Query psy17548
Match_columns 426
No_of_seqs 258 out of 1007
Neff 5.9
Searched_HMMs 46136
Date Sat Aug 17 01:20:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17548.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17548hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2871|consensus 100.0 5E-107 1E-111 800.3 20.8 412 13-426 2-449 (449)
2 PF13898 DUF4205: Domain of un 100.0 1.6E-99 3E-104 762.6 27.1 264 19-284 1-276 (342)
3 KOG0027|consensus 99.6 8.5E-16 1.8E-20 138.2 4.2 104 285-388 5-119 (151)
4 COG5126 FRQ1 Ca2+-binding prot 99.4 1.1E-13 2.5E-18 126.1 5.0 104 283-387 15-125 (160)
5 KOG0028|consensus 99.4 1.3E-13 2.8E-18 124.5 2.2 101 285-385 30-137 (172)
6 cd05022 S-100A13 S-100A13: S-1 99.3 4.7E-12 1E-16 105.2 6.4 68 284-351 4-74 (89)
7 cd05027 S-100B S-100B: S-100B 99.2 2.7E-11 5.9E-16 100.3 7.3 68 284-351 4-78 (88)
8 KOG0027|consensus 99.2 3.7E-11 7.9E-16 108.1 8.3 67 286-352 83-149 (151)
9 COG5126 FRQ1 Ca2+-binding prot 99.2 7.9E-11 1.7E-15 107.6 7.8 67 286-352 90-156 (160)
10 PF13499 EF-hand_7: EF-hand do 99.1 9.2E-11 2E-15 90.4 6.6 62 289-350 1-66 (66)
11 cd05025 S-100A1 S-100A1: S-100 99.1 3.6E-10 7.7E-15 93.6 7.5 68 284-351 5-79 (92)
12 cd05026 S-100Z S-100Z: S-100Z 99.1 4.4E-10 9.6E-15 93.7 7.4 68 284-351 6-80 (93)
13 KOG0031|consensus 99.0 2.3E-10 5E-15 103.0 4.7 90 283-376 27-121 (171)
14 PTZ00183 centrin; Provisional 99.0 3.1E-10 6.7E-15 100.6 5.4 94 284-377 13-111 (158)
15 cd05031 S-100A10_like S-100A10 99.0 7.8E-10 1.7E-14 92.0 6.9 66 286-351 6-78 (94)
16 cd05029 S-100A6 S-100A6: S-100 99.0 9.7E-10 2.1E-14 91.0 7.2 68 284-351 6-78 (88)
17 PTZ00184 calmodulin; Provision 99.0 4.4E-10 9.6E-15 98.1 5.1 93 285-377 8-105 (149)
18 cd00052 EH Eps15 homology doma 98.9 2.9E-09 6.4E-14 81.5 6.3 59 291-351 2-60 (67)
19 smart00027 EH Eps15 homology d 98.9 3.7E-09 8E-14 88.2 7.2 65 285-351 7-71 (96)
20 cd00213 S-100 S-100: S-100 dom 98.9 3.4E-09 7.5E-14 86.6 6.7 67 285-351 5-78 (88)
21 PLN02964 phosphatidylserine de 98.8 2.1E-09 4.6E-14 116.9 4.9 89 285-377 140-236 (644)
22 PF14658 EF-hand_9: EF-hand do 98.8 7.2E-09 1.6E-13 81.3 6.3 60 292-351 2-63 (66)
23 KOG0030|consensus 98.8 2.4E-09 5.2E-14 95.1 3.7 104 285-388 8-122 (152)
24 KOG0028|consensus 98.8 1E-08 2.2E-13 93.1 7.1 67 285-351 103-169 (172)
25 cd05023 S-100A11 S-100A11: S-1 98.7 3.4E-08 7.4E-13 82.0 7.4 68 284-351 5-79 (89)
26 cd00051 EFh EF-hand, calcium b 98.7 5.8E-08 1.3E-12 71.0 7.2 61 290-350 2-62 (63)
27 PF13833 EF-hand_8: EF-hand do 98.7 5.3E-08 1.2E-12 72.4 5.9 51 301-351 1-52 (54)
28 PTZ00183 centrin; Provisional 98.6 1.8E-07 3.8E-12 82.9 7.9 64 288-351 90-153 (158)
29 cd05030 calgranulins Calgranul 98.5 1.7E-07 3.6E-12 77.5 6.4 68 284-351 4-78 (88)
30 KOG0037|consensus 98.5 8.2E-08 1.8E-12 91.2 5.1 90 283-374 119-208 (221)
31 PTZ00184 calmodulin; Provision 98.5 2.4E-07 5.1E-12 80.8 7.7 64 288-351 84-147 (149)
32 KOG0030|consensus 98.4 3.1E-07 6.7E-12 81.8 6.0 64 287-351 87-150 (152)
33 KOG0031|consensus 98.3 1.9E-06 4.2E-11 78.0 7.7 66 286-351 99-164 (171)
34 cd00252 SPARC_EC SPARC_EC; ext 98.3 1.7E-06 3.6E-11 75.5 7.0 62 286-351 46-107 (116)
35 KOG0041|consensus 98.3 1.3E-06 2.9E-11 82.1 6.3 68 284-351 95-162 (244)
36 KOG0034|consensus 98.3 2.2E-06 4.8E-11 80.6 7.6 66 288-353 104-176 (187)
37 PF13405 EF-hand_6: EF-hand do 98.0 4.6E-06 1E-10 55.5 3.1 30 289-318 1-31 (31)
38 KOG0036|consensus 98.0 5.6E-06 1.2E-10 85.1 5.0 91 285-376 11-102 (463)
