96.0 0.0026 8.9E-08 57.2 2.6 33 182-214 23-56 (275)
71 1vpl_A ABC transporter, ATP-bi 96.0 0.0028 9.7E-08 56.2 2.8 31 184-214 33-63 (256)
72 2pze_A Cystic fibrosis transme 96.0 0.0027 9.3E-08 55.1 2.6 31 184-214 26-56 (229)
73 2ghi_A Transport protein; mult 96.0 0.003 1E-07 56.1 2.8 31 184-214 38-68 (260)
74 3fvq_A Fe(3+) IONS import ATP- 96.0 0.0031 1.1E-07 59.0 3.1 34 181-214 18-52 (359)
75 2ixe_A Antigen peptide transpo 96.0 0.003 1E-07 56.4 2.8 31 184-214 37-67 (271)
76 1ji0_A ABC transporter; ATP bi 96.0 0.0028 9.6E-08 55.4 2.6 31 184-214 24-54 (240)
77 2qm8_A GTPase/ATPase; G protei 96.0 0.0078 2.7E-07 55.3 5.6 42 186-227 49-90 (337)
78 1sgw_A Putative ABC transporte 96.0 0.0026 9E-08 55.0 2.3 31 184-214 27-57 (214)
79 2vhj_A Ntpase P4, P4; non- hyd 96.0 0.005 1.7E-07 57.2 4.3 44 172-215 102-146 (331)
80 2ihy_A ABC transporter, ATP-bi 96.0 0.0029 9.8E-08 56.9 2.6 31 184-214 39-69 (279)
81 2yz2_A Putative ABC transporte 96.0 0.0032 1.1E-07 55.9 2.8 31 184-214 25-55 (266)
82 2eyu_A Twitching motility prot 95.9 0.0059 2E-07 54.2 4.5 33 183-216 17-49 (261)
83 2qi9_C Vitamin B12 import ATP- 95.9 0.0031 1.1E-07 55.7 2.6 31 184-214 18-48 (249)
84 3rlf_A Maltose/maltodextrin im 95.9 0.0039 1.3E-07 58.8 3.3 35 180-214 16-51 (381)
85 4gp7_A Metallophosphoesterase; 95.9 0.0032 1.1E-07 51.7 2.4 25 187-211 4-28 (171)
86 2nq2_C Hypothetical ABC transp 95.9 0.0032 1.1E-07 55.7 2.5 30 185-214 24-53 (253)
87 2yyz_A Sugar ABC transporter, 95.9 0.0041 1.4E-07 58.1 3.3 31 184-214 21-51 (359)
88 1tf7_A KAIC; homohexamer, hexa 95.9 0.0056 1.9E-07 59.3 4.4 58 174-233 261-320 (525)
89 3asz_A Uridine kinase; cytidin 95.9 0.0045 1.5E-07 51.7 3.2 27 189-215 3-29 (211)
90 1v43_A Sugar-binding transport 95.9 0.0042 1.4E-07 58.4 3.3 31 184-214 29-59 (372)
91 2it1_A 362AA long hypothetical 95.9 0.0043 1.5E-07 58.1 3.3 31 184-214 21-51 (362)
92 1z47_A CYSA, putative ABC-tran 95.8 0.0041 1.4E-07 58.1 3.1 31 184-214 33-63 (355)
93 3b9q_A Chloroplast SRP recepto 95.8 0.0094 3.2E-07 54.1 5.4 31 187-217 95-125 (302)
94 3d31_A Sulfate/molybdate ABC t 95.8 0.0037 1.3E-07 58.1 2.7 31 184-214 18-48 (348)
95 1g29_1 MALK, maltose transport 95.8 0.0044 1.5E-07 58.1 3.1 31 184-214 21-51 (372)
96 3vaa_A Shikimate kinase, SK; s 95.8 0.0061 2.1E-07 50.9 3.6 29 187-215 20-48 (199)
97 3nh6_A ATP-binding cassette SU 95.7 0.0038 1.3E-07 57.1 2.2 31 184-214 72-102 (306)
98 3gd7_A Fusion complex of cysti 95.7 0.005 1.7E-07 58.2 3.1 31 184-214 39-69 (390)
99 1oxx_K GLCV, glucose, ABC tran 95.7 0.0037 1.3E-07 58.2 2.1 31 184-214 23-53 (353)
100 3tui_C Methionine import ATP-b 95.7 0.0057 2E-07 57.4 3.3 35 180-214 41-76 (366)
101 2i3b_A HCR-ntpase, human cance 95.6 0.0063 2.2E-07 51.5 3.2 25 192-216 1-25 (189)
102 1pui_A ENGB, probable GTP-bind 95.6 0.0032 1.1E-07 52.0 1.3 33 181-214 16-48 (210)
103 2bbs_A Cystic fibrosis transme 95.6 0.005 1.7E-07 55.7 2.6 31 184-214 56-86 (290)
104 2yhs_A FTSY, cell division pro 95.6 0.013 4.4E-07 57.3 5.5 33 185-217 286-318 (503)
105 2pjz_A Hypothetical protein ST 95.6 0.0056 1.9E-07 54.6 2.7 29 185-214 24-52 (263)
106 1rj9_A FTSY, signal recognitio 95.6 0.013 4.5E-07 53.2 5.3 38 190-228 100-137 (304)
107 1t9h_A YLOQ, probable GTPase E 95.6 0.0032 1.1E-07 57.6 1.2 32 183-214 164-195 (307)
108 3b85_A Phosphate starvation-in 95.5 0.0055 1.9E-07 52.7 2.5 27 189-215 19-45 (208)
109 3a00_A Guanylate kinase, GMP k 95.5 0.0078 2.7E-07 49.8 3.2 24 192-215 1-24 (186)
110 2kjq_A DNAA-related protein; s 95.5 0.0051 1.7E-07 49.9 1.9 26 191-216 35-60 (149)
111 2qt1_A Nicotinamide riboside k 95.5 0.0091 3.1E-07 49.8 3.6 29 186-214 15-43 (207)
112 3bos_A Putative DNA replicatio 95.4 0.0078 2.7E-07 50.2 3.1 27 190-216 50-76 (242)
113 1s96_A Guanylate kinase, GMP k 95.4 0.009 3.1E-07 51.6 3.4 27 189-215 13-39 (219)
114 2og2_A Putative signal recogni 95.4 0.017 5.7E-07 54.0 5.5 41 187-228 152-192 (359)
115 1y63_A LMAJ004144AAA protein; 95.4 0.012 4.2E-07 48.4 4.1 28 188-215 6-33 (184)
116 1kag_A SKI, shikimate kinase I 95.4 0.0096 3.3E-07 47.9 3.3 25 191-215 3-27 (173)
117 1lw7_A Transcriptional regulat 95.4 0.0088 3E-07 55.0 3.4 28 188-215 164-193 (365)
118 3aez_A Pantothenate kinase; tr 95.3 0.011 3.6E-07 54.0 3.7 29 188-216 86-114 (312)
119 1knq_A Gluconate kinase; ALFA/ 95.3 0.011 3.8E-07 47.8 3.5 26 190-215 6-31 (175)
120 1ye8_A Protein THEP1, hypothet 95.3 0.011 3.7E-07 49.4 3.4 23 193-215 1-23 (178)
121 3ney_A 55 kDa erythrocyte memb 95.3 0.012 4.2E-07 50.4 3.8 29 187-215 14-42 (197)
122 3tau_A Guanylate kinase, GMP k 95.2 0.012 4E-07 49.7 3.6 26 190-215 6-31 (208)
123 3cmu_A Protein RECA, recombina 95.2 0.0084 2.9E-07 67.1 3.3 58 171-229 1403-1463(2050)
124 1rz3_A Hypothetical protein rb 95.2 0.025 8.4E-07 47.4 5.5 29 188-216 18-46 (201)
125 2onk_A Molybdate/tungstate ABC 95.2 0.011 3.7E-07 51.9 3.2 30 184-214 17-46 (240)
126 2yv5_A YJEQ protein; hydrolase 95.2 0.0067 2.3E-07 54.8 1.9 31 183-213 156-186 (302)
127 1sq5_A Pantothenate kinase; P- 95.2 0.019 6.4E-07 51.8 4.8 43 188-230 76-120 (308)
128 1yqt_A RNAse L inhibitor; ATP- 95.1 0.015 5.1E-07 56.9 4.4 33 182-214 37-69 (538)
129 3e70_C DPA, signal recognition 95.1 0.061 2.1E-06 49.4 8.2 42 188-230 125-166 (328)
130 1cke_A CK, MSSA, protein (cyti 95.1 0.014 4.8E-07 49.0 3.6 25 191-215 4-28 (227)
131 3j16_B RLI1P; ribosome recycli 95.1 0.015 5.2E-07 57.8 4.4 33 182-214 93-125 (608)
132 3uie_A Adenylyl-sulfate kinase 95.1 0.014 4.7E-07 48.7 3.5 27 190-216 23-49 (200)
133 3cmw_A Protein RECA, recombina 95.0 0.013 4.4E-07 64.7 4.0 63 169-232 8-73 (1706)
134 2qor_A Guanylate kinase; phosp 95.0 0.016 5.4E-07 48.5 3.7 27 189-215 9-35 (204)
135 2bdt_A BH3686; alpha-beta prot 95.0 0.014 4.7E-07 47.9 3.1 23 192-214 2-24 (189)
136 2npi_A Protein CLP1; CLP1-PCF1 94.9 0.012 4E-07 56.7 2.8 32 184-215 130-161 (460)
137 2chg_A Replication factor C sm 94.9 0.068 2.3E-06 43.3 7.1 24 193-216 39-62 (226)
138 1ixz_A ATP-dependent metallopr 94.9 0.016 5.5E-07 49.9 3.4 27 187-215 46-72 (254)
139 2bbw_A Adenylate kinase 4, AK4 94.8 0.017 5.6E-07 49.8 3.4 25 191-215 26-50 (246)
140 1nn5_A Similar to deoxythymidy 94.8 0.063 2.1E-06 44.3 6.8 28 189-216 6-33 (215)
141 2x8a_A Nuclear valosin-contain 94.8 0.017 5.7E-07 51.3 3.4 26 188-215 42-67 (274)
142 3cm0_A Adenylate kinase; ATP-b 94.7 0.018 6E-07 46.8 3.2 26 190-215 2-27 (186)
143 3b5x_A Lipid A export ATP-bind 94.7 0.014 4.9E-07 57.2 3.0 32 184-215 361-392 (582)
144 3cmw_A Protein RECA, recombina 94.7 0.018 6.2E-07 63.5 4.0 58 173-231 361-421 (1706)
145 3bk7_A ABC transporter ATP-bin 94.7 0.02 6.8E-07 56.9 3.9 33 182-214 107-139 (607)
146 2ewv_A Twitching motility prot 94.6 0.035 1.2E-06 51.6 5.4 29 189-217 133-161 (372)
147 1u0l_A Probable GTPase ENGC; p 94.6 0.0092 3.2E-07 53.7 1.4 32 183-214 160-191 (301)
148 2z0h_A DTMP kinase, thymidylat 94.6 0.087 3E-06 42.8 7.0 23 194-216 2-24 (197)
149 4e22_A Cytidylate kinase; P-lo 94.6 0.021 7.1E-07 49.8 3.4 25 190-214 25-49 (252)
150 3bs4_A Uncharacterized protein 94.5 0.033 1.1E-06 49.8 4.7 65 175-240 2-68 (260)
151 2gj8_A MNME, tRNA modification 94.5 0.02 6.8E-07 46.3 3.0 25 191-215 3-27 (172)
152 1vma_A Cell division protein F 94.5 0.1 3.5E-06 47.4 8.0 43 188-231 100-142 (306)
153 2px0_A Flagellar biosynthesis 94.5 0.078 2.7E-06 47.8 7.1 28 190-217 103-130 (296)
154 2v1u_A Cell division control p 94.4 0.079 2.7E-06 47.3 7.0 27 190-216 42-68 (387)
155 1iy2_A ATP-dependent metallopr 94.4 0.023 7.9E-07 49.8 3.4 27 187-215 70-96 (278)
156 2gza_A Type IV secretion syste 94.4 0.011 3.8E-07 54.7 1.3 30 186-215 169-198 (361)
157 3upu_A ATP-dependent DNA helic 94.3 0.027 9.3E-07 53.4 3.8 45 194-238 47-92 (459)
158 1zu4_A FTSY; GTPase, signal re 94.3 0.062 2.1E-06 49.0 6.1 45 187-232 100-144 (320)
159 3b60_A Lipid A export ATP-bind 94.2 0.019 6.4E-07 56.3 2.6 32 184-215 361-392 (582)
160 3jvv_A Twitching mobility prot 94.2 0.055 1.9E-06 50.2 5.6 28 189-216 120-147 (356)
161 1yqt_A RNAse L inhibitor; ATP- 94.2 0.023 7.7E-07 55.6 3.0 27 188-214 308-334 (538)
162 1kht_A Adenylate kinase; phosp 94.1 0.034 1.1E-06 45.0 3.5 26 191-216 2-27 (192)
163 2wwf_A Thymidilate kinase, put 94.1 0.037 1.3E-06 45.7 3.8 28 189-216 7-34 (212)
164 2qby_A CDC6 homolog 1, cell di 94.1 0.058 2E-06 48.1 5.3 27 190-216 43-69 (386)
165 1jbk_A CLPB protein; beta barr 94.1 0.041 1.4E-06 43.6 3.9 27 190-216 41-67 (195)
166 2rcn_A Probable GTPase ENGC; Y 94.0 0.015 5.2E-07 54.3 1.5 32 183-214 206-237 (358)
167 2pez_A Bifunctional 3'-phospho 94.0 0.034 1.2E-06 45.2 3.4 26 191-216 4-29 (179)
168 2p67_A LAO/AO transport system 94.0 0.065 2.2E-06 48.9 5.6 31 187-217 51-81 (341)
169 2f9l_A RAB11B, member RAS onco 94.0 0.033 1.1E-06 45.8 3.3 22 194-215 7-28 (199)
170 2yl4_A ATP-binding cassette SU 94.0 0.019 6.5E-07 56.4 2.1 31 184-214 362-392 (595)
171 3cmu_A Protein RECA, recombina 94.0 0.028 9.5E-07 63.0 3.6 54 173-227 361-417 (2050)
172 3iij_A Coilin-interacting nucl 94.0 0.041 1.4E-06 44.6 3.8 26 190-215 9-34 (180)
173 3kb2_A SPBC2 prophage-derived 93.9 0.034 1.2E-06 44.1 3.2 22 194-215 3-24 (173)
174 1in4_A RUVB, holliday junction 93.9 0.035 1.2E-06 50.3 3.5 23 193-215 52-74 (334)
175 1fnn_A CDC6P, cell division co 93.9 0.11 3.7E-06 46.6 6.8 50 191-242 41-93 (389)
176 3fb4_A Adenylate kinase; psych 93.9 0.04 1.4E-06 46.0 3.7 22 194-215 2-23 (216)
177 3ozx_A RNAse L inhibitor; ATP 93.9 0.024 8.1E-07 55.6 2.5 28 187-214 289-316 (538)
178 4eaq_A DTMP kinase, thymidylat 93.9 0.091 3.1E-06 45.3 6.0 34 183-216 16-50 (229)
179 1oix_A RAS-related protein RAB 93.9 0.033 1.1E-06 45.7 3.1 22 194-215 31-52 (191)
180 2www_A Methylmalonic aciduria 93.8 0.073 2.5E-06 48.9 5.6 26 191-216 73-98 (349)
181 3bk7_A ABC transporter ATP-bin 93.8 0.029 9.8E-07 55.8 3.0 27 188-214 378-404 (607)
182 2pbr_A DTMP kinase, thymidylat 93.8 0.15 5.2E-06 41.1 6.9 23 194-216 2-24 (195)
183 2yvu_A Probable adenylyl-sulfa 93.8 0.098 3.4E-06 42.6 5.8 33 184-216 5-37 (186)
184 3qf4_B Uncharacterized ABC tra 93.8 0.026 8.9E-07 55.6 2.6 30 185-214 374-403 (598)
185 3dl0_A Adenylate kinase; phosp 93.7 0.042 1.4E-06 45.9 3.5 22 194-215 2-23 (216)
186 2if2_A Dephospho-COA kinase; a 93.7 0.037 1.3E-06 45.7 3.1 21 194-214 3-23 (204)
187 4a82_A Cystic fibrosis transme 93.7 0.02 6.9E-07 56.1 1.6 31 184-214 359-389 (578)
188 3nwj_A ATSK2; P loop, shikimat 93.6 0.025 8.4E-07 50.0 2.0 31 185-215 38-71 (250)
189 2w58_A DNAI, primosome compone 93.6 0.092 3.1E-06 43.2 5.4 24 193-216 55-78 (202)
190 2wji_A Ferrous iron transport 93.6 0.042 1.4E-06 43.7 3.1 22 193-214 4-25 (165)
191 2pt7_A CAG-ALFA; ATPase, prote 93.5 0.015 5E-07 53.4 0.4 29 187-215 166-194 (330)
192 2qag_B Septin-6, protein NEDD5 93.5 0.035 1.2E-06 53.1 3.0 29 186-214 34-64 (427)
193 2vp4_A Deoxynucleoside kinase; 93.5 0.029 1E-06 48.0 2.2 27 188-214 16-42 (230)
194 2plr_A DTMP kinase, probable t 93.5 0.052 1.8E-06 44.6 3.6 26 191-216 3-28 (213)
195 2iw3_A Elongation factor 3A; a 93.5 0.036 1.2E-06 58.2 3.1 31 184-214 453-483 (986)
196 2orw_A Thymidine kinase; TMTK, 93.4 0.093 3.2E-06 43.7 5.1 27 191-217 2-28 (184)
197 1p9r_A General secretion pathw 93.4 0.071 2.4E-06 50.6 4.9 27 190-216 165-191 (418)
198 1odf_A YGR205W, hypothetical 3 93.4 0.048 1.6E-06 49.1 3.6 28 189-216 28-55 (290)
199 2v54_A DTMP kinase, thymidylat 93.4 0.054 1.8E-06 44.5 3.6 25 191-215 3-27 (204)
200 2zej_A Dardarin, leucine-rich 93.4 0.038 1.3E-06 44.8 2.6 21 194-214 4-24 (184)
201 1r8s_A ADP-ribosylation factor 93.4 0.056 1.9E-06 42.2 3.5 22 194-215 2-23 (164)
202 2p65_A Hypothetical protein PF 93.4 0.05 1.7E-06 43.2 3.2 27 190-216 41-67 (187)
203 3qf4_A ABC transporter, ATP-bi 93.4 0.028 9.7E-07 55.3 2.1 30 185-214 362-391 (587)
204 3trf_A Shikimate kinase, SK; a 93.3 0.055 1.9E-06 43.9 3.5 24 192-215 5-28 (185)
205 2dyk_A GTP-binding protein; GT 93.3 0.053 1.8E-06 42.1 3.3 22 194-215 3-24 (161)
206 2jaq_A Deoxyguanosine kinase; 93.3 0.053 1.8E-06 44.2 3.4 23 194-216 2-24 (205)
207 1z2a_A RAS-related protein RAB 93.3 0.055 1.9E-06 42.2 3.3 22 194-215 7-28 (168)
208 1jjv_A Dephospho-COA kinase; P 93.3 0.049 1.7E-06 45.2 3.1 21 194-214 4-24 (206)
209 1kao_A RAP2A; GTP-binding prot 93.2 0.057 2E-06 41.8 3.3 22 194-215 5-26 (167)
210 1svm_A Large T antigen; AAA+ f 93.2 0.044 1.5E-06 51.4 3.0 29 187-215 164-192 (377)
211 1tev_A UMP-CMP kinase; ploop, 93.2 0.061 2.1E-06 43.4 3.5 25 191-215 2-26 (196)
212 1zuh_A Shikimate kinase; alpha 93.1 0.059 2E-06 43.2 3.4 23 193-215 8-30 (168)
213 2wjg_A FEOB, ferrous iron tran 93.1 0.054 1.9E-06 43.5 3.1 22 193-214 8-29 (188)
214 1qhx_A CPT, protein (chloramph 93.1 0.066 2.3E-06 43.0 3.6 24 192-215 3-26 (178)
215 2nzj_A GTP-binding protein REM 93.1 0.057 2E-06 42.5 3.1 22 194-215 6-27 (175)
216 2ce2_X GTPase HRAS; signaling 93.0 0.058 2E-06 41.6 3.1 22 194-215 5-26 (166)
217 2c95_A Adenylate kinase 1; tra 93.0 0.066 2.3E-06 43.5 3.5 26 190-215 7-32 (196)
218 3lw7_A Adenylate kinase relate 93.0 0.051 1.7E-06 42.7 2.7 19 194-212 3-21 (179)
219 1u8z_A RAS-related protein RAL 93.0 0.065 2.2E-06 41.5 3.3 22 194-215 6-27 (168)
220 3sop_A Neuronal-specific septi 93.0 0.052 1.8E-06 48.2 3.0 22 194-215 4-25 (270)
221 2f1r_A Molybdopterin-guanine d 93.0 0.037 1.3E-06 46.1 1.9 24 193-216 3-26 (171)
222 3ozx_A RNAse L inhibitor; ATP 92.9 0.053 1.8E-06 53.1 3.2 29 186-214 19-47 (538)
223 1zd8_A GTP:AMP phosphotransfer 92.9 0.064 2.2E-06 45.4 3.4 26 190-215 5-30 (227)
224 3ux8_A Excinuclease ABC, A sub 92.9 0.038 1.3E-06 55.0 2.3 25 185-209 37-61 (670)
225 1c1y_A RAS-related protein RAP 92.9 0.068 2.3E-06 41.6 3.3 22 194-215 5-26 (167)
226 1z08_A RAS-related protein RAB 92.9 0.068 2.3E-06 41.8 3.3 22 194-215 8-29 (170)
227 4f4c_A Multidrug resistance pr 92.8 0.028 9.5E-07 60.5 1.2 32 184-215 1097-1128(1321)
228 1ek0_A Protein (GTP-binding pr 92.8 0.07 2.4E-06 41.5 3.3 22 194-215 5-26 (170)
229 3kta_A Chromosome segregation 92.8 0.053 1.8E-06 43.9 2.6 29 185-214 20-48 (182)
230 3t61_A Gluconokinase; PSI-biol 92.7 0.071 2.4E-06 44.1 3.4 23 193-215 19-41 (202)
231 2rhm_A Putative kinase; P-loop 92.7 0.079 2.7E-06 42.9 3.6 26 190-215 3-28 (193)
232 1ukz_A Uridylate kinase; trans 92.7 0.093 3.2E-06 43.2 4.1 25 191-215 14-38 (203)
233 1r2q_A RAS-related protein RAB 92.7 0.075 2.6E-06 41.4 3.3 22 194-215 8-29 (170)
234 3pfi_A Holliday junction ATP-d 92.7 0.076 2.6E-06 47.4 3.8 22 194-215 57-78 (338)
235 2bwj_A Adenylate kinase 5; pho 92.7 0.068 2.3E-06 43.6 3.2 25 191-215 11-35 (199)
236 1aky_A Adenylate kinase; ATP:A 92.7 0.083 2.8E-06 44.4 3.8 25 191-215 3-27 (220)
237 1ky3_A GTP-binding protein YPT 92.7 0.075 2.6E-06 42.0 3.3 22 194-215 10-31 (182)
238 3q85_A GTP-binding protein REM 92.7 0.071 2.4E-06 41.8 3.1 20 194-213 4-23 (169)
239 1g16_A RAS-related protein SEC 92.6 0.07 2.4E-06 41.6 3.1 22 194-215 5-26 (170)
240 2iyv_A Shikimate kinase, SK; t 92.6 0.072 2.5E-06 43.2 3.2 23 193-215 3-25 (184)
241 1z0j_A RAB-22, RAS-related pro 92.6 0.079 2.7E-06 41.3 3.3 22 194-215 8-29 (170)
242 1ly1_A Polynucleotide kinase; 92.6 0.072 2.5E-06 42.5 3.1 21 194-214 4-24 (181)
243 1q3t_A Cytidylate kinase; nucl 92.6 0.081 2.8E-06 45.2 3.6 25 190-214 14-38 (236)
244 1wms_A RAB-9, RAB9, RAS-relate 92.5 0.079 2.7E-06 41.8 3.3 22 194-215 9-30 (177)
245 2erx_A GTP-binding protein DI- 92.5 0.075 2.6E-06 41.4 3.1 23 193-215 4-26 (172)
246 2ged_A SR-beta, signal recogni 92.5 0.079 2.7E-06 42.8 3.3 23 193-215 49-71 (193)
247 3bc1_A RAS-related protein RAB 92.5 0.08 2.7E-06 42.2 3.3 22 194-215 13-34 (195)
248 1w5s_A Origin recognition comp 92.5 0.23 8E-06 44.9 6.8 26 191-216 49-76 (412)
249 1ls1_A Signal recognition part 92.5 0.3 1E-05 43.7 7.4 41 191-232 97-137 (295)
250 3h4m_A Proteasome-activating n 92.4 0.095 3.2E-06 45.5 3.9 26 190-215 49-74 (285)
251 3tlx_A Adenylate kinase 2; str 92.4 0.092 3.1E-06 45.4 3.8 25 191-215 28-52 (243)
252 2cdn_A Adenylate kinase; phosp 92.4 0.09 3.1E-06 43.4 3.6 26 190-215 18-43 (201)
253 2fn4_A P23, RAS-related protei 92.4 0.078 2.7E-06 41.8 3.1 23 193-215 10-32 (181)
254 3ihw_A Centg3; RAS, centaurin, 92.4 0.083 2.8E-06 43.0 3.3 22 194-215 22-43 (184)
255 2vli_A Antibiotic resistance p 92.4 0.068 2.3E-06 43.0 2.7 25 191-215 4-28 (183)
256 1upt_A ARL1, ADP-ribosylation 92.3 0.088 3E-06 41.2 3.3 25 191-215 6-30 (171)
257 2z4s_A Chromosomal replication 92.3 0.12 4.1E-06 48.9 4.8 26 192-217 130-155 (440)
258 3ux8_A Excinuclease ABC, A sub 92.3 0.051 1.7E-06 54.1 2.3 29 185-213 341-369 (670)
259 3q72_A GTP-binding protein RAD 92.3 0.072 2.4E-06 41.6 2.7 20 194-213 4-23 (166)
260 1mh1_A RAC1; GTP-binding, GTPa 92.3 0.072 2.5E-06 42.3 2.8 22 194-215 7-28 (186)
261 4dsu_A GTPase KRAS, isoform 2B 92.3 0.088 3E-06 41.9 3.3 22 194-215 6-27 (189)
262 1nks_A Adenylate kinase; therm 92.3 0.085 2.9E-06 42.5 3.2 23 194-216 3-25 (194)
263 2iw3_A Elongation factor 3A; a 92.3 0.043 1.5E-06 57.6 1.8 31 184-214 691-721 (986)
264 3cf0_A Transitional endoplasmi 92.3 0.089 3E-06 46.8 3.6 26 190-215 47-72 (301)
265 3clv_A RAB5 protein, putative; 92.2 0.09 3.1E-06 42.0 3.3 23 193-215 8-30 (208)
266 1via_A Shikimate kinase; struc 92.2 0.087 3E-06 42.5 3.2 22 194-215 6-27 (175)
267 2oap_1 GSPE-2, type II secreti 92.2 0.031 1.1E-06 54.4 0.5 29 187-215 255-283 (511)
268 1ni3_A YCHF GTPase, YCHF GTP-b 92.2 0.094 3.2E-06 49.4 3.8 29 186-214 14-42 (392)
269 1z0f_A RAB14, member RAS oncog 92.2 0.094 3.2E-06 41.2 3.3 22 194-215 17-38 (179)
270 3cr8_A Sulfate adenylyltranfer 92.2 0.055 1.9E-06 53.3 2.2 29 188-216 365-393 (552)
271 2hxs_A RAB-26, RAS-related pro 92.1 0.073 2.5E-06 42.1 2.6 22 194-215 8-29 (178)
272 3con_A GTPase NRAS; structural 92.1 0.095 3.3E-06 42.1 3.3 22 194-215 23-44 (190)
273 1m2o_B GTP-binding protein SAR 92.1 0.089 3.1E-06 43.0 3.2 24 191-214 22-45 (190)
274 3be4_A Adenylate kinase; malar 92.1 0.098 3.3E-06 44.1 3.5 26 191-216 4-29 (217)
275 2cxx_A Probable GTP-binding pr 92.1 0.082 2.8E-06 42.2 2.8 22 194-215 3-24 (190)
276 1njg_A DNA polymerase III subu 92.1 0.1 3.4E-06 42.6 3.5 23 194-216 47-69 (250)
277 1uf9_A TT1252 protein; P-loop, 92.1 0.096 3.3E-06 42.8 3.3 23 192-214 8-30 (203)
278 2a9k_A RAS-related protein RAL 92.1 0.099 3.4E-06 41.4 3.3 22 194-215 20-41 (187)
279 1tq4_A IIGP1, interferon-induc 92.1 0.051 1.7E-06 51.6 1.8 21 194-214 71-91 (413)
280 2y8e_A RAB-protein 6, GH09086P 92.0 0.092 3.1E-06 41.3 3.1 22 194-215 16-37 (179)
281 3dz8_A RAS-related protein RAB 92.0 0.096 3.3E-06 42.5 3.3 22 194-215 25-46 (191)
282 2efe_B Small GTP-binding prote 92.0 0.1 3.4E-06 41.4 3.3 22 194-215 14-35 (181)
283 1l8q_A Chromosomal replication 92.0 0.17 5.9E-06 45.0 5.2 26 191-216 36-61 (324)
284 2oil_A CATX-8, RAS-related pro 92.0 0.1 3.5E-06 42.2 3.3 22 194-215 27-48 (193)
285 3euj_A Chromosome partition pr 91.9 0.088 3E-06 51.1 3.4 31 184-215 22-52 (483)
286 2pt5_A Shikimate kinase, SK; a 91.9 0.1 3.6E-06 41.4 3.3 22 194-215 2-23 (168)
287 3pqc_A Probable GTP-binding pr 91.9 0.087 3E-06 42.2 2.8 22 194-215 25-46 (195)
288 2iwr_A Centaurin gamma 1; ANK 91.9 0.08 2.7E-06 42.0 2.6 23 193-215 8-30 (178)
289 1m7g_A Adenylylsulfate kinase; 91.9 0.11 3.9E-06 43.4 3.7 28 189-216 22-49 (211)
290 2p5t_B PEZT; postsegregational 91.9 0.075 2.6E-06 46.1 2.6 28 188-215 28-55 (253)
291 2lkc_A Translation initiation 91.8 0.1 3.4E-06 41.3 3.1 24 191-214 7-30 (178)
292 3bwd_D RAC-like GTP-binding pr 91.8 0.11 3.7E-06 41.2 3.3 23 193-215 9-31 (182)
293 1m7b_A RND3/RHOE small GTP-bin 91.8 0.098 3.4E-06 42.1 3.1 22 194-215 9-30 (184)
294 3kkq_A RAS-related protein M-R 91.8 0.11 3.7E-06 41.4 3.3 22 194-215 20-41 (183)
295 1lv7_A FTSH; alpha/beta domain 91.8 0.093 3.2E-06 45.1 3.1 21 195-215 48-68 (257)
296 2g6b_A RAS-related protein RAB 91.8 0.11 3.8E-06 41.1 3.3 22 194-215 12-33 (180)
297 3b9p_A CG5977-PA, isoform A; A 91.8 0.11 3.7E-06 45.5 3.6 25 191-215 53-77 (297)
298 3g5u_A MCG1178, multidrug resi 91.8 0.066 2.3E-06 57.5 2.5 31 184-214 1051-1081(1284)
299 4ag6_A VIRB4 ATPase, type IV s 91.8 0.2 6.7E-06 46.1 5.4 48 191-243 34-82 (392)
300 3tw8_B RAS-related protein RAB 91.8 0.098 3.4E-06 41.2 2.9 21 194-214 11-31 (181)
301 2qby_B CDC6 homolog 3, cell di 91.7 0.21 7.3E-06 44.8 5.5 27 190-216 43-69 (384)
302 2bme_A RAB4A, RAS-related prot 91.7 0.1 3.5E-06 41.6 3.1 22 194-215 12-33 (186)
303 3tkl_A RAS-related protein RAB 91.7 0.11 3.9E-06 41.7 3.3 22 194-215 18-39 (196)
304 2bov_A RAla, RAS-related prote 91.7 0.11 3.9E-06 42.1 3.3 22 194-215 16-37 (206)
305 3c5c_A RAS-like protein 12; GD 91.6 0.11 3.9E-06 42.1 3.3 22 194-215 23-44 (187)
306 3t5g_A GTP-binding protein RHE 91.6 0.087 3E-06 41.9 2.6 22 194-215 8-29 (181)
307 2fna_A Conserved hypothetical 91.6 0.21 7.3E-06 43.8 5.3 24 193-216 31-54 (357)
308 3r20_A Cytidylate kinase; stru 91.6 0.12 4.1E-06 45.2 3.6 23 193-215 10-32 (233)
309 3j16_B RLI1P; ribosome recycli 91.6 0.098 3.4E-06 52.0 3.4 30 185-214 366-400 (608)
310 1zak_A Adenylate kinase; ATP:A 91.6 0.11 3.9E-06 43.6 3.3 25 191-215 4-28 (222)
311 3sr0_A Adenylate kinase; phosp 91.6 0.13 4.4E-06 43.9 3.7 23 194-216 2-24 (206)
312 1svi_A GTP-binding protein YSX 91.6 0.1 3.4E-06 42.1 2.8 24 192-215 23-46 (195)
313 2qgz_A Helicase loader, putati 91.5 0.23 7.9E-06 44.7 5.5 27 191-217 151-177 (308)
314 1e6c_A Shikimate kinase; phosp 91.5 0.11 3.7E-06 41.4 3.0 23 193-215 3-25 (173)
315 1e4v_A Adenylate kinase; trans 91.5 0.11 3.7E-06 43.6 3.1 22 194-215 2-23 (214)
316 1vg8_A RAS-related protein RAB 91.5 0.12 4.1E-06 42.1 3.3 22 194-215 10-31 (207)
317 1j8m_F SRP54, signal recogniti 91.5 0.44 1.5E-05 42.8 7.3 47 190-237 96-142 (297)
318 1ex7_A Guanylate kinase; subst 91.5 0.12 4E-06 43.7 3.3 21 195-215 4-24 (186)
319 2gf9_A RAS-related protein RAB 91.5 0.12 4.2E-06 41.6 3.3 22 194-215 24-45 (189)
320 3t15_A Ribulose bisphosphate c 91.4 0.097 3.3E-06 46.6 2.9 21 195-215 39-59 (293)
321 3tqc_A Pantothenate kinase; bi 91.4 0.1 3.5E-06 47.8 3.1 22 194-215 94-115 (321)
322 1z06_A RAS-related protein RAB 91.4 0.12 4.3E-06 41.6 3.3 22 194-215 22-43 (189)
323 1ak2_A Adenylate kinase isoenz 91.4 0.15 5E-06 43.5 3.9 26 191-216 15-40 (233)
324 1nrj_B SR-beta, signal recogni 91.4 0.12 4.2E-06 42.6 3.3 23 193-215 13-35 (218)
325 4b4t_J 26S protease regulatory 91.4 0.18 6.1E-06 47.9 4.7 46 195-245 185-239 (405)
326 3gmt_A Adenylate kinase; ssgci 91.4 0.13 4.6E-06 45.1 3.6 24 193-216 9-32 (230)
327 2cjw_A GTP-binding protein GEM 91.4 0.13 4.6E-06 42.1 3.5 21 194-214 8-28 (192)
328 2qz4_A Paraplegin; AAA+, SPG7, 91.3 0.11 3.9E-06 44.1 3.1 24 192-215 39-62 (262)
329 4b4t_K 26S protease regulatory 91.3 0.2 6.7E-06 47.8 5.0 47 195-244 209-262 (428)
330 1xjc_A MOBB protein homolog; s 91.3 0.27 9.1E-06 41.0 5.2 23 194-216 6-28 (169)
331 1qf9_A UMP/CMP kinase, protein 91.2 0.16 5.5E-06 40.8 3.8 24 192-215 6-29 (194)
332 1zd9_A ADP-ribosylation factor 91.2 0.13 4.6E-06 41.6 3.3 22 194-215 24-45 (188)
333 3pvs_A Replication-associated 91.2 0.25 8.5E-06 47.1 5.6 49 193-244 51-99 (447)
334 2b8t_A Thymidine kinase; deoxy 91.2 0.27 9.1E-06 42.7 5.4 28 190-217 10-37 (223)
335 2atv_A RERG, RAS-like estrogen 91.2 0.13 4.5E-06 41.8 3.3 36 179-215 16-51 (196)
336 4b4t_M 26S protease regulatory 91.2 0.2 6.7E-06 48.0 4.9 22 194-215 217-238 (434)
337 1uj2_A Uridine-cytidine kinase 91.2 0.13 4.3E-06 44.5 3.3 23 193-215 23-45 (252)
