Query psy17547
Match_columns 186
No_of_seqs 203 out of 448
Neff 5.0
Searched_HMMs 29240
Date Sat Aug 17 01:19:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17547.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17547hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lua_A Protein MALE-specific l 94.7 0.024 8.2E-07 37.7 3.1 29 103-131 20-48 (52)
2 2lua_A Protein MALE-specific l 81.4 0.46 1.6E-05 31.5 0.9 23 2-24 26-48 (52)
3 4fxw_B Splicing factor 1; UHM, 42.4 11 0.00038 28.8 1.8 21 26-47 98-118 (124)
4 4fxw_B Splicing factor 1; UHM, 29.1 25 0.00086 26.8 1.9 22 133-155 98-119 (124)
5 3bo5_A Histone-lysine N-methyl 22.2 1.1E+02 0.0039 25.6 4.9 23 61-83 59-81 (290)
6 4a8u_A Major pollen allergen B 14.4 81 0.0028 24.0 2.0 17 135-151 142-158 (159)
7 3ie5_A Phenolic oxidative coup 13.4 91 0.0031 24.1 2.0 16 136-151 149-164 (165)
8 3rws_A MTN13 protein; zeatin, 12.3 99 0.0034 23.9 2.0 17 136-152 149-165 (168)
9 1tw0_A Pathogenesis-related cl 12.2 86 0.0029 23.5 1.6 16 136-151 142-157 (157)
10 1e09_A PRU AV 1; allergen, maj 11.9 1.1E+02 0.0037 22.9 2.1 16 136-151 143-158 (159)
No 1
>2lua_A Protein MALE-specific lethal-2; DNA binding protein, metal binding; NMR {Drosophila melanogaster}
Probab=94.68 E-value=0.024 Score=37.75 Aligned_cols=29 Identities=28% Similarity=0.786 Sum_probs=25.3
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCcc
Q psy17547 103 MCLKLYCDCFANGEFCYQCNCNSCFNNIE 131 (186)
Q Consensus 103 ~Clk~YC~Cf~~g~~C~~C~C~~C~N~~~ 131 (186)
.|--.-|.||.+|.-|.+|+|.+|+|...
T Consensus 20 TC~~~RCpCY~~~~sC~~C~C~GCkNPhk 48 (52)
T 2lua_A 20 TCRNSRCPCYKSYNSCAGCHCVGCKNPHK 48 (52)
T ss_dssp TTTSTTCHHHHTTCCCSSCCCSSCCCSCC
T ss_pred eEcCCccceecCCCccCCCEecCcCCCCc
Confidence 46667789999999999999999999753
No 2
>2lua_A Protein MALE-specific lethal-2; DNA binding protein, metal binding; NMR {Drosophila melanogaster}
Probab=81.41 E-value=0.46 Score=31.53 Aligned_cols=23 Identities=30% Similarity=0.909 Sum_probs=20.6
Q ss_pred cccccCCCCCCCCCCCCCCCCcc
Q psy17547 2 CDCFANGEFCYQCNCNSCFNNIE 24 (186)
Q Consensus 2 CeCFa~g~~C~~CnC~~C~N~~~ 24 (186)
|-||-+|.-|.+|.|.+|+|...
T Consensus 26 CpCY~~~~sC~~C~C~GCkNPhk 48 (52)
T 2lua_A 26 CPCYKSYNSCAGCHCVGCKNPHK 48 (52)
T ss_dssp CHHHHTTCCCSSCCCSSCCCSCC
T ss_pred cceecCCCccCCCEecCcCCCCc
Confidence 77999999999999999999753
No 3
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=42.43 E-value=11 Score=28.82 Aligned_cols=21 Identities=38% Similarity=0.860 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhCCCCcccc
Q psy17547 26 EDDRHHAIRQCLERNPNAFRPK 47 (186)
Q Consensus 26 ~~~R~~Ai~~~l~rNP~AF~pk 47 (186)
|+||.+.|+.++..||+ |+|-
T Consensus 98 E~ER~~lIe~~~k~~P~-fkpP 118 (124)
T 4fxw_B 98 EEERHNLITEMVALNPD-FKPP 118 (124)
T ss_dssp HHHHHHHHHHGGGTCSS-CCCC
T ss_pred HHHHHHHHHHHHHHCcC-CCCC
Confidence 68999999999999997 7764
No 4
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=29.06 E-value=25 Score=26.83 Aligned_cols=22 Identities=36% Similarity=0.809 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHhhCCCcccccc
Q psy17547 133 EDDRHHAIRQCLERNPNAFRPKI 155 (186)
Q Consensus 133 ~~~r~~ai~~il~RNP~AF~pk~ 155 (186)
+.||.+.|+.++..||. |.|-.
