BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17547
(186 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6MZP7|LIN54_HUMAN Protein lin-54 homolog OS=Homo sapiens GN=LIN54 PE=1 SV=3
Length = 749
Score = 162 bits (409), Expect = 2e-39, Method: Composition-based stats.
Identities = 73/95 (76%), Positives = 84/95 (88%)
Query: 92 RPRKPCNCTKSMCLKLYCDCFANGEFCYQCNCNSCFNNIEHEDDRHHAIRQCLERNPNAF 151
RPRKPCNCTKS+CLKLYCDCFANGEFC CNC +C+NN+EHE++R AI+ CL+RNP AF
Sbjct: 520 RPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAF 579
Query: 152 RPKIGKCLVGEGERRHTKGCNCKRSGCLKNYCECY 186
+PKIGK GE +RRH+KGCNCKRSGCLKNYCECY
Sbjct: 580 KPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECY 614
Score = 128 bits (322), Expect = 2e-29, Method: Composition-based stats.
Identities = 60/81 (74%), Positives = 70/81 (86%)
Query: 1 YCDCFANGEFCYQCNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRPKIGKCLVGEGERRH 60
YCDCFANGEFC CNC +C+NN+EHE++R AI+ CL+RNP AF+PKIGK GE +RRH
Sbjct: 536 YCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAFKPKIGKGKEGESDRRH 595
Query: 61 TKGCNCKRSGCLKNYCECYEA 81
+KGCNCKRSGCLKNYCECYEA
Sbjct: 596 SKGCNCKRSGCLKNYCECYEA 616
Score = 54.7 bits (130), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 45/124 (36%), Gaps = 43/124 (34%)
Query: 55 EGERRHTKGCNCKRSGCLKNYCECYEAG-----------ARTLE---------------- 87
E R K CNC +S CLK YC+C+ G LE
Sbjct: 516 ESASRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRN 575
Query: 88 PNGIRPR--------------KPCNCTKSMCLKLYCDCFANGEFCYQ-CNCNSCFNNIEH 132
P +P+ K CNC +S CLK YC+C+ C C C C N E
Sbjct: 576 PEAFKPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGC-KNFEE 634
Query: 133 EDDR 136
+R
Sbjct: 635 SPER 638
>sp|Q641Z1|LIN54_RAT Protein lin-54 homolog OS=Rattus norvegicus GN=Lin54 PE=2 SV=2
Length = 749
Score = 162 bits (409), Expect = 2e-39, Method: Composition-based stats.
Identities = 73/95 (76%), Positives = 84/95 (88%)
Query: 92 RPRKPCNCTKSMCLKLYCDCFANGEFCYQCNCNSCFNNIEHEDDRHHAIRQCLERNPNAF 151
RPRKPCNCTKS+CLKLYCDCFANGEFC CNC +C+NN+EHE++R AI+ CL+RNP AF
Sbjct: 520 RPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAF 579
Query: 152 RPKIGKCLVGEGERRHTKGCNCKRSGCLKNYCECY 186
+PKIGK GE +RRH+KGCNCKRSGCLKNYCECY
Sbjct: 580 KPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECY 614
Score = 128 bits (322), Expect = 2e-29, Method: Composition-based stats.
Identities = 60/81 (74%), Positives = 70/81 (86%)
Query: 1 YCDCFANGEFCYQCNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRPKIGKCLVGEGERRH 60
YCDCFANGEFC CNC +C+NN+EHE++R AI+ CL+RNP AF+PKIGK GE +RRH
Sbjct: 536 YCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAFKPKIGKGKEGESDRRH 595
Query: 61 TKGCNCKRSGCLKNYCECYEA 81
+KGCNCKRSGCLKNYCECYEA
Sbjct: 596 SKGCNCKRSGCLKNYCECYEA 616
Score = 54.7 bits (130), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 45/124 (36%), Gaps = 43/124 (34%)
Query: 55 EGERRHTKGCNCKRSGCLKNYCECYEAG-----------ARTLE---------------- 87
E R K CNC +S CLK YC+C+ G LE
Sbjct: 516 ESASRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRN 575
Query: 88 PNGIRPR--------------KPCNCTKSMCLKLYCDCFANGEFCYQ-CNCNSCFNNIEH 132
P +P+ K CNC +S CLK YC+C+ C C C C N E
Sbjct: 576 PEAFKPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGC-KNFEE 634
Query: 133 EDDR 136
+R
Sbjct: 635 SPER 638
>sp|Q571G4|LIN54_MOUSE Protein lin-54 homolog OS=Mus musculus GN=Lin54 PE=2 SV=2
Length = 749
Score = 162 bits (409), Expect = 2e-39, Method: Composition-based stats.
