RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17544
(266 letters)
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 179 bits (455), Expect = 4e-56
Identities = 123/134 (91%), Positives = 129/134 (96%)
Query: 125 IKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVD 184
I+IPVG ETLGRI+NVIGEPIDERGPI T + AAIHA+APEFVEMSVEQEILVTGIKVVD
Sbjct: 1 IRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVD 60
Query: 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMI 244
LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMI
Sbjct: 61 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMI 120
Query: 245 ESGVISLKDKSSKV 258
ESGVI+LKD +SKV
Sbjct: 121 ESGVINLKDATSKV 134
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 285
Score = 152 bits (385), Expect = 2e-45
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 125 IKIPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVD 184
+ +PVG E LGR+++ +G ID +GPI + + AP + +E + TGIK VD
Sbjct: 1 VDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVD 60
Query: 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-------YSVFAGVGERTREGN 237
L P +G + + G GKT + ++ I N + + G Y ++ +G++
Sbjct: 61 SLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVA 120
Query: 238 DLYHEMIESGVIS 250
L + ++ +
Sbjct: 121 QLVKRLTDADAMK 133
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1
ATP synthase {Spinach (Spinacia oleracea), chloroplast
[TaxId: 3562]}
Length = 276
Score = 131 bits (331), Expect = 1e-37
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 1/133 (0%)
Query: 127 IPVGAETLGRIINVIGEPIDERGPIDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLL 186
IPV LGR+IN + +PID RG I +S I + AP + E L TG+ +D +
Sbjct: 2 IPVSEAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAM 61
Query: 187 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 246
P +G + + G GKT + + I N + V+ +G++ + E
Sbjct: 62 IPVGRGQRELIIGDRQTGKTAVATDTILN-QQGQNVICVYVAIGQKASSVAQVVTNFQER 120
Query: 247 GVISLKDKSSKVN 259
G + ++
Sbjct: 121 GAMEYTIVVAETA 133
>d2jdid2 b.49.1.1 (D:10-81) F1 ATP synthase beta subunit, domain 1
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 72
Score = 113 bits (285), Expect = 4e-33
Identities = 61/71 (85%), Positives = 64/71 (90%)
Query: 54 GRVVAVIGAVVDVQFDHDLPPILNALEVEGRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 113
GR+VAVIGAVVDVQFD LPPILNALEV+GR RLVLEVAQHLGE+TVRTIAMDGTEGLV
Sbjct: 2 GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 61
Query: 114 RGQVVADSGNP 124
RGQ V DSG P
Sbjct: 62 RGQKVLDSGAP 72
>d1skye2 b.49.1.1 (E:1-82) F1 ATP synthase beta subunit, domain 1
{Bacillus sp., strain ps3 [TaxId: 1409]}
Length = 82
Score = 102 bits (257), Expect = 6e-29
Identities = 40/80 (50%), Positives = 55/80 (68%), Gaps = 8/80 (10%)
Query: 53 NGRVVAVIGAVVDVQFDHD-LPPILNALEVEGRSPR-------LVLEVAQHLGENTVRTI 104
GRV+ V+G VVDV+F++ LP I NAL+++ ++ L LEVA HLG++TVRTI
Sbjct: 3 RGRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTI 62
Query: 105 AMDGTEGLVRGQVVADSGNP 124
AM T+GL+RG V D+G P
Sbjct: 63 AMASTDGLIRGMEVIDTGAP 82
>d1fx0b2 b.49.1.1 (B:19-97) F1 ATP synthase beta subunit, domain 1
{Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Length = 79
Score = 100 bits (252), Expect = 3e-28
Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 54 GRVVAVIGAVVDVQFDHD-LPPILNALEVEGRSP-----RLVLEVAQHLGENTVRTIAMD 107
GR+ +IG V++V F +P I NAL V+GR + EV Q LG N VR +AM
Sbjct: 3 GRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMS 62
Query: 108 GTEGLVRGQVVADSGNP 124
T+GL RG V D+G P
Sbjct: 63 ATDGLTRGMEVIDTGAP 79
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 82.4 bits (203), Expect = 5e-19
Identities = 17/100 (17%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
Query: 151 IDTDKSAAIHADAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIM 210
I + +HA++ +E +V+DL +P +G + + GKT+L+
Sbjct: 3 ILFENLTPLHANSRLRMERGNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 61
Query: 211 ELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVIS 250
+ ++A H + + + E +++ V++
Sbjct: 62 NIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVA 101
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 32.4 bits (72), Expect = 0.042
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 2/61 (3%)
Query: 178 TGIKVVD--LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTRE 235
T +D L G G GKT ++ + N+ + V +
Sbjct: 18 TSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVA 77
Query: 236 G 236
Sbjct: 78 Q 78
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 31.9 bits (71), Expect = 0.051
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
++G+ G A GK+ LI +
Sbjct: 7 RLGVLGDARSGKSSLIHRFLTG 28
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 31.2 bits (69), Expect = 0.069
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
KI + G VGK+ L ++ +
