RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17547
(186 letters)
>gnl|CDD|202712 pfam03638, CXC, Tesmin/TSO1-like CXC domain. This family includes
proteins that have two copies of a cysteine rich motif
as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The
family includes Tesmin and TSO1. This family is called a
CXC domain in.
Length = 42
Score = 45.3 bits (108), Expect = 2e-07
Identities = 22/42 (52%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 92 RPRKPCNCTKSMCLKLYCDCFANGEFC-YQCNCNSCFNNIEH 132
R +K CNC KS CLK YC+CFA G++C C C C N E+
Sbjct: 1 RHKKGCNCKKSKCLKKYCECFAAGKYCSSLCKCEGCKNKEEN 42
Score = 33.4 bits (77), Expect = 0.004
Identities = 16/21 (76%), Positives = 18/21 (85%)
Query: 166 RHTKGCNCKRSGCLKNYCECY 186
RH KGCNCK+S CLK YCEC+
Sbjct: 1 RHKKGCNCKKSKCLKKYCECF 21
Score = 27.2 bits (61), Expect = 0.84
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 1 YCDCFANGEFC-YQCNCNSCFNNIEH 25
YC+CFA G++C C C C N E+
Sbjct: 17 YCECFAAGKYCSSLCKCEGCKNKEEN 42
>gnl|CDD|173767 cd08227, PK_STRAD_alpha, Pseudokinase domain of STE20-related
kinase adapter protein alpha. Protein Kinase family,
STE20-related kinase adapter protein (STRAD) alpha
subfamily, pseudokinase domain. The STRAD alpha
subfamily is part of a larger superfamily that includes
the catalytic domains of serine/threonine kinases
(STKs), protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The pseudokinase domain shows
similarity to protein kinases but lacks crucial residues
for catalytic activity. STRAD forms a complex with the
scaffolding protein MO25, and the STK, LKB1, resulting
in the activation of the kinase. In the complex, LKB1
phosphorylates and activates adenosine
monophosphate-activated protein kinases (AMPKs), which
regulate cell energy metabolism and cell polarity. LKB1
is a tumor suppressor linked to the rare inherited
disease, Peutz-Jeghers syndrome, which is characterized
by a predisposition to benign polyps and
hyperpigmentation of the buccal mucosa. There are two
forms of STRAD, alpha and beta, that complex with LKB1
and MO25. The structure of STRAD-alpha is available and
shows that this protein binds ATP, has an ordered
activation loop, and adopts a closed conformation
typical of fully active protein kinases. It does not
possess activity due to nonconservative substitutions of
essential catalytic residues. ATP binding enhances the
affinity of STRAD for MO25. The conformation of
STRAD-alpha, stabilized through ATP and MO25, may be
needed to activate LKB1. A mutation which results in a
truncation of a C-terminal part of the human STRAD-alpha
pseudokinase domain and disrupts its association with
LKB1, leads to PMSE (polyhydramnios, megalencephaly,
symptomatic epilepsy) syndrome. Several splice variants
of STRAD-alpha exist which exhibit different effects on
the localization and activation of LKB1.
Length = 327
Score = 29.1 bits (65), Expect = 1.4
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 30 HHAIRQCLERNPNAFRPKIGKCL 52
HH + QCL+RNP+ RP L
Sbjct: 284 HHFVEQCLQRNPD-ARPSASTLL 305
Score = 29.1 bits (65), Expect = 1.4
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 137 HHAIRQCLERNPNAFRPKIGKCL 159
HH + QCL+RNP+ RP L
Sbjct: 284 HHFVEQCLQRNPD-ARPSASTLL 305
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 27.9 bits (63), Expect = 3.2
Identities = 13/42 (30%), Positives = 15/42 (35%), Gaps = 10/42 (23%)
Query: 8 GEFC-YQCNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRPKI 48
GE C Y N DR H +R + N RP I
Sbjct: 296 GELCRYLLNQP------PKPTDRDHRLRLMIG---NGLRPDI 328
Score = 27.9 bits (63), Expect = 3.2
Identities = 13/42 (30%), Positives = 15/42 (35%), Gaps = 10/42 (23%)
Query: 115 GEFC-YQCNCNSCFNNIEHEDDRHHAIRQCLERNPNAFRPKI 155
GE C Y N DR H +R + N RP I
Sbjct: 296 GELCRYLLNQP------PKPTDRDHRLRLMIG---NGLRPDI 328
>gnl|CDD|181592 PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed.
Length = 387
Score = 27.6 bits (62), Expect = 3.7
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 17 NSCFNNIEHEDDRHHAIRQCLERNPN 42
F N+ ED H +R L RNP
Sbjct: 19 GGAFRNVRAEDLSAHLMRSLLARNPA 44
Score = 27.6 bits (62), Expect = 3.7
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 124 NSCFNNIEHEDDRHHAIRQCLERNPN 149
F N+ ED H +R L RNP
Sbjct: 19 GGAFRNVRAEDLSAHLMRSLLARNPA 44
>gnl|CDD|215138 PLN02248, PLN02248, cellulose synthase-like protein.
Length = 1135
Score = 27.3 bits (61), Expect = 6.7
Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 10/61 (16%)
Query: 61 TKGCNCKRSGCLKNYCECYEAGARTLEPNGIRPRKPCNCTKSMCLKLYCDCFANGEFCYQ 120
KG +C GC + + PC C +C Y D +G C
Sbjct: 122 AKGSSCAMPGC----------DGKVMRDERGEDLLPCECGFKICRDCYIDAVKSGGICPG 171
Query: 121 C 121
C
Sbjct: 172 C 172
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.142 0.516
Gapped
Lambda K H
0.267 0.0785 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,613,577
Number of extensions: 729508
Number of successful extensions: 917
Number of sequences better than 10.0: 1
Number of HSP's gapped: 915
Number of HSP's successfully gapped: 25
Length of query: 186
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 95
Effective length of database: 6,901,388
Effective search space: 655631860
Effective search space used: 655631860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.2 bits)