Identities = 73/95 (76%), Positives = 84/95 (88%)
Query: 92 RPRKPCNCTKSMCLKLYCDCFANGEFCYQCNCNSCFNNIEHEDDRHHAIRQCLERNPNAF 151
RPRKPCNCTKS+CLKLYCDCFANGEFC CNC +C+NN+EHE++R AI+ CL+RNP AF
Sbjct: 520 RPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAF 579
Query: 152 RPKIGKCLVGEGERRHTKGCNCKRSGCLKNYCECY 186
+PKIGK GE +RRH+KGCNCKRSGCLKNYCECY
Sbjct: 580 KPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECY 614
Score = 128 bits (322), Expect = 2e-29, Method: Composition-based stats.
Identities = 60/81 (74%), Positives = 70/81 (86%)
Query: 1 YCDCFANGEFCYQCNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRPKIGKCLVGEGERRH 60
YCDCFANGEFC CNC +C+NN+EHE++R AI+ CL+RNP AF+PKIGK GE +RRH
Sbjct: 536 YCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAFKPKIGKGKEGESDRRH 595
Query: 61 TKGCNCKRSGCLKNYCECYEA 81
+KGCNCKRSGCLKNYCECYEA
Sbjct: 596 SKGCNCKRSGCLKNYCECYEA 616
Score = 54.7 bits (130), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 45/124 (36%), Gaps = 43/124 (34%)
Query: 55 EGERRHTKGCNCKRSGCLKNYCECYEAG-----------ARTLE---------------- 87
E R K CNC +S CLK YC+C+ G LE
Sbjct: 516 ESTSRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRN 575
Query: 88 PNGIRPR--------------KPCNCTKSMCLKLYCDCFANGEFCYQ-CNCNSCFNNIEH 132
P +P+ K CNC +S CLK YC+C+ C C C C N E
Sbjct: 576 PEAFKPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGC-KNFEE 634
Query: 133 EDDR 136
+R
Sbjct: 635 SPER 638
>sp|Q0IHV2|LIN54_XENTR Protein lin-54 homolog OS=Xenopus tropicalis GN=lin54 PE=2 SV=1
Length = 741
Score = 160 bits (405), Expect = 4e-39, Method: Composition-based stats.
Identities = 73/95 (76%), Positives = 84/95 (88%)
Query: 92 RPRKPCNCTKSMCLKLYCDCFANGEFCYQCNCNSCFNNIEHEDDRHHAIRQCLERNPNAF 151
RPRKPCNCTKS+CLKLYCDCFANGEFC CNC +C+NN+EHE++R AI+ CL+RNP AF
Sbjct: 512 RPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAF 571
Query: 152 RPKIGKCLVGEGERRHTKGCNCKRSGCLKNYCECY 186
+PKIGK GE +RRH+KGCNCKRSGCLKNYCECY
Sbjct: 572 KPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECY 606
Score = 127 bits (319), Expect = 4e-29, Method: Composition-based stats.
Identities = 60/81 (74%), Positives = 70/81 (86%)
Query: 1 YCDCFANGEFCYQCNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRPKIGKCLVGEGERRH 60
YCDCFANGEFC CNC +C+NN+EHE++R AI+ CL+RNP AF+PKIGK GE +RRH
Sbjct: 528 YCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAFKPKIGKGKEGESDRRH 587
Query: 61 TKGCNCKRSGCLKNYCECYEA 81
+KGCNCKRSGCLKNYCECYEA
Sbjct: 588 SKGCNCKRSGCLKNYCECYEA 608
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 49/137 (35%), Gaps = 43/137 (31%)
Query: 42 NAFRPKIGKCLVGEGERRHTKGCNCKRSGCLKNYCECYEAG-----------ARTLE--- 87
N R + + E R K CNC +S CLK YC+C+ G LE
Sbjct: 495 NQPRGPLNGIISSESASRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHEN 554
Query: 88 -------------PNGIRPR--------------KPCNCTKSMCLKLYCDCFANGEFCYQ 120
P +P+ K CNC +S CLK YC+C+ C
Sbjct: 555 ERQKAIKACLDRNPEAFKPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECYEAKIMCSS 614
Query: 121 -CNCNSCFNNIEHEDDR 136
C C C N E +R
Sbjct: 615 ICKCIGC-KNFEESPER 630
>sp|A1Z9E2|LIN54_DROME Protein lin-54 homolog OS=Drosophila melanogaster GN=mip120 PE=1
SV=1
Length = 950
Score = 153 bits (387), Expect = 6e-37, Method: Composition-based stats.
Identities = 64/93 (68%), Positives = 73/93 (78%), Gaps = 1/93 (1%)
Query: 94 RKPCNCTKSMCLKLYCDCFANGEFCYQCNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRP 153
RK CNC+KS CLKLYCDCFANGEFC C C CFNN+++E +R AIR CL+RNP+AF+P
Sbjct: 738 RKHCNCSKSQCLKLYCDCFANGEFCQDCTCKDCFNNLDYEVERERAIRSCLDRNPSAFKP 797
Query: 154 KIGKCLVGEGERRHTKGCNCKRSGCLKNYCECY 186
KI G+ R H KGCNCKRSGCLKNYCECY
Sbjct: 798 KITAPNSGD-MRLHNKGCNCKRSGCLKNYCECY 829
Score = 132 bits (332), Expect = 1e-30, Method: Composition-based stats.
