Query psy17547
Match_columns 186
No_of_seqs 203 out of 448
Neff 5.0
Searched_HMMs 46136
Date Sat Aug 17 01:19:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17547.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17547hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1171|consensus 100.0 2.5E-32 5.5E-37 248.2 4.5 100 1-133 145-257 (406)
2 KOG1171|consensus 100.0 8.8E-32 1.9E-36 244.7 2.1 94 93-186 130-235 (406)
3 PF03638 TCR: Tesmin/TSO1-like 99.5 3.4E-15 7.4E-20 97.5 2.4 40 93-132 2-42 (42)
4 PF03638 TCR: Tesmin/TSO1-like 98.6 9.9E-09 2.1E-13 67.1 1.4 26 60-85 2-27 (42)
5 TIGR03505 FimV_core FimV N-ter 39.3 17 0.00037 26.1 1.2 18 29-46 18-35 (74)
6 KOG1079|consensus 31.9 21 0.00045 35.9 0.9 40 108-186 515-556 (739)
7 KOG1079|consensus 30.7 35 0.00077 34.3 2.2 63 59-128 505-572 (739)
8 PF07006 DUF1310: Protein of u 30.3 33 0.00071 27.1 1.6 22 26-47 38-60 (122)
9 KOG0119|consensus 23.9 67 0.0015 31.3 2.7 18 25-42 108-125 (554)
10 KOG2364|consensus 16.6 1.2E+02 0.0027 28.6 2.7 29 23-51 129-157 (433)
No 1
>KOG1171|consensus
Probab=99.97 E-value=2.5e-32 Score=248.19 Aligned_cols=100 Identities=58% Similarity=1.246 Sum_probs=86.5
Q ss_pred CcccccCCCCCCC-CCCCCCCCCccCHHHHHHHHHHHHHhCCCCcccccccccCC-----------CCcccccccccccC
Q psy17547 1 YCDCFANGEFCYQ-CNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRPKIGKCLVG-----------EGERRHTKGCNCKR 68 (186)
Q Consensus 1 YCeCFa~g~~C~~-CnC~~C~N~~~~~~~R~~Ai~~~l~rNP~AF~pki~~~~~~-----------~~~~~h~kGCnCKK 68 (186)
||||||+|.||.+ |||.+|+|+++|+++|.+||++||+|||+||+|||+.+..+ ...++|.+||+|||
T Consensus 145 YCeCFAsG~yC~~~CnCvnC~N~~~~e~~r~~a~k~~l~RNP~AFkPKia~s~~~~~da~~~~~~~~~sa~hkkGC~Ckk 224 (406)
T KOG1171|consen 145 YCECFASGVYCTGPCNCVNCFNNPEHESVRLKARKQILERNPNAFKPKIAASSSGIADASEEASKTPASARHKKGCNCKK 224 (406)
T ss_pred hHHHHhhcccccCCcceeeccCCCcchHHHHHHHHHHhhcCccccccccccCCcccchhhhhhhccchhhhhcCCCCCcc
Confidence 9999999999995 99999999999999999999999999999999999864211 22358899999999
Q ss_pred CCccccchhhhhccccccCCCCCCCCCCccCCCccccccccccccCCCCCC-CCCCCCCCCCccch
Q psy17547 69 SGCLKNYCECYEAGARTLEPNGIRPRKPCNCTKSMCLKLYCDCFANGEFCY-QCNCNSCFNNIEHE 133 (186)
Q Consensus 69 S~ClKkYCeCfq~g~~~~~~~~~~~~~~C~C~ks~Clk~YC~Cf~~g~~C~-~C~C~~C~N~~~~~ 133 (186)
|+||||||||||+|+ .|+ +|+|++|+|+..+.