39 PF00036 EF-hand_1: EF hand; 98.0 5.6E-06 1.2E-10 54.8 3.0 29 289-317 1-29 (29)
40 cd05024 S-100A10 S-100A10: A s 97.9 3.6E-05 7.9E-10 64.4 7.6 67 284-351 4-75 (91)
41 KOG0037|consensus 97.8 1.3E-05 2.9E-10 76.3 3.9 88 287-376 56-144 (221)
42 KOG0034|consensus 97.8 2.9E-05 6.4E-10 73.0 5.0 89 284-376 29-124 (187)
43 PLN02964 phosphatidylserine de 97.8 5.2E-05 1.1E-09 83.1 7.4 65 288-352 179-243 (644)
44 KOG0036|consensus 97.6 0.00013 2.8E-09 75.2 7.4 85 287-371 81-171 (463)
45 KOG0038|consensus 97.6 0.0001 2.2E-09 66.6 5.6 66 288-353 108-178 (189)
46 KOG0044|consensus 97.6 0.0001 2.2E-09 69.7 5.7 70 282-351 94-174 (193)
47 KOG0044|consensus 97.5 0.00023 5E-09 67.3 7.2 91 287-377 25-121 (193)
48 KOG0377|consensus 97.2 0.00053 1.2E-08 71.3 6.3 62 289-350 548-613 (631)
49 PRK12309 transaldolase/EF-hand 97.2 0.00048 1E-08 71.8 5.9 51 287-350 333-383 (391)
50 KOG0040|consensus 97.2 0.0003 6.6E-09 81.2 4.3 90 284-374 2249-2351(2399)
51 PF00036 EF-hand_1: EF hand; 97.1 0.00057 1.2E-08 45.2 3.4 27 325-351 1-27 (29)
52 PF13202 EF-hand_5: EF hand; P 97.0 0.00054 1.2E-08 43.7 2.5 25 290-314 1-25 (25)
53 KOG0046|consensus 97.0 0.0014 3E-08 69.5 6.5 66 286-352 17-85 (627)
54 KOG4223|consensus 97.0 0.0008 1.7E-08 67.7 4.3 89 289-377 164-262 (325)
55 PF14788 EF-hand_10: EF hand; 96.8 0.0031 6.8E-08 47.2 5.1 46 305-350 2-47 (51)
56 PF12763 EF-hand_4: Cytoskelet 96.6 0.0077 1.7E-07 51.6 7.2 63 285-350 7-69 (104)
57 KOG4223|consensus 96.6 0.0023 5E-08 64.4 4.2 95 282-376 71-183 (325)
58 KOG4251|consensus 96.4 0.0026 5.7E-08 62.0 3.2 84 268-351 77-167 (362)
59 KOG4065|consensus 96.3 0.011 2.4E-07 51.6 6.4 60 290-349 69-142 (144)
60 smart00054 EFh EF-hand, calciu 96.1 0.0062 1.3E-07 37.2 2.8 28 290-317 2-29 (29)
61 KOG0377|consensus 96.1 0.0035 7.6E-08 65.4 2.5 138 238-377 396-608 (631)
62 PF13202 EF-hand_5: EF hand; P 95.6 0.017 3.6E-07 36.8 3.3 24 326-349 1-24 (25)
63 PF10591 SPARC_Ca_bdg: Secrete 95.0 0.011 2.3E-07 51.4 1.4 59 287-347 53-111 (113)
64 KOG2643|consensus 94.9 0.01 2.2E-07 62.0 1.2 89 288-376 233-338 (489)
65 PF13499 EF-hand_7: EF-hand do 94.9 0.0068 1.5E-07 46.3 -0.1 51 326-376 2-60 (66)
66 KOG2871|consensus 93.9 0.0023 4.9E-08 65.5 -6.1 245 4-281 36-312 (449)
67 PF09279 EF-hand_like: Phospho 93.9 0.12 2.5E-06 41.7 5.0 65 289-354 1-71 (83)
68 PF13833 EF-hand_8: EF-hand do 93.8 0.073 1.6E-06 39.1 3.4 30 287-316 24-53 (54)
69 KOG2643|consensus 93.4 0.26 5.6E-06 51.8 7.6 62 286-348 316-380 (489)
70 PF13405 EF-hand_6: EF-hand do 93.2 0.12 2.6E-06 34.0 3.3 27 325-351 1-27 (31)
71 cd00252 SPARC_EC SPARC_EC; ext 93.1 0.048 1E-06 47.6 1.6 55 322-376 46-100 (116)
72 smart00054 EFh EF-hand, calciu 92.5 0.14 3E-06 30.9 2.7 27 325-351 1-27 (29)
73 cd00051 EFh EF-hand, calcium b 91.6 0.043 9.4E-07 39.3 -0.4 49 326-374 2-54 (63)
74 cd00052 EH Eps15 homology doma 90.9 0.082 1.8E-06 39.9 0.4 50 327-376 2-53 (67)
75 KOG0042|consensus 90.5 0.33 7.1E-06 52.7 4.6 65 288-352 593-657 (680)
76 PF08726 EFhand_Ca_insen: Ca2+ 90.0 0.12 2.7E-06 41.1 0.7 56 288-351 6-68 (69)
77 KOG0038|consensus 89.9 0.2 4.4E-06 45.6 2.1 50 327-376 74-128 (189)
78 PRK12309 transaldolase/EF-hand 89.8 0.26 5.7E-06 51.6 3.3 60 308-376 313-377 (391)
79 cd05031 S-100A10_like S-100A10 89.8 0.21 4.6E-06 41.2 2.1 42 288-329 51-92 (94)
80 smart00027 EH Eps15 homology d 89.7 0.17 3.6E-06 42.0 1.3 52 325-376 11-64 (96)
81 KOG0751|consensus 89.4 0.095 2.1E-06 55.8 -0.4 85 289-376 109-199 (694)