T Consensus 98 E~ER~~lIe~~~k~~P~-fkpP~ 119 (124)
T 4fxw_B 98 EEERHNLITEMVALNPD-FKPPA 119 (124)
T ss_dssp HHHHHHHHHHGGGTCSS-CCCCC
T ss_pred HHHHHHHHHHHHHHCcC-CCCCC
Confidence 68999999999999997 77653
No 5
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}
Probab=22.25 E-value=1.1e+02 Score=25.62 Aligned_cols=23 Identities=35% Similarity=0.980 Sum_probs=17.9
Q ss_pred cccccccCCCccccchhhhhccc
Q psy17547 61 TKGCNCKRSGCLKNYCECYEAGA 83 (186)
Q Consensus 61 ~kGCnCKKS~ClKkYCeCfq~g~ 83 (186)
..||.|....|....|.|++.+.
T Consensus 59 ~~gC~C~~~~C~~~~C~C~~~~~ 81 (290)
T 3bo5_A 59 FPGCICVKTPCLPGTCSCLRHGE 81 (290)
T ss_dssp CCCCCCCSSCCCTTTCGGGTTSC
T ss_pred CCCCCCCCCCcCCCCCcchhhcC
Confidence 36888888788888888887653
No 6
>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A
Probab=14.45 E-value=81 Score=23.96 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=14.1
Q ss_pred hhHHHHHHHHhhCCCcc
Q psy17547 135 DRHHAIRQCLERNPNAF 151 (186)
Q Consensus 135 ~r~~ai~~il~RNP~AF 151 (186)
.-.++|+..|..||+||
T Consensus 142 ~~~k~ie~yll~np~~~ 158 (159)
T 4a8u_A 142 TLLRAVESYLLAHSDAY 158 (159)
T ss_dssp HHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHhhChhhh
Confidence 34778889999999987
No 7
>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} SCOP: d.129.3.0
Probab=13.36 E-value=91 Score=24.07 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=13.8
Q ss_pred hHHHHHHHHhhCCCcc
Q psy17547 136 RHHAIRQCLERNPNAF 151 (186)
Q Consensus 136 r~~ai~~il~RNP~AF 151 (186)
-.++|+..|..||+|+
T Consensus 149 ~~K~ie~yllanp~~~ 164 (165)
T 3ie5_A 149 FYKQVEEYLAANPEVF 164 (165)
T ss_dssp HHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHhChhhh
Confidence 4788889999999987
No 8
>3rws_A MTN13 protein; zeatin, cytokinin, hormone, lucerne, nodulin, NODU plant protein; HET: ZEA; 1.85A {Medicago truncatula}
Probab=12.28 E-value=99 Score=23.90 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=13.1
Q ss_pred hHHHHHHHHhhCCCccc
Q psy17547 136 RHHAIRQCLERNPNAFR 152 (186)
Q Consensus 136 r~~ai~~il~RNP~AF~ 152 (186)
-.++|+..|..||+|+.
T Consensus 149 ~~k~ie~yllanp~~~~ 165 (168)
T 3rws_A 149 FTKAVESFLLANPDYNK 165 (168)
T ss_dssp HHHHHHHHHHHCTTC--
T ss_pred HHHHHHHHHHhChHhhc
Confidence 37788899999999985
No 9
>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A*
Probab=12.23 E-value=86 Score=23.52 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=12.8
Q ss_pred hHHHHHHHHhhCCCcc
Q psy17547 136 RHHAIRQCLERNPNAF 151 (186)
Q Consensus 136 r~~ai~~il~RNP~AF 151 (186)
-.+||+..|..||+|+
T Consensus 142 ~~k~ie~yll~~p~~~ 157 (157)
T 1tw0_A 142 FFKAIEGYVLANPAEY 157 (157)
T ss_dssp HHHHHHHHHHHCGGGC
T ss_pred HHHHHHHHHHhCcccC
Confidence 3678888889999885
No 10
>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A
Probab=11.91 E-value=1.1e+02 Score=22.93 Aligned_cols=16 Identities=25% Similarity=0.495 Sum_probs=13.0
Q ss_pred hHHHHHHHHhhCCCcc
Q psy17547 136 RHHAIRQCLERNPNAF 151 (186)
Q Consensus 136 r~~ai~~il~RNP~AF 151 (186)
-.+||+..|..||+||
T Consensus 143 ~~k~ie~yll~~~~~~ 158 (159)
T 1e09_A 143 LFKLIETYLKGHPDAY 158 (159)
T ss_dssp HHHHHHHHHHHCTTSC
T ss_pred HHHHHHHHHHhChhhc
Confidence 3677888889999986
Done!