T Consensus 225 SgClKkYCECyQa~v---------------------------------lCS~nCkC~~CkN~~g~~ 257 (406)
T KOG1171|consen 225 SGCLKKYCECYQAGV---------------------------------LCSSNCKCQGCKNNFGYK 257 (406)
T ss_pred ccchHHHHHHHhcCC---------------------------------CccccccCcCCccchhhc
Confidence 998888888888776 577 99999999955543
No 2
>KOG1171|consensus
Probab=99.97 E-value=8.8e-32 Score=244.66 Aligned_cols=94 Identities=64% Similarity=1.315 Sum_probs=85.7
Q ss_pred CCCCccCCCccccccccccccCCCCCC-CCCCCCCCCCccchhhhHHHHHHHHhhCCCccccccccccCC----------
Q psy17547 93 PRKPCNCTKSMCLKLYCDCFANGEFCY-QCNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRPKIGKCLVG---------- 161 (186)
Q Consensus 93 ~~~~C~C~ks~Clk~YC~Cf~~g~~C~-~C~C~~C~N~~~~~~~r~~ai~~il~RNP~AF~pk~~~~~~~---------- 161 (186)
+.+.|+|++|+|||+||||||+|.||+ .|+|+||+|+++|+.+|++||+.||+|||+||.|||..+..+
T Consensus 130 ~k~~~~ck~SkclklYCeCFAsG~yC~~~CnCvnC~N~~~~e~~r~~a~k~~l~RNP~AFkPKia~s~~~~~da~~~~~~ 209 (406)
T KOG1171|consen 130 SKKKCNCKKSKCLKLYCECFASGVYCTGPCNCVNCFNNPEHESVRLKARKQILERNPNAFKPKIAASSSGIADASEEASK 209 (406)
T ss_pred CccCCCchHHHHHHHhHHHHhhcccccCCcceeeccCCCcchHHHHHHHHHHhhcCccccccccccCCcccchhhhhhhc
Confidence 466889999999999999999999999 599999999999999999999999999999999999854422
Q ss_pred -CCCCccCCCccccCCCccccccccC
Q psy17547 162 -EGERRHTKGCNCKRSGCLKNYCECY 186 (186)
Q Consensus 162 -~~~~~~~~GC~CkkS~ClKkYCeCf 186 (186)
..+.+|.+||+||||+|||||||||
T Consensus 210 ~~~sa~hkkGC~CkkSgClKkYCECy 235 (406)
T KOG1171|consen 210 TPASARHKKGCNCKKSGCLKKYCECY 235 (406)
T ss_pred cchhhhhcCCCCCccccchHHHHHHH
Confidence 1345799999999999999999998
No 3
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=99.53 E-value=3.4e-15 Score=97.50 Aligned_cols=40 Identities=55% Similarity=1.344 Sum_probs=37.2
Q ss_pred CCCCccCCCccccccccccccCCCCCC-CCCCCCCCCCccc
Q psy17547 93 PRKPCNCTKSMCLKLYCDCFANGEFCY-QCNCNSCFNNIEH 132 (186)
Q Consensus 93 ~~~~C~C~ks~Clk~YC~Cf~~g~~C~-~C~C~~C~N~~~~ 132 (186)
..++|+|+||+|||+|||||++|++|+ .|+|.+|.|+.+|
T Consensus 2 ~~~gC~Ckks~Clk~YC~Cf~~g~~C~~~C~C~~C~N~~~~ 42 (42)
T PF03638_consen 2 KKKGCNCKKSKCLKLYCECFQAGRFCTPNCKCQNCKNTEEN 42 (42)
T ss_pred CCCCCcccCcChhhhhCHHHHCcCcCCCCcccCCCCCcCCC
Confidence 457999999999999999999999999 8999999999875
No 4
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=98.64 E-value=9.9e-09 Score=67.14 Aligned_cols=26 Identities=62% Similarity=1.356 Sum_probs=24.5
Q ss_pred ccccccccCCCccccchhhhhccccc
Q psy17547 60 HTKGCNCKRSGCLKNYCECYEAGART 85 (186)
Q Consensus 60 h~kGCnCKKS~ClKkYCeCfq~g~~~ 85 (186)
+.+||+|+||+|||+|||||++|+.+
T Consensus 2 ~~~gC~Ckks~Clk~YC~Cf~~g~~C 27 (42)
T PF03638_consen 2 KKKGCNCKKSKCLKLYCECFQAGRFC 27 (42)
T ss_pred CCCCCcccCcChhhhhCHHHHCcCcC
Confidence 67899999999999999999999876
No 5
>TIGR03505 FimV_core FimV N-terminal domain. This region is found at, or about 200 amino acids from, the N-terminus of FimV from Pseudomonas aeruginosa, TspA of Neisseria meningitidis, and related proteins. Disruption of FimV blocks twitching motility from type IV pili; Semmler, et al. suggest a role for this family in peptidoglycan layer remodelling required by type IV fimbrial systems. Most but not all members of this protein family have a C-terminal region recognized by TIGR03504. In between is a highly variable, often repeat-filled region rich in the negatively charged amino acids Asp and Glu.