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEG 27
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 31.2 bits (69), Expect = 0.074
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
K+ + GG GVGK+ L ++ I +
Sbjct: 8 KLVVVGGGGVGKSALTIQFIQS 29
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 31.1 bits (69), Expect = 0.081
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
K+ L G VGKT L++ N
Sbjct: 5 KVVLLGEGCVGKTSLVLRYCEN 26
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 31.1 bits (69), Expect = 0.085
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
K+ +FG AGVGK+ L++ +
Sbjct: 4 KLAIFGRAGVGKSALVVRFLTK 25
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 30.8 bits (68), Expect = 0.089
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
K+ L G A VGK+ +++ ++N
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSN 26
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 30.8 bits (68), Expect = 0.090
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 193 GKIGLFGGAGVGKTVLIMELINN 215
GK+ G GKT L+ L N+
Sbjct: 1 GKLLFLGLDNAGKTTLLHMLKND 23
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 31.8 bits (71), Expect = 0.090
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 195 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTR 234
+ + G G GK+VL+ EL + G+
Sbjct: 53 LLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 92
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 30.8 bits (68), Expect = 0.096
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
++ + GG GVGK+ L ++ I +
Sbjct: 7 RLVVVGGGGVGKSALTIQFIQS 28
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 30.7 bits (68), Expect = 0.098
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
K+ L G GVGK+ ++ + +
Sbjct: 6 KVCLLGDTGVGKSSIMWRFVED 27
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 30.8 bits (68), Expect = 0.10
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
K+ L G G GKT + +
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTG 26
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 30.7 bits (68), Expect = 0.11
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
K + G VGKT L++ N
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTN 26
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 30.7 bits (68), Expect = 0.11
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
++ +FG GVGK+ L++ +
Sbjct: 4 RVAVFGAGGVGKSSLVLRFVKG 25
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 30.7 bits (68), Expect = 0.12
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
K+ + G GKT L++ +
Sbjct: 4 KLVIVGDGACGKTCLLIVNSKD 25
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 30.4 bits (67), Expect = 0.13
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
K+ + G GVGK+ L ++
Sbjct: 6 KLVVVGDGGVGKSALTIQFFQK 27
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 30.8 bits (68), Expect = 0.13
Identities = 22/92 (23%), Positives = 26/92 (28%), Gaps = 6/92 (6%)
Query: 163 APEFVEMSVEQEILVTGIKVVD--LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK-- 218
A +F E L TG K +D L G LFG GK+ L L
Sbjct: 3 AADFHMRRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPL 62
Query: 219 --AHGGYSVFAGVGERTREGNDLYHEMIESGV 248
G E T L G+
Sbjct: 63 DIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGL 94
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 30.4 bits (67), Expect = 0.13
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
K+ + G +GVGKT L+ +N+
Sbjct: 4 KVIILGDSGVGKTSLMHRYVND 25
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 30.3 bits (67), Expect = 0.13
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
K+ + G GVGK+ L ++LI N
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQN 26
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 30.4 bits (67), Expect = 0.14
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
KI + G + GKT L+ +
Sbjct: 4 KIVVVGDSQCGKTALLHVFAKD 25
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 30.3 bits (67), Expect = 0.14
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
K + G VGKT L+M N+
Sbjct: 11 KCVVVGDGAVGKTCLLMSYAND 32
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 30.7 bits (68), Expect = 0.15
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 178 TGIKVVD--LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTRE 235
T I+ D G + G +G GKT+ ++ + N VF E ++
Sbjct: 10 TMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQD 69
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 30.3 bits (67), Expect = 0.15
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
K+ + G GVGK+ L ++ +
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQG 26
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 30.1 bits (66), Expect = 0.16
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
K+ + G VGK+ +I
Sbjct: 4 KMVVVGNGAVGKSSMIQRYCKG 25