82 KOG2562|consensus 89.4 0.76 1.6E-05 48.8 6.1 86 289-377 276-372 (493)
83 KOG0751|consensus 88.6 0.41 8.9E-06 51.1 3.5 86 287-372 32-124 (694)
84 KOG2243|consensus 87.6 0.54 1.2E-05 55.2 3.9 58 293-351 4062-4119(5019)
85 cd05025 S-100A1 S-100A1: S-100 85.8 0.36 7.8E-06 39.6 1.1 54 323-376 8-72 (92)
86 KOG4666|consensus 84.7 1.1 2.4E-05 45.7 4.1 63 287-351 295-358 (412)
87 KOG3866|consensus 84.0 1.3 2.8E-05 44.9 4.2 59 291-349 247-321 (442)
88 cd00213 S-100 S-100: S-100 dom 83.2 0.48 1E-05 38.3 0.7 53 324-376 8-71 (88)
89 cd05027 S-100B S-100B: S-100B 83.0 0.58 1.3E-05 38.6 1.1 53 324-376 8-71 (88)
90 cd05022 S-100A13 S-100A13: S-1 83.0 0.61 1.3E-05 38.7 1.3 53 325-377 9-68 (89)
91 PLN02228 Phosphoinositide phos 82.4 6.3 0.00014 43.4 9.0 85 267-353 2-93 (567)
92 KOG0035|consensus 80.9 3.1 6.8E-05 47.6 6.2 82 287-368 746-837 (890)
93 PLN02222 phosphoinositide phos 79.4 6.6 0.00014 43.3 7.9 85 267-353 3-91 (581)
94 PF14788 EF-hand_10: EF hand; 78.9 2.6 5.7E-05 31.7 3.3 31 287-317 20-50 (51)
95 cd05026 S-100Z S-100Z: S-100Z 78.0 3.1 6.6E-05 34.5 3.9 31 288-318 53-83 (93)
96 PLN02230 phosphoinositide phos 75.7 10 0.00022 42.0 8.2 83 269-352 9-102 (598)
97 PF05517 p25-alpha: p25-alpha 74.7 12 0.00025 34.2 7.0 59 292-350 6-67 (154)
98 PF05042 Caleosin: Caleosin re 74.6 8.4 0.00018 36.1 6.1 66 246-316 55-124 (174)
99 cd05023 S-100A11 S-100A11: S-1 74.5 4.1 8.8E-05 33.7 3.7 32 287-318 51-82 (89)
100 KOG0169|consensus 74.3 3.4 7.3E-05 46.4 4.0 66 287-352 135-200 (746)
101 cd05029 S-100A6 S-100A6: S-100 72.6 5.1 0.00011 33.0 3.8 32 287-318 50-81 (88)
102 cd05030 calgranulins Calgranul 72.3 5.1 0.00011 32.8 3.8 32 287-318 50-81 (88)
103 KOG1029|consensus 71.3 5 0.00011 45.3 4.4 63 287-351 194-256 (1118)
104 KOG2427|consensus 60.6 6.2 0.00013 41.3 2.5 52 48-104 29-85 (391)
105 PF09069 EF-hand_3: EF-hand; 60.1 47 0.001 27.9 7.2 63 288-353 3-76 (90)
106 KOG1955|consensus 57.5 21 0.00045 38.7 5.7 63 287-351 230-292 (737)
107 KOG4251|consensus 55.8 17 0.00038 36.0 4.5 59 290-348 282-341 (362)
108 KOG3555|consensus 52.7 9.3 0.0002 39.5 2.1 89 288-376 211-302 (434)
109 PF12763 EF-hand_4: Cytoskelet 48.3 18 0.00038 31.0 2.9 32 286-317 41-72 (104)
110 PLN02223 phosphoinositide phos 47.2 46 0.001 36.5 6.5 67 286-353 14-93 (537)
111 KOG4666|consensus 45.3 37 0.00081 35.0 5.1 114 245-372 230-347 (412)
112 KOG1707|consensus 43.9 17 0.00036 40.1 2.5 59 287-351 314-376 (625)
113 PF03672 UPF0154: Uncharacteri 43.1 51 0.0011 26.0 4.5 42 291-333 19-60 (64)
114 KOG2562|consensus 42.7 20 0.00043 38.4 2.8 58 289-346 312-373 (493)
115 PLN02508 magnesium-protoporphy 41.8 14 0.0003 38.0 1.4 94 274-369 30-123 (357)
116 KOG4578|consensus 41.0 22 0.00048 36.6 2.7 63 289-351 334-397 (421)
117 cd05024 S-100A10 S-100A10: A s 37.0 44 0.00096 28.1 3.5 32 288-319 48-79 (91)
118 PF12896 Apc4: Anaphase-promot 36.6 37 0.00079 31.9 3.4 67 140-216 26-92 (210)
119 PRK00523 hypothetical protein; 36.0 57 0.0012 26.3 3.8 42 291-333 27-68 (72)
120 KOG3077|consensus 34.8 82 0.0018 31.4 5.6 67 286-352 62-129 (260)
121 PF14658 EF-hand_9: EF-hand do 33.5 58 0.0013 25.8 3.5 31 286-316 33-64 (66)
122 KOG1707|consensus 32.8 72 0.0016 35.4 5.2 173 136-333 59-241 (625)
123 KOG3555|consensus 32.7 44 0.00096 34.7 3.4 59 289-351 251-309 (434)
124 COG3763 Uncharacterized protei 32.5 77 0.0017 25.5 4.0 43 290-333 25-67 (71)
125 PF10591 SPARC_Ca_bdg: Secrete 31.2 21 0.00045 30.9 0.7 55 321-375 51-107 (113)