338 3reg_A RHO-like small GTPase; 91.2 0.14 4.6E-06 41.6 3.3 22 194-215 25-46 (194)
339 2a5j_A RAS-related protein RAB 91.2 0.14 4.6E-06 41.5 3.3 22 194-215 23-44 (191)
340 3g5u_A MCG1178, multidrug resi 91.2 0.084 2.9E-06 56.7 2.6 31 184-214 408-438 (1284)
341 2fh5_B SR-beta, signal recogni 91.2 0.13 4.6E-06 42.3 3.3 23 193-215 8-30 (214)
342 3syl_A Protein CBBX; photosynt 91.2 0.15 5.2E-06 44.6 3.9 26 191-216 66-91 (309)
343 2fg5_A RAB-22B, RAS-related pr 91.2 0.12 4.2E-06 41.9 3.1 22 194-215 25-46 (192)
344 1x3s_A RAS-related protein RAB 91.1 0.14 4.8E-06 41.0 3.3 22 194-215 17-38 (195)
345 2r62_A Cell division protease 91.1 0.11 3.7E-06 44.7 2.8 21 195-215 47-67 (268)
346 3n70_A Transport activator; si 91.1 0.14 4.9E-06 40.4 3.2 24 191-214 23-46 (145)
347 2ze6_A Isopentenyl transferase 91.1 0.13 4.4E-06 44.8 3.3 21 195-215 4-24 (253)
348 2hf9_A Probable hydrogenase ni 91.1 0.13 4.6E-06 42.7 3.3 24 193-216 39-62 (226)
349 3lxx_A GTPase IMAP family memb 91.1 0.13 4.3E-06 43.8 3.1 21 194-214 31-51 (239)
350 2p5s_A RAS and EF-hand domain 91.0 0.14 4.9E-06 41.7 3.3 22 194-215 30-51 (199)
351 2gf0_A GTP-binding protein DI- 90.9 0.14 4.7E-06 41.3 3.1 23 193-215 9-31 (199)
352 3oes_A GTPase rhebl1; small GT 90.9 0.14 4.6E-06 42.0 3.1 24 192-215 24-47 (201)
353 1fzq_A ADP-ribosylation factor 90.9 0.12 4.1E-06 41.7 2.7 23 192-214 16-38 (181)
354 3kl4_A SRP54, signal recogniti 90.9 0.54 1.8E-05 44.9 7.6 40 190-230 95-134 (433)
355 2qnr_A Septin-2, protein NEDD5 90.9 0.11 3.7E-06 46.7 2.6 21 194-214 20-40 (301)
356 1zbd_A Rabphilin-3A; G protein 90.9 0.14 4.9E-06 41.6 3.1 22 194-215 10-31 (203)
357 2grj_A Dephospho-COA kinase; T 90.8 0.16 5.4E-06 42.8 3.5 23 193-215 13-35 (192)
358 1np6_A Molybdopterin-guanine d 90.8 0.29 9.9E-06 40.7 5.0 24 193-216 7-30 (174)
359 3te6_A Regulatory protein SIR3 90.8 0.55 1.9E-05 42.9 7.3 28 189-216 42-69 (318)
360 4edh_A DTMP kinase, thymidylat 90.8 0.56 1.9E-05 40.0 7.0 55 191-247 5-59 (213)
361 4bas_A ADP-ribosylation factor 90.8 0.14 4.7E-06 41.3 2.9 21 194-214 19-39 (199)
362 2h17_A ADP-ribosylation factor 90.8 0.12 4.2E-06 41.4 2.6 22 194-215 23-44 (181)
363 3v9p_A DTMP kinase, thymidylat 90.7 0.43 1.5E-05 41.4 6.3 58 190-247 23-82 (227)
364 3ake_A Cytidylate kinase; CMP 90.7 0.16 5.5E-06 41.6 3.3 22 194-215 4-25 (208)
365 1vht_A Dephospho-COA kinase; s 90.7 0.17 5.9E-06 42.2 3.6 23 192-214 4-26 (218)
366 2ew1_A RAS-related protein RAB 90.6 0.15 5E-06 42.4 3.1 22 194-215 28-49 (201)
367 3p32_A Probable GTPase RV1496/ 90.6 0.35 1.2E-05 44.1 5.9 28 190-217 77-104 (355)
368 2bcg_Y Protein YP2, GTP-bindin 90.6 0.15 5.2E-06 41.7 3.1 22 194-215 10-31 (206)
369 1gtv_A TMK, thymidylate kinase 90.6 0.084 2.9E-06 43.6 1.5 23 194-216 2-24 (214)
370 1moz_A ARL1, ADP-ribosylation 90.6 0.1 3.4E-06 41.5 1.9 25 190-214 16-40 (183)
371 3t1o_A Gliding protein MGLA; G 90.6 0.17 5.8E-06 40.4 3.3 20 194-213 16-35 (198)
372 3m6a_A ATP-dependent protease 90.5 0.15 5.3E-06 49.6 3.6 25 191-215 107-131 (543)
373 2q3h_A RAS homolog gene family 90.5 0.13 4.3E-06 41.9 2.5 23 193-215 21-43 (201)
374 2fu5_C RAS-related protein RAB 90.5 0.09 3.1E-06 41.9 1.6 22 194-215 10-31 (183)
375 1f6b_A SAR1; gtpases, N-termin 90.5 0.12 4.1E-06 42.5 2.4 23 192-214 25-47 (198)
376 4gzl_A RAS-related C3 botulinu 90.5 0.13 4.3E-06 42.5 2.6 25 191-215 29-53 (204)
377 2atx_A Small GTP binding prote 90.5 0.16 5.3E-06 41.1 3.1 22 194-215 20-41 (194)
378 3uk6_A RUVB-like 2; hexameric 90.5 0.16 5.5E-06 45.6 3.4 25 192-216 70-94 (368)
379 1ksh_A ARF-like protein 2; sma 90.5 0.15 5.2E-06 40.8 3.0 25 190-214 16-40 (186)
380 1zj6_A ADP-ribosylation factor 90.5 0.15 5.1E-06 41.0 2.9 24 191-214 15-38 (187)
381 3cph_A RAS-related protein SEC 90.4 0.17 5.9E-06 41.3 3.3 23 193-215 21-43 (213)
382 1ega_A Protein (GTP-binding pr 90.4 0.13 4.4E-06 46.1 2.7 25 191-215 7-31 (301)
383 4b3f_X DNA-binding protein smu 90.4 0.33 1.1E-05 47.9 5.9 50 195-247 208-257 (646)
384 2qmh_A HPR kinase/phosphorylas 90.4 0.14 4.7E-06 44.5 2.7 25 191-215 33-57 (205)
385 2f7s_A C25KG, RAS-related prot 90.3 0.17 5.7E-06 41.8 3.1 21 194-214 27-47 (217)
386 4f4c_A Multidrug resistance pr 90.3 0.1 3.4E-06 56.2 2.2 31 185-215 437-467 (1321)
387 2o52_A RAS-related protein RAB 90.3 0.16 5.3E-06 41.8 2.9 22 194-215 27-48 (200)
388 1gvn_B Zeta; postsegregational 90.3 0.19 6.4E-06 44.8 3.6 28 188-215 29-56 (287)
389 1gwn_A RHO-related GTP-binding 90.3 0.17 5.6E-06 42.2 3.1 22 194-215 30-51 (205)
390 3cbq_A GTP-binding protein REM 90.3 0.13 4.5E-06 42.3 2.4 20 194-213 25-44 (195)
391 4dkx_A RAS-related protein RAB 90.3 0.15 5E-06 43.6 2.8 22 194-215 15-36 (216)
392 2fv8_A H6, RHO-related GTP-bin 90.3 0.17 5.7E-06 41.7 3.1 22 194-215 27-48 (207)
393 1d2n_A N-ethylmaleimide-sensit 90.2 0.17 5.9E-06 43.8 3.3 25 191-215 63-87 (272)
394 1xwi_A SKD1 protein; VPS4B, AA 90.2 0.15 5.3E-06 45.9 3.1 24 192-215 45-68 (322)
395 1ofh_A ATP-dependent HSL prote 90.2 0.18 6.1E-06 43.8 3.3 26 191-216 49-74 (310)
396 4fcw_A Chaperone protein CLPB; 90.1 0.25 8.4E-06 43.2 4.2 24 193-216 48-71 (311)
397 3eie_A Vacuolar protein sortin 90.1 0.16 5.5E-06 45.5 3.1 23 193-215 52-74 (322)
398 3e1s_A Exodeoxyribonuclease V, 90.1 0.29 9.8E-06 48.1 5.1 40 191-230 203-242 (574)
399 4b4t_L 26S protease subunit RP 90.0 0.3 1E-05 46.7 5.0 22 194-215 217-238 (437)
400 2xb4_A Adenylate kinase; ATP-b 90.0 0.2 6.9E-06 42.4 3.5 22 194-215 2-23 (223)
401 2r8r_A Sensor protein; KDPD, P 90.0 0.43 1.5E-05 41.9 5.6 49 194-243 8-57 (228)
402 2il1_A RAB12; G-protein, GDP, 90.0 0.18 6E-06 41.0 3.0 22 194-215 28-49 (192)
403 2gco_A H9, RHO-related GTP-bin 89.8 0.19 6.5E-06 41.2 3.1 22 194-215 27-48 (201)
404 3q3j_B RHO-related GTP-binding 89.8 0.2 7E-06 41.7 3.3 22 194-215 29-50 (214)
405 4b4t_I 26S protease regulatory 89.8 0.32 1.1E-05 46.6 5.0 48 195-245 219-273 (437)
406 2j0v_A RAC-like GTP-binding pr 89.7 0.2 6.7E-06 41.2 3.1 23 193-215 10-32 (212)
407 3k53_A Ferrous iron transport 89.7 0.17 5.9E-06 44.1 2.8 21 194-214 5-25 (271)
408 2dhr_A FTSH; AAA+ protein, hex 89.7 0.19 6.4E-06 48.8 3.4 26 188-215 62-87 (499)
409 1sxj_E Activator 1 40 kDa subu 89.7 0.17 6E-06 45.1 2.9 27 189-215 33-59 (354)
410 2h57_A ADP-ribosylation factor 89.6 0.15 5.1E-06 41.2 2.2 23 193-215 22-44 (190)
411 2hup_A RAS-related protein RAB 89.6 0.2 6.9E-06 41.1 3.1 22 194-215 31-52 (201)
412 2b6h_A ADP-ribosylation factor 89.5 0.18 6.3E-06 41.1 2.7 24 191-214 28-51 (192)
413 1e9r_A Conjugal transfer prote 89.4 0.32 1.1E-05 45.2 4.6 27 192-218 53-79 (437)
414 2j1l_A RHO-related GTP-binding 89.4 0.2 6.8E-06 41.6 2.9 23 193-215 35-57 (214)
415 2wsm_A Hydrogenase expression/ 89.4 0.23 7.8E-06 41.1 3.2 24 193-216 31-54 (221)
416 2qen_A Walker-type ATPase; unk 89.3 0.25 8.6E-06 43.3 3.6 24 192-215 31-54 (350)
417 2gk6_A Regulator of nonsense t 89.3 0.42 1.4E-05 47.2 5.6 53 192-247 195-248 (624)
418 2g3y_A GTP-binding protein GEM 89.3 0.22 7.5E-06 42.2 3.1 20 194-213 39-58 (211)
419 1udx_A The GTP-binding protein 89.3 0.15 5E-06 48.4 2.2 32 183-214 148-179 (416)
420 2qu8_A Putative nucleolar GTP- 89.2 0.19 6.4E-06 42.2 2.6 23 193-215 30-52 (228)
421 2r44_A Uncharacterized protein 89.1 0.19 6.4E-06 44.8 2.7 25 191-215 45-69 (331)
422 4b4t_H 26S protease regulatory 89.1 0.35 1.2E-05 46.8 4.7 48 194-244 245-299 (467)
423 2a5y_B CED-4; apoptosis; HET: 89.1 0.42 1.4E-05 46.1 5.4 52 192-243 152-207 (549)
424 3cpj_B GTP-binding protein YPT 89.1 0.25 8.5E-06 41.2 3.3 22 194-215 15-36 (223)
425 4aby_A DNA repair protein RECN 89.1 0.089 3E-06 48.5 0.5 33 179-212 47-80 (415)
426 2xtp_A GTPase IMAP family memb 89.0 0.22 7.4E-06 42.8 2.9 22 193-214 23-44 (260)
427 3umf_A Adenylate kinase; rossm 89.0 0.26 9E-06 42.5 3.4 26 191-216 28-53 (217)
428 2yc2_C IFT27, small RAB-relate 88.9 0.1 3.5E-06 42.3 0.7 23 193-215 21-43 (208)
429 3u61_B DNA polymerase accessor 88.9 0.78 2.7E-05 40.5 6.6 50 194-246 49-99 (324)
430 2ffh_A Protein (FFH); SRP54, s 88.8 0.49 1.7E-05 45.0 5.5 28 191-218 97-124 (425)
431 3a4m_A L-seryl-tRNA(SEC) kinas 88.8 0.27 9.2E-06 42.8 3.4 25 191-215 3-27 (260)
432 3lv8_A DTMP kinase, thymidylat 88.7 0.82 2.8E-05 39.8 6.5 52 191-244 26-78 (236)
433 3llu_A RAS-related GTP-binding 88.5 0.26 8.8E-06 40.2 2.9 21 194-214 22-42 (196)
434 3gj0_A GTP-binding nuclear pro 88.4 0.15 5E-06 42.4 1.4 22 194-215 17-38 (221)
435 1tue_A Replication protein E1; 88.4 0.27 9.1E-06 42.9 3.0 28 189-216 55-82 (212)
436 1z6t_A APAF-1, apoptotic prote 88.4 0.55 1.9E-05 45.1 5.6 43 190-232 145-190 (591)
437 2ohf_A Protein OLA1, GTP-bindi 88.4 0.29 9.9E-06 46.2 3.6 29 187-215 17-45 (396)
438 3k1j_A LON protease, ATP-depen 88.4 0.26 8.8E-06 48.4 3.3 28 188-215 56-83 (604)
439 3tqf_A HPR(Ser) kinase; transf 88.4 0.28 9.5E-06 41.8 3.1 25 191-215 15-39 (181)
440 2qp9_X Vacuolar protein sortin 88.3 0.26 8.9E-06 45.1 3.1 23 193-215 85-107 (355)
441 1ypw_A Transitional endoplasmi 88.3 0.29 9.8E-06 50.0 3.7 27 188-214 234-260 (806)
442 2x77_A ADP-ribosylation factor 88.3 0.19 6.4E-06 40.4 1.9 24 191-214 21-44 (189)
443 1hqc_A RUVB; extended AAA-ATPa 88.2 0.23 8E-06 43.6 2.6 24 192-215 38-61 (324)
444 2qag_C Septin-7; cell cycle, c 88.1 0.22 7.6E-06 47.2 2.6 20 195-214 34-53 (418)
445 2bjv_A PSP operon transcriptio 88.1 0.29 9.8E-06 42.1 3.1 41 192-233 29-69 (265)
446 2f6r_A COA synthase, bifunctio 88.1 0.26 9E-06 43.6 2.9 21 194-214 77-97 (281)
447 1wb9_A DNA mismatch repair pro 88.0 0.3 1E-05 50.1 3.6 31 184-215 600-630 (800)
448 4dhe_A Probable GTP-binding pr 87.9 0.17 5.8E-06 41.8 1.5 24 192-215 29-52 (223)
449 3hws_A ATP-dependent CLP prote 87.9 0.32 1.1E-05 44.1 3.5 24 192-215 51-74 (363)
450 1sxj_C Activator 1 40 kDa subu 87.9 0.31 1.1E-05 43.8 3.3 22 195-216 49-70 (340)
451 1sxj_D Activator 1 41 kDa subu 87.9 0.29 1E-05 43.3 3.1 24 193-216 59-82 (353)
452 3lxw_A GTPase IMAP family memb 87.9 0.31 1E-05 42.1 3.1 22 193-214 22-43 (247)
453 3d8b_A Fidgetin-like protein 1 87.9 0.31 1E-05 44.5 3.3 24 192-215 117-140 (357)
454 1xx6_A Thymidine kinase; NESG, 87.9 0.72 2.5E-05 38.8 5.4 29 189-217 5-33 (191)
455 2ga8_A Hypothetical 39.9 kDa p 87.8 0.33 1.1E-05 45.4 3.5 27 189-215 19-47 (359)
456 3thx_B DNA mismatch repair pro 87.7 0.27 9.1E-06 51.3 3.1 31 184-214 665-695 (918)
457 3thx_A DNA mismatch repair pro 87.7 0.29 1E-05 51.0 3.4 31 183-213 653-683 (934)
458 1a7j_A Phosphoribulokinase; tr 87.7 0.2 6.9E-06 44.8 1.9 25 191-215 4-28 (290)
459 2ce7_A Cell division protein F 87.6 0.32 1.1E-05 46.9 3.4 25 189-215 48-72 (476)
460 1c9k_A COBU, adenosylcobinamid 87.6 0.38 1.3E-05 40.6 3.5 43 195-242 2-45 (180)
461 3b1v_A Ferrous iron uptake tra 87.5 0.32 1.1E-05 43.0 3.1 22 193-214 4-25 (272)
462 3th5_A RAS-related C3 botulinu 87.3 0.11 3.7E-06 42.6 0.0 25 191-215 29-53 (204)
463 2ocp_A DGK, deoxyguanosine kin 87.4 0.37 1.3E-05 41.0 3.4 25 191-215 1-25 (241)
464 3dm5_A SRP54, signal recogniti 87.2 1.6 5.4E-05 41.8 7.9 29 190-218 98-126 (443)
465 2h92_A Cytidylate kinase; ross 87.2 0.38 1.3E-05 40.0 3.2 24 192-215 3-26 (219)
466 1mky_A Probable GTP-binding pr 87.1 0.34 1.2E-05 45.6 3.1 23 193-215 181-203 (439)
467 1um8_A ATP-dependent CLP prote 87.0 0.34 1.2E-05 44.1 3.1 24 192-215 72-95 (376)
468 3szr_A Interferon-induced GTP- 87.0 0.13 4.4E-06 50.9 0.2 21 194-214 47-67 (608)
469 4tmk_A Protein (thymidylate ki 87.0 1.3 4.3E-05 37.9 6.5 52 191-245 2-55 (213)
470 2zan_A Vacuolar protein sortin 86.8 0.35 1.2E-05 45.7 3.1 23 193-215 168-190 (444)
471 3a1s_A Iron(II) transport prot 86.7 0.38 1.3E-05 42.0 3.1 21 194-214 7-27 (258)
472 4djt_A GTP-binding nuclear pro 86.7 0.31 1.1E-05 40.1 2.4 21 194-214 13-33 (218)
473 1iqp_A RFCS; clamp loader, ext 86.7 0.5 1.7E-05 41.2 3.8 26 191-216 45-70 (327)
474 1g8p_A Magnesium-chelatase 38 86.5 0.25 8.6E-06 43.8 1.8 24 192-215 45-68 (350)
475 1qhl_A Protein (cell division 86.3 0.16 5.4E-06 44.2 0.4 22 193-214 28-49 (227)
476 3d3q_A TRNA delta(2)-isopenten 86.2 0.43 1.5E-05 44.2 3.3 22 194-215 9-30 (340)
477 2c9o_A RUVB-like 1; hexameric 86.2 0.44 1.5E-05 44.9 3.5 26 191-216 62-87 (456)
478 3vfd_A Spastin; ATPase, microt 86.1 0.48 1.7E-05 43.5 3.6 24 192-215 148-171 (389)
479 2aka_B Dynamin-1; fusion prote 86.1 0.4 1.4E-05 41.7 2.9 23 193-215 27-49 (299)
480 2wjy_A Regulator of nonsense t 86.1 0.76 2.6E-05 47.0 5.4 53 192-247 371-424 (800)
481 1wf3_A GTP-binding protein; GT 85.9 0.39 1.3E-05 43.0 2.8 25 191-215 6-30 (301)
482 3co5_A Putative two-component 85.8 0.22 7.6E-06 39.2 1.0 23 192-214 27-49 (143)
483 3i8s_A Ferrous iron transport 85.5 0.44 1.5E-05 41.9 2.9 21 194-214 5-25 (274)
484 2v3c_C SRP54, signal recogniti 85.5 0.54 1.8E-05 44.7 3.7 27 191-217 98-124 (432)
485 1ltq_A Polynucleotide kinase; 85.5 0.47 1.6E-05 41.5 3.1 21 194-214 4-24 (301)
486 1ewq_A DNA mismatch repair pro 85.5 0.45 1.6E-05 48.5 3.3 24 192-215 576-599 (765)
487 3def_A T7I23.11 protein; chlor 85.4 0.45 1.5E-05 41.2 2.9 23 193-215 37-59 (262)
488 3lfu_A DNA helicase II; SF1 he 85.4 0.81 2.8E-05 44.4 5.0 51 192-242 22-76 (647)
489 2ius_A DNA translocase FTSK; n 85.4 0.66 2.2E-05 45.3 4.3 32 186-217 161-192 (512)
490 1ko7_A HPR kinase/phosphatase; 85.4 0.48 1.6E-05 43.4 3.1 40 191-231 143-184 (314)
491 1h65_A Chloroplast outer envel 85.3 0.46 1.6E-05 41.3 2.9 22 194-215 41-62 (270)
492 3iby_A Ferrous iron transport 85.2 0.47 1.6E-05 41.4 2.9 22 194-215 3-24 (256)
493 2chq_A Replication factor C sm 85.2 0.59 2E-05 40.5 3.6 24 193-216 39-62 (319)
494 2dby_A GTP-binding protein; GD 85.2 0.48 1.6E-05 44.1 3.1 23 194-216 3-25 (368)
495 2xzl_A ATP-dependent helicase 85.2 0.88 3E-05 46.5 5.3 53 192-247 375-428 (802)
496 3t5d_A Septin-7; GTP-binding p 85.1 0.45 1.5E-05 41.5 2.7 20 194-213 10-29 (274)
497 1jal_A YCHF protein; nucleotid 85.0 0.58 2E-05 43.6 3.6 24 192-215 2-25 (363)
498 2wkq_A NPH1-1, RAS-related C3 84.7 0.45 1.5E-05 41.6 2.6 25 191-215 154-178 (332)
499 3iev_A GTP-binding protein ERA 84.6 0.54 1.9E-05 42.0 3.1 22 193-214 11-32 (308)
500 1ypw_A Transitional endoplasmi 84.6 0.44 1.5E-05 48.6 2.8 55 189-245 508-568 (806)
No 1
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=100.00 E-value=5.2e-54 Score=417.24 Aligned_cols=216 Identities=86% Similarity=1.271 Sum_probs=202.0
Q ss_pred CccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccC
Q psy17544 50 GKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPV 129 (266)
Q Consensus 50 ~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~Vpv 129 (266)
...+|+|++|.|++|+++|+...|.+++.|++...+..+.+||+++++++.+++++|+++.||++|++|.+||+++++|+
T Consensus 11 ~~~~G~v~~v~G~vv~v~~~~~~~~i~~~~~i~~~~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G~~V~~tg~~~~vpv 90 (482)
T 2ck3_D 11 GATTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPV 90 (482)
T ss_dssp --CEEEEEEEETTEEEEEESSCCCCTTCEEEESSCSSCCEEEEEEEEETTEEEEEESSCCTTCBTTCEEEECSSSCEEEC
T ss_pred CCcceEEEEEEccEEEEEecCccCcccceEEEeeCCCcEEEEEeEEecCCeEEEEeccCccCCCCCCEEEEcCCcceeec
Confidence 34579999999999999998656789999998643346899999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHHH
Q psy17544 130 GAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLI 209 (266)
Q Consensus 130 G~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L~ 209 (266)
|++|||||+|++|+|||+.+++...++||++.+||+|++|.++++||+||||+||+|+|||||||++|||++|+|||+|+
T Consensus 91 G~~lLGRV~d~lG~PiDg~~~~~~~~~~pi~~~~P~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~Ifgg~G~GKT~L~ 170 (482)
T 2ck3_D 91 GPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLI 170 (482)
T ss_dssp SGGGBTCEECTTSCBCSSSCSCCCCCEEESCCCCCCGGGCCCCCCEECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHH
T ss_pred cccccCCEEcccCcCcCCcCCCCccccccccccCCchHHhcccCcCCccceEEEecccccccCCeeeeecCCCCChHHHH
Confidence 99999999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 210 MELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 210 ~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
+++++|++++|++++||++||||+||++||+++|.++++++.++.++|+++|++|+
T Consensus 171 ~~i~~~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~ 226 (482)
T 2ck3_D 171 MELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQM 226 (482)
T ss_dssp HHHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECT
T ss_pred HHHHHhhHhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECC
Confidence 99999987777789999999999999999999999999998777789999999986
No 2
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=100.00 E-value=1.6e-53 Score=415.09 Aligned_cols=213 Identities=58% Similarity=0.962 Sum_probs=199.2
Q ss_pred ccEEEEEECcEEEEEecC-CCcccccEEEEecCC---C--ceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCcc
Q psy17544 53 NGRVVAVIGAVVDVQFDH-DLPPILNALEVEGRS---P--RLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIK 126 (266)
Q Consensus 53 ~GrV~~I~G~vV~v~~~~-~~p~ig~~~~v~~~~---~--~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~ 126 (266)
+|+|++|.|++|+++|+. ..|.+++.|+|...+ . .+.+||+++++++.+++++|++++||++|++|.+||++++
T Consensus 20 ~G~v~~V~G~vv~v~~~~~~~~~i~~~~~i~~~~~~g~~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G~~V~~tg~~~~ 99 (498)
T 1fx0_B 20 LGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLS 99 (498)
T ss_dssp CEEEEEEETTEEEEECCSSCCCCTTCEEEECCCSSSSCCCCCEEEEEECCSSSCEEEEESSCCTTCCTTCEEEECSSSCE
T ss_pred CceEEEEEccEEEEEeCCCCccccccEEEEEeCCCCCcccceEEEEEEEecCCeEEEEEecCccCCCCCCEEEecCCcce
Confidence 699999999999999984 467899999996422 2 5799999999999999999999999999999999999999
Q ss_pred ccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHH
Q psy17544 127 IPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKT 206 (266)
Q Consensus 127 VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT 206 (266)
+|+|++|||||+|++|+|||+.+++..+++|||+.+||+|++|.++++||+||||+||+|+|||||||+|||||+|+|||
T Consensus 100 vpvG~~lLGRV~d~lG~PiD~~~~i~~~~~~pi~~~~p~~~~r~~~~e~l~TGirvID~l~pigkGqr~gIfgg~GvGKT 179 (498)
T 1fx0_B 100 VPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHRSAPAFTQLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGKT 179 (498)
T ss_dssp EEESSTTTTCEECTTSCBCSSSSCCCCSEEEESCCCCCCGGGCCCCCCCCCCSCTTHHHHSCCCTTCCEEEEECSSSSHH
T ss_pred EecCccceeeEEcccccCCCCcCCcCCCceeccccCCCchhhhcccccccccceeEeeeecccccCCeEEeecCCCCCch
Confidence 99999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCC-CceEEEeecc
Q psy17544 207 VLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKS-SKVNFLFNSR 265 (266)
Q Consensus 207 ~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~-~~~~~v~~q~ 265 (266)
+|+++|++|++++|++++||++||||+||++||+++|.++|+++-++.+ +|+++|++|+
T Consensus 180 ~L~~~l~~~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~ 239 (498)
T 1fx0_B 180 VLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQM 239 (498)
T ss_dssp HHHHHHHHHTTTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECT
T ss_pred HHHHHHHHHHHhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCC
Confidence 9999999998877778999999999999999999999999999755544 5999999997
No 3
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=100.00 E-value=3.4e-50 Score=388.80 Aligned_cols=206 Identities=21% Similarity=0.346 Sum_probs=190.1
Q ss_pred ccccEEEEEECcEEEEEecCCCcccccEEEEecCC-CceEEEEeeeeCCceeEEEeccCCCCCC-CCCEEEecCCCcccc
Q psy17544 51 KGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRS-PRLVLEVAQHLGENTVRTIAMDGTEGLV-RGQVVADSGNPIKIP 128 (266)
Q Consensus 51 ~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~-~~l~~EVv~~l~~~~v~l~~~~~t~Gl~-~G~~V~~tg~~~~Vp 128 (266)
+.+|+|++|.|+++++++...+ .+++.|++...+ ..+.+||+++. ++.+.+++|+++.||+ .|++|.+||++++||
T Consensus 10 ~~~g~v~~v~g~~v~v~gl~~~-~~ge~v~i~~~~g~~~~geVv~~~-~~~~~~~~~~~~~gl~~~g~~V~~tg~~~~vp 87 (465)
T 3vr4_D 10 KEYRTIKEVVGPLMAVEKVSGV-KYEELIEVRMQNGEIRRGQVLEVQ-EDKAMVQIFEGTSGINLKNSSVRFLGHPLQLG 87 (465)
T ss_dssp -CBCCEEEEETTEEEEESCCSC-CTTCEEEEECTTSCEEEEEEEEEE-SSEEEEEETTCCTTCCTTTCEEEECSSCCEEE
T ss_pred ceEEEEEEEECCEEEEecCCCC-CcCCEEEEEcCCCCEEEEEEEEEe-CCeEEEEEecCccccccCCCEEEECCCcceee
Confidence 4689999999999999986544 899999996433 35899999965 5799999999999999 999999999999999
Q ss_pred CChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHHH
Q psy17544 129 VGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVL 208 (266)
Q Consensus 129 vG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L 208 (266)
+|++|||||+|++|+|||+.+++..+.++|+++.||+|++|.++++||+||||+||+|+|||||||++|||++|+|||+|
T Consensus 88 vg~~lLGRV~d~lG~PiD~~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifgg~G~GKt~L 167 (465)
T 3vr4_D 88 VSEDMIGRVFDGLGRPKDNGPEILPEKYLDINGEVINPIARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHKEL 167 (465)
T ss_dssp ECGGGTTEEEETTSCBCSCCCCCCCSEEEESSCCCBCTTTEECCCCBCBCSCHHHHTTSCCBTTCBCCEEECTTSCHHHH
T ss_pred cchhhccceeccCCcccCCCCCCcccceeeccCcccCchhccCcccccccCceEEecccccccCCEEEEeCCCCcChHHH
Confidence 99999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCc----EEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 209 IMELINNVAKAHGG----YSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 209 ~~~ii~~~a~~~~~----v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
+++|++ +++++++ ++||++||||+||++||+++|.++|+|+ ||++|++++
T Consensus 168 ~~~Ia~-~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~------rtvvV~ats 221 (465)
T 3vr4_D 168 AAQIAR-QATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAID------RSVMFMNLA 221 (465)
T ss_dssp HHHHHH-HCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGG------GEEEEEEET
T ss_pred HHHHHH-HHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCcc------ceEEEEECC
Confidence 998877 5666444 9999999999999999999999999998 999999986
No 4
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=100.00 E-value=3.6e-50 Score=388.56 Aligned_cols=207 Identities=23% Similarity=0.315 Sum_probs=190.3
Q ss_pred CccccEEEEEECcEEEEEecCCCcccccEEEEecCC-CceEEEEeeeeCCceeEEEeccCCCCCC-CCCEEEecCCCccc
Q psy17544 50 GKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRS-PRLVLEVAQHLGENTVRTIAMDGTEGLV-RGQVVADSGNPIKI 127 (266)
Q Consensus 50 ~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~-~~l~~EVv~~l~~~~v~l~~~~~t~Gl~-~G~~V~~tg~~~~V 127 (266)
.+.+|+|++|.|+++++++...+ .+++.|++...+ ..+.+||+++ +++.+.+++|+++.||+ .|++|.+||++++|
T Consensus 5 ~~~~g~V~~v~g~~v~v~gl~~~-~~ge~v~i~~~~g~~~~geVv~~-~~~~~~~~~~~~~~gl~~~g~~V~~tg~~~~v 82 (464)
T 3gqb_B 5 KKEYTGITYISGPLLFVENAKDL-AYGAIVDIKDGTGRVRGGQVIEV-SEEYAVIQVFEETTGLDLATTSVSLVEDVARL 82 (464)
T ss_dssp CCCBCCEEEEETTEEEEESCTTS-CTTCEEEEECTTSCEEEEEEEEE-ESSEEEEEESSCCTTCCSSSCEEEEEESSCEE
T ss_pred cceeeEEEEEECCEEEEecCCCC-CcCCEEEEEcCCCCEEEEEEEEE-eCCeEEEEEecCccccccCCCEEEECCCCcEE
Confidence 35689999999999999986554 899999996533 3589999996 45799999999999999 99999999999999
Q ss_pred cCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHHH
Q psy17544 128 PVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV 207 (266)
Q Consensus 128 pvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~ 207 (266)
|||++|||||+|++|+|||+.+++..++++||++.||+|++|.++++||+||||+||+|+|||||||++|||++|+|||+
T Consensus 83 pvg~~lLGRV~d~lG~PiD~~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifgg~G~GKt~ 162 (464)
T 3gqb_B 83 GVSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPANE 162 (464)
T ss_dssp EECSTTTTEEEETTCCBCSSSCCCCCSEEEETTCCCBCGGGBCCCCCBCBCSCHHHHTTSCCBTTCBCCEEEETTSCHHH
