RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17547
         (186 letters)



>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2,
           protein structure initiative, joint center structural
           genomics, JCSG; 2.46A {Thermotoga maritima} SCOP:
           a.4.5.63 c.55.1.10 c.55.1.10
          Length = 380

 Score = 28.4 bits (64), Expect = 1.5
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 56  GERRHTKGCNCKRSGCLKNYC 76
           GE  +T+  N      L++ C
Sbjct: 243 GEIGYTRVFNGNEYVFLEDVC 263



 Score = 28.4 bits (64), Expect = 1.5
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 163 GERRHTKGCNCKRSGCLKNYC 183
           GE  +T+  N      L++ C
Sbjct: 243 GEIGYTRVFNGNEYVFLEDVC 263


>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati
           regulator, DNA damage, DNA repair, DNA-binding, nucleus,
           ST genomics; HET: SAH; 1.59A {Homo sapiens}
          Length = 290

 Score = 26.0 bits (57), Expect = 7.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 97  CNCTKSMCLKLYCDCFANGEFCYQCNC 123
           C C K+ CL   C C  +GE     +C
Sbjct: 62  CICVKTPCLPGTCSCLRHGENYDDNSC 88


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.142    0.516 

Gapped
Lambda     K      H
   0.267   0.0564    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,925,077
Number of extensions: 174661
Number of successful extensions: 1087
Number of sequences better than 10.0: 1
Number of HSP's gapped: 875
Number of HSP's successfully gapped: 199
Length of query: 186
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 98
Effective length of database: 4,244,745
Effective search space: 415985010
Effective search space used: 415985010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.9 bits)