Identities = 55/81 (67%), Positives = 63/81 (77%), Gaps = 1/81 (1%)
Query: 1 YCDCFANGEFCYQCNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRPKIGKCLVGEGERRH 60
YCDCFANGEFC C C CFNN+++E +R AIR CL+RNP+AF+PKI G+ R H
Sbjct: 752 YCDCFANGEFCQDCTCKDCFNNLDYEVERERAIRSCLDRNPSAFKPKITAPNSGD-MRLH 810
Query: 61 TKGCNCKRSGCLKNYCECYEA 81
KGCNCKRSGCLKNYCECYEA
Sbjct: 811 NKGCNCKRSGCLKNYCECYEA 831
>sp|Q08CM4|LIN54_DANRE Protein lin-54 homolog OS=Danio rerio GN=lin54 PE=1 SV=1
Length = 771
Score = 152 bits (383), Expect = 2e-36, Method: Composition-based stats.
Identities = 75/105 (71%), Positives = 86/105 (81%), Gaps = 1/105 (0%)
Query: 82 GARTLEPNGIRPRKPCNCTKSMCLKLYCDCFANGEFCYQCNCNSCFNNIEHEDDRHHAIR 141
G T E N RPRKPCNCT+S CLKLYCDCFANGEFC CNC +CFNN++HE +R AI+
Sbjct: 534 GLSTSEANS-RPRKPCNCTRSQCLKLYCDCFANGEFCNNCNCVNCFNNLDHESERLKAIK 592
Query: 142 QCLERNPNAFRPKIGKCLVGEGERRHTKGCNCKRSGCLKNYCECY 186
CL+RNP AF+PKIGK GE +RRH+KGCNCK+SGCLKNYCECY
Sbjct: 593 ACLDRNPVAFKPKIGKGKEGESDRRHSKGCNCKKSGCLKNYCECY 637
Score = 119 bits (298), Expect = 1e-26, Method: Composition-based stats.
Identities = 59/81 (72%), Positives = 69/81 (85%)
Query: 1 YCDCFANGEFCYQCNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRPKIGKCLVGEGERRH 60
YCDCFANGEFC CNC +CFNN++HE +R AI+ CL+RNP AF+PKIGK GE +RRH
Sbjct: 559 YCDCFANGEFCNNCNCVNCFNNLDHESERLKAIKACLDRNPVAFKPKIGKGKEGESDRRH 618
Query: 61 TKGCNCKRSGCLKNYCECYEA 81
+KGCNCK+SGCLKNYCECYEA
Sbjct: 619 SKGCNCKKSGCLKNYCECYEA 639
Score = 57.0 bits (136), Expect = 7e-08, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 43/124 (34%), Gaps = 43/124 (34%)
Query: 55 EGERRHTKGCNCKRSGCLKNYCECYEAGARTL---------------------------E 87
E R K CNC RS CLK YC+C+ G
Sbjct: 539 EANSRPRKPCNCTRSQCLKLYCDCFANGEFCNNCNCVNCFNNLDHESERLKAIKACLDRN 598
Query: 88 PNGIRPR--------------KPCNCTKSMCLKLYCDCFANGEFCYQ-CNCNSCFNNIEH 132
P +P+ K CNC KS CLK YC+C+ C C C C N E
Sbjct: 599 PVAFKPKIGKGKEGESDRRHSKGCNCKKSGCLKNYCECYEAKIMCSSICKCMGC-KNFEE 657
Query: 133 EDDR 136
+R
Sbjct: 658 SPER 661
>sp|Q5RBN8|LIN54_PONAB Protein lin-54 homolog OS=Pongo abelii GN=LIN54 PE=2 SV=1
Length = 528
Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/95 (76%), Positives = 84/95 (88%)
Query: 92 RPRKPCNCTKSMCLKLYCDCFANGEFCYQCNCNSCFNNIEHEDDRHHAIRQCLERNPNAF 151
RPRKPCNCTKS+CLKLYCDCFANGEFC CNC +C+NN+EHE++R AI+ CL+RNP AF
Sbjct: 299 RPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAF 358
Query: 152 RPKIGKCLVGEGERRHTKGCNCKRSGCLKNYCECY 186
+PKIGK GE +RRH+KGCNCKRSGCLKNYCECY
Sbjct: 359 KPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECY 393
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/81 (74%), Positives = 70/81 (86%)
Query: 1 YCDCFANGEFCYQCNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRPKIGKCLVGEGERRH 60
YCDCFANGEFC CNC +C+NN+EHE++R AI+ CL+RNP AF+PKIGK GE +RRH
Sbjct: 315 YCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAFKPKIGKGKEGESDRRH 374
Query: 61 TKGCNCKRSGCLKNYCECYEA 81
+KGCNCKRSGCLKNYCECYEA