T ss_pred EeChHhcCCEeccCCcccCCCccccCcceeeccCCCCChhhccCccccccCcceeeecccccccCCEEEEecCCCCCchH
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC-------c----EEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 208 LIMELINNVAKAHG-------G----YSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 208 L~~~ii~~~a~~~~-------~----v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
|+++|++ ++++++ + ++||++||||+||++||+++|.++|+++ |+++|++++
T Consensus 163 L~~~Ia~-~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~------rtvvv~~t~ 224 (464)
T 3gqb_B 163 IAAQIAR-QATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALS------RSVLFLNKA 224 (464)
T ss_dssp HHHHHHH-HCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGG------GEEEEEEET
T ss_pred HHHHHHH-HHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhccccc------ceEEEEECC
Confidence 9998877 455521 2 9999999999999999999999999998 999999986
No 5
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=100.00 E-value=9.2e-50 Score=388.73 Aligned_cols=211 Identities=24% Similarity=0.420 Sum_probs=189.3
Q ss_pred ccccccCCCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEe
Q psy17544 41 HYAAKAAPKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVAD 120 (266)
Q Consensus 41 ~~~~~~~~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~ 120 (266)
+|... +..+.+|+|++|.|.++++++...+ .+++.|++.+ .+.+||+.+ +++.+.+++|+++.||+.|++|.+
T Consensus 18 ~~~~~--~~~~~~G~V~~v~g~i~~v~Gl~~~-~~gElv~~~~---~~~g~v~~l-~~d~v~~~~~~~~~gi~~G~~V~~ 90 (513)
T 3oaa_A 18 QFNVV--SEAHNEGTIVSVSDGVIRIHGLADC-MQGEMISLPG---NRYAIALNL-ERDSVGAVVMGPYADLAEGMKVKC 90 (513)
T ss_dssp --------CCTTEEEEEEEETTEEEEEECTTC-BTTCEEEETT---TEEEEEEEE-CSSCEEEEESSCCSSCCTTCEEEC
T ss_pred hcCCC--CCceeEEEEEEEECcEEEEECCccC-CcCCEEEECC---CCEEEEEEe-eCCEEEEEEeCCccCCCCCCEEEE
Confidence 45442 3466789999999999999998655 8899999953 378999995 678999999999999999999999
Q ss_pred cCCCccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecC
Q psy17544 121 SGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGG 200 (266)
Q Consensus 121 tg~~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg 200 (266)
||++++||||++|||||+|++|+|||+++++....++||+..||+|++|.++++||+||||+||+|+|||||||++|||+
T Consensus 91 tg~~~~VpvG~~lLGRV~d~lG~PiDg~g~i~~~~~~pi~~~ap~~~~R~~v~epl~TGikaID~l~PigrGQR~~Ifg~ 170 (513)
T 3oaa_A 91 TGRILEVPVGRGLLGRVVNTLGAPIDGKGPLDHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGD 170 (513)
T ss_dssp CSCSSEEECSGGGTTCEEETTSCBTTCSCSCCCSCEEESSCCCCCSSSCCCCCCBCCCSCHHHHHHSCCBTTCBCEEEES
T ss_pred cCCCCeEeeCHHHhccchhhcCcCccCCCCCCccceeecccCCCCccccCCcCcccccceeeeccccccccCCEEEeecC
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 201 AGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 201 ~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
+|+|||+|+.+++.|+ +.++.+|||++||||+||++||+++|.+.|+|+ ||++|++++
T Consensus 171 ~g~GKT~l~l~~I~n~-~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~------~tvvV~ata 228 (513)
T 3oaa_A 171 RQTGKTALAIDAIINQ-RDSGIKCIYVAIGQKASTISNVVRKLEEHGALA------NTIVVVATA 228 (513)
T ss_dssp SSSSHHHHHHHHHHTT-SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCST------TEEEEEECT
T ss_pred CCCCcchHHHHHHHhh-ccCCceEEEEEecCChHHHHHHHHHHhhcCccc------ceEEEEECC
Confidence 9999999976566666 344457999999999999999999999999998 999999986
No 6
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=100.00 E-value=3.4e-50 Score=390.05 Aligned_cols=209 Identities=20% Similarity=0.294 Sum_probs=167.9
Q ss_pred CCCccccEEEEEECcEEEEEecCCCcccccEEEEecCC-CceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCcc
Q psy17544 48 PKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRS-PRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIK 126 (266)
Q Consensus 48 ~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~-~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~ 126 (266)
|-.+.+|+|++|.|++++++++.. +.+++.|++...+ ..+.+||+++ .++.+.+++|+++.||++|++|.+||++++
T Consensus 9 ~~~~~~g~V~~V~g~vv~v~g~~~-~~~ge~v~i~~~~g~~~~geV~~~-~~~~v~~~~~~~t~gl~~G~~V~~tg~~l~ 86 (469)
T 2c61_A 9 PMVKEYKTITQIAGPLIFVEKTEP-VGYNEIVNIKMGDGTVRRGQVLDS-SADIVVVQVFEGTGGLDKDCGVIFTGETLK 86 (469)
T ss_dssp -------------CCEEEEECCSC-CCTTCEEEEECTTSCEEEEEEEEE-CSSEEEEEEC-------------CEEEBCE
T ss_pred cccccccEEEEEECcEEEEeeCCC-CCcCCEEEEEeCCCCEEEEEEEEE-eCCEEEEEEeCCCcCCCCCCEEEEcCCCcE
Confidence 446779999999999999999864 3899999996422 3577999996 568999999999999999999999999999
Q ss_pred ccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCCccHH
Q psy17544 127 IPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKT 206 (266)
Q Consensus 127 VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT 206 (266)
||+|++|||||+|++|+|||+.+++..+.++|+++.||+|++|.++++||+||||+||+|+|||||||++|||++|+|||
T Consensus 87 vpvg~~lLGRV~d~lG~PiDg~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGir~ID~l~pigrGQr~~Ifgg~G~GKt 166 (469)
T 2c61_A 87 LPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHN 166 (469)
T ss_dssp EEECGGGTTCEEETTSCBSSSCCCCCCSEEEESSSCSSCCBCSCCCCSBCBCSCHHHHTTSCCBTTCBCCEEECTTSCHH
T ss_pred EEccccceeeEEcccCCCCCCCCCCCccccccccCccCCcccccccccccceeeEeeeeeeccccCCEEEEECCCCCCHH
Confidence 99999999999999999999999988888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc----CCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 207 VLIMELINNVAKA----HGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 207 ~L~~~ii~~~a~~----~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
+|+++|+++ +.+ +++++||++||||+||++||+++|.++|+|+ ||++|++++
T Consensus 167 ~Ll~~Ia~~-~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~------rtvvV~~ts 222 (469)
T 2c61_A 167 EIALQIARQ-ASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALE------RAVVFLNLA 222 (469)
T ss_dssp HHHHHHHHH-CBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGG------GEEEEEEET
T ss_pred HHHHHHHHH-HhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCcc------ceEEEEECC
Confidence 999999985 443 2359999999999999999999999999998 999999986
No 7
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=100.00 E-value=2.6e-49 Score=386.43 Aligned_cols=213 Identities=21% Similarity=0.367 Sum_probs=188.9
Q ss_pred cccccccCCCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEE
Q psy17544 40 KHYAAKAAPKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVA 119 (266)
Q Consensus 40 ~~~~~~~~~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~ 119 (266)
.+|..+ +..+.+|+|++|.|.+++++++..+ .+++.|++.+ + +.+||++ ++++++.+++|+++.||+.|+.|.
T Consensus 17 ~~~~~~--~~~~~~G~V~~v~g~iv~v~gl~~~-~~ge~~~i~~--g-~~g~v~~-l~~~~v~~~~~~~~~gi~~G~~V~ 89 (510)
T 2ck3_A 17 LGADTS--VDLEETGRVLSIGDGIARVHGLRNV-QAEEMVEFSS--G-LKGMSLN-LEPDNVGVVVFGNDKLIKEGDIVK 89 (510)
T ss_dssp ---------CCSSEEEEEEEETTEEEEEECTTC-BTTCEEEETT--S-CEEEEEE-ECSSCEEEEESSCGGGCCTTCEEE
T ss_pred HhcCCC--cceeEEeEEEEEECcEEEEeeCCCC-CCCCEEEECC--C-CeEEEEe-ccCCeEEEEEECCcccccCCCEEE
Confidence 466654 3355789999999999999998655 7899999954 2 4688888 577899999999999999999999
Q ss_pred ecCCCccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeec
Q psy17544 120 DSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFG 199 (266)
Q Consensus 120 ~tg~~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfg 199 (266)
+||++++||||++|||||+|++|+|||+++++...+++||+.+||+|++|.++++||+||||+||+|+|||||||++|||
T Consensus 90 ~tg~~~~vpvg~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~I~g 169 (510)
T 2ck3_A 90 RTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIG 169 (510)
T ss_dssp ECCCCCEEEESGGGTTCEECTTSCBCSSSCCCCCSEEEESSCCCCCSTTBCCCCSBCCCSCHHHHHHSCCBTTCBCEEEE
T ss_pred EeCCcceeecCccceeeEEccCCcCcCCCCCCCccceeecccCCCCcccccccCccccccceeeccccccccCCEEEEec
Confidence 99999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHHhc-------CCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 200 GAGVGKTVLIMELINNVAKA-------HGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 200 g~G~GKT~L~~~ii~~~a~~-------~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
++|+|||+|+.++|.|+++. ++.+|||++||||+||++||+++|.+.|+|+ ||++|++++
T Consensus 170 ~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~------~tvvV~ata 236 (510)
T 2ck3_A 170 DRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMK------YTIVVSATA 236 (510)
T ss_dssp STTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGG------GEEEEEECT
T ss_pred CCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcc------cceEEEECC
Confidence 99999999966666666652 3358999999999999999999999999998 999999986
No 8
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=100.00 E-value=2.5e-49 Score=385.98 Aligned_cols=212 Identities=23% Similarity=0.380 Sum_probs=186.3
Q ss_pred cccccccCCCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEE
Q psy17544 40 KHYAAKAAPKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVA 119 (266)
Q Consensus 40 ~~~~~~~~~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~ 119 (266)
++|..+ +..+.+|+|++|.|.+++++++..+ .+++.|++.+ + +.+||+++ +++++.+++|+++.||+.|+.|.
T Consensus 17 ~~~~~~--~~~~~~G~V~~v~g~iv~v~gl~~~-~~ge~~~i~~--g-~~g~v~~l-~~~~v~~~~~~~~~gi~~G~~V~ 89 (502)
T 2qe7_A 17 ENYEAD--LEVVEVGTVIQVGDGIARVHGLEKV-MAGELLEFEN--G-VMGMAQNL-EEDNVGVVILGPYTEIREGTQVK 89 (502)
T ss_dssp ------------CEEEEEEEETTEEEEECCTTC-BTTEEEEETT--S-CEEEEEEE-ETTEEEEEECSCCSSCCTTCEEE
T ss_pred HhcCCC--cceeEEEEEEEecCcEEEEEECCCC-CCCCEEEECC--C-CEEEEEEe-cCCeEEEEEecCccCCcCCCEEE
Confidence 466653 3355789999999999999998655 7899999954 2 46888884 67899999999999999999999
Q ss_pred ecCCCccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeec
Q psy17544 120 DSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFG 199 (266)
Q Consensus 120 ~tg~~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfg 199 (266)
+||++++||||++|||||+|++|+|||+++++...+++|++.+||+|++|.++++||+||||+||+|+|||||||++|||
T Consensus 90 ~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~Ifg 169 (502)
T 2qe7_A 90 RTGRIMEVPVGEALLGRVVNPLGQPLDGRGPIETAEYRPIESPAPGVMDRKSVHEPLQTGIKAIDSMIPIGRGQRELIIG 169 (502)
T ss_dssp EEEEESEEECSGGGTTCEECTTCCBSSCSCCCCCCCEEESSCCCCCTTSBCCCCSBCCCSCHHHHHSSCCBTTCBCEEEE
T ss_pred EeCCcceEEcccccceEEEccCCCCCCCCCCCCCCceeeccCCCCCcccccCCCCccccceeecccccccccCCEEEEEC
Confidence 99999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 200 GAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 200 g~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
++|+|||+|+.+++.|++ .++.+|||++||||+||++||+++|.+.|+|+ ||++|++++
T Consensus 170 ~~g~GKT~Lal~~I~~~~-~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~------~tvvV~ata 228 (502)
T 2qe7_A 170 DRQTGKTTIAIDTIINQK-GQDVICIYVAIGQKQSTVAGVVETLRQHDALD------YTIVVTASA 228 (502)
T ss_dssp CSSSCHHHHHHHHHHGGG-SCSEEEEEEEESCCHHHHHHHHHHHHHTTCST------TEEEEEECT
T ss_pred CCCCCchHHHHHHHHHhh-cCCcEEEEEECCCcchHHHHHHHHHhhCCCcc------eeEEEEECC
Confidence 999999999766666665 33347899999999999999999999999998 999999986
No 9
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=100.00 E-value=3.2e-49 Score=385.63 Aligned_cols=212 Identities=23% Similarity=0.336 Sum_probs=188.3
Q ss_pred cccccccCCCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEE
Q psy17544 40 KHYAAKAAPKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVA 119 (266)
Q Consensus 40 ~~~~~~~~~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~ 119 (266)
++|..+ +..+.+|+|++|.|.+++++++..+ .+++.|++.+ + +.+||++ ++++.+.+++|+++.||+.|+.|.
T Consensus 18 ~~~~~~--~~~~~~G~V~~v~g~iv~v~gl~~~-~~ge~~~i~~--g-~~g~v~~-l~~~~v~~~~~~~~~gi~~G~~V~ 90 (507)
T 1fx0_A 18 EGYNRE--VKVVNTGTVLQVGDGIARIHGLDEV-MAGELVEFEE--G-TIGIALN-LESNNVGVVLMGDGLMIQEGSSVK 90 (507)
T ss_dssp ---------CTTTEEEECCCCSSEEEEEECTTC-CTTCCEEETT--C-CEEEEEE-ECSSEEEEEECSCGGGCCTTCEEE
T ss_pred HhccCC--cceeEEEEEEEEeCCEEEEEECCCc-cCCCEEEECC--C-ceEEEEe-ccCCeEEEEEecCccCCcCCCEEE
Confidence 466653 3355789999999999999998655 7899999964 2 4688888 577899999999999999999999
Q ss_pred ecCCCccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeec
Q psy17544 120 DSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFG 199 (266)
Q Consensus 120 ~tg~~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfg 199 (266)
+||++++||||++|||||+|++|+|||+++++...+++|++.+||+|++|.++++||+||||+||+|+|||||||++|||
T Consensus 91 ~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~Ifg 170 (507)
T 1fx0_A 91 ATGRIAQIPVSEAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIG 170 (507)
T ss_dssp CCCCCCEEEESSSCSSCCCCSSSCCSSSSCCCCCSEEEESSCCCCCSSSBCCCCSBCCCSCTTTTTTSCCBTTCBCBEEE
T ss_pred EeCCcceeecCccceeEEEccCCcCCCCCCCCCCCceeeccCCCCCcccccccCCcccccceecccccccccCCEEEEec
Confidence 99999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 200 GAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 200 g~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
++|+|||+|+.+++.|+++ ++.+|||++||||+||++||+++|.+.|+|+ ||++|++++
T Consensus 171 ~~g~GKT~Lal~~I~~~~~-~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~------rtvvV~ata 229 (507)
T 1fx0_A 171 DRQTGKTAVATDTILNQQG-QNVICVYVAIGQKASSVAQVVTNFQERGAME------YTIVVAETA 229 (507)
T ss_dssp SSSSSHHHHHHHHHHTCCT-TTCEEEEEEESCCHHHHHHHHHHTGGGTGGG------SEEEEEECT
T ss_pred CCCCCccHHHHHHHHHhhc-CCcEEEEEEcCCCchHHHHHHHHHHhcCccc------cceEEEECC
Confidence 9999999997666666643 4458999999999999999999999999998 999999986
No 10
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=100.00 E-value=8.6e-49 Score=382.65 Aligned_cols=213 Identities=23% Similarity=0.397 Sum_probs=191.6
Q ss_pred cccccccCCCCccccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEE
Q psy17544 40 KHYAAKAAPKGKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVA 119 (266)
Q Consensus 40 ~~~~~~~~~~~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~ 119 (266)
++|..+ +..+.+|+|++|.|.+++++++..+ .+++.|++.. ++ +.+||++ ++++.+.+++|+++.||+.|+.|.
T Consensus 29 ~~~~~~--~~~~~~G~V~~V~g~iv~v~gl~~~-~~gEl~~i~~-~g-~~g~v~~-l~~~~v~~~~~~~~~gi~~G~~V~ 102 (515)
T 2r9v_A 29 KSFEEK--IDLEDTGKVIQVGDGIARAYGLNKV-MVSELVEFVE-TG-VKGVAFN-LEEDNVGIIILGEYKDIKEGHTVR 102 (515)
T ss_dssp CTTCCC--SCTTTEEEEEEEETTEEEEEECTTC-CTTEEEEETT-TC-CEEEEEE-CCTTCEEEEEESCCTTCCTTCEEE
T ss_pred HhcCCC--CcceeeeEEEEEECcEEEEecCCCC-CCCCEEEEec-CC-eEEEEEE-ecCCeEEEEEecCcccccCCCEEE
Confidence 467664 3455789999999999999998655 7899999942 22 4689888 577899999999999999999999
Q ss_pred ecCCCccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeec
Q psy17544 120 DSGNPIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFG 199 (266)
Q Consensus 120 ~tg~~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfg 199 (266)
+||++++||+|++|||||+|++|+|||+++++...+++|++.+||+|++|.++++||+||||+||+|+|||||||++|||
T Consensus 103 ~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~P~~~~R~~v~epl~TGiraID~l~PigrGQR~~I~g 182 (515)
T 2r9v_A 103 RLKRIIEVPVGEELLGRVVNPLGEPLDGKGPINAKNFRPIEIKAPGVIYRKPVDTPLQTGIKAIDSMIPIGRGQRELIIG 182 (515)
T ss_dssp EEEEECEEEESGGGTTCEECTTSCBCSSSCCCCCSEEEESCCCCCCGGGBCCCCSEECCSCHHHHHHSCEETTCBEEEEE
T ss_pred EeCCcceeecCccceeeEEcCCCCCcCCCCCCCccceeecccCCCCcccccCCCcchhcCccccccccccccCCEEEEEc
Confidence 99999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 200 GAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 200 g~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
++|+|||+|+.+++.|+++ ++.+|||++||||+|||+||+++|.+.|+|+ ||++|++++
T Consensus 183 ~~g~GKT~Lal~~I~~~~~-~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~------rtvvV~ata 241 (515)
T 2r9v_A 183 DRQTGKTAIAIDTIINQKG-QGVYCIYVAIGQKKSAIARIIDKLRQYGAME------YTTVVVASA 241 (515)
T ss_dssp ETTSSHHHHHHHHHHTTTT-TTEEEEEEEESCCHHHHHHHHHHHHHTTGGG------GEEEEEECT
T ss_pred CCCCCccHHHHHHHHHhhc-CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcc------eeEEEEECC
Confidence 9999999997666665653 3347899999999999999999999999998 999999986
No 11
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=100.00 E-value=9.3e-47 Score=366.44 Aligned_cols=207 Identities=65% Similarity=1.039 Sum_probs=194.9
Q ss_pred ccEEEEEECcEEEEEecC-CCcccccEEEEec-C--CC----ceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCC
Q psy17544 53 NGRVVAVIGAVVDVQFDH-DLPPILNALEVEG-R--SP----RLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNP 124 (266)
Q Consensus 53 ~GrV~~I~G~vV~v~~~~-~~p~ig~~~~v~~-~--~~----~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~ 124 (266)
+|+|++|.|++++++|+. ..|.+++.|++.. . +. .+.+||+++++++.+++++|+++.||++|++|.+||++
T Consensus 3 ~G~v~~v~G~vv~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~ev~~~~~~~~v~~~~~~~t~gl~~G~~V~~tg~~ 82 (473)
T 1sky_E 3 RGRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIAMASTDGLIRGMEVIDTGAP 82 (473)
T ss_dssp EEEEEEEETTEEEEEESTTCCCCTTEEEEEEECCSSTTCCCEEEEEEEEEEEETTEEEEEESSCCTTCCTTCEEEEEEEE
T ss_pred ceEEEEEECcEEEEEecCCcccccCCEEEEEecCCCCCccccceEEEEeEEecCCcEEEEEecCccCCCCCCEEEEcCCc
Confidence 699999999999999985 4779999999965 2 22 58999999899999999999999999999999999999
Q ss_pred ccccCChhhhhhhhcccCccccCCCCCCCC-CccccccCcccccccccccccccccceEeecccccccCceeeeecCCCc
Q psy17544 125 IKIPVGAETLGRIINVIGEPIDERGPIDTD-KSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGV 203 (266)
Q Consensus 125 ~~VpvG~~lLGRViD~~G~PlD~~~~~~~~-~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~ 203 (266)
+++|+|++|||||+|++|+|||+.+++..+ ++||++.+||+|++|.++++||+||||+||.|+|++||||++|||++|+
T Consensus 83 ~~vpvg~~llGrv~d~lG~piD~~g~i~~~~~~~pi~~~~p~~~~r~~~~e~l~TGir~ID~L~pi~kGq~~~i~G~sGv 162 (473)
T 1sky_E 83 ISVPVGQVTLGRVFNVLGEPIDLEGDIPADARRDPIHRPAPKFEELATEVEILETGIKVVDLLAPYIKGGKIGLFGGAGV 162 (473)
T ss_dssp CEEECSGGGTTCEECTTSCBCSSSCCCCTTSCEEESCCCCCCGGGBCCSCCEECCSCHHHHHHSCEETTCEEEEECCSSS
T ss_pred ceeeccccceeeEEeecCCccCcccccCCCceeecccccCcchhhhcccCccccccchHHHHHhhhccCCEEEEECCCCC
Confidence 999999999999999999999999998877 7899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 204 GKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 204 GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
|||||+.+++++++..+++++||++||||++|++||+++|.+.++++ |+++|++++
T Consensus 163 GKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l~~~~~l~------~tvvv~~~~ 218 (473)
T 1sky_E 163 GKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKDSGVIS------KTAMVFGQM 218 (473)
T ss_dssp CHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGG------GEEEEEECT
T ss_pred CccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHhhhcCCcc------eeEEEEEcC
Confidence 99999999999877666679999999999999999999999999998 999999986
No 12
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=100.00 E-value=6.7e-46 Score=366.00 Aligned_cols=199 Identities=21% Similarity=0.365 Sum_probs=173.1
Q ss_pred ccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccCChh
Q psy17544 53 NGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAE 132 (266)
Q Consensus 53 ~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~VpvG~~ 132 (266)
.|+|++|.|++++++++..+ .+++.|++. +..+.+||+++.+ +.+.+++|+++.||++|++|++||++++|++|++
T Consensus 10 ~G~V~~V~G~vv~v~g~~~~-~~gE~v~v~--~~~l~gEVi~~~~-d~a~i~v~e~t~Gl~~G~~V~~tG~~lsV~vG~~ 85 (600)
T 3vr4_A 10 IGKIIKVSGPLVMAENMSEA-SIQDMCLVG--DLGVIGEIIEMRQ-DVASIQVYEETSGIGPGEPVRSTGEALSVELGPG 85 (600)
T ss_dssp CEEEEEEETTEEEEESCTTS-CTTCEEEET--TTTEEEEEEEEET-TEEEEEESSCCTTCCTTCEEEECSSSSEEEESTT
T ss_pred ceEEEEEECcEEEEEcCCCC-ccCCEEEEC--CCcEEEEEEEEcC-CcEEEEEccCCCCCCCCCEEEECCCCCEEEeCHH
Confidence 69999999999999998754 899999994 3468999999765 6888999999999999999999999999999999
Q ss_pred hhhhhhcccCccccCC----C-----------CCCCCCc-----------------------------------------
Q psy17544 133 TLGRIINVIGEPIDER----G-----------PIDTDKS----------------------------------------- 156 (266)
Q Consensus 133 lLGRViD~~G~PlD~~----~-----------~~~~~~~----------------------------------------- 156 (266)
|||||+|++|+|||+. + +++.++.
T Consensus 86 lLGrV~DglGrPlD~~~~~~g~~~~~~g~~~~~l~~~~~w~f~p~~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~ 165 (600)
T 3vr4_A 86 IISQMFDGIQRPLDTFMEVTQSNFLGRGVQLPALDHEKQWWFEATIEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGT 165 (600)
T ss_dssp CTTCEECTTCCBHHHHHHHHCSSBCCTTCCCCSSCSSCCEEEEECSCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEE
T ss_pred HHhhhhCcCCCcccccccccCccccccCCcCCCCCcccccccCcccccCCEecCCceEEEEecCCceeeeeecCCCCCce
Confidence 9999999999999986 4 2332222
Q ss_pred --------------------------------cccccCcccccccccccccccccceEeecccccccCceeeeecCCCcc
Q psy17544 157 --------------------------------AAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVG 204 (266)
Q Consensus 157 --------------------------------~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~G 204 (266)
||++. ||++++|.++++||+||||+||+|+||+||||++||||+|+|
T Consensus 166 v~~i~~g~~~v~~~v~~i~~~~g~~~i~~~~~wpv~~-~~p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifgg~g~G 244 (600)
T 3vr4_A 166 VQKIESGSFTIDDPICVIETEQGLKELTMMQKWPVRR-GRPIKQKLNPDVPMITGQRVIDTFFPVTKGGAAAVPGPFGAG 244 (600)
T ss_dssp EEEECCEEECTTSCCEEEEETTEEEEECSCEEEETTS-CCCCSEEECCCSBCCCCCHHHHHHSCCBTTCEEEEECCTTSC
T ss_pred EEEecCCcceeceeEEEEeccCCcccccccccccccC-CCchhhccCCCceecccchhhhccCCccCCCEEeeecCCCcc
Confidence 22222 345678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHh-------cCccccCCCCCceEEEeecc
Q psy17544 205 KTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIE-------SGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 205 KT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~-------~gvl~~~~~~~~~~~v~~q~ 265 (266)
||+|+++|+++ +++ +++||++||||+||++||+++|++ .++|+ ||++|++|+
T Consensus 245 KT~L~~~ia~~-~~~--~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~------rtvvV~~ts 303 (600)
T 3vr4_A 245 KTVVQHQIAKW-SDV--DLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLME------RTVLIANTS 303 (600)
T ss_dssp HHHHHHHHHHH-SSC--SEEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGG------GEEEEEEET
T ss_pred HHHHHHHHHhc-cCC--CEEEEEEecccHHHHHHHHHHHHhhccccccccccc------ceEEEEECC
Confidence 99999999874 444 599999999999999999999987 34555 999999986
No 13
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=100.00 E-value=1.7e-45 Score=361.88 Aligned_cols=206 Identities=25% Similarity=0.324 Sum_probs=172.3
Q ss_pred ccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccCChh
Q psy17544 53 NGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGAE 132 (266)
Q Consensus 53 ~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~VpvG~~ 132 (266)
.|+|++|.|++++++++... .+++.|++. +..+.+||+++.+ +.+.+++|+++.||++|++|.+||++++||+|++
T Consensus 3 ~G~V~~V~G~vv~v~g~~~~-~~gE~v~v~--~~~l~gEVi~~~~-d~~~i~v~e~t~Gl~~G~~V~~tg~~l~V~vG~~ 78 (578)
T 3gqb_A 3 QGVIQKIAGPAVIAKGMLGA-RMYDISKVG--EEGLVGEIIRLDG-DTAFVQVYEDTSGLKVGEPVVSTGLPLAVELGPG 78 (578)
T ss_dssp EEEEEEEETTEEEEESCTTC-CTTEEEEET--TTTEEEEEEEEET-TEEEEEESSCCTTCCTTCEEEEEEEESEEEESTT
T ss_pred eeEEEEEECCEEEEEcCCCC-ccCCEEEEC--CCcEEEEEEEEcC-CcEEEEEcCCCCCCCCCCEEEECCCCCEEEeCHH
Confidence 69999999999999998754 899999994 3468999999765 6788999999999999999999999999999999
Q ss_pred hhhhhhcccCccccCC----C----------CCCCCCcc-------------------------cccc------------
Q psy17544 133 TLGRIINVIGEPIDER----G----------PIDTDKSA-------------------------AIHA------------ 161 (266)
Q Consensus 133 lLGRViD~~G~PlD~~----~----------~~~~~~~~-------------------------pI~~------------ 161 (266)
|||||+|++|+|||+. + +++.++.| ++|.