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 30.1 bits (66), Expect = 0.16
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
++ L G GVGK+ L
Sbjct: 5 RVVLIGEQGVGKSTLANIFAGV 26
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 30.3 bits (67), Expect = 0.17
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
K+ + G GVGK+ L ++ + +
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYD 27
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 30.1 bits (66), Expect = 0.17
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
K+ + G +GVGKT L+ + +N
Sbjct: 4 KVIILGDSGVGKTSLMNQYVNK 25
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 29.9 bits (66), Expect = 0.18
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
K+ + G GVGK+ L ++ +
Sbjct: 5 KVVVLGSGGVGKSALTVQFVTG 26
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 30.0 bits (66), Expect = 0.20
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
K+ L G + VGK+ L++ +
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKG 29
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 30.5 bits (67), Expect = 0.20
Identities = 12/74 (16%), Positives = 23/74 (31%)
Query: 190 AKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVI 249
+ + G GK+ +I IN + + + D E+ +
Sbjct: 27 LRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINK 86
Query: 250 SLKDKSSKVNFLFN 263
+K S + L N
Sbjct: 87 LVKRLPSLLKALKN 100
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 29.9 bits (66), Expect = 0.20
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
K+ G VGKT LI + +
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYD 23
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 29.7 bits (65), Expect = 0.21
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
K+ L G GVGK+ L
Sbjct: 3 KVLLLGAPGVGKSALARIFGGV 24
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 29.9 bits (66), Expect = 0.22
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
K + G AG GK+ L+ + I
Sbjct: 7 KFLVIGNAGTGKSCLLHQFIEK 28
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 30.1 bits (66), Expect = 0.22
Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 178 TGIKVVD--LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 220
TG K +D L G +FG GKT + L
Sbjct: 7 TGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPI 51
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 30.0 bits (66), Expect = 0.22
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
K + G VGKT L++ N
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTN 28
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 30.1 bits (67), Expect = 0.25
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 181 KVVDLLAPYA-----KGGK----IGLFGGAGVGKTVLIMELINNVAKAHGG 222
++ L Y G K I G G GK+ +++ N++ + +GG
Sbjct: 7 YTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGG 57
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 29.7 bits (65), Expect = 0.26
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 181 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 215
V+ L Y K GK+ G GKT L+ L ++
Sbjct: 2 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDD 36
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 30.0 bits (66), Expect = 0.27
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 165 EFVEMSVEQEILVTGIKVVD-LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 220
E + +L +G ++ G I + G+G+GK+ + + A
Sbjct: 7 EHLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM 63
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 29.4 bits (65), Expect = 0.27
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
KI + G +GVGK+ L++ ++
Sbjct: 9 KILIIGESGVGKSSLLLRFTDD 30
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 29.5 bits (65), Expect = 0.29
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
K + G GVGK+ L+ +
Sbjct: 6 KYIIIGDMGVGKSCLLHQFTEK 27
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 29.5 bits (65), Expect = 0.30
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
K+ L G +GVGKT L++ +
Sbjct: 8 KVMLVGDSGVGKTCLLVRFKDG 29
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 29.3 bits (64), Expect = 0.31
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 194 KIGLFGGAGVGKTVLIMEL 212
+ + GG GK+VL+ +L
Sbjct: 9 TVAILGGESSGKSVLVNKL 27
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 29.2 bits (64), Expect = 0.32
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
K+ L G GVGK+ L+ + N
Sbjct: 8 KVILLGDGGVGKSSLMNRYVTN 29
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 29.5 bits (65), Expect = 0.32
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
K+ G +GVGKT + +N
Sbjct: 7 KLLALGDSGVGKTTFLYRYTDN 28
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 29.2 bits (64), Expect = 0.33
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
KI + G + VGKT L
Sbjct: 4 KIIVIGDSNVGKTCLTYRFCAG 25