126 PF06618 DUF1148: Protein of u 29.8 20 0.00043 29.8 0.3 21 397-417 59-82 (114)
127 PF08461 HTH_12: Ribonuclease 29.8 59 0.0013 25.4 3.0 37 301-337 10-46 (66)
128 PTZ00373 60S Acidic ribosomal 29.6 1.2E+02 0.0027 26.4 5.2 54 290-348 5-58 (112)
129 PRK01844 hypothetical protein; 29.6 82 0.0018 25.4 3.8 43 290-333 25-67 (72)
130 PF08976 DUF1880: Domain of un 28.5 53 0.0011 29.0 2.7 32 321-352 4-35 (118)
131 cd05833 Ribosomal_P2 Ribosomal 27.0 1.4E+02 0.0031 25.8 5.2 53 291-348 4-56 (109)
132 PLN02952 phosphoinositide phos 26.8 1.8E+02 0.0039 32.5 7.1 83 269-352 18-110 (599)
133 KOG3449|consensus 25.7 1.5E+02 0.0033 25.9 4.9 53 291-348 4-56 (112)
134 PF05042 Caleosin: Caleosin re 25.7 49 0.0011 31.1 2.1 38 289-326 8-45 (174)
135 PHA02554 13 neck protein; Prov 25.4 44 0.00096 34.0 1.9 42 306-372 7-54 (311)
136 COG5611 Predicted nucleic-acid 25.4 1.9E+02 0.0041 25.7 5.5 63 287-349 20-84 (130)
137 KOG2301|consensus 23.7 39 0.00086 41.6 1.4 67 285-351 1414-1483(1592)
138 TIGR01456 CECR5 HAD-superfamil 23.6 1.8E+02 0.0038 29.4 5.9 57 270-326 1-70 (321)
139 PF11628 TCR_zetazeta: T-cell 23.2 60 0.0013 22.3 1.6 14 163-176 10-23 (33)
140 PRK00441 argR arginine repress 22.9 1.5E+02 0.0033 26.9 4.8 43 301-343 15-61 (149)
141 PF08897 DUF1841: Domain of un 22.0 1.2E+02 0.0025 27.5 3.8 42 54-109 81-122 (137)
142 PF01023 S_100: S-100/ICaBP ty 21.2 1.3E+02 0.0029 21.6 3.2 31 286-316 4-36 (44)
143 KOG4347|consensus 21.1 98 0.0021 34.7 3.6 47 324-370 555-605 (671)
144 cd04411 Ribosomal_P1_P2_L12p R 21.0 1.8E+02 0.0039 25.0 4.5 40 305-349 17-56 (105)
145 PF00404 Dockerin_1: Dockerin 20.6 1.2E+02 0.0027 18.6 2.5 17 298-314 1-17 (21)
146 PLN00138 large subunit ribosom 20.6 1.7E+02 0.0036 25.6 4.4 48 296-348 9-56 (113)
147 PRK00819 RNA 2'-phosphotransfe 20.5 1.5E+02 0.0032 27.9 4.3 36 299-334 28-63 (179)
148 PF01316 Arg_repressor: Argini 20.5 1.7E+02 0.0038 23.2 4.1 31 304-334 19-49 (70)
149 PF12872 OST-HTH: OST-HTH/LOTU 20.3 2.1E+02 0.0045 21.8 4.5 57 288-365 8-64 (74)
150 PF08384 NPP: Pro-opiomelanoco 20.0 33 0.00071 25.2 -0.1 20 241-260 17-36 (45)
No 1
>KOG2871|consensus
Probab=100.00 E-value=5.1e-107 Score=800.28 Aligned_cols=412 Identities=42% Similarity=0.712 Sum_probs=387.3
Q ss_pred HHHHHHHHhhcCCccccccccccccceeecCCCCcceEecCCCcceehHHHHHHHHHHHhhcCCCCCCccCCCCHHHHHH
Q psy17548 13 NVLSDIVRVCWGTNVKEDIFVRWTQGFQFSLDEPTALVQYEGGPCAVLAPAQAFILKYIIQNVDPVNDNWRTIEQEDQNK 92 (426)
Q Consensus 13 ~~a~~l~~llfG~~~~~~~~~~W~QgF~F~~~~~~~LvQ~~gGPcgVlA~VQA~vlk~lLF~~~~~~~~~~~~~~~~q~~ 92 (426)
++.+|++++|||..+++++|.||.|||+|+++++++|+|++||||||+|+||||+||++||..+.. .+..++.+.+++
T Consensus 2 ~el~e~~~llwg~~vs~~vf~rwtqgf~fsk~~~t~lvq~eggpcavia~vqafllk~ilm~~e~~--~~s~~~g~~~~e 79 (449)
T KOG2871|consen 2 KELVEESDLLWGIVVSKSVFARWTQGFRFSKEEITALVQPEGGPCAVIAPVQAFLLKAILMRAEWL--QTSFCSGAPKEE 79 (449)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHhhcceeecCcccccccccCCCceeeehhHHHHHHHHHhcCcccc--ccccccCchHHH
Confidence 345999999999999999999999999999999999999999999999999999999999988865 666777788999
Q ss_pred HHHHHHHHHHHh-hcC-CCceEEEEecCC------------c-CC-------------------CCCCCcccceeeEEEE
Q psy17548 93 LLVHAVVEMLKQ-AVD-SNTFHIVYIDAT------------E-AS-------------------SPDYSFDQFHSQIKVQ 138 (426)
Q Consensus 93 ~L~~Al~~IL~~-a~~-~~~~~vv~~~~~------------~-~~-------------------~~~~~~d~~~e~l~~~ 138 (426)
+|.+++|||+-. ++. .++|++|.+-+. + .+ +...+++.||+.++..