T Consensus 79 lLGrV~DglG~PlD~~~~~~g~~~~~g~~~~~l~~~~~w~f~p~~~~g~~v~~G~i~g~v~e~~~ih~i~~pp~~~g~v~ 158 (578)
T 3gqb_A 79 MLNGIYDGIQRPLERIREKTGIYITRGVVVHALDREKKWAWTPMVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVK 158 (578)
T ss_dssp CTTCEECTTSCBHHHHHHHHCSBCCTTCCCCSSCSSSCEEEEECCCTTCEECTTCEEEEEEETTEEEEEECCTTCCEEEE
T ss_pred HhhhhhCcCCCcccccccccCccccccccCCCcCcccccccccccccCccccccceeeeecccccceecccCCCcCceeE
Confidence 9999999999999987 3 22222222 2222
Q ss_pred --------------------------------CcccccccccccccccccceEeecccccccCceeeeecCCCccHHHHH
Q psy17544 162 --------------------------------DAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLI 209 (266)
Q Consensus 162 --------------------------------~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G~GKT~L~ 209 (266)
.|+++++|.++++||+||||+||+|+|||||||++||||+|+|||+|+
T Consensus 159 ~i~~~G~~~v~~~i~~~~~g~~i~~~~~wPv~~~~p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifg~~g~GKT~l~ 238 (578)
T 3gqb_A 159 EVKPAGEYTVEEPVVVLEDGTELKMYHTWPVRRARPVQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKSVTQ 238 (578)
T ss_dssp EECCSEEECTTSCSEEETTCCEECSCEEEETTSCCCCSEEECSCSEECCSCHHHHTTSCEETTCEEEECCCTTSCHHHHH
T ss_pred EeccCCcccccceeEEeecCccccccccccccCCCChHHhccCCCcccccchhhhhcccccCCCEEeeeCCCCccHHHHH
Confidence 113456899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccc-cCCCCCceEEEeecc
Q psy17544 210 MELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVIS-LKDKSSKVNFLFNSR 265 (266)
Q Consensus 210 ~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~-~~~~~~~~~~v~~q~ 265 (266)
++|+++ +++ +++||++||||+||++||+++|+++.--+ ..+.++|+++|++++
T Consensus 239 ~~ia~~-~~~--~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~~~rtvvv~~ts 292 (578)
T 3gqb_A 239 QSLAKW-SNA--DVVVYVGSGERGNEMTDVLVEFPELTDPKTGGPLMHRTVLIANTS 292 (578)
T ss_dssp HHHHHH-SSC--SEEEEEEEEECHHHHHHHHTTGGGCBCTTTSSBSGGGEEEEEEET
T ss_pred HHHHhc-cCC--CEEEEEEecccHHHHHHHHHHHHhhcccccccccccceEEEEECC
Confidence 999874 444 59999999999999999999998721100 122334999999986
No 14
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=100.00 E-value=1.1e-45 Score=363.31 Aligned_cols=200 Identities=24% Similarity=0.363 Sum_probs=122.1
Q ss_pred cccEEEEEECcEEEEEecCCCcccccEEEEecCCCceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCCCccccCCh
Q psy17544 52 GNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGNPIKIPVGA 131 (266)
Q Consensus 52 ~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~~~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~~~~VpvG~ 131 (266)
..|+|++|.|++++++++..+ .+++.|++.. ..+.+||+++ +++.+.+++|+++.||+.|++|.+||++++|++|+
T Consensus 3 ~~G~V~~V~G~iv~~~g~~~~-~~gElv~v~~--~~l~geVi~l-~~d~~~i~v~e~t~Gi~~G~~V~~tg~~lsV~vG~ 78 (588)
T 3mfy_A 3 AKGRIIRVTGPLVVADGMKGA-KMYEVVRVGE--LGLIGEIIRL-EGDKAVIQVYEETAGVRPGEPVVGTGASLSVELGP 78 (588)
T ss_dssp --------------------------------------------------------------CCCCCSSSSSCCEEEEST
T ss_pred ceeEEEEEECCEEEEEcCCCC-ccCCEEEEcC--CceEEEEEEe-cCCeEEEEEccCCCCCCCCCEEEEcCCCCEEEeCH
Confidence 369999999999999998755 7899999943 4589999996 56899999999999999999999999999999999
Q ss_pred hhhhhhhcccCccccCCCCC--------------CCCC------------------------------------------
Q psy17544 132 ETLGRIINVIGEPIDERGPI--------------DTDK------------------------------------------ 155 (266)
Q Consensus 132 ~lLGRViD~~G~PlD~~~~~--------------~~~~------------------------------------------ 155 (266)
+|||||+|++|+|||+.++. +.++
T Consensus 79 gLLGrV~DglgrPLd~~~~~~g~~~~~g~~~~~l~~~~~w~f~p~~~~gd~v~~G~i~g~v~e~~~~~~~imvpp~~~g~ 158 (588)
T 3mfy_A 79 RLLTSIYDGIQRPLEVIREKTGDFIARGVTAPALPRDKKWHFIPKAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGE 158 (588)
T ss_dssp TCTTCEEETTCCSSSSCCCCCSSSCCCCCCCCSSCSSCCEEEEECCCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEE
T ss_pred HHHhhccCCCCCcccCcccccccccccccccCccccccccccccccccCcccccCceEEEEecccceeeeeecCCCCCce
Confidence 99999999999999997531 1111
Q ss_pred ---------------------------------ccccccCcccccccccccccccccceEeecccccccCceeeeecCCC
Q psy17544 156 ---------------------------------SAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAG 202 (266)
Q Consensus 156 ---------------------------------~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G 202 (266)
+||++. |+++++|.++++||+||||+||+|+|||||||++|||++|
T Consensus 159 v~~i~~~g~~~v~~~i~~i~~~~g~~~~i~~~~~wpv~~-~~p~~~R~~~~epl~TGirvID~l~PigkGqr~~I~g~~g 237 (588)
T 3mfy_A 159 IVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRV-KRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPAG 237 (588)
T ss_dssp EEEECCSEEECTTSEEEEEECTTCCEEEEESCEEEETTS-CCCCSEEECSCSEECCSCHHHHHHSCEETTCEEEECSCCS
T ss_pred EEEeccCCcccccceEEEEecCCCccccccccccccccC-CCchhhhccCCcccccCcchhhccCCcccCCeEEeecCCC
Confidence 133332 3345789999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHh-------cCccccCCCCCceEEEeecc
Q psy17544 203 VGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIE-------SGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 203 ~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~-------~gvl~~~~~~~~~~~v~~q~ 265 (266)
+|||+|+++|+++ +++ +++||++||||+||++||+++|++ .++++ ||++|++++
T Consensus 238 ~GKT~L~~~ia~~-~~~--~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~------rtvvV~~ts 298 (588)
T 3mfy_A 238 SGKTVTQHQLAKW-SDA--QVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLME------RTVLIANTS 298 (588)
T ss_dssp HHHHHHHHHHHHH-SSC--SEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGG------GEEEEECCT
T ss_pred CCHHHHHHHHHhc-cCC--CEEEEEEecccHHHHHHHHHHHHHhccccccccccc------ceEEEEECC
Confidence 9999999998874 444 599999999999999999999987 34555 999999986
No 15
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=100.00 E-value=5.1e-36 Score=288.90 Aligned_cols=204 Identities=23% Similarity=0.383 Sum_probs=179.5
Q ss_pred CccccEEEEEECcEEEEEecCCCcccccEEEEecCC-C---ceEEEEeeeeCCceeEEEeccCCCCCCCCCEEEecCC--
Q psy17544 50 GKGNGRVVAVIGAVVDVQFDHDLPPILNALEVEGRS-P---RLVLEVAQHLGENTVRTIAMDGTEGLVRGQVVADSGN-- 123 (266)
Q Consensus 50 ~~~~GrV~~I~G~vV~v~~~~~~p~ig~~~~v~~~~-~---~l~~EVv~~l~~~~v~l~~~~~t~Gl~~G~~V~~tg~-- 123 (266)
.+.+|+|++|.|.+++++|+ . +.+++.|++...+ . .+.+||++ ++++.+.+++|+++.||++|+.|.+||+
T Consensus 7 ~~~~g~v~~v~g~~~~~~~~-~-~~~~e~~~~~~~~~~~~~~~~~ev~~-~~~~~~~~~~~~~~~gl~~g~~v~~~~~~~ 83 (438)
T 2dpy_A 7 VRRYGRLTRATGLVLEATGL-Q-LPLGATCIIERQDGPETKEVESEVVG-FNGQRLFLMPLEEVEGILPGARVYARNGHG 83 (438)
T ss_dssp CCCCEEEEECSSSSEEEESC-C-CCSSCEEEEEECSTTSCEEEEEEEEE-CCTTCEEEEESSCCTTCCTTEEEEEC----
T ss_pred cceeeEEEEEECcEEEEEeC-C-CCCCCEEEEecCCCCccccEEEEEEE-EcCCEEEEEEccCCCCCCCCCEEEECCCcc
Confidence 56689999999999999998 3 4899999997522 2 58999999 5778999999999999999999999999
Q ss_pred -----CccccCChhhhhhhhcccCccccCCCCCCCCCccccccCcccccccccccccccccceEeecccccccCceeeee
Q psy17544 124 -----PIKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLF 198 (266)
Q Consensus 124 -----~~~VpvG~~lLGRViD~~G~PlD~~~~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIf 198 (266)
++++++|+++||||+|++|+|+|+.+++....++|++.++|++.++..+++++.||+++||.++|+++||+++||
T Consensus 84 ~~~~~~~~v~~g~~~lgrv~~~lg~p~d~~~~~~~~~~~~i~~~~~~~l~~~~v~~~~~tg~~vld~vl~i~~Gq~~~Iv 163 (438)
T 2dpy_A 84 DGLQSGKQLPLGPALLGRVLDGGGKPLDGLPAPDTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLF 163 (438)
T ss_dssp ------CEEECSGGGTTEEECTTCCBSSSSCCCCCSCEEESCCCCCCTTTSCCCCSBCCCSCHHHHHHSCCBTTCEEEEE
T ss_pred ccccccEEEEcchhhhhhhhhccCCccCCCCCccccccccccCCCCCceEEeccceecCCCceEEeeeEEecCCCEEEEE
Confidence 999999999999999999999999988887778999999999999999999999999999999999999999999
Q ss_pred cCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 199 GGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 199 gg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
|++|+|||||+.+|++. .+ .+..+|.++|+|++|+++|.+++.+.+.++ +++.|+.|.
T Consensus 164 G~sGsGKSTLl~~Iag~-~~--~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~------r~i~~v~q~ 221 (438)
T 2dpy_A 164 AGSGVGKSVLLGMMARY-TR--ADVIVVGLIGERGREVKDFIENILGPDGRA------RSVVIAAPA 221 (438)
T ss_dssp ECTTSSHHHHHHHHHHH-SC--CSEEEEEEESCCHHHHHHHHHTTTHHHHHH------TEEEEEECT
T ss_pred CCCCCCHHHHHHHHhcc-cC--CCeEEEEEeceecHHHHHHHHhhccccccC------ceEEEEECC
Confidence 99999999999888874 33 347899999999999999998776666565 777777763
No 16
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.94 E-value=1.7e-27 Score=223.12 Aligned_cols=132 Identities=30% Similarity=0.469 Sum_probs=117.5
Q ss_pred CccccCChhhhhhhhcccCccccCCC-CCCCCCccccccCcccccccccccccccccceEeecccccccCceeeeecCCC
Q psy17544 124 PIKIPVGAETLGRIINVIGEPIDERG-PIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAG 202 (266)
Q Consensus 124 ~~~VpvG~~lLGRViD~~G~PlD~~~-~~~~~~~~pI~~~~p~~~~R~~~~e~l~TGIraID~L~pigkGQr~gIfgg~G 202 (266)
+++||||++|||||+|++|+|||+.+ ++...+++|++.+||++.+|..+++++.||+++||.++||++||+++|||++|
T Consensus 2 ~~~~~vg~~~lGrv~~~~g~p~d~~~~~~~~~~~~~i~~~~~~~i~~~~l~~~~~tg~~ald~ll~i~~Gq~~gIiG~nG 81 (347)
T 2obl_A 2 SHKIRVGDALLGRLIDGIGRPMESNIVAPYLPFERSLYAEPPDPLLRQVIDQPFILGVRAIDGLLTCGIGQRIGIFAGSG 81 (347)
T ss_dssp CCEEEECGGGTTCEECTTSCBCSCCSSCCCCCEEEESCCCCSCSTTCCCCCSEECCSCHHHHHHSCEETTCEEEEEECTT
T ss_pred CceeecCccccCCEECCCCCcCCCCCCCCCCCCcccccCCCCCCeeecccceecCCCCEEEEeeeeecCCCEEEEECCCC
Confidence 68999999999999999999999998 88877889999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcCccccCCCCCceEEEeecc
Q psy17544 203 VGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265 (266)
Q Consensus 203 ~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~gvl~~~~~~~~~~~v~~q~ 265 (266)
+|||||+.+|++. .+ ++..+|.++|||++|+++|+..+.+ +.++ ++++++.|+
T Consensus 82 aGKTTLl~~I~g~-~~--~~~g~i~~~G~~~~ev~~~i~~~~~-~~~~------~~v~~~~~~ 134 (347)
T 2obl_A 82 VGKSTLLGMICNG-AS--ADIIVLALIGERGREVNEFLALLPQ-STLS------KCVLVVTTS 134 (347)
T ss_dssp SSHHHHHHHHHHH-SC--CSEEEEEEESCCHHHHHHHHTTSCH-HHHT------TEEEEEECT
T ss_pred CCHHHHHHHHhcC-CC--CCEEEEEEecccHHHHHHHHHhhhh-hhhh------ceEEEEECC
Confidence 9999999988874 33 3588999999999999999876333 3444 778887764
No 17
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=99.92 E-value=1.5e-26 Score=220.24 Aligned_cols=132 Identities=18% Similarity=0.218 Sum_probs=109.0
Q ss_pred CCCCCCCCCEEEecCCCccccCChhhhhhhhcccCccccCCC-CCCCCCccccccCccccccccccc-ccccccceEeec
Q psy17544 108 GTEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDERG-PIDTDKSAAIHADAPEFVEMSVEQ-EILVTGIKVVDL 185 (266)
Q Consensus 108 ~t~Gl~~G~~V~~tg~~~~VpvG~~lLGRViD~~G~PlD~~~-~~~~~~~~pI~~~~p~~~~R~~~~-e~l~TGIraID~ 185 (266)
...+|+.||.|...-++.+-.--...|+||.+.+|++.+... ....++ ..|++|++|.+++ +|++||+|+||+
T Consensus 94 r~~~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng~~p~~~~~r~~fe~-----l~Pi~P~~R~~le~e~~~tGiraID~ 168 (427)
T 3l0o_A 94 RKFNLNTGDIISGVIRKPKEGEKYFAMIKIEAINYRPVEAVNDRVNFDN-----LTPDYPRERFILETDPKIYSTRLIDL 168 (427)
T ss_dssp HHTTCCTTCEEEEEEECCCSSSCSEEEEEEEEETTEEC----CCCCGGG-----SCEECCCSBCCCCCSTTCHHHHHHHH
T ss_pred HhcCCCCCCEEEEEEeCCCCCcccccceEEEecCCCChHHhcccccccc-----CCCCCchhhccccccchhccchhhhh
Confidence 356899999999988777655445678999999999887632 112222 2366999999998 999999999999
Q ss_pred ccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCc-EEEEEeecCCchHHHHHHHHhH
Q psy17544 186 LAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-YSVFAGVGERTREGNDLYHEMI 244 (266)
Q Consensus 186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~-v~V~alIGER~rEv~ef~~~l~ 244 (266)
|+|||||||++|||++|+|||+|+++|+++.+++|.+ .|||++||||++||+||++++.
T Consensus 169 l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~~~ 228 (427)
T 3l0o_A 169 FAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIRESTN 228 (427)
T ss_dssp HSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSSCC
T ss_pred cccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHHhC
Confidence 9999999999999999999999999999986655655 6899999999999999999986
No 18
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=99.85 E-value=3.9e-22 Score=190.05 Aligned_cols=130 Identities=17% Similarity=0.154 Sum_probs=95.0
Q ss_pred CCCCCCCCEEEecCCCccccCChhhhhhhhcccCccccC-CCCCCCCCccccccCccccccccccc----ccccccceEe
Q psy17544 109 TEGLVRGQVVADSGNPIKIPVGAETLGRIINVIGEPIDE-RGPIDTDKSAAIHADAPEFVEMSVEQ----EILVTGIKVV 183 (266)
Q Consensus 109 t~Gl~~G~~V~~tg~~~~VpvG~~lLGRViD~~G~PlD~-~~~~~~~~~~pI~~~~p~~~~R~~~~----e~l~TGIraI 183 (266)
..+|+.||.|...-++.+=.--..-|-++-...|.+.+. .+.+..+...|+ +|.+|..++ +|++||+|+|
T Consensus 91 ~~~lr~gd~v~g~~r~~~~~ER~faLl~v~~vn~~~pe~~~~ri~Fe~ltp~-----yP~er~~Le~~~~~~~~tGiraI 165 (422)
T 3ice_A 91 RFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPL-----HANSRLRMERGNGSTEDLTARVL 165 (422)
T ss_dssp HHTCCTTCEEEEEEECCCSSCCSEEEEEEEEESSSCHHHHTTSCCTTTSCEE-----SCCSBCCCCCTTCCTTHHHHHHH
T ss_pred hcCCCCCCEEEEEEeCCCccchHHHHhccCcccCCChhhhcCCceecccccc-----CCCCccccccCCCCcccccceee
Confidence 457889999887654443211111222333334444432 233344444433 566777777 8999999999
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCc-EEEEEeecCCchHHHHHHHHh
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-YSVFAGVGERTREGNDLYHEM 243 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~-v~V~alIGER~rEv~ef~~~l 243 (266)
|+++|+++|||++|||++|+|||||+++|+++.+++|++ .|||++||||++||+||++++
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~ 226 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 226 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTC
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHh
Confidence 999999999999999999999999999999877666655 699999999999999999887
No 19
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.89 E-value=1e-05 Score=69.14 Aligned_cols=43 Identities=30% Similarity=0.477 Sum_probs=38.5
Q ss_pred cccccccceEeeccc--ccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 173 QEILVTGIKVVDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 173 ~e~l~TGIraID~L~--pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
-+.+.||+..+|-++ -+-+|+-++|.|++|+|||||+..++.+
T Consensus 9 ~~~i~tg~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 9 VRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp CCEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cceeecCCHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 356789999999988 6999999999999999999999988854
No 20
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.88 E-value=1.1e-05 Score=68.88 Aligned_cols=65 Identities=31% Similarity=0.450 Sum_probs=51.3
Q ss_pred ccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHH
Q psy17544 174 EILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGND 238 (266)
Q Consensus 174 e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~e 238 (266)
+.+.||+..+|-++. +-+|+=+.|.|++|+|||+|+.+++.|.+...+..++|.-.-+..+++.+
T Consensus 10 ~ri~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~ 76 (251)
T 2zts_A 10 RRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRR 76 (251)
T ss_dssp CEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHH
T ss_pred CeecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHH
Confidence 347899999999997 88999999999999999999999887654443345666666666555443
No 21
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.86 E-value=1.2e-05 Score=67.51 Aligned_cols=61 Identities=26% Similarity=0.336 Sum_probs=46.0
Q ss_pred ccccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchH
Q psy17544 174 EILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTRE 235 (266)
Q Consensus 174 e~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rE 235 (266)
+.+.||++.+|-++. +-+|+-++|.|++|+|||||+.+++.+.+... .-++|...-+...+
T Consensus 3 ~~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~-~~v~~~~~~~~~~~ 65 (235)
T 2w0m_A 3 SRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDG-DPCIYVTTEESRDS 65 (235)
T ss_dssp CEECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHT-CCEEEEESSSCHHH
T ss_pred ccccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCC-CeEEEEEcccCHHH
Confidence 457899999999985 88999999999999999999999987654333 33444443333333
No 22
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.62 E-value=1.4e-05 Score=67.50 Aligned_cols=43 Identities=33% Similarity=0.325 Sum_probs=38.4
Q ss_pred ccccccceEeeccc--ccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 174 EILVTGIKVVDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 174 e~l~TGIraID~L~--pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
+.+.||+..+|-++ -+-+|+-++|+|++|+|||||+..++...
T Consensus 5 ~~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 5 GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp CEECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999877 68899999999999999999999988643
No 23
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.62 E-value=3.9e-05 Score=64.31 Aligned_cols=39 Identities=33% Similarity=0.396 Sum_probs=36.8
Q ss_pred ccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHH
Q psy17544 176 LVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 176 l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
+.||+..+|-++. +-+|+-+.|.|++|+|||||+.+++.
T Consensus 2 i~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 2 LSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999995 99999999999999999999999987
No 24
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.61 E-value=4.3e-05 Score=65.06 Aligned_cols=62 Identities=26% Similarity=0.345 Sum_probs=46.4
Q ss_pred ccccccceEeeccc--ccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHH
Q psy17544 174 EILVTGIKVVDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREG 236 (266)
Q Consensus 174 e~l~TGIraID~L~--pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv 236 (266)
+.+.||++.+|-++ -+-+|+-+.|.|++|+|||+|+.+++.+.+.. +.-++|...-+..+++
T Consensus 3 ~~i~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-~~~v~~~~~e~~~~~~ 66 (247)
T 2dr3_A 3 RRVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKM-GEPGIYVALEEHPVQV 66 (247)
T ss_dssp CEECCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEESSSCHHHH
T ss_pred ccccCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccCCHHHH
Confidence 35789999999987 47799999999999999999999998876543 3345554443333333
No 25
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.57 E-value=5.1e-05 Score=64.60 Aligned_cols=42 Identities=29% Similarity=0.320 Sum_probs=38.7
Q ss_pred ccccccceEeeccc--ccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 174 EILVTGIKVVDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 174 e~l~TGIraID~L~--pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+.+.||+..+|-++ .+-+|+-++|.|++|+|||||+.+++.+
T Consensus 4 ~~i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 4 IQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp CEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 56889999999999 4889999999999999999999999875
No 26
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.25 E-value=0.00013 Score=67.89 Aligned_cols=55 Identities=13% Similarity=0.207 Sum_probs=44.9
Q ss_pred ccccccceEeecccc------cccCceeeeecCCCccHHHHHHHHHHHHHhcC-CcEEEEEee
Q psy17544 174 EILVTGIKVVDLLAP------YAKGGKIGLFGGAGVGKTVLIMELINNVAKAH-GGYSVFAGV 229 (266)
Q Consensus 174 e~l~TGIraID~L~p------igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~-~~v~V~alI 229 (266)
+.+.||+..+|.++. +-+| ++.|+|++|+|||+|+.+++.+.++.. +..++|.-.
T Consensus 5 ~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~ 66 (333)
T 3io5_A 5 DVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS 66 (333)
T ss_dssp -CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred CEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 457899999999998 7899 999999999999999999998765431 457777543
No 27
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.18 E-value=0.0003 Score=62.57 Aligned_cols=48 Identities=21% Similarity=0.209 Sum_probs=39.5
Q ss_pred ccccc-cceEeecc-cccccCceeeeecCCCccHHHHHHHHHHHHHhcCC
Q psy17544 174 EILVT-GIKVVDLL-APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHG 221 (266)
Q Consensus 174 e~l~T-GIraID~L-~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~ 221 (266)
.-+.| |+.++|-+ +.+-+|+-++|.|++|+|||||+.+++.+.+..++
T Consensus 15 ~~i~t~g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G 64 (296)
T 1cr0_A 15 VGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG 64 (296)
T ss_dssp CCBCCCSCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSC
T ss_pred CCcccCCHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC
Confidence 45678 99888755 46889999999999999999999999987654434
No 28
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.06 E-value=0.00034 Score=63.67 Aligned_cols=44 Identities=32% Similarity=0.346 Sum_probs=40.0
Q ss_pred cccccccceEeeccc--ccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 173 QEILVTGIKVVDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 173 ~e~l~TGIraID~L~--pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
.+.+.||+..+|-++ -+-+|+-+.|+|++|+|||+|+.+++.+.
T Consensus 86 ~~~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 86 VKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp CCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 567899999999998 58899999999999999999999999864
No 29
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.00 E-value=0.00084 Score=59.28 Aligned_cols=47 Identities=23% Similarity=0.344 Sum_probs=39.7
Q ss_pred cccccccccceEeecccc-cccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544 171 VEQEILVTGIKVVDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNVA 217 (266)
Q Consensus 171 ~~~e~l~TGIraID~L~p-igkGQr~gIfgg~G~GKT~L~~~ii~~~a 217 (266)
...+.+.||+..+|-++. +-+|+-+.|+|++|+|||||+.+++...+
T Consensus 8 ~~~~~i~tg~~~ld~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 8 NILEAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp CHHHHHHSCCCCCCEEETTEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CHHHHhcCCCCChheeECCccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 346778899998887764 55999999999999999999999987654
No 30
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.97 E-value=0.0004 Score=64.97 Aligned_cols=53 Identities=32% Similarity=0.606 Sum_probs=43.7
Q ss_pred ccccccceEeecccc---cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEE
Q psy17544 174 EILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 227 (266)
Q Consensus 174 e~l~TGIraID~L~p---igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~a 227 (266)
+.+.||+..+|-++. +-+|.-+.|+|++|+|||||+.+++.+.+. .+..++|.
T Consensus 40 ~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~-~gg~VlyI 95 (356)
T 3hr8_A 40 EVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK-MGGVAAFI 95 (356)
T ss_dssp CEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred ceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEE
Confidence 567899999999998 779999999999999999999999987543 33344443
No 31
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.93 E-value=0.00048 Score=63.95 Aligned_cols=56 Identities=25% Similarity=0.461 Sum_probs=44.8
Q ss_pred cccccccceEeecccc---cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEee
Q psy17544 173 QEILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 229 (266)
Q Consensus 173 ~e~l~TGIraID~L~p---igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alI 229 (266)
.+.+.||+..+|-++. +-+|.-+.|+|++|+|||||+.+++.+.++. +..++|.-.
T Consensus 39 ~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~-g~~vlyi~~ 97 (349)
T 2zr9_A 39 ISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA-GGIAAFIDA 97 (349)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEES
T ss_pred CCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEEC
Confidence 4578999999999987 5599999999999999999999999876543 334455443
No 32
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.88 E-value=0.00087 Score=61.67 Aligned_cols=44 Identities=25% Similarity=0.154 Sum_probs=40.1
Q ss_pred cccccccceEeeccc--ccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 173 QEILVTGIKVVDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 173 ~e~l~TGIraID~L~--pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
.+.+.||+..+|-++ -+-+|+-+.|+|++|+|||+|+.+++.+.
T Consensus 101 ~~~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 101 VFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp CCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred cceeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999998 48899999999999999999999999864
No 33
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.82 E-value=0.0007 Score=64.16 Aligned_cols=48 Identities=31% Similarity=0.299 Sum_probs=41.4
Q ss_pred cccccccccccceEeeccc--ccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 169 MSVEQEILVTGIKVVDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 169 R~~~~e~l~TGIraID~L~--pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
+......+.||+..+|-++ -+-+|+-+.|+|++|+|||||+.+++.+.
T Consensus 153 ~~~~~~~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 153 RRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp HHHTSCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hhccCCccccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHh
Confidence 3334578999999999998 58899999999999999999999887653
No 34
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.82 E-value=0.00071 Score=61.46 Aligned_cols=46 Identities=15% Similarity=0.271 Sum_probs=40.1
Q ss_pred ccccccceEeecccc-cccCceeeeecCCCccHHHHHHHHHHHHHhc
Q psy17544 174 EILVTGIKVVDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNVAKA 219 (266)
Q Consensus 174 e~l~TGIraID~L~p-igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~ 219 (266)
..+.||+..+|-++- +-+|+-+.|.|.+|+|||+|+.+++.+.+..
T Consensus 49 ~~i~TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~ 95 (315)
T 3bh0_A 49 TGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN 95 (315)
T ss_dssp CSBCCSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCccCChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 467899999998874 7799999999999999999999999886543
No 35
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.78 E-value=0.00079 Score=62.76 Aligned_cols=46 Identities=24% Similarity=0.420 Sum_probs=41.1
Q ss_pred cccccccceEeecccc---cccCceeeeecCCCccHHHHHHHHHHHHHh
Q psy17544 173 QEILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAK 218 (266)
Q Consensus 173 ~e~l~TGIraID~L~p---igkGQr~gIfgg~G~GKT~L~~~ii~~~a~ 218 (266)
.+.+.||+..+|-++. +-+|.-+.|.|++|+|||+|+.+++.+.++
T Consensus 41 ~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~ 89 (356)
T 1u94_A 41 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 89 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4578899999999987 779999999999999999999999987654
No 36
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.73 E-value=0.00038 Score=64.43 Aligned_cols=46 Identities=30% Similarity=0.291 Sum_probs=40.3
Q ss_pred cccccccccceEeeccc--ccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 171 VEQEILVTGIKVVDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 171 ~~~e~l~TGIraID~L~--pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
...+.+.||+..+|-++ .+-+|+-+.|+|++|+|||||+.+++.+.
T Consensus 108 ~~~~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 108 ATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HTCCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred ccCCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33567899999999985 57799999999999999999999998764
No 37
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.67 E-value=0.0011 Score=59.94 Aligned_cols=44 Identities=20% Similarity=0.118 Sum_probs=39.8
Q ss_pred ccccccccceEeeccc--ccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 172 EQEILVTGIKVVDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 172 ~~e~l~TGIraID~L~--pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
..+.+.||+..+|-++ -+-+|+-+.|+|++|+|||+|+.+++.+
T Consensus 76 ~~~~i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 76 TVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TCCEECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeecCCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999998 4779999999999999999999999986
No 38
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.64 E-value=0.0014 Score=62.44 Aligned_cols=48 Identities=23% Similarity=0.354 Sum_probs=41.5
Q ss_pred ccccccceEeecccc-cccCceeeeecCCCccHHHHHHHHHHHHHhcCC
Q psy17544 174 EILVTGIKVVDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHG 221 (266)
Q Consensus 174 e~l~TGIraID~L~p-igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~ 221 (266)
..+.||+..+|-++- +-+|+-+.|.|++|+|||+|+.+++.+.+..++
T Consensus 184 ~~i~tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g 232 (454)
T 2r6a_A 184 TGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN 232 (454)
T ss_dssp CSBCCSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC
Confidence 568899999998873 779999999999999999999999998764433
No 39
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.59 E-value=0.0011 Score=54.36 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=24.2
Q ss_pred ccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 186 LAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|..+.+|+.++|.|++|+|||||+..++.
T Consensus 3 m~~i~~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 3 MTDDLGGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp ---CCTTEEEEEEECTTSCHHHHHHHHHT
T ss_pred ccCCCCCeEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999999999998865
No 40
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.59 E-value=0.0013 Score=54.40 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=23.5
Q ss_pred ccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 188 PYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 188 pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.+.+|+-++|.|++|+|||||+..|+..