Sbjct: 375 SKGCNCKRSGCLKNYCECYEA 395
>sp|Q95QD7|LIN54_CAEEL Protein lin-54 OS=Caenorhabditis elegans GN=lin-54 PE=1 SV=1
Length = 435
Score = 140 bits (353), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/95 (71%), Positives = 75/95 (78%), Gaps = 2/95 (2%)
Query: 94 RKPCNCTKSMCLKLYCDCFANGEFCYQCNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRP 153
RKPCNCTKS CLKLYCDCFANGEFC CNC C NNIE++ R AIRQ LERNPNAF+P
Sbjct: 174 RKPCNCTKSQCLKLYCDCFANGEFCRDCNCKDCHNNIEYDSQRSKAIRQSLERNPNAFKP 233
Query: 154 KIGKCL--VGEGERRHTKGCNCKRSGCLKNYCECY 186
KIG + + ER H KGC+CK+SGCLKNYCECY
Sbjct: 234 KIGIARGGITDIERLHQKGCHCKKSGCLKNYCECY 268
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 64/83 (77%), Gaps = 2/83 (2%)
Query: 1 YCDCFANGEFCYQCNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRPKIGKCL--VGEGER 58
YCDCFANGEFC CNC C NNIE++ R AIRQ LERNPNAF+PKIG + + ER
Sbjct: 188 YCDCFANGEFCRDCNCKDCHNNIEYDSQRSKAIRQSLERNPNAFKPKIGIARGGITDIER 247
Query: 59 RHTKGCNCKRSGCLKNYCECYEA 81
H KGC+CK+SGCLKNYCECYEA
Sbjct: 248 LHQKGCHCKKSGCLKNYCECYEA 270
>sp|Q5XHX9|MTL5_RAT Tesmin OS=Rattus norvegicus GN=Mtl5 PE=2 SV=2
Length = 475
Score = 110 bits (275), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 64/81 (79%), Gaps = 4/81 (4%)
Query: 1 YCDCFANGEFCYQCNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRPKIGKCLVGEGERRH 60
YCDCF++G+FC C+CN N+ HE +R AI+ CL+RNP AF+PK+GK +G + RH
Sbjct: 278 YCDCFSSGDFCNSCSCN----NLRHELERFKAIKACLDRNPEAFQPKMGKGRLGAAKLRH 333
Query: 61 TKGCNCKRSGCLKNYCECYEA 81
+KGCNCKRSGCLKNYCECYEA
Sbjct: 334 SKGCNCKRSGCLKNYCECYEA 354
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/84 (59%), Positives = 64/84 (76%), Gaps = 4/84 (4%)
Query: 103 MCLKLYCDCFANGEFCYQCNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRPKIGKCLVGE 162
+ L YCDCF++G+FC C+CN N+ HE +R AI+ CL+RNP AF+PK+GK +G
Sbjct: 273 IALAGYCDCFSSGDFCNSCSCN----NLRHELERFKAIKACLDRNPEAFQPKMGKGRLGA 328
Query: 163 GERRHTKGCNCKRSGCLKNYCECY 186
+ RH+KGCNCKRSGCLKNYCECY
Sbjct: 329 AKLRHSKGCNCKRSGCLKNYCECY 352
>sp|Q9SL70|TCX6_ARATH Protein tesmin/TSO1-like CXC 6 OS=Arabidopsis thaliana GN=TCX6 PE=1
SV=1
Length = 571
Score = 110 bits (275), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 68/104 (65%), Gaps = 11/104 (10%)
Query: 94 RKPCNCTKSMCLKLYCDCFANGEFCYQCNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRP 153
+K CNC S CLKLYC+CFA+G +C CNC +CFNN+E+E R A+ LERNPNAFRP
Sbjct: 118 KKQCNCKHSRCLKLYCECFASGTYCDGCNCVNCFNNVENEPARRQAVESTLERNPNAFRP 177
Query: 154 KIGKCLVGEGE-----------RRHTKGCNCKRSGCLKNYCECY 186
KI G + RH KGC+CK+SGCLK YCEC+
Sbjct: 178 KIAASPHGGRDNREEVGDVVMLARHNKGCHCKKSGCLKKYCECF 221
Score = 97.4 bits (241), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 60/92 (65%), Gaps = 11/92 (11%)
Query: 1 YCDCFANGEFCYQCNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRPKIGKCLVGEGE--- 57
YC+CFA+G +C CNC +CFNN+E+E R A+ LERNPNAFRPKI G +
Sbjct: 132 YCECFASGTYCDGCNCVNCFNNVENEPARRQAVESTLERNPNAFRPKIAASPHGGRDNRE 191