T Consensus 80 l~~h~lsd~~~s~~~~~~~~~~Lv~lL~g~tte~~ASlt~~~~~SS~q~eeA~~s~~L~ie~~~~~~ls~~~~~~~l~~~ 159 (449)
T KOG2871|consen 80 LLYHLLSDILASRLCSVVQGYVLVYLLRGRTTEEVASLTGPLAASSDQVEEALFSAALEIERTISDKLSVTMFHPSLDEV 159 (449)
T ss_pred HHHHhhhhHhHhhhhhhccceEEEEeeccCchhhhhhccCccccchHHHHHHHHhcchhhhhhhhcccCHHHHhHhhhhe
Confidence 999999999998 344 457999887530 0 00 1456788999999999
Q ss_pred ecCCHHHHHHHHHHhhHhhhcccchHHHHHHHHHhhhHHHHHhhcCCCCCCCccCCCCcchHhhhhhhhccccccccccC
Q psy17548 139 SCSSCDEVEQFYNQRIDLLYNRFGVLLFLYSVLYSKGLARLRLEVSDITEPLIDREFGYGSQSLINLMITGRAVNYVFDH 218 (426)
Q Consensus 139 ~~~~~~~l~~~l~~~~~~f~~~~GvllfLySvilSRgi~~v~~dmd~~~~~Li~~~~G~~sqelvNLlLtGrAvsnvfdg 218 (426)
.|++...+...+...+..|.+.+||+|||||++||||+++||+|+||++.|||++.|||+||+|||||||||||||||||
T Consensus 160 ~f~~~a~~~~~~~~~~~~~~~t~GvLLFLySalLTrgle~V~aDiddas~plits~~g~gsq~iVnLLLtGrAvpnV~dg 239 (449)
T KOG2871|consen 160 FFDHSACYFHDSVTEYFTEEETPGVLLFLYSALLTRGLEKVRADIDDASEPLITSSYGHGSQSIVNLLLTGRAVPNVWDG 239 (449)
T ss_pred eccchHHHHHHHHHHHHhhhcccchHHHHHHHHHhhhHHHhhhccccCCCCcccCCCCcchHHHHHHHHccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcceecCcccCcceeeeeeccccCcccCCCCCCCCCCceEEEecCCceeEeeecccccccccchHHHHHHhhhhhc
Q psy17548 219 VQDIDGLQLQGINQQSQIGFLTLLEHLRYCEVGSYLKNPINPVWVLGSETHLTVTFSFEKRLACLESSADKARRVFKMFD 298 (426)
Q Consensus 219 ~~~~~~~~L~GI~~rs~iGfLt~~E~~~~~~vGs~lK~P~~PiWv~~~~~h~~vlF~~~~~l~s~e~~~~~~~raF~~fD 298 (426)
++++|||+|+||+++++|||||++|.+|||+||+++|+|++||||++|++||||||++++.++.++++.++++|+|+.+|
T Consensus 240 ~~dvggm~l~gI~e~~dvgfltlle~l~~ckvgs~lk~pr~Piwv~gSeth~tvlfs~d~~l~~~~~~s~q~rR~f~a~d 319 (449)
T KOG2871|consen 240 VVDVGGMKLYGIPEQGDVGFLTLLELLRYCKVGSALKQPRQPIWVLGSETHLTVLFSCDGHLVVPENPSEQLRRNFHAYD 319 (449)
T ss_pred ccccCcceeeccccccchhHHHHHHHHHHHHHHHhhcCCCCceeEecCCCceEEEEecCccccCCCCCCHHHHhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCHHHHHHHHHHcC-CCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhhCCCCCCccccceeeccCCCCCCCccc
Q psy17548 299 PDGNNFIASDHLQNLLAKLD-LVSDINYVDIMRKKLDPDELGIILLSAFMDEFFGDPEKPPPDMFDIFHYNGLARSNYER 377 (426)
Q Consensus 299 ~dg~G~Is~~eL~~vL~~LG-~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~~~~~~~l~~aF~vfD~nG~~~s~~~~ 377 (426)
+.++|||+++-++.+|++++ ...++++|..|...+|+++.|+|..++|+..+++.+....+++|.+|||||+.+||.++
T Consensus 320 ~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~p~tgs~g~~~f~~~h~nGi~gsn~gg 399 (449)
T KOG2871|consen 320 PEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFFPTTGSSGPGAFAGYHYNGISGSNVGG 399 (449)
T ss_pred ccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccccCccccCCCcceeeeeccCccCCCCCC
Confidence 99999999999999999999 66678999999999999999999999999999998888999999999999999999999
Q ss_pred ceEEEeceeeeeccccccc-CCCCchhhhhhcCCCCcEEecCCCCCCCCC
Q psy17548 378 KVMYRMAHCVLLECNINCL-LETNPMLTCLQTKWPSIELSWVHGVTPSLN 426 (426)
Q Consensus 378 ~V~~~~G~a~~~~~~~~~~-~~~~~~~~~l~tkw~~~~~~w~~~~~ps~n 426 (426)
++||..|.+++++.+.+.. +.++||++|||||||+|+|+|+.++.||||
T Consensus 400 ka~~veGg~~l~~~~~k~~st~NtPlvrcirTKW~~a~iswh~g~~psL~ 449 (449)
T KOG2871|consen 400 KAMYVEGGAALPDVVAKEESTLNTPLVRCIRTKWPEAEISWHVGMLPSLN 449 (449)
T ss_pred ceEEeecccccCCccchhhhcccchHHHHHhccCCceeEEeecCCCccCC
Confidence 9999999999999998888 555699999999999999999999999998
No 2
>PF13898 DUF4205: Domain of unknown function (DUF4205)
Probab=100.00 E-value=1.6e-99 Score=762.64 Aligned_cols=264 Identities=44% Similarity=0.734 Sum_probs=245.3
Q ss_pred HHhhcCCccccccccccc-cceeecCCC---CcceEecCCCcceehHHHHHHHHHHHhhcCCCCC---CccCCCCHHHHH
Q psy17548 19 VRVCWGTNVKEDIFVRWT-QGFQFSLDE---PTALVQYEGGPCAVLAPAQAFILKYIIQNVDPVN---DNWRTIEQEDQN 91 (426)
Q Consensus 19 ~~llfG~~~~~~~~~~W~-QgF~F~~~~---~~~LvQ~~gGPcgVlA~VQA~vlk~lLF~~~~~~---~~~~~~~~~~q~ 91 (426)
|++|||++.+ .++.+|+ |||+|++++ +|||+|++||||||||||||||||||||.++..+ .++.++++++|+
T Consensus 1 r~llFG~~~~-~~~~~W~qqGF~Fs~~~~~l~~gLvQ~~GGPCgVlA~VQA~iLK~LLF~~~~~~~~~~~~~~~s~~~q~ 79 (342)
T PF13898_consen 1 RQLLFGSTVK-PFFSEWKQQGFVFSDDEPDLPYGLVQHKGGPCGVLAAVQAFILKYLLFERKGSDVNSSSLLQPSEEEQT 79 (342)
T ss_pred CeeeeCCCCC-CcCHHHHhCCEEeCCCCCCCceEEEecCCCCchhHHHHHHHHHHHHhcCCCccccccccccCCCHHHHH
Confidence 6899999995 7889998 599999987 9999999999999999999999999999998742 478999999999
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEec--CCcCCCCCCCcccceeeEEEEecCCHHHHHHHHHHhhHhhh--cccchHHHH