T Consensus 3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 3 AMNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3568999999999999999999988763
No 41
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.59 E-value=0.0012 Score=61.74 Aligned_cols=55 Identities=27% Similarity=0.468 Sum_probs=44.4
Q ss_pred cccccccceEeecccc---cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEe
Q psy17544 173 QEILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 228 (266)
Q Consensus 173 ~e~l~TGIraID~L~p---igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~al 228 (266)
.+.+.||+..+|.++. +-+|.-+.|+|++|+|||+|+.+++.+.++. +..++|.-
T Consensus 52 ~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~-g~~vlyi~ 109 (366)
T 1xp8_A 52 VQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKA-GGTCAFID 109 (366)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred CceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC-CCeEEEEE
Confidence 4678899999999997 6699999999999999999999999876543 23344443
No 42
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.57 E-value=0.0012 Score=56.62 Aligned_cols=31 Identities=29% Similarity=0.358 Sum_probs=23.3
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.=+.+-+|+.++|+|++|+|||||+..|+..
T Consensus 16 isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 16 PRGSMNNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp ------CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CceecCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3366789999999999999999999988764
No 43
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.54 E-value=0.0019 Score=52.88 Aligned_cols=29 Identities=28% Similarity=0.494 Sum_probs=25.4
Q ss_pred ccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 188 PYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 188 pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
.+.+|+-++|+|++|+|||+|+..+++..
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999999888764
No 44
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.51 E-value=0.0015 Score=55.19 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=23.0
Q ss_pred ccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 188 PYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 188 pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
++-+|+.++|+|++|+|||||+..|+.-
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 7899999999999999999999987753
No 45
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.43 E-value=0.0021 Score=60.96 Aligned_cols=59 Identities=22% Similarity=0.143 Sum_probs=44.2
Q ss_pred ccccccceEeecccc-cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCc
Q psy17544 174 EILVTGIKVVDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 233 (266)
Q Consensus 174 e~l~TGIraID~L~p-igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~ 233 (266)
..+.||+..+|-++. +-+|+-+.|.|.+|+|||+|+.+++.+.+..++.-++| ...|-.
T Consensus 181 ~~i~tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~-~slE~~ 240 (444)
T 2q6t_A 181 AGVRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGI-YSLEMP 240 (444)
T ss_dssp --CCCSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEE-EESSSC
T ss_pred CcccCCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEE-EECCCC
Confidence 567899999998874 67999999999999999999999999876433333333 334433
No 46
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.32 E-value=0.0024 Score=61.94 Aligned_cols=43 Identities=23% Similarity=0.331 Sum_probs=35.9
Q ss_pred ccccccceEeecc-c-ccccCceeeeecCCCccHHHHHHHHH-HHH
Q psy17544 174 EILVTGIKVVDLL-A-PYAKGGKIGLFGGAGVGKTVLIMELI-NNV 216 (266)
Q Consensus 174 e~l~TGIraID~L-~-pigkGQr~gIfgg~G~GKT~L~~~ii-~~~ 216 (266)
+.+.||+.++|-+ + .+-+|+.++|.|++|+|||||+.+++ .+.
T Consensus 19 ~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl 64 (525)
T 1tf7_A 19 AKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGI 64 (525)
T ss_dssp CEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5577999999765 4 78899999999999999999999853 444
No 47
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.30 E-value=0.0017 Score=56.63 Aligned_cols=34 Identities=15% Similarity=0.290 Sum_probs=28.2
Q ss_pred eEe-ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 181 KVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 181 raI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.++ |.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 19 ~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 344 4447899999999999999999999987654
No 48
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.29 E-value=0.0026 Score=52.57 Aligned_cols=28 Identities=32% Similarity=0.396 Sum_probs=23.6
Q ss_pred ccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 188 PYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 188 pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.+.+|..++|.|++|+|||||+..++..
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999988653
No 49
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.28 E-value=0.0025 Score=52.53 Aligned_cols=30 Identities=27% Similarity=0.322 Sum_probs=26.9
Q ss_pred cccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
+.+.+|+.++|.|+.|+|||||+..|+...
T Consensus 28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 567899999999999999999999888754
No 50
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.26 E-value=0.0024 Score=59.25 Aligned_cols=45 Identities=22% Similarity=0.336 Sum_probs=40.4
Q ss_pred ccccccceEeecccc-cccCceeeeecCCCccHHHHHHHHHHHHHh
Q psy17544 174 EILVTGIKVVDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNVAK 218 (266)
Q Consensus 174 e~l~TGIraID~L~p-igkGQr~gIfgg~G~GKT~L~~~ii~~~a~ 218 (266)
.-+.||+..+|-++. +-+|+=+.|.|.+|+|||+|+.+++.+.+.
T Consensus 27 ~gi~TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~ 72 (338)
T 4a1f_A 27 TGIPTGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN 72 (338)
T ss_dssp CSBCCSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CcccCCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 467899999998874 889999999999999999999999998765
No 51
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.24 E-value=0.0024 Score=53.89 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=24.9
Q ss_pred cccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 189 YAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 189 igkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
..+|+.++|.|++|+|||||+..|+...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999999887754
No 52
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.23 E-value=0.0036 Score=59.87 Aligned_cols=63 Identities=13% Similarity=0.201 Sum_probs=47.3
Q ss_pred cccccccceEeecccc-cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHH
Q psy17544 173 QEILVTGIKVVDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREG 236 (266)
Q Consensus 173 ~e~l~TGIraID~L~p-igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv 236 (266)
...+.||+..+|-++. +-+|+-+.|.|.+|+|||+|+.+++.+.+.. +.-++|.-.-+..+++
T Consensus 177 ~~gi~TG~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSlEms~~ql 240 (444)
T 3bgw_A 177 ITGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLEMGKKEN 240 (444)
T ss_dssp CCSBCCSCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECSSSCTTHH
T ss_pred CCCcCCCcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEECCCCHHHH
Confidence 3567899999998875 7799999999999999999999999987654 3334444333333333
No 53
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.23 E-value=0.0028 Score=53.04 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=23.2
Q ss_pred ccceEeecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 178 TGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 178 TGIraID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
++--..+.+++..+|+.++|.|++|+|||||+..++..
T Consensus 15 ~~~~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 15 TENLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred chhhHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 33345566677788999999999999999999988764
No 54
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.22 E-value=0.0021 Score=58.90 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=28.9
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
|.-+.+-+|+.++|+|++|+|||||+..|+.-.
T Consensus 118 ~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 118 LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 455789999999999999999999999887643
No 55
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.21 E-value=0.0021 Score=56.20 Aligned_cols=31 Identities=23% Similarity=0.490 Sum_probs=26.8
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 23 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 23 GITFSIPEGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3446789999999999999999999987765
No 56
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.15 E-value=0.002 Score=55.82 Aligned_cols=31 Identities=26% Similarity=0.399 Sum_probs=26.8
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 22 ~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 22 GISLSVKKGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEEETTCEEEEEECTTSCHHHHHHHHTT
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4447889999999999999999999986654
No 57
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.13 E-value=0.0022 Score=56.45 Aligned_cols=31 Identities=26% Similarity=0.465 Sum_probs=27.0
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 27 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 27 NINLSIKQGEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3447789999999999999999999987755
No 58
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.11 E-value=0.0025 Score=56.64 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=26.9
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 24 ~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 24 GVSLQARAGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3457789999999999999999999987654
No 59
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.11 E-value=0.003 Score=56.27 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=27.0
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 38 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 38 GLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3447899999999999999999999987764
No 60
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.10 E-value=0.0023 Score=57.07 Aligned_cols=34 Identities=24% Similarity=0.457 Sum_probs=28.4
Q ss_pred eEee-cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 181 KVVD-LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 181 raID-~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.++| .=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 25 ~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 25 ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTS
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 4453 447899999999999999999999987754
No 61
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.10 E-value=0.0028 Score=55.72 Aligned_cols=31 Identities=29% Similarity=0.303 Sum_probs=27.0
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 21 GVNLVVPKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3447899999999999999999999987764
No 62
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.09 E-value=0.0026 Score=56.14 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=27.0
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 25 ~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp EECCEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3457899999999999999999999987754
No 63
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.09 E-value=0.0031 Score=60.54 Aligned_cols=61 Identities=16% Similarity=0.083 Sum_probs=46.1
Q ss_pred ccccc-cceEeecccc-cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCch
Q psy17544 174 EILVT-GIKVVDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTR 234 (266)
Q Consensus 174 e~l~T-GIraID~L~p-igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~r 234 (266)
..+.| |+..+|-++- +-+|+=+.|.|++|+|||+|+.+++.+.+..++.-++|.-.-+..+
T Consensus 222 ~~i~t~G~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~ 284 (503)
T 1q57_A 222 VGLLFSGCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVE 284 (503)
T ss_dssp TCSCCSSCTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHH
T ss_pred CCccccchhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHH
Confidence 46788 9999998874 6689999999999999999999999987644344444444433333
No 64
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.09 E-value=0.0035 Score=54.28 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=23.5
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=+.+.+|..+||.|++|+|||||+..|+.
T Consensus 18 isl~i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 18 LYFQSMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp -----CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 346788999999999999999999988766
No 65
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.08 E-value=0.0037 Score=51.55 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.6
Q ss_pred cCceeeeecCCCccHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+|..++|.|++|+|||||+..|...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 6889999999999999999988764
No 66
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.08 E-value=0.0031 Score=53.11 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=21.7
Q ss_pred cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
+|+.++|.|++|+|||||+..|....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 68999999999999999999887643
No 67
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.07 E-value=0.0022 Score=54.75 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=20.7
Q ss_pred cccccCceeeeecCCCccHHHHHHHHH-H
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELI-N 214 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii-~ 214 (266)
+.+-+|+.++|.|++|+|||||+..|+ .
T Consensus 22 l~v~~G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 22 MLKSVGVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEECCCEEEEECSCC----CHHHHHHC-
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 457789999999999999999999887 5
No 68
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.05 E-value=0.0026 Score=55.63 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=26.7
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 20 DISFEAQPNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred EeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3346788999999999999999999987764
No 69
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.03 E-value=0.0028 Score=56.50 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=26.9
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 42 ~vsl~i~~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 42 GINVHIREGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred eeEEEEcCCCEEEEEcCCCCcHHHHHHHHHc
Confidence 4457789999999999999999999987654
No 70
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.03 E-value=0.0026 Score=57.16 Aligned_cols=33 Identities=24% Similarity=0.499 Sum_probs=27.9
Q ss_pred Ee-ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 182 VV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 182 aI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
++ |.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 23 ~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 44 4447899999999999999999999987654
No 71
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.03 E-value=0.0028 Score=56.21 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=26.8
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 33 ~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 33 GISFEIEEGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3447789999999999999999999987754
No 72
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.01 E-value=0.0027 Score=55.11 Aligned_cols=31 Identities=29% Similarity=0.542 Sum_probs=26.8
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 26 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 26 DINFKIERGQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3446788999999999999999999987764
No 73
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.01 E-value=0.003 Score=56.05 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=26.8
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 38 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 38 SINFFIPSGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3446788999999999999999999987765
No 74
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.01 E-value=0.0031 Score=59.02 Aligned_cols=34 Identities=29% Similarity=0.454 Sum_probs=29.1
Q ss_pred eEe-ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 181 KVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 181 raI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.++ |.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 18 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhc
Confidence 455 5567899999999999999999999987764
No 75
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.01 E-value=0.003 Score=56.45 Aligned_cols=31 Identities=29% Similarity=0.330 Sum_probs=26.9
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 37 ~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 37 GLTFTLYPGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3446789999999999999999999987754
No 76
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.00 E-value=0.0028 Score=55.42 Aligned_cols=31 Identities=23% Similarity=0.408 Sum_probs=26.7
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 24 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 24 GIDLKVPRGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3446789999999999999999999987654
No 77
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.99 E-value=0.0078 Score=55.30 Aligned_cols=42 Identities=29% Similarity=0.356 Sum_probs=31.8
Q ss_pred ccccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEE
Q psy17544 186 LAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 227 (266)
Q Consensus 186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~a 227 (266)
-+.+.+|+.++|.|++|+|||||+..++.......+.+.|.+
T Consensus 49 ~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~ 90 (337)
T 2qm8_A 49 LPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp GGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence 367899999999999999999999988764322233355544
No 78
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.99 E-value=0.0026 Score=55.03 Aligned_cols=31 Identities=26% Similarity=0.509 Sum_probs=26.5
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 27 ~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 27 RITMTIEKGNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp EEEEEEETTCCEEEECCTTSSHHHHHHHHTT
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3346788999999999999999999987654
No 79
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.97 E-value=0.005 Score=57.20 Aligned_cols=44 Identities=25% Similarity=0.168 Sum_probs=36.9
Q ss_pred ccccccccceEeeccc-ccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 172 EQEILVTGIKVVDLLA-PYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 172 ~~e~l~TGIraID~L~-pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+...+.||+..+|-++ -+-+|.-+.|+|++|+|||+|+.+++.+
T Consensus 102 i~~~i~TGi~~LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 102 LTGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SSTTCCSBCCEEEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred hhhccccCcHHHHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4555779999999988 2337778899999999999999999875
No 80
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.97 E-value=0.0029 Score=56.88 Aligned_cols=31 Identities=39% Similarity=0.417 Sum_probs=27.0
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 39 ~isl~i~~Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 39 KISWQIAKGDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4457889999999999999999999987654
No 81
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.96 E-value=0.0032 Score=55.94 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=26.8
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 25 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 25 NVSLVINEGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3447899999999999999999999987654
No 82
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.95 E-value=0.0059 Score=54.20 Aligned_cols=33 Identities=33% Similarity=0.376 Sum_probs=27.9
Q ss_pred eecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 183 ID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
++-+. +-+|+.++|.|++|+|||||+..++...
T Consensus 17 l~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 17 VLELC-HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp HHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred HHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 44444 7899999999999999999999888754
No 83
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.93 E-value=0.0031 Score=55.75 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=26.8
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 18 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 18 PLSGEVRAGEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4446789999999999999999999987654
No 84
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.91 E-value=0.0039 Score=58.83 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=29.1
Q ss_pred ceEe-ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 180 IKVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 180 IraI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
..++ |.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHc
Confidence 3444 4557899999999999999999999987764
No 85
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.91 E-value=0.0032 Score=51.71 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=22.9
Q ss_pred cccccCceeeeecCCCccHHHHHHH
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIME 211 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ 211 (266)
+.+.+|+-++|+|++|+|||||+..
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHH
Confidence 5678999999999999999999984
No 86
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.90 E-value=0.0032 Score=55.70 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=26.3
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 24 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 24 LNFDLNKGDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp EEEEEETTCEEEEECCSSSSHHHHHHHHTT
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 346789999999999999999999987654
No 87
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.89 E-value=0.0041 Score=58.12 Aligned_cols=31 Identities=26% Similarity=0.420 Sum_probs=27.5
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHHHHHHC
Confidence 5567899999999999999999999987764
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.88 E-value=0.0056 Score=59.26 Aligned_cols=58 Identities=22% Similarity=0.331 Sum_probs=42.7
Q ss_pred ccccccceEeeccc--ccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCc
Q psy17544 174 EILVTGIKVVDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 233 (266)
Q Consensus 174 e~l~TGIraID~L~--pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~ 233 (266)
+.+.||+.-+|-++ .+-+|.-++|.|++|+|||||+.+++.... .++..++| ..+|..
T Consensus 261 ~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~-~~G~~vi~-~~~ee~ 320 (525)
T 1tf7_A 261 VRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENAC-ANKERAIL-FAYEES 320 (525)
T ss_dssp CEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHH-TTTCCEEE-EESSSC
T ss_pred ceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-hCCCCEEE-EEEeCC
Confidence 45678887777664 788999999999999999999999987653 34443444 344443
No 89
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.88 E-value=0.0045 Score=51.70 Aligned_cols=27 Identities=37% Similarity=0.442 Sum_probs=22.9
Q ss_pred cccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 189 YAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 189 igkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.-+|..++|.|++|+|||||+..|+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999988764
No 90
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.87 E-value=0.0042 Score=58.35 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=27.3
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 29 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHHc
Confidence 4557899999999999999999999987764
No 91
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.86 E-value=0.0043 Score=58.07 Aligned_cols=31 Identities=23% Similarity=0.463 Sum_probs=27.3
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred eeEEEECCCCEEEEECCCCchHHHHHHHHhc
Confidence 4557899999999999999999999987764
No 92
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.85 E-value=0.0041 Score=58.10 Aligned_cols=31 Identities=26% Similarity=0.483 Sum_probs=27.3
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 33 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 33 GVSFQIREGEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEECCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4557889999999999999999999987764
No 93
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.84 E-value=0.0094 Score=54.07 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=27.2
Q ss_pred cccccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELINNVA 217 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a 217 (266)
+.+.+|+.++|+|++|+|||||+..|+....
T Consensus 95 ~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 95 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp CCSSSCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999998887543
No 94
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.83 E-value=0.0037 Score=58.13 Aligned_cols=31 Identities=23% Similarity=0.392 Sum_probs=27.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 18 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp EEEEEECTTCEEEEECCCTHHHHHHHHHHHT
T ss_pred eeEEEEcCCCEEEEECCCCccHHHHHHHHHc
Confidence 4457899999999999999999999987764
No 95
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.79 E-value=0.0044 Score=58.12 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=27.4
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEEcCCCEEEEECCCCcHHHHHHHHHHc
Confidence 5557899999999999999999999987764
No 96
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.76 E-value=0.0061 Score=50.86 Aligned_cols=29 Identities=28% Similarity=0.148 Sum_probs=23.3
Q ss_pred cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+.+.+|..+.|.|++|+||||++..++..
T Consensus 20 ~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 20 FQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred EecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999988864
No 97
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.71 E-value=0.0038 Score=57.08 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=27.2
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|++++|+|++|+|||||+..|..
T Consensus 72 ~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 72 DVSFTVMPGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEEECTTCEEEEESSSCHHHHHHHHHHTT
T ss_pred eeeEEEcCCCEEEEECCCCchHHHHHHHHHc
Confidence 3447899999999999999999999987765
No 98
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.70 E-value=0.005 Score=58.16 Aligned_cols=31 Identities=26% Similarity=0.628 Sum_probs=27.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 39 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 39 NISFSISPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred ceeEEEcCCCEEEEECCCCChHHHHHHHHhC
Confidence 3446899999999999999999999987764
No 99
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.67 E-value=0.0037 Score=58.18 Aligned_cols=31 Identities=23% Similarity=0.516 Sum_probs=27.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 23 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 23 NVNINIENGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp EEEEEECTTCEEEEECSCHHHHHHHHHHHHT
T ss_pred ceEEEECCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4457889999999999999999999987764
No 100
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.66 E-value=0.0057 Score=57.43 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=29.3
Q ss_pred ceEe-ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 180 IKVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 180 IraI-D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
+.++ |.=+.+.+|+.++|+|++|+|||||+..|..
T Consensus 41 ~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhc
Confidence 4455 4558899999999999999999999986654
No 101
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.64 E-value=0.0063 Score=51.50 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.6
Q ss_pred CceeeeecCCCccHHHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
|++++|+|++|+|||||+..|+...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 7899999999999999999888754
No 102
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.62 E-value=0.0032 Score=52.02 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=28.2
Q ss_pred eEeecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 181 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 181 raID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.+++- +++.+|.+++|+|.+|+|||||+..++.
T Consensus 16 ~~l~~-~~~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 16 PDIRH-LPSDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SSGGG-SSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCHhH-CCCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34555 8999999999999999999999987764
No 103
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.60 E-value=0.005 Score=55.70 Aligned_cols=31 Identities=29% Similarity=0.542 Sum_probs=26.7
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|+.++|+|++|+|||||+..|+.
T Consensus 56 ~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 56 DINFKIERGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHTT
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3446788999999999999999999987654
No 104
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.56 E-value=0.013 Score=57.30 Aligned_cols=33 Identities=30% Similarity=0.202 Sum_probs=28.4
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA 217 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a 217 (266)
.-+.+.+|+.++|+|++|+|||||+..|+....
T Consensus 286 Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 286 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp CCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceeeccCCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 335788999999999999999999998887543
No 105
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.56 E-value=0.0056 Score=54.56 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=25.1
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=+.+- |+.++|+|++|+|||||+..|+.
T Consensus 24 vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 24 INLEVN-GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EEEEEC-SSEEEEECCTTSSHHHHHHHHTT
T ss_pred eeEEEC-CEEEEEECCCCCCHHHHHHHHhC
Confidence 346778 99999999999999999987764
No 106
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.56 E-value=0.013 Score=53.20 Aligned_cols=38 Identities=32% Similarity=0.382 Sum_probs=28.8
Q ss_pred ccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEe
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 228 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~al 228 (266)
++|+.++|+|++|+|||||+..|+.... .++.-+.+..
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~-~~~g~V~l~g 137 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLGKKVMFCA 137 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHH-TTTCCEEEEC
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEEEe
Confidence 4799999999999999999999887553 3334344443
No 107
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.56 E-value=0.0032 Score=57.61 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=29.1
Q ss_pred eecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 183 ID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
+|.|+++-+|+.++|+|++|+|||||+..|..
T Consensus 164 ~~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 164 LADIIPHFQDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp CTTTGGGGTTSEEEEEESHHHHHHHHHHHHCC
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHhcc
Confidence 67889999999999999999999999987754
No 108
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.53 E-value=0.0055 Score=52.65 Aligned_cols=27 Identities=30% Similarity=0.237 Sum_probs=24.0
Q ss_pred cccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 189 YAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 189 igkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+-+|+.++|+|++|+|||||+..|+.-
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 378999999999999999999877653
No 109
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.49 E-value=0.0078 Score=49.76 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=20.8
Q ss_pred CceeeeecCCCccHHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.-++|.|++|+|||||+..|...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 456899999999999999988764
No 110
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.46 E-value=0.0051 Score=49.86 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=23.8
Q ss_pred cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
+|+-++|+|++|+|||+|+..+++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999888754
No 111
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.46 E-value=0.0091 Score=49.82 Aligned_cols=29 Identities=31% Similarity=0.288 Sum_probs=25.3
Q ss_pred ccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 186 LAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.-.+.+|..++|.|++|+|||||+..+..
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34577899999999999999999998876
No 112
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.45 E-value=0.0078 Score=50.21 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=24.0
Q ss_pred ccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
..++.+.|.|++|+|||+|+..+++..
T Consensus 50 ~~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 50 DGVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp CSCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999888754
No 113
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.40 E-value=0.009 Score=51.63 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=22.7
Q ss_pred cccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 189 YAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 189 igkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+-+|+-++|.|++|+|||||+..|...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 457999999999999999999987653
No 114
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.39 E-value=0.017 Score=53.95 Aligned_cols=41 Identities=27% Similarity=0.335 Sum_probs=31.0
Q ss_pred cccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEe
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 228 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~al 228 (266)
+.+.+|+.++|+|++|+|||||+..|+... ..++.-+.+..
T Consensus 152 l~~~~g~vi~lvG~nGsGKTTll~~Lag~l-~~~~G~V~l~g 192 (359)
T 2og2_A 152 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRL-KNEGTKVLMAA 192 (359)
T ss_dssp CCSSSSEEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEEC
T ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHhhc-cccCCEEEEec
Confidence 467899999999999999999999888754 33333343333
No 115
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.38 E-value=0.012 Score=48.43 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=24.7
Q ss_pred ccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 188 PYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 188 pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+..+|..++|.|++|+||||++..++..
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 5568899999999999999999988764
No 116
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.38 E-value=0.0096 Score=47.86 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.8
Q ss_pred cCceeeeecCCCccHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.|..++|.|++|+|||||+..++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999988763
No 117
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.37 E-value=0.0088 Score=54.99 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=24.7
Q ss_pred cccc--CceeeeecCCCccHHHHHHHHHHH
Q psy17544 188 PYAK--GGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 188 pigk--GQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
++-+ |++++|+|++|+|||||+..|+..
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred HHHHhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567 999999999999999999988764
No 118
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.31 E-value=0.011 Score=54.00 Aligned_cols=29 Identities=24% Similarity=0.169 Sum_probs=25.5
Q ss_pred ccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 188 PYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 188 pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
.+.+|+.++|.|++|+|||||+..|..-.
T Consensus 86 ~~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 86 DRPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 47899999999999999999998877643
No 119
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.30 E-value=0.011 Score=47.77 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=22.8
Q ss_pred ccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
-+|..++|.|++|+|||||+..++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 35889999999999999999988763
No 120
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.26 E-value=0.011 Score=49.37 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=20.2
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.+++|.|++|+|||||+..|+..
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999888764
No 121
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.25 E-value=0.012 Score=50.42 Aligned_cols=29 Identities=21% Similarity=0.414 Sum_probs=24.3
Q ss_pred cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+|.-+|.-+.|.|++|+|||||+..|+..
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 45568999999999999999999988764
No 122
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.24 E-value=0.012 Score=49.69 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=23.1
Q ss_pred ccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
-+|.-++|.|++|+|||||+..++..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 47889999999999999999988764
No 123
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.23 E-value=0.0084 Score=67.06 Aligned_cols=58 Identities=22% Similarity=0.400 Sum_probs=47.0
Q ss_pred cccccccccceEeecccc---cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEee
Q psy17544 171 VEQEILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 229 (266)
Q Consensus 171 ~~~e~l~TGIraID~L~p---igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alI 229 (266)
...+.+.||+..+|.++. +-+|.-+.|+|++|+|||+|+.+++.+.+ ..+..++|--.
T Consensus 1403 ~~~~~isTG~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~-~~G~~v~Fi~~ 1463 (2050)
T 3cmu_A 1403 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDA 1463 (2050)
T ss_dssp TSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEECT
T ss_pred cccccccCCCHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEEEc
Confidence 346789999999999999 77999999999999999999999988643 34444555443
No 124
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.21 E-value=0.025 Score=47.35 Aligned_cols=29 Identities=28% Similarity=0.242 Sum_probs=25.1
Q ss_pred ccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 188 PYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 188 pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
+..+|..++|.|++|+|||||+..+....
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35788999999999999999999887643
No 125
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.17 E-value=0.011 Score=51.88 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=25.6
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+ +.++|+|++|+|||||+..|+.
T Consensus 17 ~isl~i~~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 17 NVDFEMGR-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp EEEEEECS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred eeEEEECC-EEEEEECCCCCCHHHHHHHHhC
Confidence 44467889 9999999999999999987754
No 126
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.15 E-value=0.0067 Score=54.78 Aligned_cols=31 Identities=35% Similarity=0.495 Sum_probs=29.0
Q ss_pred eecccccccCceeeeecCCCccHHHHHHHHH
Q psy17544 183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELI 213 (266)
Q Consensus 183 ID~L~pigkGQr~gIfgg~G~GKT~L~~~ii 213 (266)
||-|+.+-+|+..+|.|++|+|||||+..|.
T Consensus 156 i~~L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 6888889999999999999999999999887
No 127
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.15 E-value=0.019 Score=51.76 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=30.2
Q ss_pred ccccCceeeeecCCCccHHHHHHHHHHHHH--hcCCcEEEEEeec
Q psy17544 188 PYAKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVG 230 (266)
Q Consensus 188 pigkGQr~gIfgg~G~GKT~L~~~ii~~~a--~~~~~v~V~alIG 230 (266)
+..+|..+||.|++|+|||||+..|..... -..+.+.++.+=|
T Consensus 76 ~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~ 120 (308)
T 1sq5_A 76 GQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG 120 (308)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCC
Confidence 458999999999999999999998776432 1223355544444
No 128
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.14 E-value=0.015 Score=56.86 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=27.9
Q ss_pred EeecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 182 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 182 aID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
+++.+..+.+|+.++|+|++|+|||||+..|+-
T Consensus 37 ~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 37 VLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred cccCcCcCCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 455555789999999999999999999987654
No 129
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.11 E-value=0.061 Score=49.38 Aligned_cols=42 Identities=33% Similarity=0.266 Sum_probs=30.8
Q ss_pred ccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeec
Q psy17544 188 PYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVG 230 (266)
Q Consensus 188 pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIG 230 (266)
.-.+|+.++|.|++|+|||||+..|+.... .++.-+.+....
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~-~~~g~V~l~g~D 166 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK-NHGFSVVIAASD 166 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEEC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCCEEEEEeec
Confidence 346899999999999999999999987653 333334444433
No 130
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.10 E-value=0.014 Score=49.01 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.8
Q ss_pred cCceeeeecCCCccHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
++.+++|.|++|+||||++..++..
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999988764
No 131
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.10 E-value=0.015 Score=57.82 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=28.8
Q ss_pred EeecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 182 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 182 aID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.++.+..+.+|+.++|+|++|+|||||+..|+-
T Consensus 93 ~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 93 KLHRLPTPRPGQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred eecCCCCCCCCCEEEEECCCCChHHHHHHHHhc
Confidence 566677889999999999999999999987654
No 132
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.07 E-value=0.014 Score=48.73 Aligned_cols=27 Identities=33% Similarity=0.365 Sum_probs=24.3
Q ss_pred ccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
-+|+.+.|.|++|+|||||+..++...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999988754
No 133
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.04 E-value=0.013 Score=64.68 Aligned_cols=63 Identities=22% Similarity=0.383 Sum_probs=48.6
Q ss_pred cccccccccccceEeecccc---cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCC
Q psy17544 169 MSVEQEILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGER 232 (266)
Q Consensus 169 R~~~~e~l~TGIraID~L~p---igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER 232 (266)
+.+..+.+.||+..+|-++. +-+|+-+.|+|++|+|||+|+.+++.+.+. .+.-++|.-.-+.
T Consensus 8 ~~~~~~~isTGi~~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~~-~G~~vlYI~te~~ 73 (1706)
T 3cmw_A 8 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHA 73 (1706)
T ss_dssp ----CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEECTTSC
T ss_pred ccccCcccccCcHHHHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhh-CCCceEEEEecCc
Confidence 34445778999999999975 889999999999999999999999987543 3445677666554
No 134
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.02 E-value=0.016 Score=48.51 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=24.4
Q ss_pred cccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 189 YAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 189 igkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+++|.-+.|.|++|+|||||+..++..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999999999988764
No 135
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.95 E-value=0.014 Score=47.93 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=20.7
Q ss_pred CceeeeecCCCccHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|+-++|.|++|+|||||+..|+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 67789999999999999998865
No 136
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.89 E-value=0.012 Score=56.69 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=26.8
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+|++++|+|++|+|||||+..|+.-
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 34455679999999999999999999987764
No 137
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.88 E-value=0.068 Score=43.31 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=20.9
Q ss_pred ceeeeecCCCccHHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
..+.|.|++|+|||+|+..+++..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 349999999999999999888753
No 138
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.85 E-value=0.016 Score=49.86 Aligned_cols=27 Identities=41% Similarity=0.533 Sum_probs=22.4
Q ss_pred cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+.+.+| ++|+|++|+|||+|+..++..
T Consensus 46 ~~~~~g--~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 46 ARIPKG--VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp CCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 345566 999999999999999988763
No 139
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.83 E-value=0.017 Score=49.81 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=22.4
Q ss_pred cCceeeeecCCCccHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
++..++|+|++|+|||||+..|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999988754
No 140
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.82 E-value=0.063 Score=44.34 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=24.0
Q ss_pred cccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 189 YAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 189 igkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
.-+|-.+.|.|++|+||||++..++...
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568889999999999999999998754
No 141
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.79 E-value=0.017 Score=51.33 Aligned_cols=26 Identities=35% Similarity=0.471 Sum_probs=22.1
Q ss_pred ccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 188 PYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 188 pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.+.+| ++|+|++|+|||+|+..++..