Query: 58 --------RRHTKGCNCKRSGCLKNYCECYEA 81
RH KGC+CK+SGCLK YCEC++A
Sbjct: 192 EVGDVVMLARHNKGCHCKKSGCLKKYCECFQA 223
>sp|Q9WTJ6|MTL5_MOUSE Tesmin OS=Mus musculus GN=Mtl5 PE=2 SV=2
Length = 475
Score = 110 bits (275), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 64/81 (79%), Gaps = 4/81 (4%)
Query: 1 YCDCFANGEFCYQCNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRPKIGKCLVGEGERRH 60
YCDCF++G+FC C+CN N+ HE +R AI+ CL+RNP AF+PK+GK +G + RH
Sbjct: 278 YCDCFSSGDFCNSCSCN----NLRHELERFKAIKACLDRNPEAFQPKMGKGRLGAAKLRH 333
Query: 61 TKGCNCKRSGCLKNYCECYEA 81
+KGCNCKRSGCLKNYCECYEA
Sbjct: 334 SKGCNCKRSGCLKNYCECYEA 354
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 69/99 (69%), Gaps = 8/99 (8%)
Query: 88 PNGIRPRKPCNCTKSMCLKLYCDCFANGEFCYQCNCNSCFNNIEHEDDRHHAIRQCLERN 147
P+G + P T L YCDCF++G+FC C+CN N+ HE +R AI+ CL+RN
Sbjct: 262 PSGPALQGPPKIT----LSGYCDCFSSGDFCNSCSCN----NLRHELERFKAIKACLDRN 313
Query: 148 PNAFRPKIGKCLVGEGERRHTKGCNCKRSGCLKNYCECY 186
P AF+PK+GK +G + RH+KGCNCKRSGCLKNYCECY
Sbjct: 314 PEAFQPKMGKGRLGAAKLRHSKGCNCKRSGCLKNYCECY 352
>sp|Q9SZD1|TCX5_ARATH Protein tesmin/TSO1-like CXC 5 OS=Arabidopsis thaliana GN=TCX5 PE=1
SV=1
Length = 603
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 68/104 (65%), Gaps = 11/104 (10%)
Query: 94 RKPCNCTKSMCLKLYCDCFANGEFCYQCNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRP 153
+K CNC S CLKLYC+CFA+G +C CNC +CFNN+++E R A+ LERNP AFRP
Sbjct: 131 KKQCNCKHSRCLKLYCECFASGTYCDGCNCVNCFNNVDNEPARREAVEATLERNPFAFRP 190
Query: 154 KIGKCLVGEGERR-----------HTKGCNCKRSGCLKNYCECY 186
KI G ++R H KGC+CK+SGCLK YCEC+
Sbjct: 191 KIASSPHGGRDKREDIGEVVLLGKHNKGCHCKKSGCLKKYCECF 234
Score = 93.6 bits (231), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 60/92 (65%), Gaps = 11/92 (11%)
Query: 1 YCDCFANGEFCYQCNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRPKIGKCLVGEGERR- 59
YC+CFA+G +C CNC +CFNN+++E R A+ LERNP AFRPKI G ++R
Sbjct: 145 YCECFASGTYCDGCNCVNCFNNVDNEPARREAVEATLERNPFAFRPKIASSPHGGRDKRE 204
Query: 60 ----------HTKGCNCKRSGCLKNYCECYEA 81
H KGC+CK+SGCLK YCEC++A
Sbjct: 205 DIGEVVLLGKHNKGCHCKKSGCLKKYCECFQA 236
>sp|F4JY84|TCX7_ARATH Protein tesmin/TSO1-like CXC 7 OS=Arabidopsis thaliana GN=TCX7 PE=1
SV=1
Length = 459
Score = 100 bits (248), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 73/118 (61%), Gaps = 13/118 (11%)
Query: 80 EAGARTLEPNGIRPRKPCNCTKSMCLKLYCDCFANGEFCYQCNCNSCFNNIEHEDDRHHA 139
E ++ PN + +K CNC S CLKLYC+CFA+G +C CNC +C N +E+E R A
Sbjct: 82 EVESKENTPN--KQQKHCNCKNSKCLKLYCECFASGSYCNGCNCVNCHNKLENESSRQVA 139
Query: 140 IRQCLERNPNAFRPKIGKCLVGEGER-----------RHTKGCNCKRSGCLKNYCECY 186
I LERNP+AF+PKI G + +H+KGC+C++SGCLK YCECY
Sbjct: 140 ISGILERNPDAFKPKIAGSPHGMKDLQENVQQVLLIGKHSKGCHCRKSGCLKKYCECY 197
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 59/92 (64%), Gaps = 11/92 (11%)
Query: 1 YCDCFANGEFCYQCNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRPKIGKCLVGEGER-- 58
