RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17547
         (186 letters)



>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS)
           {Thermus thermophilus, AspRS-2 [TaxId: 274]}
          Length = 304

 Score = 27.0 bits (59), Expect = 1.2
 Identities = 9/66 (13%), Positives = 17/66 (25%), Gaps = 5/66 (7%)

Query: 80  EAGARTLEPNGIRPRKPCNCTKSMCLKLYCDCFANGEFCYQCNCNSCFNNIEHEDDRHHA 139
           E G+     +    R     +  +  ++    F              +   EH   RH  
Sbjct: 48  EGGSGLFGVDYFEKRAYLAQSPQLYKQIMVGVF-----ERVYEVAPVWRMEEHHTSRHLN 102

Query: 140 IRQCLE 145
               L+
Sbjct: 103 EYLSLD 108



 Score = 25.1 bits (54), Expect = 6.5
 Identities = 7/32 (21%), Positives = 9/32 (28%)

Query: 7   NGEFCYQCNCNSCFNNIEHEDDRHHAIRQCLE 38
            G F         +   EH   RH      L+
Sbjct: 77  VGVFERVYEVAPVWRMEEHHTSRHLNEYLSLD 108


>d1wdkc1 c.95.1.1 (C:2-263) Fatty oxidation complex beta subunit
           (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId:
           296]}
          Length = 262

 Score = 24.9 bits (53), Expect = 6.3
 Identities = 15/109 (13%), Positives = 26/109 (23%)

Query: 31  HAIRQCLERNPNAFRPKIGKCLVGEGERRHTKGCNCKRSGCLKNYCECYEAGARTLEPNG 90
           H I + LERN      ++   + G   +   +G N  R   L        A        G
Sbjct: 36  HLISKVLERNSKVDPGEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCG 95

Query: 91  IRPRKPCNCTKSMCLKLYCDCFANGEFCYQCNCNSCFNNIEHEDDRHHA 139
                     +++           G             +       + A
Sbjct: 96  SSMSALHTAAQAIMTGNGDVFVVGGVEHMGHVSMMHGVDPNPHMSLYAA 144


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.142    0.516 

Gapped
Lambda     K      H
   0.267   0.0589    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 770,216
Number of extensions: 40589
Number of successful extensions: 407
Number of sequences better than 10.0: 1
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 94
Length of query: 186
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,309,196
Effective search space: 138774776
Effective search space used: 138774776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.3 bits)