T Consensus 42 ~~~~G--vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 42 VTPAG--VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp CCCSE--EEEESSTTSCHHHHHHHHHHH
T ss_pred CCCCe--EEEECCCCCcHHHHHHHHHHH
Confidence 45567 999999999999999988763
No 142
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.73 E-value=0.018 Score=46.84 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.6
Q ss_pred ccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
-+|..+.|.|++|+||||++..++..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999988764
No 143
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.69 E-value=0.014 Score=57.18 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=27.7
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+|+.++|.|++|+|||||+..+..-
T Consensus 361 ~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 361 HVSFSIPQGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34467889999999999999999999987764
No 144
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.67 E-value=0.018 Score=63.50 Aligned_cols=58 Identities=22% Similarity=0.392 Sum_probs=47.2
Q ss_pred cccccccceEeecccc---cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecC
Q psy17544 173 QEILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE 231 (266)
Q Consensus 173 ~e~l~TGIraID~L~p---igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGE 231 (266)
.+.+.||+..+|-++. +-+|.-+.|.|++|+|||+|+.+++.+.++ .+..++|.-.-+
T Consensus 361 ~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~-~G~~vlyis~E~ 421 (1706)
T 3cmw_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEH 421 (1706)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEECTTS
T ss_pred CceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEccC
Confidence 4678999999999997 779999999999999999999999988654 334455544333
No 145
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.65 E-value=0.02 Score=56.91 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=28.2
Q ss_pred EeecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 182 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 182 aID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
+++.+..+-+|+.++|+|++|+|||||+..|+-
T Consensus 107 ~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 107 VLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHTT
T ss_pred eeCCCCCCCCCCEEEEECCCCChHHHHHHHHhC
Confidence 566665789999999999999999999986654
No 146
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.65 E-value=0.035 Score=51.63 Aligned_cols=29 Identities=31% Similarity=0.411 Sum_probs=26.0
Q ss_pred cccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544 189 YAKGGKIGLFGGAGVGKTVLIMELINNVA 217 (266)
Q Consensus 189 igkGQr~gIfgg~G~GKT~L~~~ii~~~a 217 (266)
+-+|+.++|.|++|+|||||+..|+....
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 67899999999999999999999887553
No 147
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.65 E-value=0.0092 Score=53.68 Aligned_cols=32 Identities=31% Similarity=0.461 Sum_probs=28.8
Q ss_pred eecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 183 ID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
||-++.+-+|+.++|+|++|+|||||+..|+.
T Consensus 160 v~~lf~~l~geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 160 IEELKEYLKGKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp HHHHHHHHSSSEEEEECSTTSSHHHHHHHHST
T ss_pred HHHHHHHhcCCeEEEECCCCCcHHHHHHHhcc
Confidence 67788888999999999999999999987764
No 148
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.57 E-value=0.087 Score=42.84 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=20.2
Q ss_pred eeeeecCCCccHHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
.++|.|++|+||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999988754
No 149
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.56 E-value=0.021 Score=49.81 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=22.6
Q ss_pred ccCceeeeecCCCccHHHHHHHHHH
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
-+|..++|.|++|+|||||+..++.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999998873
No 150
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=94.54 E-value=0.033 Score=49.78 Aligned_cols=65 Identities=6% Similarity=-0.119 Sum_probs=53.5
Q ss_pred cccccceEeecccc--cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHH
Q psy17544 175 ILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLY 240 (266)
Q Consensus 175 ~l~TGIraID~L~p--igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~ 240 (266)
.+.|||..+|-++- +-+|--+.|.|++|+|||+|+.+.+.+.+ ..++.++|...-|...++..-.
T Consensus 2 ~i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~-~~Ge~~~~~~~~e~~~~l~~~~ 68 (260)
T 3bs4_A 2 SLSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKL-KSDNLVGMFSISYPLQLIIRIL 68 (260)
T ss_dssp CBCCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHH-HTTCEEEEEECSSCHHHHHHHH
T ss_pred cCccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHH-HCCCcEEEEEEeCCHHHHHHHH
Confidence 35799999999976 55899999999999999999999888654 3467899999998887766544
No 151
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.52 E-value=0.02 Score=46.31 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.9
Q ss_pred cCceeeeecCCCccHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+|.|++|+|.+|+|||+|+..+..+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999988753
No 152
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.51 E-value=0.1 Score=47.37 Aligned_cols=43 Identities=26% Similarity=0.220 Sum_probs=31.4
Q ss_pred ccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecC
Q psy17544 188 PYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE 231 (266)
Q Consensus 188 pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGE 231 (266)
...+|..++|.|++|+||||++..++...+. ++.-+.+....-
T Consensus 100 ~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~-~g~kV~lv~~D~ 142 (306)
T 1vma_A 100 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD-EGKSVVLAAADT 142 (306)
T ss_dssp CSSSCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEECT
T ss_pred cCCCCeEEEEEcCCCChHHHHHHHHHHHHHh-cCCEEEEEcccc
Confidence 3578899999999999999999999986543 333344444433
No 153
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.45 E-value=0.078 Score=47.76 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=25.1
Q ss_pred ccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELINNVA 217 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~~~a 217 (266)
.+|+.+++.|+.|+||||++..++...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999987654
No 154
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.43 E-value=0.079 Score=47.33 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=23.9
Q ss_pred ccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
..+.-+.|.|++|+|||+|+..+++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 567889999999999999999888754
No 155
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.41 E-value=0.023 Score=49.77 Aligned_cols=27 Identities=41% Similarity=0.533 Sum_probs=22.4
Q ss_pred cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+.+.+| ++|+|++|+|||+|+..++..
T Consensus 70 ~~~~~g--vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 70 ARIPKG--VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CCCCCE--EEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCe--EEEECCCcChHHHHHHHHHHH
Confidence 345566 999999999999999988763
No 156
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.40 E-value=0.011 Score=54.72 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=26.5
Q ss_pred ccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 186 LAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 169 ~~~i~~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 169 RRAVQLERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp HHHHHTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred HHHHhcCCEEEEECCCCCCHHHHHHHHHhc
Confidence 356789999999999999999999988764
No 157
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.30 E-value=0.027 Score=53.36 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=31.1
Q ss_pred eeeeecCCCccHHHHHHHHHHHHHhcCC-cEEEEEeecCCchHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINNVAKAHG-GYSVFAGVGERTREGND 238 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~~a~~~~-~v~V~alIGER~rEv~e 238 (266)
-+.|.|++|+|||+++..+++....... .+.+.+-.+.-.+|+.+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~ 92 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSK 92 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHh
Confidence 8899999999999999999886543322 25555555544444443
No 158
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.29 E-value=0.062 Score=49.04 Aligned_cols=45 Identities=22% Similarity=0.169 Sum_probs=33.1
Q ss_pred cccccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCC
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGER 232 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER 232 (266)
+...+|+.++|.|++|+||||++..++...+. ++.-+.+....-+
T Consensus 100 ~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~-~g~kVllid~D~~ 144 (320)
T 1zu4_A 100 FKENRLNIFMLVGVNGTGKTTSLAKMANYYAE-LGYKVLIAAADTF 144 (320)
T ss_dssp CCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCCS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCc
Confidence 45788999999999999999999999886543 3333444444433
No 159
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.21 E-value=0.019 Score=56.34 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=27.6
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+|++++|.|++|+|||||+..+..-
T Consensus 361 ~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 361 NINLKIPAGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 44467889999999999999999999877663
No 160
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.18 E-value=0.055 Score=50.21 Aligned_cols=28 Identities=18% Similarity=0.358 Sum_probs=24.5
Q ss_pred cccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 189 YAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 189 igkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
..+|+.++|.|++|+|||||+..++...
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 5678899999999999999999887654
No 161
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.18 E-value=0.023 Score=55.59 Aligned_cols=27 Identities=37% Similarity=0.632 Sum_probs=24.2
Q ss_pred ccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 188 PYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 188 pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.+-+|+.++|+|++|+|||||+..|+.
T Consensus 308 ~i~~Ge~~~i~G~NGsGKSTLlk~l~G 334 (538)
T 1yqt_A 308 EIKKGEVIGIVGPNGIGKTTFVKMLAG 334 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 467999999999999999999987764
No 162
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.09 E-value=0.034 Score=44.98 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.3
Q ss_pred cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
+|..+.|.|++|+||||++..++...
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998754
No 163
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.08 E-value=0.037 Score=45.72 Aligned_cols=28 Identities=25% Similarity=0.165 Sum_probs=24.3
Q ss_pred cccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 189 YAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 189 igkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
.-+|..+.|.|++|+||||++..++...
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3468889999999999999999998754
No 164
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.06 E-value=0.058 Score=48.12 Aligned_cols=27 Identities=26% Similarity=0.482 Sum_probs=23.8
Q ss_pred ccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
..++-+.|.|++|+|||+|+..+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 567889999999999999999888754
No 165
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.05 E-value=0.041 Score=43.55 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=23.3
Q ss_pred ccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
..+.-+.|.|++|+|||+|+..+++..
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 456779999999999999999998764
No 166
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.05 E-value=0.015 Score=54.32 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=26.3
Q ss_pred eecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 183 ID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
+|.|....+|+.++|+|++|+|||||+..|+.
T Consensus 206 l~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 206 LKPLEEALTGRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp HHHHHHHHTTSEEEEECCTTSSHHHHHHHHHC
T ss_pred HHHHHHhcCCCEEEEECCCCccHHHHHHHHhc
Confidence 34445556899999999999999999987764
No 167
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.03 E-value=0.034 Score=45.15 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=23.1
Q ss_pred cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
+|..++|.|++|+||||++..+....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999887743
No 168
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.00 E-value=0.065 Score=48.91 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=26.9
Q ss_pred cccccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELINNVA 217 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a 217 (266)
+...+|..++|.|.+|+|||||+..++....
T Consensus 51 ~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 51 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp GGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999886543
No 169
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.99 E-value=0.033 Score=45.75 Aligned_cols=22 Identities=41% Similarity=0.700 Sum_probs=19.9
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|++|+|++|+|||||+..++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999988764
No 170
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.98 E-value=0.019 Score=56.43 Aligned_cols=31 Identities=26% Similarity=0.467 Sum_probs=27.4
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|++++|.|++|+|||||+..|..
T Consensus 362 ~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 362 DFSLSIPSGSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp EEEEEECTTCEEEEECCTTSSSTHHHHHHTT
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4457789999999999999999999987765
No 171
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.98 E-value=0.028 Score=62.98 Aligned_cols=54 Identities=24% Similarity=0.420 Sum_probs=45.1
Q ss_pred cccccccceEeecccc---cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEE
Q psy17544 173 QEILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 227 (266)
Q Consensus 173 ~e~l~TGIraID~L~p---igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~a 227 (266)
.+.+.||+..+|-++. +-+|.=+.|+|++|+|||+|+.+++.+.++. +..++|.
T Consensus 361 ~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~-G~~vlyi 417 (2050)
T 3cmu_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFI 417 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEE
Confidence 4678999999999997 8899999999999999999999999986543 3344443
No 172
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.96 E-value=0.041 Score=44.63 Aligned_cols=26 Identities=42% Similarity=0.362 Sum_probs=22.9
Q ss_pred ccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
-++..+.|.|++|+||||++..++..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 46788999999999999999988764
No 173
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.95 E-value=0.034 Score=44.13 Aligned_cols=22 Identities=23% Similarity=0.080 Sum_probs=19.6
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.+.|.|++|+||||++..++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988764
No 174
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.89 E-value=0.035 Score=50.32 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.6
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
..++|+|++|+|||||+..+++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 67899999999999999988764
No 175
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.88 E-value=0.11 Score=46.63 Aligned_cols=50 Identities=24% Similarity=0.199 Sum_probs=31.4
Q ss_pred cCc--eeeeecCCCccHHHHHHHHHHHHHhcC-CcEEEEEeecCCchHHHHHHHH
Q psy17544 191 KGG--KIGLFGGAGVGKTVLIMELINNVAKAH-GGYSVFAGVGERTREGNDLYHE 242 (266)
Q Consensus 191 kGQ--r~gIfgg~G~GKT~L~~~ii~~~a~~~-~~v~V~alIGER~rEv~ef~~~ 242 (266)
.+. -+.|.|++|+|||+|+..+++.. ..+ +..+++.-+. ......++++.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~-~~~~~~~~~~i~~~-~~~~~~~~~~~ 93 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELY-KDKTTARFVYINGF-IYRNFTAIIGE 93 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHH-TTSCCCEEEEEETT-TCCSHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH-hhhcCeeEEEEeCc-cCCCHHHHHHH
Confidence 445 79999999999999999888753 322 2244444433 33333444444
No 176
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.88 E-value=0.04 Score=45.95 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.8
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
++.|.|++|+||||++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988764
No 177
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.87 E-value=0.024 Score=55.57 Aligned_cols=28 Identities=32% Similarity=0.580 Sum_probs=25.1
Q ss_pred cccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 289 ~~i~~Gei~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 289 GEAKEGEIIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred ceECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999999999987765
No 178
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.86 E-value=0.091 Score=45.26 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=26.2
Q ss_pred eeccc-ccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 183 VDLLA-PYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 183 ID~L~-pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
.|..+ ...+|..+.|.|++|+||||++..++...
T Consensus 16 ~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 16 ENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp ----CCCCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34444 36689999999999999999999998765
No 179
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.85 E-value=0.033 Score=45.72 Aligned_cols=22 Identities=41% Similarity=0.700 Sum_probs=19.9
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+++|+|++|+|||||+..++.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999988764
No 180
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.84 E-value=0.073 Score=48.93 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=22.9
Q ss_pred cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
.+.+++|.|.+|+|||||+..++...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 37789999999999999999998753
No 181
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.81 E-value=0.029 Score=55.78 Aligned_cols=27 Identities=37% Similarity=0.630 Sum_probs=24.2
Q ss_pred ccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 188 PYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 188 pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.+-+|+.++|+|++|+|||||+..|+.
T Consensus 378 ~v~~Gei~~i~G~NGsGKSTLlk~l~G 404 (607)
T 3bk7_A 378 EIRKGEVIGIVGPNGIGKTTFVKMLAG 404 (607)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhc
Confidence 467999999999999999999987764
No 182
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.78 E-value=0.15 Score=41.08 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.3
Q ss_pred eeeeecCCCccHHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
.++|.|++|+||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998754
No 183
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.76 E-value=0.098 Score=42.65 Aligned_cols=33 Identities=27% Similarity=0.258 Sum_probs=25.3
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
|.-...-+|..+.|.|.+|+||||++..++...
T Consensus 5 ~~~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 5 TTYKCIEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp ---CCCSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 333334578889999999999999999988754
No 184
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.75 E-value=0.026 Score=55.62 Aligned_cols=30 Identities=30% Similarity=0.491 Sum_probs=26.5
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=+.+-+|++++|.|++|+|||||+..+..
T Consensus 374 isl~i~~G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 374 ITFHIKPGQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp EEEECCTTCEEEEECCTTSSTTHHHHHHTT
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 346789999999999999999999987765
No 185
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.73 E-value=0.042 Score=45.95 Aligned_cols=22 Identities=23% Similarity=0.361 Sum_probs=19.6
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
++.|.|++|+||||++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988763
No 186
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.68 E-value=0.037 Score=45.74 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=19.1
Q ss_pred eeeeecCCCccHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~ 214 (266)
+++|.|++|+||||++..++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999988765
No 187
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.67 E-value=0.02 Score=56.13 Aligned_cols=31 Identities=29% Similarity=0.432 Sum_probs=26.9
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|++++|.|++|+|||||+..+..
T Consensus 359 ~isl~i~~G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 359 DINLSIEKGETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHTTTTT
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHhc
Confidence 3447899999999999999999999987765
No 188
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.65 E-value=0.025 Score=50.02 Aligned_cols=31 Identities=23% Similarity=0.207 Sum_probs=26.1
Q ss_pred ccccccc---CceeeeecCCCccHHHHHHHHHHH
Q psy17544 185 LLAPYAK---GGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 185 ~L~pigk---GQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.-+.+.+ |..+.|.|++|+||||++..++..
T Consensus 38 ~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 38 KAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp HHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred hhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3345666 999999999999999999988763
No 189
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.60 E-value=0.092 Score=43.23 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=21.5
Q ss_pred ceeeeecCCCccHHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
+-+.|.|++|+|||+|+..+++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 679999999999999999888754
No 190
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.58 E-value=0.042 Score=43.74 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=19.8
Q ss_pred ceeeeecCCCccHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~ 214 (266)
-+++|+|++|+|||+|+..+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3789999999999999998875
No 191
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.55 E-value=0.015 Score=53.35 Aligned_cols=29 Identities=31% Similarity=0.475 Sum_probs=25.7
Q ss_pred cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 166 ~~i~~g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 166 DGIAIGKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HHHHHTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45779999999999999999999988764
No 192
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.52 E-value=0.035 Score=53.06 Aligned_cols=29 Identities=31% Similarity=0.387 Sum_probs=24.7
Q ss_pred ccccccCce--eeeecCCCccHHHHHHHHHH
Q psy17544 186 LAPYAKGGK--IGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 186 L~pigkGQr--~gIfgg~G~GKT~L~~~ii~ 214 (266)
=+.+-+|+. ++|+|++|+|||||+..|+.
T Consensus 34 sl~i~~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 34 NKSVSQGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp HHSCC-CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred ceEecCCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 367889999 99999999999999987754
No 193
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.50 E-value=0.029 Score=47.96 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=23.9
Q ss_pred ccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 188 PYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 188 pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
+.-+|.-++|.|+.|+|||||+..|..
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHh
Confidence 557899999999999999999987765
No 194
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.49 E-value=0.052 Score=44.59 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=23.0
Q ss_pred cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
+|..+.|.|++|+||||++..++...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998754
No 195
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.45 E-value=0.036 Score=58.24 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=27.4
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+.+|++++|.|++|+|||||+..|+.
T Consensus 453 ~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 453 KTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456899999999999999999999998874
No 196
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.43 E-value=0.093 Score=43.75 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=22.9
Q ss_pred cCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINNVA 217 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~~a 217 (266)
+|+-..|.|++|+||||++.+++++..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 477788999999999999988887654
No 197
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.42 E-value=0.071 Score=50.62 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=24.3
Q ss_pred ccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
-+|+-++|.|++|+|||||+..|+...
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 689999999999999999999888754
No 198
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.41 E-value=0.048 Score=49.07 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=24.4
Q ss_pred cccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 189 YAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 189 igkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
-.++..++|.|++|+|||||+..|....
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678899999999999999998887654
No 199
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.40 E-value=0.054 Score=44.46 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.4
Q ss_pred cCceeeeecCCCccHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+|-.+.|.|++|+||||++..++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 6788999999999999999988763
No 200
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.39 E-value=0.038 Score=44.82 Aligned_cols=21 Identities=38% Similarity=0.725 Sum_probs=19.3
Q ss_pred eeeeecCCCccHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~ 214 (266)
|+.|+|++|+|||+|+..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999998875
No 201
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.37 E-value=0.056 Score=42.17 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.9
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.+|+|||+|+..+..+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999988764
No 202
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.35 E-value=0.05 Score=43.22 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=22.9
Q ss_pred ccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
....-+.|.|++|+|||+|+..+++..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 346678899999999999999998764
No 203
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.35 E-value=0.028 Score=55.29 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=26.6
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=+.+-+|++++|.|++|+|||||+..+..
T Consensus 362 isl~i~~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 362 VNFSVKPGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp EEEEECTTCEEEEECSSSSSHHHHHHTTTT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 347899999999999999999999987765
No 204
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.35 E-value=0.055 Score=43.90 Aligned_cols=24 Identities=33% Similarity=0.257 Sum_probs=21.3
Q ss_pred CceeeeecCCCccHHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+..+.|.|++|+||||++..++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 557899999999999999998874
No 205
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.34 E-value=0.053 Score=42.05 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.8
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.+|+|||+|+..+..+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999988754
No 206
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.30 E-value=0.053 Score=44.25 Aligned_cols=23 Identities=35% Similarity=0.716 Sum_probs=20.4
Q ss_pred eeeeecCCCccHHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
.+.|.|++|+||||++..++...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58899999999999999988753
No 207
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.27 E-value=0.055 Score=42.16 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.9
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.+|+|||+|+..+..+
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999988764
No 208
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.27 E-value=0.049 Score=45.17 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=18.6
Q ss_pred eeeeecCCCccHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~ 214 (266)
.++|.|++|+||||++..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999988754
No 209
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.21 E-value=0.057 Score=41.80 Aligned_cols=22 Identities=32% Similarity=0.733 Sum_probs=20.0
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.+|+|||+|+..+..+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999988764
No 210
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.17 E-value=0.044 Score=51.37 Aligned_cols=29 Identities=24% Similarity=0.126 Sum_probs=26.1
Q ss_pred cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+.+.+|+.++|.|++|+|||||+..++..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 57889999999999999999999988763
No 211
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.17 E-value=0.061 Score=43.45 Aligned_cols=25 Identities=24% Similarity=0.411 Sum_probs=21.1
Q ss_pred cCceeeeecCCCccHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
++-.+.|.|++|+||||++..++..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3557899999999999999988764
No 212
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.14 E-value=0.059 Score=43.15 Aligned_cols=23 Identities=35% Similarity=0.330 Sum_probs=20.9
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|-++|.|++|+||||+...++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999988764
No 213
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.14 E-value=0.054 Score=43.45 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=20.0
Q ss_pred ceeeeecCCCccHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~ 214 (266)
-|+.++|.+|+|||+|+..+..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999998875
No 214
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.08 E-value=0.066 Score=43.02 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=20.9
Q ss_pred CceeeeecCCCccHHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.-+.|.|.+|+||||++..++..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 456889999999999999988764
No 215
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.06 E-value=0.057 Score=42.47 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=19.7
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..+..+
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 7899999999999999988753
No 216
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.04 E-value=0.058 Score=41.61 Aligned_cols=22 Identities=45% Similarity=0.813 Sum_probs=19.8
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.+|+|||+|+..+..+
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999988754
No 217
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.01 E-value=0.066 Score=43.52 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=22.9
Q ss_pred ccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.++-.+.|.|++|+||||++..++..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 46778999999999999999988764
No 218
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.01 E-value=0.051 Score=42.71 Aligned_cols=19 Identities=32% Similarity=0.315 Sum_probs=17.4
Q ss_pred eeeeecCCCccHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMEL 212 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~i 212 (266)
-+.|.|++|+||||++..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999988
No 219
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.98 E-value=0.065 Score=41.51 Aligned_cols=22 Identities=32% Similarity=0.709 Sum_probs=19.9
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.+|+|||+|+..+..+
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999988764
No 220
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.97 E-value=0.052 Score=48.24 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.5
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+++|+|++|+|||||+..|+..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988764
No 221
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.96 E-value=0.037 Score=46.07 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.5
Q ss_pred ceeeeecCCCccHHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
+.++|.|++|+|||||+..|++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999888765
No 222
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.93 E-value=0.053 Score=53.09 Aligned_cols=29 Identities=31% Similarity=0.503 Sum_probs=24.9
Q ss_pred ccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 186 LAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|-..-+|+.++|+|++|+|||||+..|+.
T Consensus 19 l~~~~~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 19 LPTPKNNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp CCCCCTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCCCCCCEEEEECCCCCcHHHHHHHHhc
Confidence 44566999999999999999999987654
No 223
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.92 E-value=0.064 Score=45.38 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=21.6
Q ss_pred ccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
-++..+.|.|++|+||||++..++..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999988763
No 224
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=92.91 E-value=0.038 Score=55.01 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.8
Q ss_pred cccccccCceeeeecCCCccHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLI 209 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~ 209 (266)
.=+.+-+|+.++|+|++|+|||||+
T Consensus 37 vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 37 IDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEEEETTSEEEEECSTTSSHHHHH
T ss_pred cEEEECCCCEEEEECCCCCCHHHHh
Confidence 3478899999999999999999997
No 225
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.89 E-value=0.068 Score=41.57 Aligned_cols=22 Identities=32% Similarity=0.732 Sum_probs=19.9
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.+|+|||+|+..+..+
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999988764
No 226
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.87 E-value=0.068 Score=41.81 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=19.9
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.+|+|||+|+..+..+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999988764
No 227
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.83 E-value=0.028 Score=60.52 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=28.0
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+||+++|.|++|+|||||+..|.+-
T Consensus 1097 ~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1097 GLSFSVEPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEEECTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred ceeEEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 34478999999999999999999999988774
No 228
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.83 E-value=0.07 Score=41.52 Aligned_cols=22 Identities=36% Similarity=0.758 Sum_probs=19.9
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.+|+|||+|+..+..+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999988764
No 229
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.79 E-value=0.053 Score=43.95 Aligned_cols=29 Identities=24% Similarity=0.520 Sum_probs=23.1
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.-+.+.+| -.+|+|++|+|||||+..|..
T Consensus 20 ~~~~~~~g-~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 20 VVIPFSKG-FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEECCSS-EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 34556677 889999999999999976643
No 230
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.73 E-value=0.071 Score=44.10 Aligned_cols=23 Identities=26% Similarity=0.422 Sum_probs=20.4
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
-.+.|.|++|+|||||+..++..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988764
No 231
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.73 E-value=0.079 Score=42.94 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=22.5
Q ss_pred ccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.++..+.|.|.+|+||||++..++..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35677899999999999999988764
No 232
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.72 E-value=0.093 Score=43.25 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=21.1
Q ss_pred cCceeeeecCCCccHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+...+.|.|++|+||||++..++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4457899999999999999988763
No 233
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.71 E-value=0.075 Score=41.36 Aligned_cols=22 Identities=32% Similarity=0.703 Sum_probs=19.9
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.+|+|||+|+..+..+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999988763
No 234
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.70 E-value=0.076 Score=47.36 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=19.6
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
-+.|.|++|+|||+|+..+++.
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5899999999999999988764
No 235
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.70 E-value=0.068 Score=43.57 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=22.2
Q ss_pred cCceeeeecCCCccHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
++..+.|.|++|+||||++..++..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999988774
No 236
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.67 E-value=0.083 Score=44.38 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.2
Q ss_pred cCceeeeecCCCccHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+|-++.|.|++|+||||++..++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999988774
No 237
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.66 E-value=0.075 Score=41.96 Aligned_cols=22 Identities=41% Similarity=0.764 Sum_probs=19.9
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.+|+|||+|+..+..+
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999988764
No 238
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.65 E-value=0.071 Score=41.76 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=18.5
Q ss_pred eeeeecCCCccHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELI 213 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii 213 (266)
|+.|+|.+|+|||+|+..+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999998885
No 239
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.64 E-value=0.07 Score=41.62 Aligned_cols=22 Identities=41% Similarity=0.816 Sum_probs=19.6
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.+|+|||+|+..+..+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 7899999999999999988753
No 240
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.58 E-value=0.072 Score=43.20 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.5
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.++.|.|++|+||||++..++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988774
No 241
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.58 E-value=0.079 Score=41.34 Aligned_cols=22 Identities=32% Similarity=0.770 Sum_probs=20.0
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.+|+|||+|+..+..+
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999988764
No 242
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.56 E-value=0.072 Score=42.53 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=18.9
Q ss_pred eeeeecCCCccHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~ 214 (266)
.+.|.|++|+||||++..++.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 478999999999999998876
No 243
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.55 E-value=0.081 Score=45.16 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.1
Q ss_pred ccCceeeeecCCCccHHHHHHHHHH
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.+|.+++|.|++|+||||++..++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999988775
No 244
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.54 E-value=0.079 Score=41.82 Aligned_cols=22 Identities=41% Similarity=0.718 Sum_probs=19.8
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.+|+|||+|+..+..+
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999988753
No 245
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.53 E-value=0.075 Score=41.42 Aligned_cols=23 Identities=30% Similarity=0.806 Sum_probs=20.3
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
-|+.++|.+|+|||+|+..+..+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 37899999999999999988753
No 246
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.50 E-value=0.079 Score=42.76 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.4
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
=++.|+|.+|+|||+|+..+..+
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999988753
No 247
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.50 E-value=0.08 Score=42.15 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.9
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..+..+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999988763
No 248
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.46 E-value=0.23 Score=44.88 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=21.7
Q ss_pred cCceeee--ecCCCccHHHHHHHHHHHH
Q psy17544 191 KGGKIGL--FGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 191 kGQr~gI--fgg~G~GKT~L~~~ii~~~ 216 (266)
.++-+.| .|++|+|||+|+..+++..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 4566777 8999999999999888754
No 249
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.45 E-value=0.3 Score=43.71 Aligned_cols=41 Identities=20% Similarity=0.158 Sum_probs=30.1
Q ss_pred cCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCC
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGER 232 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER 232 (266)
+|+.++|.|.+|+||||++..++...+.. +.-+.+....-+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~~~d~~ 137 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQ 137 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEecCCcc
Confidence 89999999999999999999998866433 333333333433
No 250
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.42 E-value=0.095 Score=45.47 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=21.9
Q ss_pred ccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
..+.-+.|.|++|+|||+|+..+++.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34556999999999999999988764
No 251
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.42 E-value=0.092 Score=45.41 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=21.9
Q ss_pred cCceeeeecCCCccHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
++-++.|+|++|+||||++..++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4558999999999999999988764
No 252
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.40 E-value=0.09 Score=43.42 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=22.1
Q ss_pred ccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.++..+.|.|++|+||||++..++..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999988764
No 253
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.40 E-value=0.078 Score=41.82 Aligned_cols=23 Identities=39% Similarity=0.775 Sum_probs=20.4
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
=|+.|+|.+|+|||+|+..+..+
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37899999999999999988764
No 254
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.37 E-value=0.083 Score=43.01 Aligned_cols=22 Identities=27% Similarity=0.641 Sum_probs=19.9
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..++.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999888764
No 255
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.35 E-value=0.068 Score=43.03 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=17.4
Q ss_pred cCceeeeecCCCccHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
++..+.|.|.+|+||||++..++..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 6678999999999999999988763
No 256
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.34 E-value=0.088 Score=41.19 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=21.3
Q ss_pred cCceeeeecCCCccHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+--|+.++|.+|+|||+|+..+..+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4458999999999999999988753
No 257
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.33 E-value=0.12 Score=48.90 Aligned_cols=26 Identities=35% Similarity=0.558 Sum_probs=22.2
Q ss_pred CceeeeecCCCccHHHHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINNVA 217 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~~a 217 (266)
+.-+.|.|++|+|||+|+..+++...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 56789999999999999998887543
No 258
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=92.32 E-value=0.051 Score=54.10 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=25.0
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELI 213 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii 213 (266)
.=+.+.+|+.++|.|++|+|||||+..+.
T Consensus 341 vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 341 VSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 33678999999999999999999996543
No 259
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.32 E-value=0.072 Score=41.62 Aligned_cols=20 Identities=40% Similarity=0.551 Sum_probs=18.4
Q ss_pred eeeeecCCCccHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELI 213 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii 213 (266)
|+.++|.+|+|||+|+..+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 78999999999999998875
No 260
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.31 E-value=0.072 Score=42.32 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=19.9
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.+|+|||+|+..+..+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999888764
No 261
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.29 E-value=0.088 Score=41.91 Aligned_cols=22 Identities=45% Similarity=0.801 Sum_probs=19.9
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.+|+|||+|+..+..+
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999988764
No 262
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.28 E-value=0.085 Score=42.48 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.4
Q ss_pred eeeeecCCCccHHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
.+.|.|++|+||||++..++...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998754
No 263
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.28 E-value=0.043 Score=57.59 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=26.6
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|++++|.|++|+|||||+..|+-
T Consensus 691 dVSl~I~~GeivaIiGpNGSGKSTLLklLaG 721 (986)
T 2iw3_A 691 DINFQCSLSSRIAVIGPNGAGKSTLINVLTG 721 (986)
T ss_dssp EEEEEEETTCEEEECSCCCHHHHHHHHHHTT
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3446788999999999999999999987754
No 264
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.26 E-value=0.089 Score=46.83 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=22.3
Q ss_pred ccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
..+.-+.|+|++|+|||+|+..+++.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 45677999999999999999988764
No 265
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.24 E-value=0.09 Score=42.00 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=20.5
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
=|+.|+|.+|+|||+|+..+..+
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999988764
No 266
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.22 E-value=0.087 Score=42.53 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=20.0
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
++.|.|++|+||||++..++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6889999999999999988874
No 267
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.20 E-value=0.031 Score=54.42 Aligned_cols=29 Identities=14% Similarity=0.082 Sum_probs=25.0
Q ss_pred cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+.+-+|+.++|.|++|+|||||+..++..
T Consensus 255 ~~v~~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 255 LAIEHKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp HHHHTTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 44568999999999999999999988764
No 268
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=92.19 E-value=0.094 Score=49.43 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=25.8
Q ss_pred ccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 186 LAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|-.+.+|.+++|+|.+|+|||||+..|..
T Consensus 14 lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 14 WGRPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CSSSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 34577899999999999999999998876
No 269
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.18 E-value=0.094 Score=41.24 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=19.9
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.+|+|||+|+..+..+
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999988764
No 270
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.16 E-value=0.055 Score=53.25 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=25.8
Q ss_pred ccccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 188 PYAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 188 pigkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
.+-+|+.+.|.|.+|+|||||+..|+...