YC+CFA+G +C CNC +C N +E+E R AI LERNP+AF+PKI G +
Sbjct: 108 YCECFASGSYCNGCNCVNCHNKLENESSRQVAISGILERNPDAFKPKIAGSPHGMKDLQE 167
Query: 59 ---------RHTKGCNCKRSGCLKNYCECYEA 81
+H+KGC+C++SGCLK YCECY+A
Sbjct: 168 NVQQVLLIGKHSKGCHCRKSGCLKKYCECYQA 199
>sp|Q9Y4I5|MTL5_HUMAN Tesmin OS=Homo sapiens GN=MTL5 PE=1 SV=2
Length = 508
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 65/81 (80%)
Query: 1 YCDCFANGEFCYQCNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRPKIGKCLVGEGERRH 60
YCDCFA+G+FC CNCN+C NN+ H+ +R AI+ CL RNP AF+PKIGK +G + +H
Sbjct: 307 YCDCFASGDFCNNCNCNNCCNNLHHDIERFKAIKACLGRNPEAFQPKIGKGQLGNVKPQH 366
Query: 61 TKGCNCKRSGCLKNYCECYEA 81
KGCNC+RSGCLKNYCECYEA
Sbjct: 367 NKGCNCRRSGCLKNYCECYEA 387
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 65/84 (77%)
Query: 103 MCLKLYCDCFANGEFCYQCNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRPKIGKCLVGE 162
+ L YCDCFA+G+FC CNCN+C NN+ H+ +R AI+ CL RNP AF+PKIGK +G
Sbjct: 302 ITLAGYCDCFASGDFCNNCNCNNCCNNLHHDIERFKAIKACLGRNPEAFQPKIGKGQLGN 361
Query: 163 GERRHTKGCNCKRSGCLKNYCECY 186
+ +H KGCNC+RSGCLKNYCECY
Sbjct: 362 VKPQHNKGCNCRRSGCLKNYCECY 385
>sp|Q8L548|TCX3_ARATH Protein tesmin/TSO1-like CXC 3 OS=Arabidopsis thaliana GN=TCX3 PE=1
SV=1
Length = 609
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 61/102 (59%), Gaps = 12/102 (11%)
Query: 97 CNCTKSMCLKLYCDCFANGEFCYQ-CNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRPKI 155
CNC KS CLKLYC+CFA G +C + C+C +CFN H+D +Q RNP AF PK+
Sbjct: 330 CNCKKSKCLKLYCECFAAGFYCIEPCSCINCFNKPIHKDVVLATRKQIESRNPLAFAPKV 389
Query: 156 ---GKCLVGEGE--------RRHTKGCNCKRSGCLKNYCECY 186
++ GE RH +GCNCK+S CLK YCECY
Sbjct: 390 IRNSDSIIEVGEDASKTPASARHKRGCNCKKSNCLKKYCECY 431
Score = 73.2 bits (178), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 54/95 (56%), Gaps = 12/95 (12%)
Query: 1 YCDCFANGEFCYQ-CNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRPKI---GKCLVGEG 56
YC+CFA G +C + C+C +CFN H+D +Q RNP AF PK+ ++ G
Sbjct: 341 YCECFAAGFYCIEPCSCINCFNKPIHKDVVLATRKQIESRNPLAFAPKVIRNSDSIIEVG 400
Query: 57 E--------RRHTKGCNCKRSGCLKNYCECYEAGA 83
E RH +GCNCK+S CLK YCECY+ G
Sbjct: 401 EDASKTPASARHKRGCNCKKSNCLKKYCECYQGGV 435
>sp|Q9LUI3|TSO1_ARATH CRC domain-containing protein TSO1 OS=Arabidopsis thaliana GN=TSO1
PE=1 SV=1
Length = 695
Score = 80.5 bits (197), Expect = 5e-15, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 60/142 (42%), Gaps = 43/142 (30%)
Query: 56 GERRHTKGCNCKRSGCLKNYCECYEAGARTLEPNGIRPRKPCNCTKSMCLKLYCDCFANG 115
GE K CNCK+S CLK YCEC+ AG +EP
Sbjct: 395 GEGESCKRCNCKKSKCLKLYCECFAAGVYCIEP--------------------------- 427
Query: 116 EFCYQCNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRPKIGK-----------CLVGEGE 164
C+C CFN HE+ +Q RNP AF PK+ +
Sbjct: 428 -----CSCIDCFNKPIHEETVLATRKQIESRNPLAFAPKVIRNADSIMEASDDASKTPAS 482
Query: 165 RRHTKGCNCKRSGCLKNYCECY 186
RH +GCNCK+S C+K YCECY
Sbjct: 483 ARHKRGCNCKKSNCMKKYCECY 504
Score = 74.3 bits (181), Expect = 4e-13, Method: Composition-based stats.