Q psy17548 92 KLLVHAVVEMLKQAVDSNTFHIVYID--ATEASSPDYSFDQFHSQIKVQSCSSCDEVEQFYNQRIDLLY--NRFGVLLFL 167 (426)
Q Consensus 92 ~~L~~Al~~IL~~a~~~~~~~vv~~~--~~~~~~~~~~~d~~~e~l~~~~~~~~~~l~~~l~~~~~~f~--~~~GvllfL 167 (426)
+||++|||+|||+|++++++.|+... ......+.|+.|+|||++++++|+++++++.||++|+++|+ +++||+|||
T Consensus 80 ~aLv~ALa~ILw~ag~~~~a~V~L~~~~~~~~~s~~~~~d~f~e~L~l~~~~s~e~l~~fl~~~i~~f~~~~~~Gvllfl 159 (342)
T PF13898_consen 80 EALVQALADILWQAGENKKAVVCLPSEDSQFSPSGDYSADGFTERLQLFEFTSIEDLEQFLRRHIPQFQEEGPSGVLLFL 159 (342)
T ss_pred HHHHHHHHHHHHhhccCCceEEEeeccccccccccccchhceeeeeeEEecCCHHHHHHHHHHHHHHhhcCCCceehHHH
Confidence 99999999999999986555444332 23344588999999999999999999999999999999999 689999999
Q ss_pred HHHHHhhhHHHHHhhcCCCCCCCccCCCCcchHhhhhhhhccccccccccCcccc-CcceecCcccCcceeeeeeccccC
Q psy17548 168 YSVLYSKGLARLRLEVSDITEPLIDREFGYGSQSLINLMITGRAVNYVFDHVQDI-DGLQLQGINQQSQIGFLTLLEHLR 246 (426)
Q Consensus 168 ySvilSRgi~~v~~dmd~~~~~Li~~~~G~~sqelvNLlLtGrAvsnvfdg~~~~-~~~~L~GI~~rs~iGfLt~~E~~~ 246 (426)
||+|||||+++||+|||+|++|||++ |||||||||||||||||+||||||+.++ ++++||||.+|++|||||++||++
T Consensus 160 yS~ilsrg~~~v~~d~d~~~~~Li~~-~g~~sq~lvnLlLtG~A~~~v~dg~~~~~~~~~l~Gi~~~~~iG~Lt~~e~~~ 238 (342)
T PF13898_consen 160 YSVILSRGIERVRSDMDDPTTPLIGP-HGHCSQELVNLLLTGRAVSNVFDGVDDGNGGLTLKGISSRSDIGFLTLFEHYR 238 (342)
T ss_pred HHHHHhccHHHHHHHhCCCCCceeCc-CCchhhhhhheeEcCcccCcccCCccccCCCeEEeccccCCceeEEEehhhhc
Confidence 99999999999999999999999995 9999999999999999999999999999 779999999999999999999999
Q ss_pred cccCCCCCCCCCCceEEEecCCceeEeeeccccccccc
Q psy17548 247 YCEVGSYLKNPINPVWVLGSETHLTVTFSFEKRLACLE 284 (426)
Q Consensus 247 ~~~vGs~lK~P~~PiWv~~~~~h~~vlF~~~~~l~s~e 284 (426)
||+||++||||++||||+|||+||||||++|++|++++
T Consensus 239 ~~~vG~~lK~P~~PiWv~~~~~h~svlF~~~~~l~~~~ 276 (342)
T PF13898_consen 239 YCQVGSFLKTPKFPIWVVCSESHYSVLFSLNRRLLSDW 276 (342)
T ss_pred CCCcCCCCCCCCCCEEEEEeCCceEEEEeCCHHHhhhh
Confidence 99999999999999999999999999999999999876
No 3
>KOG0027|consensus
Probab=99.58 E-value=8.5e-16 Score=138.21 Aligned_cols=104 Identities=21% Similarity=0.293 Sum_probs=92.3
Q ss_pred chHHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhhCCC-----C----
Q psy17548 285 SSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFFGDP-----E---- 355 (426)
Q Consensus 285 ~~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~~~~-----~---- 355 (426)
.+..+++++|+.||+|++|+|+..||+.+|+.||..++++++..|++++|.+++|.|+++||+.++.+.. .
T Consensus 5 ~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~ 84 (151)
T KOG0027|consen 5 EQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASS 84 (151)
T ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccH
Confidence 3467899999999999999999999999999999999999999999999999999999999999887541 1
Q ss_pred CCccccceeeccCCCCCCCcc--cceEEEeceeee
Q psy17548 356 KPPPDMFDIFHYNGLARSNYE--RKVMYRMAHCVL 388 (426)
Q Consensus 356 ~~l~~aF~vfD~nG~~~s~~~--~~V~~~~G~a~~ 388 (426)
+++++||++||.||+|+++++ .+|+...|+...
T Consensus 85 ~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~ 119 (151)
T KOG0027|consen 85 EELKEAFRVFDKDGDGFISASELKKVLTSLGEKLT 119 (151)
T ss_pred HHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCC
Confidence 279999999999999998887 467767676554
No 4
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.42 E-value=1.1e-13 Score=126.13 Aligned_cols=104 Identities=14% Similarity=0.283 Sum_probs=89.9
Q ss_pred ccchHHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhhCC-----CCCC
Q psy17548 283 LESSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFFGD-----PEKP 357 (426)
Q Consensus 283 ~e~~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~~~-----~~~~ 357 (426)
++.+++++++||.+||+|++|.|+.++|..+||.+|..+++.++.+|+..+|. +.|.|+|.+|+..|... .+++
T Consensus 15 t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Ee 93 (160)
T COG5126 15 TEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEE 93 (160)
T ss_pred CHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHH
Confidence 34567899999999999999999999999999999999999999999999999 99999999999987643 2468
Q ss_pred ccccceeeccCCCCCCCccc--ceEEEeceee
Q psy17548 358 PPDMFDIFHYNGLARSNYER--KVMYRMAHCV 387 (426)
Q Consensus 358 l~~aF~vfD~nG~~~s~~~~--~V~~~~G~a~ 387 (426)
+++||++||.|++|++..+. .|.-.+|+..