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 29.7 bits (66), Expect = 0.34
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 4/86 (4%)
Query: 159 IHADAPEFVEMSVEQEILVTGI-KVVDLLAPYAKGG-KIGLFGGAGVGKTVLIMELINNV 216
I + +E+ + + + D L + + G G GK+ I L
Sbjct: 21 ISQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIG 80
Query: 217 AKAHGGYSVFAGVGERTREGNDLYHE 242
+ G + GV E T E + H
Sbjct: 81 NEEEG--AAKTGVVEVTMERHPYKHP 104
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 29.4 bits (65), Expect = 0.34
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
K+ L G +GVGK+ L++ ++
Sbjct: 8 KLLLIGNSGVGKSCLLLRFSDD 29
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 29.1 bits (64), Expect = 0.34
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
K+ L G +GVGK+ L+ N
Sbjct: 6 KVVLIGDSGVGKSNLLSRFTRN 27
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 29.1 bits (64), Expect = 0.35
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
K + G GVGK+ L+++ +
Sbjct: 5 KYIIIGDTGVGKSCLLLQFTDK 26
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 29.0 bits (64), Expect = 0.37
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
KI L G AGVGKT L+
Sbjct: 7 KIVLIGNAGVGKTCLVRRFTQG 28
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 29.0 bits (64), Expect = 0.44
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
K+ L G +GVGKT ++ +
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSED 29
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 28.5 bits (63), Expect = 0.46
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 172 EQEILVTGIKVVDLLAPYA--KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS-VFAG 228
E +L G K ++L K + L G G GKT L ++ + S +
Sbjct: 11 EFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTL 70
Query: 229 VGERTREGNDLYH 241
V E G +YH
Sbjct: 71 VEEYNIAGKMIYH 83
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 29.3 bits (64), Expect = 0.46
Identities = 18/105 (17%), Positives = 29/105 (27%), Gaps = 2/105 (1%)
Query: 163 APEFVEMSVEQEILVTGIKVVD--LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 220
A E+ E + TG + D L FG GKT L L
Sbjct: 6 AFEYSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPG 65
Query: 221 GGYSVFAGVGERTREGNDLYHEMIESGVISLKDKSSKVNFLFNSR 265
G + E + + D + ++ + +R
Sbjct: 66 AGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYAR 110
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 29.1 bits (64), Expect = 0.48
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 178 TGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 226
+G+ +D + + K I G G GKT+L+ + N +F
Sbjct: 10 SGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILF 60
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 28.5 bits (62), Expect = 0.52
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
+I + G GKT ++ +L
Sbjct: 2 RILMVGLDAAGKTTILYKLKLG 23
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 28.6 bits (63), Expect = 0.64
Identities = 11/90 (12%), Positives = 29/90 (32%), Gaps = 6/90 (6%)
Query: 181 KVVDLL--APYAKGGKIGLFGGAGVGKTVLIMELINN---VAKAHGGYSVFAGVGERTRE 235
+V+ L + L G AG GK+V+ + ++ + + V+ +
Sbjct: 31 RVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPK 90
Query: 236 GNDLYHEMIESGVISLKDKSSKVNFLFNSR 265
+ ++ +D + +
Sbjct: 91 -STFDLFTDILLMLKSEDDLLNFPSVEHVT 119
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 28.2 bits (62), Expect = 0.69
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
KI L G +GVGK+ L++ + +
Sbjct: 4 KILLIGDSGVGKSCLLVRFVED 25
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 28.7 bits (63), Expect = 0.75
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 181 KVVDLLAPYAKGG-KIGLFGGAGVGKTVLIMELI 213
+++D + PY ++G+ G G GK+ +
Sbjct: 42 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFG 75
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 28.5 bits (62), Expect = 0.75
Identities = 10/50 (20%), Positives = 16/50 (32%)
Query: 185 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTR 234
+L G L G GK++L ++L +A V
Sbjct: 22 VLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVI 71
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 28.0 bits (61), Expect = 0.79
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 194 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSV 225
KI + G GVGKT L+ +++ + K G+
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWT 33
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 28.1 bits (61), Expect = 0.88
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 195 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 227
+ L G GVGKT LI + + + F
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY 36
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 28.1 bits (61), Expect = 1.0
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