Identities = 38/94 (40%), Positives = 50/94 (53%), Gaps = 12/94 (12%)
Query: 1 YCDCFANGEFCYQ-CNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRPKIGK--------- 50
YC+CFA G +C + C+C CFN HE+ +Q RNP AF PK+ +
Sbjct: 414 YCECFAAGVYCIEPCSCIDCFNKPIHEETVLATRKQIESRNPLAFAPKVIRNADSIMEAS 473
Query: 51 --CLVGEGERRHTKGCNCKRSGCLKNYCECYEAG 82
RH +GCNCK+S C+K YCECY+ G
Sbjct: 474 DDASKTPASARHKRGCNCKKSNCMKKYCECYQGG 507
>sp|F4JIF5|TCX2_ARATH Protein tesmin/TSO1-like CXC 2 OS=Arabidopsis thaliana GN=TCX2 PE=1
SV=1
Length = 674
Score = 80.1 bits (196), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 75/187 (40%), Gaps = 44/187 (23%)
Query: 11 CYQCNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRPKIGKCLVGEGERRHTKGCNCKRSG 70
Q + + N I + D+ + L+ N PK + + GE K CNCK+S
Sbjct: 325 TLQDSLDQTENEIREDADQDVPVEPALQEL-NLSSPKKKRVKLDSGEGESCKRCNCKKSK 383
Query: 71 CLKNYCECYEAGARTLEPNGIRPRKPCNCTKSMCLKLYCDCFANGEFCYQCNCNSCFNNI 130
CLK YCEC+ AG +EP C+C CFN
Sbjct: 384 CLKLYCECFAAGVYCIEP--------------------------------CSCIDCFNKP 411
Query: 131 EHEDDRHHAIRQCLERNPNAFRPKI-----------GKCLVGEGERRHTKGCNCKRSGCL 179
HED +Q RNP AF PK+ RH +GCNCK+S CL
Sbjct: 412 IHEDVVLATRKQIESRNPLAFAPKVIRNSDSVQETGDDASKTPASARHKRGCNCKKSNCL 471
Query: 180 KNYCECY 186
K YCECY
Sbjct: 472 KKYCECY 478
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 49/95 (51%), Gaps = 12/95 (12%)
Query: 1 YCDCFANGEFCYQ-CNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRPKI----------- 48
YC+CFA G +C + C+C CFN HED +Q RNP AF PK+
Sbjct: 388 YCECFAAGVYCIEPCSCIDCFNKPIHEDVVLATRKQIESRNPLAFAPKVIRNSDSVQETG 447
Query: 49 GKCLVGEGERRHTKGCNCKRSGCLKNYCECYEAGA 83
RH +GCNCK+S CLK YCECY+ G
Sbjct: 448 DDASKTPASARHKRGCNCKKSNCLKKYCECYQGGV 482
>sp|Q700D0|TCX8_ARATH Protein tesmin/TSO1-like CXC 8 OS=Arabidopsis thaliana GN=TCX8 PE=1
SV=1
Length = 368
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 62/117 (52%), Gaps = 11/117 (9%)
Query: 80 EAGARTLEPNGIRPRK--PCNCTKSMCLKLYCDCFANGEFCYQCNCNSCFNNIEHEDDRH 137
EA +T E GI RK C C +S CLKLYCDCFA+G C C+C C NN E D R
Sbjct: 50 EAKDKTDE-EGITSRKHKGCRCKQSKCLKLYCDCFASGVVCTDCDCVDCHNNSEKCDARE 108
Query: 138 HAIRQCLERNPNAFRPKIGKCLV--------GEGERRHTKGCNCKRSGCLKNYCECY 186
A+ L RNPNAF K L ++GC CKR+ CLK YCEC+
Sbjct: 109 AAMVNVLGRNPNAFSEKALGSLTDNQCKAAPDTKPGLLSRGCKCKRTRCLKKYCECF 165
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 1 YCDCFANGEFCYQCNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRPKIGKCLV------- 53
YCDCFA+G C C+C C NN E D R A+ L RNPNAF K L
Sbjct: 79 YCDCFASGVVCTDCDCVDCHNNSEKCDAREAAMVNVLGRNPNAFSEKALGSLTDNQCKAA 138
Query: 54 -GEGERRHTKGCNCKRSGCLKNYCECYEA 81
++GC CKR+ CLK YCEC++A
Sbjct: 139 PDTKPGLLSRGCKCKRTRCLKKYCECFQA 167
>sp|Q84JZ8|TCX4_ARATH Protein tesmin/TSO1-like CXC 4 OS=Arabidopsis thaliana GN=TCX4 PE=1
SV=1
Length = 639
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 59/104 (56%), Gaps = 12/104 (11%)
Query: 95 KPCNCTKSMCLKLYCDCFANGEFCYQ-CNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRP 153
K C C KS CLKLYC+CF+ G FC + C+C +CFN HED + RNP AF P
Sbjct: 453 KRCKCRKSQCLKLYCECFSAGLFCGEPCSCQNCFNKPIHEDLVMKSREVIKARNPLAFAP 512
Query: 154 KIGKC------LVGEGER-----RHTKGCNCKRSGCLKNYCECY 186
K+ L E + RH +GCNC++SGC K YCEC+
Sbjct: 513 KVVSTSDTVIDLWVENSKTPASARHKRGCNCRKSGCSKKYCECF 556
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 51/95 (53%), Gaps = 12/95 (12%)