T Consensus 94 l~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~ 125 (160)
T COG5126 94 LREAFKLFDKDHDGYISIGELRRVLKSLGERL 125 (160)
T ss_pred HHHHHHHhCCCCCceecHHHHHHHHHhhcccC
Confidence 99999999999999977664 3333455544
No 5
>KOG0028|consensus
Probab=99.38 E-value=1.3e-13 Score=124.54 Aligned_cols=101 Identities=15% Similarity=0.264 Sum_probs=91.4
Q ss_pred chHHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhhCC-----CCCCcc
Q psy17548 285 SSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFFGD-----PEKPPP 359 (426)
Q Consensus 285 ~~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~~~-----~~~~l~ 359 (426)
++.++++.+|++||.+++|+|..+||+.+|+++|..+..+|+..|+.++|.++.|.|.|++|...|... ..++++
T Consensus 30 ~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~ 109 (172)
T KOG0028|consen 30 EQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIK 109 (172)
T ss_pred HHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHH
Confidence 455789999999999999999999999999999999999999999999999999999999999886642 346899
Q ss_pred ccceeeccCCCCCCCcc--cceEEEece
Q psy17548 360 DMFDIFHYNGLARSNYE--RKVMYRMAH 385 (426)
Q Consensus 360 ~aF~vfD~nG~~~s~~~--~~V~~~~G~ 385 (426)
++|++||.|++|++++. .+|+..+|+
T Consensus 110 ~afrl~D~D~~Gkis~~~lkrvakeLge 137 (172)
T KOG0028|consen 110 KAFRLFDDDKTGKISQRNLKRVAKELGE 137 (172)
T ss_pred HHHHcccccCCCCcCHHHHHHHHHHhCc
Confidence 99999999999999888 477777777
No 6
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.29 E-value=4.7e-12 Score=105.19 Aligned_cols=68 Identities=16% Similarity=0.186 Sum_probs=63.1
Q ss_pred cchHHHHHHhhhhhcC-CCCCccCHHHHHHHHHH-cCCCCCH-HHHHHHHHhcCCCCCCeeehhHHHHHhh
Q psy17548 284 ESSADKARRVFKMFDP-DGNNFIASDHLQNLLAK-LDLVSDI-NYVDIMRKKLDPDELGIILLSAFMDEFF 351 (426)
Q Consensus 284 e~~~~~~~raF~~fD~-dg~G~Is~~eL~~vL~~-LG~~~t~-eev~~mi~~lD~d~~G~I~~~EFl~~~~ 351 (426)
|..+..++++|+.||+ +++|+|+.+||+.+|+. ||..++. +++++|++.+|.|+||.|+|+||+.++.
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~ 74 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIG 74 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 3456789999999999 99999999999999999 9988888 9999999999999999999999999876
No 7
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.22 E-value=2.7e-11 Score=100.29 Aligned_cols=68 Identities=22% Similarity=0.332 Sum_probs=62.9
Q ss_pred cchHHHHHHhhhhhc-CCCCC-ccCHHHHHHHHHH-----cCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhh
Q psy17548 284 ESSADKARRVFKMFD-PDGNN-FIASDHLQNLLAK-----LDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFF 351 (426)
Q Consensus 284 e~~~~~~~raF~~fD-~dg~G-~Is~~eL~~vL~~-----LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~ 351 (426)
|..+..++++|+.|| +||+| +|+.+||+.+|++ +|...+++++++|++.+|.|++|.|+|+||+.++.
T Consensus 4 e~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 4 EKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 345678999999998 89999 5999999999999 99999999999999999999999999999998765
No 8
>KOG0027|consensus
Probab=99.21 E-value=3.7e-11 Score=108.12 Aligned_cols=67 Identities=25% Similarity=0.458 Sum_probs=63.8
Q ss_pred hHHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhhC
Q psy17548 286 SADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFFG 352 (426)
Q Consensus 286 ~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~~ 352 (426)
..+++++||+.||+||+|+|+.+||+.+|+.+|.+.+.++++.|++.+|.|++|.|+|+||+++|..
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 4569999999999999999999999999999999999999999999999999999999999998764
No 9
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.16 E-value=7.9e-11 Score=107.61 Aligned_cols=67 Identities=25% Similarity=0.343 Sum_probs=63.8
Q ss_pred hHHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhhC
Q psy17548 286 SADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFFG 352 (426)
Q Consensus 286 ~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~~ 352 (426)
..+++++||+.||.|++|+|+..+|+++|+.+|...++++++.|++.+|+|++|.|+|++|.+.+..
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 3579999999999999999999999999999999999999999999999999999999999997763
No 10
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.14 E-value=9.2e-11 Score=90.44 Aligned_cols=62 Identities=26% Similarity=0.470 Sum_probs=55.2
Q ss_pred HHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHH----HHHHHHhcCCCCCCeeehhHHHHHh
Q psy17548 289 KARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINY----VDIMRKKLDPDELGIILLSAFMDEF 350 (426)
Q Consensus 289 ~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~ee----v~~mi~~lD~d~~G~I~~~EFl~~~ 350 (426)
+++++|+.||.|++|+|+.+||+.+++.++...++++ ++.+++.+|.|++|.|+|+||+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4789999999999999999999999999998776554 4555999999999999999998865
No 11
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.07 E-value=3.6e-10 Score=93.62 Aligned_cols=68 Identities=24% Similarity=0.387 Sum_probs=60.1
Q ss_pred cchHHHHHHhhhhhc-CCCCCc-cCHHHHHHHHHH-cCC----CCCHHHHHHHHHhcCCCCCCeeehhHHHHHhh
Q psy17548 284 ESSADKARRVFKMFD-PDGNNF-IASDHLQNLLAK-LDL----VSDINYVDIMRKKLDPDELGIILLSAFMDEFF 351 (426)
Q Consensus 284 e~~~~~~~raF~~fD-~dg~G~-Is~~eL~~vL~~-LG~----~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~ 351 (426)
|..++.++++|+.|| .|++|+ |+.+||+.+|+. +|. .++++++++|++.+|.|++|.|+|+||+.++.