Query: 181 KVVDLLAPYAKGGKIG---LFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGN 237
V +L K + +G G GKT I+ L + S + G
Sbjct: 19 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGI 78
Query: 238 DLYHEMIES 246
+ E +++
Sbjct: 79 SIVREKVKN 87
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 28.2 bits (61), Expect = 1.1
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 190 AKGGKIGLFGGAGVGKTVLIMELINNVAKAHG 221
G + GAG GKT +I I ++ + G
Sbjct: 12 FVTGPCLVLAGAGSGKTRVITNKIAHLIRGCG 43
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 27.7 bits (60), Expect = 1.3
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 163 APEFVEMSVEQEILVTGIKVVD--LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH 220
A E+++ + TG K +D L +FG G GKT L L V
Sbjct: 5 ADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPP 64
>d1jfla1 c.78.2.1 (A:1-115) Aspartate racemase {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 115
Score = 26.8 bits (59), Expect = 1.5
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 194 KIGLFGGAGVGKTVLIMELINNVAKAHGG 222
IG+ GG G T + I A
Sbjct: 3 TIGILGGMGPLATAELFRRIVIKTPAKRD 31
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 27.2 bits (59), Expect = 1.7
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
+I L G GKT L+ +L +
Sbjct: 18 RILLLGLDNAGKTTLLKQLASE 39
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 26.9 bits (58), Expect = 1.8
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 191 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 226
KG I + G G GKT + + A G+
Sbjct: 4 KGINILITGTPGTGKTSMAEMI----AAELDGFQHL 35
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 27.0 bits (58), Expect = 1.9
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 193 GKIGLFGGAGVGKTVLIMELIN 214
G + + G VGK+ L+ L+
Sbjct: 6 GFVAIVGKPNVGKSTLLNNLLG 27
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 27.0 bits (59), Expect = 1.9
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 189 YAKGGKIGLFGGAGVGKTVLIMELINN 215
Y ++ L G GK+ ++ ++
Sbjct: 3 YRATHRLLLLGAGESGKSTIVKQMRIL 29
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 27.2 bits (59), Expect = 2.1
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 181 KVVDLLAPYAKGG-KIGLFGGAGVGKTVLIMELI 213
++D + P ++G+ G GVGK+ I L
Sbjct: 39 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALG 72
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 26.6 bits (57), Expect = 2.1
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 192 GGKIGLFGGAGVGKTVLIMELIN 214
G K+ + G GK+ L+ L
Sbjct: 1 GMKVVIAGRPNAGKSSLLNALAG 23
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 26.8 bits (58), Expect = 2.4
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
+I + G GKT ++ +L
Sbjct: 14 RILMLGLDAAGKTTILYKLKLG 35
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 26.9 bits (58), Expect = 2.4
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
+I + G G GKT ++ L
Sbjct: 19 RILILGLDGAGKTTILYRLQIG 40
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 26.4 bits (57), Expect = 2.8
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
K+ L G GK+ I ++
Sbjct: 4 KLLLLGTGESGKSTFIKQMRII 25
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 26.3 bits (57), Expect = 2.9
Identities = 6/45 (13%), Positives = 11/45 (24%)
Query: 195 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL 239
+ G GKT L+ + + + G
Sbjct: 4 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPE 48
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 26.1 bits (56), Expect = 4.5
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 194 KIGLFGGAGVGKTVLIMELINN 215
+ G GKT+L + L+
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTG 23
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 25.4 bits (55), Expect = 7.6
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 190 AKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 228
G + G+ G +G GKT M +I + G F
Sbjct: 29 ENGERFGILGPSGAGKTTF-MRIIAGLDVPSTGELYFDD 66
>d1p4ta_ f.4.1.1 (A:) Outer membrane protein NspA {Neisseria
meningitidis [TaxId: 487]}
Length = 155
Score = 25.0 bits (54), Expect = 7.9
Identities = 4/48 (8%), Positives = 15/48 (31%)
Query: 183 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVG 230
+ + + + GA + ++L + + + + G
Sbjct: 66 ASAIYDFDTQSPVKPYLGARLSLNRASVDLGGSDSFSQTSIGLGVLTG 113
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.136 0.381
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 924,836
Number of extensions: 43708
Number of successful extensions: 285
Number of sequences better than 10.0: 1
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 101
Length of query: 266
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 182
Effective length of database: 1,254,276
Effective search space: 228278232
Effective search space used: 228278232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.1 bits)