Query: 1 YCDCFANGEFCYQ-CNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRPKIGKC------LV 53
YC+CF+ G FC + C+C +CFN HED + RNP AF PK+ L
Sbjct: 466 YCECFSAGLFCGEPCSCQNCFNKPIHEDLVMKSREVIKARNPLAFAPKVVSTSDTVIDLW 525
Query: 54 GEGER-----RHTKGCNCKRSGCLKNYCECYEAGA 83
E + RH +GCNC++SGC K YCEC+ G
Sbjct: 526 VENSKTPASARHKRGCNCRKSGCSKKYCECFMMGV 560
>sp|Q13751|LAMB3_HUMAN Laminin subunit beta-3 OS=Homo sapiens GN=LAMB3 PE=1 SV=1
Length = 1172
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 28/137 (20%)
Query: 58 RRHTKGCNCKRSGCLKNYCECYEAGARTLE--------PNGIRPRKPCNCTKSMCL---- 105
R HT+G NC+R C +Y GA E P+G P PC+ C+
Sbjct: 347 RDHTEGKNCER--CQLHYFRNRRPGASIQETCISCECDPDGAVPGAPCDPVTGQCVCKEH 404
Query: 106 --KLYCD---------CFANGEFCYQCNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRPK 154
CD +AN + C++C+CN + + D CL PN PK
Sbjct: 405 VQGERCDLCKPGFTGLTYANPQGCHRCDCNILGSRRDMPCDEESGRCLCL---PNVVGPK 461
Query: 155 IGKCLVGEGERRHTKGC 171
+C + +GC
Sbjct: 462 CDQCAPYHWKLASGQGC 478
>sp|Q0D2K0|NIPA4_HUMAN Magnesium transporter NIPA4 OS=Homo sapiens GN=NIPAL4 PE=1 SV=3
Length = 466
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 40 NPNAFRPKIGKCLVGEGERRHTKGCNCKRSGCLKNYCECYEAGARTLEPNGIRPRKPCNC 99
+P A RP++G C G E R +C+ L YC E + + N + P P N
Sbjct: 47 SPGAVRPRVGSCAPGPMELR-VSNTSCENGSLLHLYCSSQEVLCQIV--NDLSPEVPSNA 103
Query: 100 T 100
T
Sbjct: 104 T 104
>sp|Q9LHZ7|CSLD2_ORYSJ Cellulose synthase-like protein D2 OS=Oryza sativa subsp. japonica
GN=CSLD2 PE=2 SV=1
Length = 1170
Score = 31.2 bits (69), Expect = 4.4, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 53 VGEGERRHTKGCNCKRSGCLKNYCECYEAGARTLEPNGIRPRKPCNCTKSMCLKLYCDCF 112
V E E H + K S C N C+ A+ + PC C +C + D
Sbjct: 128 VIESEASHPQMAGAKGSSCAINGCD-----AKVMSDERGDDILPCECDFKICADCFADAV 182
Query: 113 ANGEFCYQC 121
NG C C
Sbjct: 183 KNGGACPGC 191
>sp|A2YU42|CSLD2_ORYSI Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica
GN=CSLD2 PE=3 SV=1
Length = 1170
Score = 31.2 bits (69), Expect = 4.4, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 53 VGEGERRHTKGCNCKRSGCLKNYCECYEAGARTLEPNGIRPRKPCNCTKSMCLKLYCDCF 112
V E E H + K S C N C+ A+ + PC C +C + D
Sbjct: 128 VIESEASHPQMAGAKGSSCAINGCD-----AKVMSDERGDDILPCECDFKICADCFADAV 182
Query: 113 ANGEFCYQC 121
NG C C
Sbjct: 183 KNGGACPGC 191
>sp|Q2QI47|USH2A_MOUSE Usherin OS=Mus musculus GN=Ush2A PE=1 SV=2
Length = 5193
Score = 30.4 bits (67), Expect = 6.2, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 64 CNCKRSGCLKNYCECYEA--GARTLEPNGIRPRKPCNCTKSMCLKLYCDCFANGEFCYQC 121
C+CKR + +C + + L+P+G RP CNC S + C N QC
Sbjct: 659 CDCKRRVSGRQCLQCQDGFYDLQALDPDGCRP---CNCNPSGTVDGDITCHQNSG---QC 712
Query: 122 NCNS 125
+C +
Sbjct: 713 SCKA 716
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.142 0.516
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,707,512
Number of Sequences: 539616
Number of extensions: 3359782
Number of successful extensions: 9737
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 9417
Number of HSP's gapped (non-prelim): 328
length of query: 186
length of database: 191,569,459
effective HSP length: 111
effective length of query: 75
effective length of database: 131,672,083
effective search space: 9875406225
effective search space used: 9875406225
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)