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhh
Confidence 46799999999999999999999888754
No 271
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.14 E-value=0.073 Score=42.06 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.7
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..+..+
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 7899999999999999988753
No 272
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.10 E-value=0.095 Score=42.14 Aligned_cols=22 Identities=45% Similarity=0.813 Sum_probs=20.0
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.+|+|||+|+..+..+
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999988764
No 273
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.09 E-value=0.089 Score=42.96 Aligned_cols=24 Identities=42% Similarity=0.527 Sum_probs=20.4
Q ss_pred cCceeeeecCCCccHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
+.-|+.++|.+|+|||+|+..+..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 445999999999999999998876
No 274
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.09 E-value=0.098 Score=44.06 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=22.5
Q ss_pred cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
+|-++.|.|++|+||||++..++...
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999887743
No 275
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.07 E-value=0.082 Score=42.25 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=19.7
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.+|+|||+|+..+..+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999988764
No 276
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.07 E-value=0.1 Score=42.64 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.5
Q ss_pred eeeeecCCCccHHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
-+.|.|++|+|||+|+..+++..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999988754
No 277
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.06 E-value=0.096 Score=42.78 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=20.2
Q ss_pred CceeeeecCCCccHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
...++|.|++|+||||++..++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999988865
No 278
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.06 E-value=0.099 Score=41.43 Aligned_cols=22 Identities=32% Similarity=0.709 Sum_probs=19.8
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.+|+|||+|+..+..+
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 7899999999999999988753
No 279
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.06 E-value=0.051 Score=51.62 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.4
Q ss_pred eeeeecCCCccHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~ 214 (266)
.++|+|++|+|||||+..|..
T Consensus 71 ~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 999999999999999987765
No 280
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.04 E-value=0.092 Score=41.31 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=19.8
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..+..+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999988753
No 281
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.03 E-value=0.096 Score=42.45 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=20.1
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..+..+
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 7889999999999999988865
No 282
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.00 E-value=0.1 Score=41.36 Aligned_cols=22 Identities=32% Similarity=0.771 Sum_probs=19.9
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.+|+|||+|+..+..+
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999988764
No 283
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.99 E-value=0.17 Score=44.97 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=22.5
Q ss_pred cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
.+.-+.|.|++|+|||+|+..+++..
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 45679999999999999999888754
No 284
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.96 E-value=0.1 Score=42.19 Aligned_cols=22 Identities=45% Similarity=0.702 Sum_probs=19.8
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..+..+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999988764
No 285
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.91 E-value=0.088 Score=51.05 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=25.7
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.=+.+-+ +.++|+|++|+|||||+..|+.-
T Consensus 22 ~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 22 ARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp EEEEECCS-SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEcc-ceEEEECCCCCcHHHHHHHHhcC
Confidence 33356778 99999999999999999877653
No 286
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.91 E-value=0.1 Score=41.40 Aligned_cols=22 Identities=27% Similarity=0.202 Sum_probs=19.8
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
++.|.|++|+||||++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988764
No 287
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.90 E-value=0.087 Score=42.15 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=20.0
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.+|+|||+|+..+..+
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999988764
No 288
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.89 E-value=0.08 Score=42.02 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=20.5
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
-|+.++|.+|+|||+|+..++.+
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37899999999999999988764
No 289
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.88 E-value=0.11 Score=43.36 Aligned_cols=28 Identities=32% Similarity=0.390 Sum_probs=24.4
Q ss_pred cccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 189 YAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 189 igkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
+.+|..+.|.|.+|+||||++..+....
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999988754
No 290
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.87 E-value=0.075 Score=46.09 Aligned_cols=28 Identities=25% Similarity=0.134 Sum_probs=24.6
Q ss_pred ccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 188 PYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 188 pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+..++..+.|.|++|+||||++..++..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 5667889999999999999999988764
No 291
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.85 E-value=0.1 Score=41.26 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.2
Q ss_pred cCceeeeecCCCccHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
+.-++.++|.+|+|||+|+..+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999998865
No 292
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.84 E-value=0.11 Score=41.21 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.2
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
=|+.|+|.+|+|||+|+..+..+
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999888753
No 293
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.82 E-value=0.098 Score=42.12 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.0
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.+|+|||+|+..+..+
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999988764
No 294
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.82 E-value=0.11 Score=41.44 Aligned_cols=22 Identities=32% Similarity=0.687 Sum_probs=19.7
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..+..+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6789999999999999988754
No 295
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=91.81 E-value=0.093 Score=45.05 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=19.2
Q ss_pred eeeecCCCccHHHHHHHHHHH
Q psy17544 195 IGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 195 ~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+.|.|++|+|||+|+..+++.
T Consensus 48 vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 899999999999999988764
No 296
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.81 E-value=0.11 Score=41.09 Aligned_cols=22 Identities=41% Similarity=0.732 Sum_probs=19.9
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.+|+|||+|+..+..+
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 7899999999999999988764
No 297
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.80 E-value=0.11 Score=45.45 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=21.6
Q ss_pred cCceeeeecCCCccHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.+.-+.|.|++|+|||+|+..+++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3567899999999999999988764
No 298
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=91.77 E-value=0.066 Score=57.45 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=27.3
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|++++|.|++|+|||||+..|.+
T Consensus 1051 ~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g 1081 (1284)
T 3g5u_A 1051 GLSLEVKKGQTLALVGSSGCGKSTVVQLLER 1081 (1284)
T ss_dssp SCCEEECSSSEEEEECSSSTTHHHHHHHHTT
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3446789999999999999999999987776
No 299
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.75 E-value=0.2 Score=46.14 Aligned_cols=48 Identities=15% Similarity=0.286 Sum_probs=34.0
Q ss_pred cCceeeeecCCCccHHHHHHHHHHHHHhcCCc-EEEEEeecCCchHHHHHHHHh
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-YSVFAGVGERTREGNDLYHEM 243 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~-v~V~alIGER~rEv~ef~~~l 243 (266)
.+.-+.|+|++|+|||+++..++.... ..+. ++|+ ...+|...+.+.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-~~~~~~~~~----D~~~~~~~~~~~~ 82 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-MQGSRVIII----DPEREYKEMCRKL 82 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEE----ESSCCSHHHHHHT
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-HCCCEEEEE----eCCcCHHHHHHHc
Confidence 566788999999999999999887543 3333 3333 3456777776665
No 300
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.75 E-value=0.098 Score=41.22 Aligned_cols=21 Identities=33% Similarity=0.744 Sum_probs=19.1
Q ss_pred eeeeecCCCccHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~ 214 (266)
|+.|+|.+|+|||+|+..+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999988764
No 301
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.73 E-value=0.21 Score=44.77 Aligned_cols=27 Identities=22% Similarity=0.226 Sum_probs=22.7
Q ss_pred ccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
..+.-+.|.|++|+|||+|+..+++..
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 345679999999999999999888754
No 302
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.72 E-value=0.1 Score=41.58 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=20.0
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..+..+
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999988764
No 303
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.69 E-value=0.11 Score=41.71 Aligned_cols=22 Identities=36% Similarity=0.777 Sum_probs=19.9
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..+..+
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999988764
No 304
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.66 E-value=0.11 Score=42.05 Aligned_cols=22 Identities=32% Similarity=0.709 Sum_probs=19.8
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..+..+
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999988754
No 305
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.64 E-value=0.11 Score=42.13 Aligned_cols=22 Identities=23% Similarity=0.671 Sum_probs=20.0
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..++.+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 7899999999999999988764
No 306
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.64 E-value=0.087 Score=41.92 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=19.9
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..+..+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999988753
No 307
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=91.61 E-value=0.21 Score=43.85 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=21.2
Q ss_pred ceeeeecCCCccHHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
+-+.|.|++|+|||+|+.++++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999998753
No 308
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.61 E-value=0.12 Score=45.25 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=20.3
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
-.+.|.|++|+||||++..++..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988764
No 309
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.61 E-value=0.098 Score=52.00 Aligned_cols=30 Identities=30% Similarity=0.459 Sum_probs=24.3
Q ss_pred cccccccC-----ceeeeecCCCccHHHHHHHHHH
Q psy17544 185 LLAPYAKG-----GKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 185 ~L~pigkG-----Qr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.-+.+-+| +.++|+|++|+|||||+..|+.
T Consensus 366 vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~G 400 (608)
T 3j16_B 366 FVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAG 400 (608)
T ss_dssp CEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHT
T ss_pred eEEEEecCccccceEEEEECCCCCcHHHHHHHHhc
Confidence 34555555 8899999999999999987764
No 310
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.57 E-value=0.11 Score=43.58 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=21.8
Q ss_pred cCceeeeecCCCccHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
++..+.|.|++|+||||++..++..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999988764
No 311
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.56 E-value=0.13 Score=43.94 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.0
Q ss_pred eeeeecCCCccHHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
++-|+|++|+||+|++..|+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47799999999999999888754
No 312
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.56 E-value=0.1 Score=42.11 Aligned_cols=24 Identities=42% Similarity=0.533 Sum_probs=20.9
Q ss_pred CceeeeecCCCccHHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
--|+.++|.+|+|||+|+..+..+
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999988754
No 313
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.55 E-value=0.23 Score=44.68 Aligned_cols=27 Identities=22% Similarity=0.555 Sum_probs=23.3
Q ss_pred cCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINNVA 217 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~~a 217 (266)
.++-+.|.|++|+|||+|+..+++...
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 368899999999999999998887643
No 314
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.54 E-value=0.11 Score=41.40 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.2
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
..+.|.|++|+||||++..++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999988764
No 315
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.52 E-value=0.11 Score=43.57 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.8
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
++.|.|++|+||||++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999988774
No 316
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.51 E-value=0.12 Score=42.05 Aligned_cols=22 Identities=41% Similarity=0.749 Sum_probs=19.9
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..+..+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999988764
No 317
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.48 E-value=0.44 Score=42.81 Aligned_cols=47 Identities=23% Similarity=0.073 Sum_probs=31.8
Q ss_pred ccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHH
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGN 237 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ 237 (266)
.+|..+++.|.+|+||||++..++...+. .+.-+.+....-+.....
T Consensus 96 ~~~~vi~i~G~~G~GKTT~~~~la~~~~~-~g~~v~l~~~D~~r~~a~ 142 (297)
T 1j8m_F 96 KIPYVIMLVGVQGTGKTTTAGKLAYFYKK-KGFKVGLVGADVYRPAAL 142 (297)
T ss_dssp SSSEEEEEECSSCSSTTHHHHHHHHHHHH-TTCCEEEEECCCSSSHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEecCCCCHHHH
Confidence 35899999999999999999999886543 333333444443333333
No 318
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.48 E-value=0.12 Score=43.75 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=18.1
Q ss_pred eeeecCCCccHHHHHHHHHHH
Q psy17544 195 IGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 195 ~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+-|.||||+|||||+..+...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999988764
No 319
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.47 E-value=0.12 Score=41.62 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=20.0
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..+..+
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999988764
No 320
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.42 E-value=0.097 Score=46.59 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=18.5
Q ss_pred eeeecCCCccHHHHHHHHHHH
Q psy17544 195 IGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 195 ~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+.++|++|+|||+|+..+++.
T Consensus 39 lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567799999999999988875
No 321
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.42 E-value=0.1 Score=47.85 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=19.2
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
-+||.|++|+|||||+..|..-
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999877653
No 322
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.41 E-value=0.12 Score=41.59 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=19.7
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..+..+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999988754
No 323
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.40 E-value=0.15 Score=43.46 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=22.3
Q ss_pred cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
++.++.|.|++|+||||++..|+...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999888753
No 324
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.40 E-value=0.12 Score=42.61 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.5
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
-++.|+|++|+|||+|+..+..+
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999988764
No 325
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.37 E-value=0.18 Score=47.92 Aligned_cols=46 Identities=26% Similarity=0.431 Sum_probs=31.8
Q ss_pred eeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEe---------ecCCchHHHHHHHHhHh
Q psy17544 195 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG---------VGERTREGNDLYHEMIE 245 (266)
Q Consensus 195 ~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~al---------IGER~rEv~ef~~~l~~ 245 (266)
++++||+|+|||.|+..+++. +.. .+|.. +||..+-++++.+.-.+
T Consensus 185 vLL~GPPGTGKTllAkAiA~e-~~~----~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~ 239 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHH-TDC----KFIRVSGAELVQKYIGEGSRMVRELFVMARE 239 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHH-HTC----EEEEEEGGGGSCSSTTHHHHHHHHHHHHHHH
T ss_pred eEEeCCCCCCHHHHHHHHHHh-hCC----CceEEEhHHhhccccchHHHHHHHHHHHHHH
Confidence 789999999999999988874 333 22222 46666666766655443
No 326
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.37 E-value=0.13 Score=45.06 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=21.2
Q ss_pred ceeeeecCCCccHHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
-|+||+|++|+||||++..|+...
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 389999999999999999887754
No 327
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.36 E-value=0.13 Score=42.11 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=19.4
Q ss_pred eeeeecCCCccHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~ 214 (266)
|+.|+|.+|+|||+|+..++.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999998874
No 328
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.34 E-value=0.11 Score=44.11 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=20.4
Q ss_pred CceeeeecCCCccHHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
..-+.|.|++|+|||+|+..+++.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345889999999999999988774
No 329
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.30 E-value=0.2 Score=47.85 Aligned_cols=47 Identities=30% Similarity=0.459 Sum_probs=30.7
Q ss_pred eeeecCCCccHHHHHHHHHHHHHhcCCcEEEEE-------eecCCchHHHHHHHHhH
Q psy17544 195 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-------GVGERTREGNDLYHEMI 244 (266)
Q Consensus 195 ~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~a-------lIGER~rEv~ef~~~l~ 244 (266)
++++||+|||||.|+..+++. ...+ .+.+- .+||..+.++++.+.-.
T Consensus 209 iLL~GPPGtGKT~lakAiA~~-~~~~--~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~ 262 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANS-TKAA--FIRVNGSEFVHKYLGEGPRMVRDVFRLAR 262 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHH-HTCE--EEEEEGGGTCCSSCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH-hCCC--eEEEecchhhccccchhHHHHHHHHHHHH
Confidence 889999999999999988875 3332 22221 13555556666655444
No 330
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.26 E-value=0.27 Score=41.03 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=20.5
Q ss_pred eeeeecCCCccHHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
.++|.|.+|+|||||+..++...
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 57899999999999999998864
No 331
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.24 E-value=0.16 Score=40.81 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=20.7
Q ss_pred CceeeeecCCCccHHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
...+.|.|++|+||||++..++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988764
No 332
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.24 E-value=0.13 Score=41.55 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.9
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..+..+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7889999999999999988764
No 333
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.23 E-value=0.25 Score=47.05 Aligned_cols=49 Identities=22% Similarity=0.248 Sum_probs=33.5
Q ss_pred ceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMI 244 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~ 244 (266)
.-+.|.|++|+|||+|+..+++. ... ...-+-..+....++.+.++...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~-~~~--~f~~l~a~~~~~~~ir~~~~~a~ 99 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY-ANA--DVERISAVTSGVKEIREAIERAR 99 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH-TTC--EEEEEETTTCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-hCC--CeEEEEeccCCHHHHHHHHHHHH
Confidence 45899999999999999988764 322 24444455555566666665544
No 334
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=91.23 E-value=0.27 Score=42.71 Aligned_cols=28 Identities=18% Similarity=0.110 Sum_probs=23.1
Q ss_pred ccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELINNVA 217 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~~~a 217 (266)
.+|+-+.|.|++|+||||++.+++++..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~ 37 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLE 37 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4677778888889999999999998754
No 335
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.21 E-value=0.13 Score=41.76 Aligned_cols=36 Identities=28% Similarity=0.503 Sum_probs=21.4
Q ss_pred cceEeecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 179 GIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 179 GIraID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|-..++.+.+ -+-=|+.|+|.+|+|||+|+..+..+
T Consensus 16 ~~~~~~~~~~-~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 16 ENLYFQSMAK-SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp ------------CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cccchhccCC-CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 3333444432 23458999999999999999988764
No 336
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.21 E-value=0.2 Score=47.95 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.5
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
-++++||+|||||.|+..+++.
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eeEEECcCCCCHHHHHHHHHHH
Confidence 3789999999999999988874
No 337
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.21 E-value=0.13 Score=44.46 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.2
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
-.++|.|++|+||||++..++..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999988773
No 338
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.20 E-value=0.14 Score=41.55 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=20.1
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.+|+|||+|+..+..+
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7999999999999999988764
No 339
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.19 E-value=0.14 Score=41.52 Aligned_cols=22 Identities=32% Similarity=0.699 Sum_probs=19.8
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..+..+
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999988753
No 340
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=91.19 E-value=0.084 Score=56.66 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=27.1
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.=+.+-+|++++|.|++|+|||||+..|.+
T Consensus 408 ~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g 438 (1284)
T 3g5u_A 408 GLNLKVKSGQTVALVGNSGCGKSTTVQLMQR 438 (1284)
T ss_dssp EEEEEECTTCEEEEECCSSSSHHHHHHHTTT
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3447899999999999999999999987765
No 341
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.19 E-value=0.13 Score=42.27 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.4
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
-|+.|+|.+|+|||+|+..+..+
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999988764
No 342
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.18 E-value=0.15 Score=44.58 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=21.9
Q ss_pred cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
.+.-+.|.|++|+|||+|+..+++..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34569999999999999999887754
No 343
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.17 E-value=0.12 Score=41.89 Aligned_cols=22 Identities=32% Similarity=0.777 Sum_probs=19.9
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..+..+
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999988764
No 344
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.14 E-value=0.14 Score=41.02 Aligned_cols=22 Identities=36% Similarity=0.751 Sum_probs=20.0
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..+..+
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999988764
No 345
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=91.12 E-value=0.11 Score=44.74 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=19.2
Q ss_pred eeeecCCCccHHHHHHHHHHH
Q psy17544 195 IGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 195 ~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+.|.|++|+|||+|+..+++.
T Consensus 47 vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 889999999999999988774
No 346
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.07 E-value=0.14 Score=40.38 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=20.5
Q ss_pred cCceeeeecCCCccHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.+.-+.|.|++|+|||+|+..+.+
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Confidence 455689999999999999987765
No 347
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.07 E-value=0.13 Score=44.84 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=19.1
Q ss_pred eeeecCCCccHHHHHHHHHHH
Q psy17544 195 IGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 195 ~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+.|.|++|+|||||+..++..
T Consensus 4 i~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHhc
Confidence 679999999999999999875
No 348
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.07 E-value=0.13 Score=42.70 Aligned_cols=24 Identities=42% Similarity=0.695 Sum_probs=21.6
Q ss_pred ceeeeecCCCccHHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
-++.|.|.+|+|||||+..++.+.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999864
No 349
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.06 E-value=0.13 Score=43.80 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=19.2
Q ss_pred eeeeecCCCccHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~ 214 (266)
|++|+|.+|+|||+|+..+..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 789999999999999988775
No 350
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.00 E-value=0.14 Score=41.74 Aligned_cols=22 Identities=50% Similarity=0.696 Sum_probs=19.7
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..+..+
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 7899999999999999988753
No 351
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.93 E-value=0.14 Score=41.33 Aligned_cols=23 Identities=30% Similarity=0.751 Sum_probs=20.5
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
-|+.|+|.+|+|||+|+..+..+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 48999999999999999988763
No 352
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.92 E-value=0.14 Score=41.97 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.0
Q ss_pred CceeeeecCCCccHHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
-=|+.|+|.+|+|||+|+..+..+
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 348999999999999999988764
No 353
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.91 E-value=0.12 Score=41.72 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.2
Q ss_pred CceeeeecCCCccHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.=|+.|+|.+|+|||+|+..+..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 34899999999999999988764
No 354
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=90.90 E-value=0.54 Score=44.86 Aligned_cols=40 Identities=25% Similarity=0.084 Sum_probs=29.2
Q ss_pred ccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeec
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVG 230 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIG 230 (266)
.++..+.+.|++|+||||++..++...+. ++.-+.++.+.
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~-~G~kVllv~~D 134 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKK-RGYKVGLVAAD 134 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHH-TTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEecC
Confidence 46888999999999999999999986643 33333333333
No 355
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=90.86 E-value=0.11 Score=46.72 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=18.2
Q ss_pred eeeeecCCCccHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~ 214 (266)
+++|+|++|+|||||+..|..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 459999999999999988653
No 356
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.85 E-value=0.14 Score=41.64 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=19.7
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..+..+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999888753
No 357
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.83 E-value=0.16 Score=42.83 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.1
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
-.++|.|++|+||||+...++..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999988764
No 358
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.81 E-value=0.29 Score=40.70 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.0
Q ss_pred ceeeeecCCCccHHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
..++|.|++|+|||||+..++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 467899999999999999998764
No 359
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=90.81 E-value=0.55 Score=42.92 Aligned_cols=28 Identities=7% Similarity=0.126 Sum_probs=24.9
Q ss_pred cccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 189 YAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 189 igkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
-+++..+.|.|++|+|||+++..+++..
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4688899999999999999999988765
No 360
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.80 E-value=0.56 Score=40.04 Aligned_cols=55 Identities=18% Similarity=0.126 Sum_probs=34.5
Q ss_pred cCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcC
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESG 247 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~g 247 (266)
+|--+-|-|+.|+||||++..+...... . ++.|+..-=.++.+..+.++++...+
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~-~-~~~v~~~~~p~~~~~g~~i~~~l~~~ 59 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRE-R-GIEVQLTREPGGTPLAERIRELLLAP 59 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHT-T-TCCEEEEESSCSSHHHHHHHHHHHSC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHH-c-CCCcccccCCCCCHHHHHHHHHHhcC
Confidence 6778899999999999999998876532 2 23333222222344555555554433
No 361
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.76 E-value=0.14 Score=41.29 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=18.9
Q ss_pred eeeeecCCCccHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~ 214 (266)
|+.|+|.+|+|||+|+..+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 688999999999999988764
No 362
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=90.75 E-value=0.12 Score=41.43 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.7
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.+|+|||+|+..+..+
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999988753
No 363
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.74 E-value=0.43 Score=41.40 Aligned_cols=58 Identities=19% Similarity=0.202 Sum_probs=33.1
Q ss_pred ccCceeeeecCCCccHHHHHHHHHHHHHhcC--CcEEEEEeecCCchHHHHHHHHhHhcC
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELINNVAKAH--GGYSVFAGVGERTREGNDLYHEMIESG 247 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~--~~v~V~alIGER~rEv~ef~~~l~~~g 247 (266)
.+|--+-|-|++|+||||++..+.......+ .++.|+..--.++.+..+.++++...+
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~ 82 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQ 82 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHHS
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHcC
Confidence 4788899999999999999998887653320 013333332233445555555554443
No 364
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.68 E-value=0.16 Score=41.58 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=19.8
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.++|.|++|+||||++..++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999988764
No 365
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.68 E-value=0.17 Score=42.24 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=19.8
Q ss_pred CceeeeecCCCccHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
+-.++|.|++|+||||++..++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999988754
No 366
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.64 E-value=0.15 Score=42.43 Aligned_cols=22 Identities=50% Similarity=0.741 Sum_probs=19.9
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..+..+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 7899999999999999988764
No 367
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.60 E-value=0.35 Score=44.15 Aligned_cols=28 Identities=29% Similarity=0.461 Sum_probs=24.0
Q ss_pred ccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELINNVA 217 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~~~a 217 (266)
.+.-+++|.|.+|+|||||+..++...+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4556899999999999999999987654
No 368
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.58 E-value=0.15 Score=41.66 Aligned_cols=22 Identities=36% Similarity=0.767 Sum_probs=19.8
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..+..+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999988753
No 369
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.57 E-value=0.084 Score=43.62 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.3
Q ss_pred eeeeecCCCccHHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
.+.|.|++|+||||++..++...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998765
No 370
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.56 E-value=0.1 Score=41.54 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.2
Q ss_pred ccCceeeeecCCCccHHHHHHHHHH
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
-+.=|+.++|.+|+|||+|+..+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3556899999999999999988763
No 371
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.56 E-value=0.17 Score=40.39 Aligned_cols=20 Identities=30% Similarity=0.295 Sum_probs=17.2
Q ss_pred eeeeecCCCccHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELI 213 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii 213 (266)
|+.|+|.+|+|||+|+..+.
T Consensus 16 ki~vvG~~~~GKssL~~~l~ 35 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIY 35 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999995443
No 372
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=90.54 E-value=0.15 Score=49.55 Aligned_cols=25 Identities=40% Similarity=0.546 Sum_probs=23.1
Q ss_pred cCceeeeecCCCccHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+|.-++|+|++|+|||+|+..++..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999988774
No 373
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.53 E-value=0.13 Score=41.88 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=19.8
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
=|+.|+|.+|+|||+|+..+..+
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999988754
No 374
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.53 E-value=0.09 Score=41.92 Aligned_cols=22 Identities=36% Similarity=0.706 Sum_probs=9.5
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..+..+
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999888754
No 375
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.53 E-value=0.12 Score=42.53 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.2
Q ss_pred CceeeeecCCCccHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
--|+.++|.+|+|||+|+..+..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34899999999999999998864
No 376
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.52 E-value=0.13 Score=42.53 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=21.1
Q ss_pred cCceeeeecCCCccHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+-=|+.++|.+|+|||+|+..+..+
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 4458999999999999999888764
No 377
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.50 E-value=0.16 Score=41.07 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=20.1
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.+|+|||+|+..+..+
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999988864
No 378
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=90.50 E-value=0.16 Score=45.58 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=22.2
Q ss_pred CceeeeecCCCccHHHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
|.-+.|.|++|+|||+|+..+++..
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999888753
No 379
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.50 E-value=0.15 Score=40.76 Aligned_cols=25 Identities=16% Similarity=0.309 Sum_probs=21.0
Q ss_pred ccCceeeeecCCCccHHHHHHHHHH
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
-+.=|+.++|.+|+|||+|+..+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999998874
No 380
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.49 E-value=0.15 Score=41.04 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.9
Q ss_pred cCceeeeecCCCccHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
+-=|+.++|.+|+|||+|+..+..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999998874
No 381
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.45 E-value=0.17 Score=41.26 Aligned_cols=23 Identities=39% Similarity=0.730 Sum_probs=20.2
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
=|+.|+|.+|+|||+|+..+..+
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37899999999999999988753
No 382
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=90.44 E-value=0.13 Score=46.07 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=21.9
Q ss_pred cCceeeeecCCCccHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
++.+++|+|.+|+|||||+..+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 5668999999999999999988753
No 383
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=90.42 E-value=0.33 Score=47.93 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=36.0
Q ss_pred eeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhcC
Q psy17544 195 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESG 247 (266)
Q Consensus 195 ~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~g 247 (266)
..|.||+|+|||+.+.+++....+...-+ ..|.-...-+.++.+.|.+.+
T Consensus 208 ~lI~GPPGTGKT~ti~~~I~~l~~~~~~I---Lv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 208 AIIHGPPGTGKTTTVVEIILQAVKQGLKV---LCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCE---EEEESSHHHHHHHHHHHHHTT
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCeE---EEEcCchHHHHHHHHHHHhcC
Confidence 57999999999999999988655433122 345566777788888776554
No 384
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.36 E-value=0.14 Score=44.47 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=22.2
Q ss_pred cCceeeeecCCCccHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.|..+.|.|++|+|||+|+.+++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 5677999999999999999999864
No 385
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.32 E-value=0.17 Score=41.77 Aligned_cols=21 Identities=33% Similarity=0.621 Sum_probs=19.2
Q ss_pred eeeeecCCCccHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~ 214 (266)
|+.|+|.+|+|||+|+..+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 789999999999999988875
No 386
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.31 E-value=0.1 Score=56.25 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=27.1
Q ss_pred cccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 185 ~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.=+.+-+|++++|.|++|+|||||+.-|.+-
T Consensus 437 isl~i~~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 437 MNLRVNAGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp EEEEECTTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred eEEeecCCcEEEEEecCCCcHHHHHHHhccc
Confidence 3467889999999999999999999877664
No 387
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.31 E-value=0.16 Score=41.76 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=19.3
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..+..+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 7899999999999999988753
No 388
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.29 E-value=0.19 Score=44.84 Aligned_cols=28 Identities=25% Similarity=0.242 Sum_probs=23.4
Q ss_pred ccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 188 PYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 188 pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+-.+|.-+.|.|++|+|||||+..++..
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4456677899999999999999988763
No 389
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.27 E-value=0.17 Score=42.17 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.1
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..+..+
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999988764
No 390
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=90.26 E-value=0.13 Score=42.26 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=18.4
Q ss_pred eeeeecCCCccHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELI 213 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii 213 (266)
|+.|+|.+|+|||+|+..+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999998874
No 391
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=90.26 E-value=0.15 Score=43.63 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=20.1
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|++|||||+|+..++.+
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 7999999999999999988764
No 392
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.26 E-value=0.17 Score=41.72 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=19.9
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.+|+|||+|+..+..+
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 8999999999999999888753
No 393
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=90.24 E-value=0.17 Score=43.80 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=21.3
Q ss_pred cCceeeeecCCCccHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
....+.|.|++|+|||+|+..+++.
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3456889999999999999988874
No 394
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.22 E-value=0.15 Score=45.94 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=20.7
Q ss_pred CceeeeecCCCccHHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
..-+.|+|++|+|||+|+..+++.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 356899999999999999988874
No 395
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=90.19 E-value=0.18 Score=43.82 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=21.9
Q ss_pred cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
.+.-+.|.|++|+|||+|+..+++..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35578999999999999999888753
No 396
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=90.13 E-value=0.25 Score=43.19 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.0
Q ss_pred ceeeeecCCCccHHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
.-+.|.|++|+|||+|+..+++..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 468999999999999999888754
No 397
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=90.12 E-value=0.16 Score=45.51 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.1
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.-+.|+|++|+|||+|+..+++.
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999988764
No 398
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.09 E-value=0.29 Score=48.13 Aligned_cols=40 Identities=20% Similarity=0.205 Sum_probs=28.1
Q ss_pred cCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeec
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVG 230 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIG 230 (266)
..+-+.|.|++|+|||+++..++.........+.+.+-.|
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~ 242 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTG 242 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcH
Confidence 4678899999999999999998875433222244444444
No 399
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.99 E-value=0.3 Score=46.73 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=19.6
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
-++++||+|||||.|+..+++.
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3789999999999999988875
No 400
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.99 E-value=0.2 Score=42.40 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=19.6
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
++.|.|++|+||||++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999988764
No 401
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.97 E-value=0.43 Score=41.90 Aligned_cols=49 Identities=22% Similarity=0.265 Sum_probs=31.8
Q ss_pred eeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchH-HHHHHHHh
Q psy17544 194 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTRE-GNDLYHEM 243 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rE-v~ef~~~l 243 (266)
++-+.+.+|+||||++..++...+. .+--++++-+..-++. ...+++.+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~-~G~~V~v~d~D~q~~~~~~al~~gl 57 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR-QGVRVMAGVVETHGRAETEALLNGL 57 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCCTTCHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-CCCCEEEEEeCCCCChhHHHHhcCc
Confidence 4667889999999999999886543 3333555666654443 33444444
No 402
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=89.97 E-value=0.18 Score=41.04 Aligned_cols=22 Identities=32% Similarity=0.641 Sum_probs=19.3
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..+..+
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999988754
No 403
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=89.85 E-value=0.19 Score=41.16 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.7
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..+..+
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999888763
No 404
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=89.82 E-value=0.2 Score=41.71 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.0
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..+..+
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7889999999999999988764
No 405
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.80 E-value=0.32 Score=46.65 Aligned_cols=48 Identities=25% Similarity=0.420 Sum_probs=31.2
Q ss_pred eeeecCCCccHHHHHHHHHHHHHhcCCcEEEEE-------eecCCchHHHHHHHHhHh
Q psy17544 195 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-------GVGERTREGNDLYHEMIE 245 (266)
Q Consensus 195 ~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~a-------lIGER~rEv~ef~~~l~~ 245 (266)
++++||+|||||.|+..+++. +..+ .+.+- .+||..+-++++.+.-.+
T Consensus 219 vLLyGPPGTGKTlLAkAiA~e-~~~~--fi~v~~s~l~sk~vGesek~ir~lF~~Ar~ 273 (437)
T 4b4t_I 219 VILYGAPGTGKTLLAKAVANQ-TSAT--FLRIVGSELIQKYLGDGPRLCRQIFKVAGE 273 (437)
T ss_dssp EEEESSTTTTHHHHHHHHHHH-HTCE--EEEEESGGGCCSSSSHHHHHHHHHHHHHHH
T ss_pred CceECCCCchHHHHHHHHHHH-hCCC--EEEEEHHHhhhccCchHHHHHHHHHHHHHh
Confidence 889999999999999988875 3332 22221 245555566666554443
No 406
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=89.71 E-value=0.2 Score=41.15 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.4
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
=|+.|+|.+|+|||+|+..+..+
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999988764
No 407
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=89.70 E-value=0.17 Score=44.10 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=19.3
Q ss_pred eeeeecCCCccHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~ 214 (266)
+++|+|.+|+|||||+..+..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g 25 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTG 25 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 789999999999999998865
No 408
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=89.68 E-value=0.19 Score=48.81 Aligned_cols=26 Identities=38% Similarity=0.523 Sum_probs=21.6
Q ss_pred ccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 188 PYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 188 pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.+-+| ++|+|++|+|||+|+..++..