Probab=39.30 E-value=17 Score=26.13 Aligned_cols=18 Identities=22% Similarity=0.251 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhCCCCccc
Q psy17547 29 RHHAIRQCLERNPNAFRP 46 (186)
Q Consensus 29 R~~Ai~~~l~rNP~AF~p 46 (186)
..++|..|...||+||.-
T Consensus 18 ~~q~m~ai~~aNp~AF~~ 35 (74)
T TIGR03505 18 LYQMMLALYRANPDAFIG 35 (74)
T ss_pred HHHHHHHHHHHCHHhHhc
Confidence 567788899999999953
No 6
>KOG1079|consensus
Probab=31.87 E-value=21 Score=35.88 Aligned_cols=40 Identities=40% Similarity=1.178 Sum_probs=32.7
Q ss_pred ccccccCCCCCC-CCCCC-CCCCCccchhhhHHHHHHHHhhCCCccccccccccCCCCCCccCCCccccCCCcccccccc
Q psy17547 108 YCDCFANGEFCY-QCNCN-SCFNNIEHEDDRHHAIRQCLERNPNAFRPKIGKCLVGEGERRHTKGCNCKRSGCLKNYCEC 185 (186)
Q Consensus 108 YC~Cf~~g~~C~-~C~C~-~C~N~~~~~~~r~~ai~~il~RNP~AF~pk~~~~~~~~~~~~~~~GC~CkkS~ClKkYCeC 185 (186)
-|.|-..+.+|. .|.|. +|+|.. .||+| |+.|.-|-|-|
T Consensus 515 ~C~C~~n~~~CEk~C~C~~dC~nrF--------------------------------------~GC~C-k~QC~tkqCpC 555 (739)
T KOG1079|consen 515 GCPCIDNETFCEKFCYCSPDCRNRF--------------------------------------PGCRC-KAQCNTKQCPC 555 (739)
T ss_pred CCcccccCcchhhcccCCHHHHhcC--------------------------------------CCCCc-ccccccCcCch
Confidence 478888888898 89998 776643 39999 99999998888
Q ss_pred C
Q psy17547 186 Y 186 (186)
Q Consensus 186 f 186 (186)
|
T Consensus 556 ~ 556 (739)
T KOG1079|consen 556 Y 556 (739)
T ss_pred h
Confidence 6
No 7
>KOG1079|consensus
Probab=30.66 E-value=35 Score=34.30 Aligned_cols=63 Identities=25% Similarity=0.523 Sum_probs=40.5
Q ss_pred cccccccccCCCccccchhhhhccccccCCCC-----CCCCCCccCCCccccccccccccCCCCCCCCCCCCCCC
Q psy17547 59 RHTKGCNCKRSGCLKNYCECYEAGARTLEPNG-----IRPRKPCNCTKSMCLKLYCDCFANGEFCYQCNCNSCFN 128 (186)
Q Consensus 59 ~h~kGCnCKKS~ClKkYCeCfq~g~~~~~~~~-----~~~~~~C~C~ks~Clk~YC~Cf~~g~~C~~C~C~~C~N 128 (186)
.|..+|||-.. |.|-..+.-+...-. ..-..||.| ++.|.-.-|.||++..-|.---|+.|.|
T Consensus 505 ~hp~~c~c~~~------C~C~~n~~~CEk~C~C~~dC~nrF~GC~C-k~QC~tkqCpC~~A~rECdPd~Cl~cg~ 572 (739)
T KOG1079|consen 505 DHPGPCNCGVG------CPCIDNETFCEKFCYCSPDCRNRFPGCRC-KAQCNTKQCPCYLAVRECDPDVCLMCGN 572 (739)
T ss_pred cCCCCCCCCCC------CcccccCcchhhcccCCHHHHhcCCCCCc-ccccccCcCchhhhccccCchHHhccCc
Confidence 56667764432 555555543322111 112469999 9999999999999999998444445544
No 8
>PF07006 DUF1310: Protein of unknown function (DUF1310); InterPro: IPR010738 This family consists of several hypothetical proteins of around 125 residues in length. Members of this family seem to be specific to Listeria and Streptococcus species. The function of this family is unknown.
Probab=30.32 E-value=33 Score=27.06 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHH-HhCCCCcccc
Q psy17547 26 EDDRHHAIRQCL-ERNPNAFRPK 47 (186)
Q Consensus 26 ~~~R~~Ai~~~l-~rNP~AF~pk 47 (186)
.+|..++++..| ..+|.||.|+
T Consensus 38 S~E~k~~~E~~Lk~lD~~AlT~~ 60 (122)
T PF07006_consen 38 SEEAKKVIEKDLKNLDPKALTEE 60 (122)
T ss_pred CHHHHHHHHHHHHHhChhhhccC
Confidence 355668888665 7999999986
No 9
>KOG0119|consensus
Probab=23.94 E-value=67 Score=31.35 Aligned_cols=18 Identities=44% Similarity=0.726 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHHhCCC
Q psy17547 25 HEDDRHHAIRQCLERNPN 42 (186)
Q Consensus 25 ~~~~R~~Ai~~~l~rNP~ 42 (186)
-|+||.++|+.||+.||.
T Consensus 108 Le~er~e~I~~~lk~nP~ 125 (554)
T KOG0119|consen 108 LEDERHEIIEEILKLNPG 125 (554)
T ss_pred HHHHHHHHHHHHHHhCcC
Confidence 368999999999999984
No 10
>KOG2364|consensus
Probab=16.58 E-value=1.2e+02 Score=28.65 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=25.1
Q ss_pred ccCHHHHHHHHHHHHHhCCCCcccccccc
Q psy17547 23 IEHEDDRHHAIRQCLERNPNAFRPKIGKC 51 (186)
Q Consensus 23 ~~~~~~R~~Ai~~~l~rNP~AF~pki~~~ 51 (186)
..|+++..++++.+..++|++|.++-..+
T Consensus 129 f~hee~~~edv~fLv~~~p~~F~~~k~~q 157 (433)
T KOG2364|consen 129 FMHEEQIFEDVKFLVVRHPGEFHENKVYQ 157 (433)
T ss_pred ecChhhhhHHHHHHHHhCccccCccccce
Confidence 46888889999999999999999987654
Done!