T Consensus 62 ~ip~G--vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 62 RIPKG--VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp CCCSE--EEEECSSSSSHHHHHHHHHHH
T ss_pred CCCce--EEEECCCCCCHHHHHHHHHHH
Confidence 34566 999999999999999887763
No 409
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.67 E-value=0.17 Score=45.10 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=22.5
Q ss_pred cccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 189 YAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 189 igkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
-+++..+.|.|++|+|||||+..+++.
T Consensus 33 ~~~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 33 PRDLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp TTCCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 355555999999999999999988774
No 410
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=89.60 E-value=0.15 Score=41.17 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.4
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
-|+.++|.+|+|||+|+..+..+
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCG
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999988764
No 411
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=89.57 E-value=0.2 Score=41.15 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=19.7
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..+..+
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 7899999999999999988753
No 412
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=89.51 E-value=0.18 Score=41.10 Aligned_cols=24 Identities=29% Similarity=0.337 Sum_probs=20.5
Q ss_pred cCceeeeecCCCccHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
+.=|+.|+|.+|+|||+|+..+..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 345899999999999999998753
No 413
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=89.42 E-value=0.32 Score=45.22 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=22.6
Q ss_pred CceeeeecCCCccHHHHHHHHHHHHHh
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINNVAK 218 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~~a~ 218 (266)
-+-+.|+|++|+|||+++..++.+..+
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~ 79 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLL 79 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 467889999999999999888876543
No 414
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=89.38 E-value=0.2 Score=41.63 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=19.9
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
=|+.|+|.+|+|||+|+..+..+
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 37999999999999999988754
No 415
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.36 E-value=0.23 Score=41.13 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=21.2
Q ss_pred ceeeeecCCCccHHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
-++.|.|.+|+|||||+..++.+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998763
No 416
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=89.34 E-value=0.25 Score=43.35 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=21.2
Q ss_pred CceeeeecCCCccHHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+-+.|.|++|+|||+|+.++++.
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH
Confidence 478899999999999999988763
No 417
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=89.32 E-value=0.42 Score=47.16 Aligned_cols=53 Identities=21% Similarity=0.270 Sum_probs=36.3
Q ss_pred CceeeeecCCCccHHHHHHHHHHHHHhcCCc-EEEEEeecCCchHHHHHHHHhHhcC
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINNVAKAHGG-YSVFAGVGERTREGNDLYHEMIESG 247 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~-v~V~alIGER~rEv~ef~~~l~~~g 247 (266)
..-..|.||+|+|||+++..++....+..+. +.| +.-...-+.++.+.+.+.|
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv---~a~tn~A~~~l~~~l~~~~ 248 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLV---CAPSNIAVDQLTEKIHQTG 248 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEE---EESSHHHHHHHHHHHHTTT
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE---EeCcHHHHHHHHHHHHhcC
Confidence 3457899999999999999998865432222 333 4445566777777776655
No 418
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=89.29 E-value=0.22 Score=42.23 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=18.8
Q ss_pred eeeeecCCCccHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELI 213 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii 213 (266)
|+.|+|.+|+|||+|+..++
T Consensus 39 kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999998876
No 419
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=89.25 E-value=0.15 Score=48.45 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=27.3
Q ss_pred eecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 183 ID~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
-|.-+.+-.|..++|+|.+|+|||||+..+..
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg 179 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTR 179 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCS
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHc
Confidence 35556778899999999999999999988765
No 420
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=89.21 E-value=0.19 Score=42.23 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.2
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
=|+.|+|.+|+|||+|+..+..+
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999988754
No 421
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=89.13 E-value=0.19 Score=44.80 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=21.7
Q ss_pred cCceeeeecCCCccHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.|.-+.|.|++|+|||+|+..+++.
T Consensus 45 ~~~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp HTCCEEEESCCCHHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3678999999999999999988763
No 422
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.13 E-value=0.35 Score=46.80 Aligned_cols=48 Identities=29% Similarity=0.380 Sum_probs=30.5
Q ss_pred eeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEE-------eecCCchHHHHHHHHhH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-------GVGERTREGNDLYHEMI 244 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~a-------lIGER~rEv~ef~~~l~ 244 (266)
-++++|++|+|||.|+..+++. +..+ ...+- .+||-.+-++++.+.-.
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e-~~~~--fi~vs~s~L~sk~vGesek~ir~lF~~Ar 299 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANR-TDAT--FIRVIGSELVQKYVGEGARMVRELFEMAR 299 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHH-HTCE--EEEEEGGGGCCCSSSHHHHHHHHHHHHHH
T ss_pred ceEeeCCCCCcHHHHHHHHHhc-cCCC--eEEEEhHHhhcccCCHHHHHHHHHHHHHH
Confidence 4889999999999999988874 3331 21111 24555555666555443
No 423
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=89.10 E-value=0.42 Score=46.10 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=33.6
Q ss_pred CceeeeecCCCccHHHHHHHHHH---HHHhcCCcEEEEEeecCCc-hHHHHHHHHh
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELIN---NVAKAHGGYSVFAGVGERT-REGNDLYHEM 243 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~---~~a~~~~~v~V~alIGER~-rEv~ef~~~l 243 (266)
..-++|.|..|+|||||+..+.+ .....+-+..+++-+.+.. -...++..++
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 35689999999999999998875 1122232467777666643 2344444443
No 424
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=89.07 E-value=0.25 Score=41.20 Aligned_cols=22 Identities=45% Similarity=0.721 Sum_probs=19.8
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.|+|.+|+|||+|+..+..+
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999988753
No 425
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=89.07 E-value=0.089 Score=48.46 Aligned_cols=33 Identities=21% Similarity=0.431 Sum_probs=26.4
Q ss_pred cceEe-ecccccccCceeeeecCCCccHHHHHHHH
Q psy17544 179 GIKVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMEL 212 (266)
Q Consensus 179 GIraI-D~L~pigkGQr~gIfgg~G~GKT~L~~~i 212 (266)
+++.+ |.=+.+.+| ..+|.|+.|+|||||+..|
T Consensus 47 nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI 80 (415)
T 4aby_A 47 NLATITQLELELGGG-FCAFTGETGAGKSIIVDAL 80 (415)
T ss_dssp EETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHH
T ss_pred cccceeeEEEecCCC-cEEEECCCCCCHHHHHHHH
Confidence 34444 344678899 9999999999999999765
No 426
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=88.98 E-value=0.22 Score=42.80 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.9
Q ss_pred ceeeeecCCCccHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~ 214 (266)
-+++|+|.+|+|||||+..+..
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999998875
No 427
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=88.96 E-value=0.26 Score=42.53 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=20.8
Q ss_pred cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
+.--+-|+|++|+||+|++..|+...
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 33346789999999999999888754
No 428
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=88.94 E-value=0.1 Score=42.31 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=5.0
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
=|+.|+|.+|+|||+|+..+..+
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 38999999999999999888765
No 429
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=88.86 E-value=0.78 Score=40.49 Aligned_cols=50 Identities=20% Similarity=0.211 Sum_probs=28.4
Q ss_pred eeeeecC-CCccHHHHHHHHHHHHHhcCCcEEEEEeecCCchHHHHHHHHhHhc
Q psy17544 194 KIGLFGG-AGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 246 (266)
Q Consensus 194 r~gIfgg-~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~rEv~ef~~~l~~~ 246 (266)
...+++| +|+|||+++..+++.. ..+ +.-+-....+..++.+.+.++.+.
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l-~~~--~~~i~~~~~~~~~i~~~~~~~~~~ 99 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDV-NAD--MMFVNGSDCKIDFVRGPLTNFASA 99 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHT-TEE--EEEEETTTCCHHHHHTHHHHHHHB
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHh-CCC--EEEEcccccCHHHHHHHHHHHHhh
Confidence 5556766 9999999999887642 221 222222223344445555554443
No 430
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=88.85 E-value=0.49 Score=45.01 Aligned_cols=28 Identities=25% Similarity=0.114 Sum_probs=25.0
Q ss_pred cCceeeeecCCCccHHHHHHHHHHHHHh
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINNVAK 218 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~~a~ 218 (266)
+|+.+.+.|.+|+||||++..++...+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 8899999999999999999999986543
No 431
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=88.84 E-value=0.27 Score=42.77 Aligned_cols=25 Identities=32% Similarity=0.220 Sum_probs=21.7
Q ss_pred cCceeeeecCCCccHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
++..+.|.|.+|+||||++..++..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567889999999999999998874
No 432
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.75 E-value=0.82 Score=39.83 Aligned_cols=52 Identities=12% Similarity=0.113 Sum_probs=33.9
Q ss_pred cCceeeeecCCCccHHHHHHHHHHHHHhcCCcEE-EEEeecCCchHHHHHHHHhH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS-VFAGVGERTREGNDLYHEMI 244 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~-V~alIGER~rEv~ef~~~l~ 244 (266)
+|.-+.|-|++|+||||++..+........ +. ++..-=.++.+..+.++++.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~--~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNG--IDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTT--CCCEEEEESSCSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcC--CCeeeeecCCCCCHHHHHHHHHH
Confidence 677899999999999999999887653332 33 33222223445555555544
No 433
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=88.47 E-value=0.26 Score=40.18 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=18.1
Q ss_pred eeeeecCCCccHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~ 214 (266)
|+.++|.+|+|||+|+..+..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 789999999999999875543
No 434
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=88.43 E-value=0.15 Score=42.44 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=19.3
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.+|+|||+|+..+..+
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999985554
No 435
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=88.39 E-value=0.27 Score=42.86 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=22.5
Q ss_pred cccCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 189 YAKGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 189 igkGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
+.|.-.+.|.|++|+|||+++..+++..
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344458999999999999999888753
No 436
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=88.39 E-value=0.55 Score=45.05 Aligned_cols=43 Identities=28% Similarity=0.445 Sum_probs=28.4
Q ss_pred ccCceeeeecCCCccHHHHHHHHHHHH---HhcCCcEEEEEeecCC
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELINNV---AKAHGGYSVFAGVGER 232 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~~~---a~~~~~v~V~alIGER 232 (266)
+...-++|.|++|+|||+|+.++++.. ...-++.+.++-+++.
T Consensus 145 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 145 GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 345678999999999999999887532 1111123555555554
No 437
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=88.38 E-value=0.29 Score=46.24 Aligned_cols=29 Identities=31% Similarity=0.491 Sum_probs=24.6
Q ss_pred cccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 187 APYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 187 ~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
--+..|.+++|+|.+|+|||||+..+...
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 34678899999999999999999988754
No 438
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=88.37 E-value=0.26 Score=48.44 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=24.1
Q ss_pred ccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 188 PYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 188 pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.+-.|+.++|.|++|+|||||+..|+..
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHHHHHHT
T ss_pred cccCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 3557889999999999999999988763
No 439
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=88.35 E-value=0.28 Score=41.76 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=21.9
Q ss_pred cCceeeeecCCCccHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
-|.-+.|.|+||+|||||+..++..
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4667899999999999999998863
No 440
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=88.31 E-value=0.26 Score=45.06 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.1
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.-+.|+|++|+|||+|+..+++.
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 34899999999999999988874
No 441
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=88.31 E-value=0.29 Score=50.04 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=23.5
Q ss_pred ccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 188 PYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 188 pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
.+-.|..++|.|++|+|||+|+..++.
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 356788999999999999999987765
No 442
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=88.30 E-value=0.19 Score=40.43 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=20.6
Q ss_pred cCceeeeecCCCccHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
+-=|+.++|.+|+|||+|+..+..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 455899999999999999988753
No 443
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=88.22 E-value=0.23 Score=43.61 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=20.9
Q ss_pred CceeeeecCCCccHHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
..-+.|.|++|+|||+|+..+++.
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999988774
No 444
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.12 E-value=0.22 Score=47.20 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=18.0
Q ss_pred eeeecCCCccHHHHHHHHHH
Q psy17544 195 IGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 195 ~gIfgg~G~GKT~L~~~ii~ 214 (266)
++|+|++|+|||||+..++.
T Consensus 34 I~lvG~sGaGKSTLln~L~g 53 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFL 53 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHhC
Confidence 49999999999999988864
No 445
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=88.09 E-value=0.29 Score=42.13 Aligned_cols=41 Identities=15% Similarity=0.168 Sum_probs=26.9
Q ss_pred CceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCCc
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 233 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER~ 233 (266)
+.-+.|.|++|+|||+|+..+.+. ....+.-.++.-+.+-.
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~-~~~~~~~~~~v~~~~~~ 69 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYL-SSRWQGPFISLNCAALN 69 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHT-STTTTSCEEEEEGGGSC
T ss_pred CCCEEEECCCCCcHHHHHHHHHHh-cCccCCCeEEEecCCCC
Confidence 456889999999999999887763 22111234555555443
No 446
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=88.05 E-value=0.26 Score=43.59 Aligned_cols=21 Identities=38% Similarity=0.551 Sum_probs=18.9
Q ss_pred eeeeecCCCccHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~ 214 (266)
.++|.|++|+||||++..++.
T Consensus 77 iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998873
No 447
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=88.00 E-value=0.3 Score=50.11 Aligned_cols=31 Identities=13% Similarity=0.009 Sum_probs=25.8
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|.-+. .+|+.++|.|+.|+|||||+.+++..
T Consensus 600 disl~-~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 600 PLNLS-PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp EEEEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccc-CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 44445 78999999999999999999987653
No 448
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=87.95 E-value=0.17 Score=41.82 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=20.9
Q ss_pred CceeeeecCCCccHHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
--|+.|+|.+|+|||+|+..+..+
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 348999999999999999988764
No 449
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=87.94 E-value=0.32 Score=44.09 Aligned_cols=24 Identities=38% Similarity=0.440 Sum_probs=20.8
Q ss_pred CceeeeecCCCccHHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+..+.|.|++|+|||+++..+++.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999988764
No 450
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.88 E-value=0.31 Score=43.76 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=19.7
Q ss_pred eeeecCCCccHHHHHHHHHHHH
Q psy17544 195 IGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 195 ~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
+.+.|++|+|||+++..+++..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999999888753
No 451
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.88 E-value=0.29 Score=43.32 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=20.7
Q ss_pred ceeeeecCCCccHHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
..+.|.|++|+|||+|+..+++..
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 349999999999999999888753
No 452
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=87.87 E-value=0.31 Score=42.14 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.4
Q ss_pred ceeeeecCCCccHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~ 214 (266)
-|+.|+|.+|+|||+|+..+..
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhC
Confidence 4789999999999999988764
No 453
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=87.87 E-value=0.31 Score=44.49 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=20.8
Q ss_pred CceeeeecCCCccHHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
..-+.|.|++|+|||+|+..+++.
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999988764
No 454
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=87.86 E-value=0.72 Score=38.84 Aligned_cols=29 Identities=17% Similarity=0.114 Sum_probs=24.1
Q ss_pred cccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544 189 YAKGGKIGLFGGAGVGKTVLIMELINNVA 217 (266)
Q Consensus 189 igkGQr~gIfgg~G~GKT~L~~~ii~~~a 217 (266)
..+|+=..+.|+.|+||||.+..++++..
T Consensus 5 ~~~g~i~v~~G~mgsGKTT~ll~~a~r~~ 33 (191)
T 1xx6_A 5 KDHGWVEVIVGPMYSGKSEELIRRIRRAK 33 (191)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 35677778888889999999999998864
No 455
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=87.76 E-value=0.33 Score=45.38 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=23.1
Q ss_pred cccCce--eeeecCCCccHHHHHHHHHHH
Q psy17544 189 YAKGGK--IGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 189 igkGQr--~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+-.|++ +.|+|++|+||||++..++..
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 456777 999999999999999888764
No 456
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=87.73 E-value=0.27 Score=51.27 Aligned_cols=31 Identities=13% Similarity=-0.010 Sum_probs=27.5
Q ss_pred ecccccccCceeeeecCCCccHHHHHHHHHH
Q psy17544 184 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 184 D~L~pigkGQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
|.-+.+.+|+-++|.|+.|+|||||+.+++.
T Consensus 665 dvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 665 NTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp EEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred cccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 6667788999999999999999999988753
No 457
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=87.69 E-value=0.29 Score=51.04 Aligned_cols=31 Identities=19% Similarity=-0.043 Sum_probs=27.5
Q ss_pred eecccccccCceeeeecCCCccHHHHHHHHH
Q psy17544 183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELI 213 (266)
Q Consensus 183 ID~L~pigkGQr~gIfgg~G~GKT~L~~~ii 213 (266)
-|.-+.+.+|+-++|.|+.|+|||||+.+++
T Consensus 653 ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 653 NDVYFEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp EEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred ccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3677778899999999999999999999874
No 458
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=87.68 E-value=0.2 Score=44.80 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=18.2
Q ss_pred cCceeeeecCCCccHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+.-.++|-|++|+||||++..+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3446899999999999999988764
No 459
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=87.63 E-value=0.32 Score=46.92 Aligned_cols=25 Identities=40% Similarity=0.579 Sum_probs=20.8
Q ss_pred cccCceeeeecCCCccHHHHHHHHHHH
Q psy17544 189 YAKGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 189 igkGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+.+| +.|.|++|+|||+|+..++..
T Consensus 48 ~p~g--vLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 48 MPKG--ILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp CCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred CCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 3355 899999999999999888764
No 460
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=87.60 E-value=0.38 Score=40.56 Aligned_cols=43 Identities=21% Similarity=0.222 Sum_probs=28.1
Q ss_pred eeeecCCCccHHHHHHHHHHHHHhcCCcEEEEEeecCC-chHHHHHHHH
Q psy17544 195 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGER-TREGNDLYHE 242 (266)
Q Consensus 195 ~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~alIGER-~rEv~ef~~~ 242 (266)
+.|.|++|+|||+++.+++.. +.-++|...++. ..|+.+-+..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-----~~~~~yiaT~~~~d~e~~~rI~~ 45 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-----APQVLYIATSQILDDEMAARIQH 45 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-----CSSEEEEECCCC------CHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc-----CCCeEEEecCCCCCHHHHHHHHH
Confidence 579999999999999988753 224678888765 4444444433
No 461
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=87.51 E-value=0.32 Score=43.04 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.8
Q ss_pred ceeeeecCCCccHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~ 214 (266)
-++.|+|.+|+|||||+..+..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 3789999999999999998875
No 462
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=87.35 E-value=0.11 Score=42.57 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=20.9
Q ss_pred cCceeeeecCCCccHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+.=|+.++|.+|+|||+|+..+..+
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 4458999999999999999877654
No 463
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.45 E-value=0.37 Score=41.02 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=21.8
Q ss_pred cCceeeeecCCCccHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
||..+.|-|..|+||||++..++..
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4667899999999999999988774
No 464
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=87.22 E-value=1.6 Score=41.80 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=24.9
Q ss_pred ccCceeeeecCCCccHHHHHHHHHHHHHh
Q psy17544 190 AKGGKIGLFGGAGVGKTVLIMELINNVAK 218 (266)
Q Consensus 190 gkGQr~gIfgg~G~GKT~L~~~ii~~~a~ 218 (266)
.++..+.+.|.+|+||||++..++...++
T Consensus 98 ~~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 98 EKPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 36788999999999999999999986543
No 465
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=87.19 E-value=0.38 Score=39.96 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.5
Q ss_pred CceeeeecCCCccHHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+..++|.|++|+||||++..++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999887663
No 466
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=87.06 E-value=0.34 Score=45.56 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.4
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
=|++|+|.+|+|||||+..+...
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999988753
No 467
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=87.03 E-value=0.34 Score=44.08 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=20.6
Q ss_pred CceeeeecCCCccHHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
..-+.|.|++|+|||+|+..+++.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999988764
No 468
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=87.03 E-value=0.13 Score=50.92 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=18.5
Q ss_pred eeeeecCCCccHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~ 214 (266)
.++|+|++|+|||||+..|+.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~G 67 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSG 67 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHS
T ss_pred eEEEECCCCChHHHHHHHHhC
Confidence 389999999999999987764
No 469
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=87.00 E-value=1.3 Score=37.91 Aligned_cols=52 Identities=15% Similarity=0.163 Sum_probs=34.8
Q ss_pred cCceeeeecCCCccHHHHHHHHHHHHHhcCCcE-EEEEeecC-CchHHHHHHHHhHh
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY-SVFAGVGE-RTREGNDLYHEMIE 245 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v-~V~alIGE-R~rEv~ef~~~l~~ 245 (266)
+|--+-|-|+.|+||||++..+...... .+ + .|+ ..-| .+.+..+.++++..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~-~~-~~~v~-~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ-LG-IRDMV-FTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH-TT-CCCEE-EEESSCSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-cC-CCcce-eeeCCCCCHHHHHHHHHHh
Confidence 4677889999999999999988876533 22 2 232 2333 45566677766654
No 470
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=86.83 E-value=0.35 Score=45.69 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.3
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
.-+.|+|++|+|||+|+..+++.
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999988764
No 471
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=86.73 E-value=0.38 Score=41.99 Aligned_cols=21 Identities=43% Similarity=0.558 Sum_probs=19.4
Q ss_pred eeeeecCCCccHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~ 214 (266)
++.++|.+|+|||+|+..+..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 789999999999999998875
No 472
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=86.72 E-value=0.31 Score=40.11 Aligned_cols=21 Identities=48% Similarity=0.773 Sum_probs=18.9
Q ss_pred eeeeecCCCccHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~ 214 (266)
|+.|+|.+|+|||+|+..+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999987763
No 473
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=86.70 E-value=0.5 Score=41.16 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=21.7
Q ss_pred cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
+...+.|.|++|+|||+++..+++..
T Consensus 45 ~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 45 SMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 33359999999999999999888753
No 474
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=86.51 E-value=0.25 Score=43.79 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=20.5
Q ss_pred CceeeeecCCCccHHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
..-+.|.|++|+|||+|+..+++.
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHh
Confidence 344999999999999999988774
No 475
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=86.34 E-value=0.16 Score=44.23 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.2
Q ss_pred ceeeeecCCCccHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~ 214 (266)
+-.+|+|++|+|||||+..|+-
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g 49 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVT 49 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5678999999999999987765
No 476
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=86.21 E-value=0.43 Score=44.20 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.9
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
-++|.|++|+|||+|+..++..
T Consensus 9 lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHHH
Confidence 4789999999999999999874
No 477
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=86.18 E-value=0.44 Score=44.95 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=22.1
Q ss_pred cCceeeeecCCCccHHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
.+..+.+.|++|+|||+|+..+++..
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 34569999999999999999888753
No 478
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=86.12 E-value=0.48 Score=43.48 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=20.9
Q ss_pred CceeeeecCCCccHHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+.-+.|.|++|+|||+|+..+++.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 567999999999999999988763
No 479
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=86.11 E-value=0.4 Score=41.67 Aligned_cols=23 Identities=22% Similarity=0.572 Sum_probs=20.4
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
-|+.|+|.+++|||+|+..++.+
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CeEEEEeCCCCCHHHHHHHHHCC
Confidence 48999999999999999988753
No 480
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=86.11 E-value=0.76 Score=47.03 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=35.8
Q ss_pred CceeeeecCCCccHHHHHHHHHHHHHhcCC-cEEEEEeecCCchHHHHHHHHhHhcC
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINNVAKAHG-GYSVFAGVGERTREGNDLYHEMIESG 247 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~~a~~~~-~v~V~alIGER~rEv~ef~~~l~~~g 247 (266)
+.-..|.||+|+|||+++..++....+..+ .+.+. --.+.-+.++.+.+.+.|
T Consensus 371 ~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~---a~tn~A~~~l~~~l~~~g 424 (800)
T 2wjy_A 371 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC---APSNIAVDQLTEKIHQTG 424 (800)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEE---ESSHHHHHHHHHHHHTTT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEE---cCcHHHHHHHHHHHHHhC
Confidence 345789999999999999999886543222 24333 344566666666766655
No 481
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=85.85 E-value=0.39 Score=43.05 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=21.2
Q ss_pred cCceeeeecCCCccHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+-.++.|+|.+|+|||||+..+..+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3347999999999999999988753
No 482
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=85.77 E-value=0.22 Score=39.22 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=19.0
Q ss_pred CceeeeecCCCccHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~ 214 (266)
+.-+.|.|++|+|||+++..+.+
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCC
T ss_pred CCcEEEECCCCccHHHHHHHHHH
Confidence 45689999999999999976543
No 483
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=85.53 E-value=0.44 Score=41.85 Aligned_cols=21 Identities=43% Similarity=0.683 Sum_probs=19.3
Q ss_pred eeeeecCCCccHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~ 214 (266)
+++++|.+|+|||||+..+..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g 25 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTG 25 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 789999999999999998875
No 484
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=85.52 E-value=0.54 Score=44.66 Aligned_cols=27 Identities=33% Similarity=0.345 Sum_probs=23.2
Q ss_pred cCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINNVA 217 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~~a 217 (266)
+...+.|.|.+|+||||++..++...+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999988654
No 485
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=85.52 E-value=0.47 Score=41.45 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=18.8
Q ss_pred eeeeecCCCccHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~ 214 (266)
.+.|.|.+|+||||++..++.
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998876
No 486
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=85.49 E-value=0.45 Score=48.53 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=22.0
Q ss_pred CceeeeecCCCccHHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.|++|+|||||+..++..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 999999999999999999988754
No 487
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=85.45 E-value=0.45 Score=41.24 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.3
Q ss_pred ceeeeecCCCccHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
=|++++|.+|+|||+|+..+..+
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999988754
No 488
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=85.44 E-value=0.81 Score=44.38 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=31.3
Q ss_pred CceeeeecCCCccHHHHHHHHHHHHHhcCC----cEEEEEeecCCchHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINNVAKAHG----GYSVFAGVGERTREGNDLYHE 242 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~~a~~~~----~v~V~alIGER~rEv~ef~~~ 242 (266)
.+.+.|.|++|+|||+++..-+.+..+.++ .+.++..--.-.+|+.+-+.+
T Consensus 22 ~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~ 76 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQ 76 (647)
T ss_dssp SSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHH
Confidence 456789999999999998876665544321 255554443334444444333
No 489
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=85.43 E-value=0.66 Score=45.25 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=26.9
Q ss_pred ccccccCceeeeecCCCccHHHHHHHHHHHHH
Q psy17544 186 LAPYAKGGKIGLFGGAGVGKTVLIMELINNVA 217 (266)
Q Consensus 186 L~pigkGQr~gIfgg~G~GKT~L~~~ii~~~a 217 (266)
.+.+.++..++|.|.+|+|||+++..|+....
T Consensus 161 ~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 161 VADLAKMPHLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp EEEGGGSCSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEcccCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 34567899999999999999999988876543
No 490
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=85.39 E-value=0.48 Score=43.45 Aligned_cols=40 Identities=23% Similarity=0.345 Sum_probs=28.2
Q ss_pred cCceeeeecCCCccHHHHHHHHHHHHHh--cCCcEEEEEeecC
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINNVAK--AHGGYSVFAGVGE 231 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~~a~--~~~~v~V~alIGE 231 (266)
.|.-+.|.|+||+|||||+..++..-.. +| |.+.+-.+++
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~d-D~~~i~~~~~ 184 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKRGHRLVAD-DNVEIREISK 184 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHTTCEEEES-SEEEEEESSS
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhcCCceecC-CeEEEEEcCC
Confidence 6778999999999999999998863110 12 3555554444
No 491
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=85.31 E-value=0.46 Score=41.28 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.8
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|+.++|.+|+|||+|+..+...
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999988753
No 492
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=85.25 E-value=0.47 Score=41.43 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=19.6
Q ss_pred eeeeecCCCccHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~ 215 (266)
++.++|.+|+|||||+..+...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 7899999999999999988653
No 493
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=85.23 E-value=0.59 Score=40.51 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=20.9
Q ss_pred ceeeeecCCCccHHHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
..+.|.|++|+|||+++..+++..
T Consensus 39 ~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 39 PHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECcCCcCHHHHHHHHHHHh
Confidence 358999999999999999888753
No 494
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=85.16 E-value=0.48 Score=44.11 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.5
Q ss_pred eeeeecCCCccHHHHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELINNV 216 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii~~~ 216 (266)
+++|+|.+|+|||||+..+.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999888753
No 495
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=85.15 E-value=0.88 Score=46.53 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=35.2
Q ss_pred CceeeeecCCCccHHHHHHHHHHHHHhc-CCcEEEEEeecCCchHHHHHHHHhHhcC
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINNVAKA-HGGYSVFAGVGERTREGNDLYHEMIESG 247 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~~a~~-~~~v~V~alIGER~rEv~ef~~~l~~~g 247 (266)
+.-..|.||+|+|||+++..++....+. ...+.|. .-...-+.++.+.+.+.|
T Consensus 375 ~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~---a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 375 RPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVC---APSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEE---ESSHHHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEE---cCcHHHHHHHHHHHHhhC
Confidence 4457899999999999999888755432 2124443 345556666666666654
No 496
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=85.11 E-value=0.45 Score=41.54 Aligned_cols=20 Identities=35% Similarity=0.649 Sum_probs=18.0
Q ss_pred eeeeecCCCccHHHHHHHHH
Q psy17544 194 KIGLFGGAGVGKTVLIMELI 213 (266)
Q Consensus 194 r~gIfgg~G~GKT~L~~~ii 213 (266)
++.++|.+|+|||||+..|.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 78999999999999998753
No 497
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=84.97 E-value=0.58 Score=43.59 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=21.5
Q ss_pred CceeeeecCCCccHHHHHHHHHHH
Q psy17544 192 GGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 192 GQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
|-+++|+|.+++|||||+..+..+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 568999999999999999988763
No 498
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=84.70 E-value=0.45 Score=41.63 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=21.6
Q ss_pred cCceeeeecCCCccHHHHHHHHHHH
Q psy17544 191 KGGKIGLFGGAGVGKTVLIMELINN 215 (266)
Q Consensus 191 kGQr~gIfgg~G~GKT~L~~~ii~~ 215 (266)
+.=|+.|+|.+|+|||+|+..+..+
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~ 178 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTN 178 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCChHHHHHHHHhC
Confidence 4458999999999999999888764
No 499
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=84.59 E-value=0.54 Score=42.04 Aligned_cols=22 Identities=32% Similarity=0.676 Sum_probs=19.7
Q ss_pred ceeeeecCCCccHHHHHHHHHH
Q psy17544 193 GKIGLFGGAGVGKTVLIMELIN 214 (266)
Q Consensus 193 Qr~gIfgg~G~GKT~L~~~ii~ 214 (266)
+.++|+|.+|+|||||+..+..
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5788999999999999998875
No 500
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=84.58 E-value=0.44 Score=48.62 Aligned_cols=55 Identities=20% Similarity=0.322 Sum_probs=36.3
Q ss_pred cccCceeeeecCCCccHHHHHHHHHHHHHhcCCcEEEE------EeecCCchHHHHHHHHhHh
Q psy17544 189 YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF------AGVGERTREGNDLYHEMIE 245 (266)
Q Consensus 189 igkGQr~gIfgg~G~GKT~L~~~ii~~~a~~~~~v~V~------alIGER~rEv~ef~~~l~~ 245 (266)
+-.+..++++|++|+|||+|+..++... ..+ -+.|- -.+|+..+.+.++++....
T Consensus 508 ~~~~~~vLL~GppGtGKT~Lakala~~~-~~~-~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~ 568 (806)
T 1ypw_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANEC-QAN-FISIKGPELLTMWFGESEANVREIFDKARQ 568 (806)
T ss_dssp CCCCCCCCCBCCTTSSHHHHHHHHHHHH-TCC-CCCCCCSSSTTCCTTTSSHHHHHHHHHHHH
T ss_pred CCCCceeEEECCCCCCHHHHHHHHHHHh-CCC-EEEEechHhhhhhcCccHHHHHHHHHHHHh
Confidence 4577889999999999999999888743 321 11110 1256666666666665544
Done!