T Consensus 5 e~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~ 79 (92)
T cd05025 5 ETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 345678999999997 999995 999999999986 654 56889999999999999999999999998765
No 12
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.05 E-value=4.4e-10 Score=93.74 Aligned_cols=68 Identities=22% Similarity=0.393 Sum_probs=59.2
Q ss_pred cchHHHHHHhhhhhc-CCCCCc-cCHHHHHHHHHH-c----CCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhh
Q psy17548 284 ESSADKARRVFKMFD-PDGNNF-IASDHLQNLLAK-L----DLVSDINYVDIMRKKLDPDELGIILLSAFMDEFF 351 (426)
Q Consensus 284 e~~~~~~~raF~~fD-~dg~G~-Is~~eL~~vL~~-L----G~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~ 351 (426)
|..+..++++|+.|| .||+|+ |+.+||+.+|+. + +...+++++++|++++|.|++|.|+|+||+.++.
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 345678999999999 789995 999999999987 3 3445788999999999999999999999999765
No 13
>KOG0031|consensus
Probab=99.02 E-value=2.3e-10 Score=103.03 Aligned_cols=90 Identities=23% Similarity=0.407 Sum_probs=81.1
Q ss_pred ccchHHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhhCC-----CCCC
Q psy17548 283 LESSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFFGD-----PEKP 357 (426)
Q Consensus 283 ~e~~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~~~-----~~~~ 357 (426)
+..+++++++||.+.|.|+||+|..++|++.+.+||-.++++|++.|+++. .|-|+|.-|+.+|..+ +++.
T Consensus 27 ~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gtdpe~~ 102 (171)
T KOG0031|consen 27 DQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGTDPEEV 102 (171)
T ss_pred hHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCCCHHHH
Confidence 346789999999999999999999999999999999999999999999875 6899999999988753 3456
Q ss_pred ccccceeeccCCCCCCCcc
Q psy17548 358 PPDMFDIFHYNGLARSNYE 376 (426)
Q Consensus 358 l~~aF~vfD~nG~~~s~~~ 376 (426)
+..||+.||.+|.|.++.+
T Consensus 103 I~~AF~~FD~~~~G~I~~d 121 (171)
T KOG0031|consen 103 ILNAFKTFDDEGSGKIDED 121 (171)
T ss_pred HHHHHHhcCccCCCccCHH
Confidence 8899999999999998877
No 14
>PTZ00183 centrin; Provisional
Probab=99.02 E-value=3.1e-10 Score=100.56 Aligned_cols=94 Identities=21% Similarity=0.367 Sum_probs=82.4
Q ss_pred cchHHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhhCC-----CCCCc
Q psy17548 284 ESSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFFGD-----PEKPP 358 (426)
Q Consensus 284 e~~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~~~-----~~~~l 358 (426)
+.+.++++++|..||.+++|+|+..||..+|+.+|...+.++++.+++.+|.+++|.|+|+||+..+... .+..+
T Consensus 13 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l 92 (158)
T PTZ00183 13 EDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEI 92 (158)
T ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHH
Confidence 3456789999999999999999999999999999998999999999999999999999999998865431 12468
Q ss_pred cccceeeccCCCCCCCccc
Q psy17548 359 PDMFDIFHYNGLARSNYER 377 (426)
Q Consensus 359 ~~aF~vfD~nG~~~s~~~~ 377 (426)
+.+|+.||.||.|..+.+.
T Consensus 93 ~~~F~~~D~~~~G~i~~~e 111 (158)
T PTZ00183 93 LKAFRLFDDDKTGKISLKN 111 (158)
T ss_pred HHHHHHhCCCCCCcCcHHH
Confidence 8899999999999877663
No 15
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.01 E-value=7.8e-10 Score=92.03 Aligned_cols=66 Identities=24% Similarity=0.342 Sum_probs=60.3
Q ss_pred hHHHHHHhhhhhcC-CC-CCccCHHHHHHHHHH-----cCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhh
Q psy17548 286 SADKARRVFKMFDP-DG-NNFIASDHLQNLLAK-----LDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFF 351 (426)
Q Consensus 286 ~~~~~~raF~~fD~-dg-~G~Is~~eL~~vL~~-----LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~ 351 (426)
....++++|+.||. || +|+|+.+||+.+|++ +|..+++++++.|++.+|.+++|.|+|+||+.++.
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 35689999999997 97 799999999999997 67888999999999999999999999999998765
No 16
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.00 E-value=9.7e-10 Score=91.04 Aligned_cols=68 Identities=10% Similarity=0.200 Sum_probs=61.4
Q ss_pred cchHHHHHHhhhhhcC-CC-CCccCHHHHHHHHH---HcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhh
Q psy17548 284 ESSADKARRVFKMFDP-DG-NNFIASDHLQNLLA---KLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFF 351 (426)
Q Consensus 284 e~~~~~~~raF~~fD~-dg-~G~Is~~eL~~vL~---~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~ 351 (426)
|..+..+...|+.||. || +|+|+.+||+++|+ .+|.+.+++++++|++.+|.|++|.|+|+||+..+.
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Confidence 3345678999999998 77 99999999999997 479999999999999999999999999999998765
No 17
>PTZ00184 calmodulin; Provisional
Probab=98.99 E-value=4.4e-10 Score=98.09 Aligned_cols=93 Identities=19% Similarity=0.319 Sum_probs=81.7
Q ss_pred chHHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhhCC-----CCCCcc
Q psy17548 285 SSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFFGD-----PEKPPP 359 (426)
Q Consensus 285 ~~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~~~-----~~~~l~ 359 (426)
.+.+++++.|+.+|.+++|.|+.+||..++..+|..++.+++..|++.+|.+++|.|+|+||+..+... ....++
T Consensus 8 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~ 87 (149)
T PTZ00184 8 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIK 87 (149)
T ss_pred HHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999999999876532 123577
Q ss_pred ccceeeccCCCCCCCccc
Q psy17548 360 DMFDIFHYNGLARSNYER 377 (426)
Q Consensus 360 ~aF~vfD~nG~~~s~~~~ 377 (426)
.+|+.||.||.++.+...
T Consensus 88 ~~F~~~D~~~~g~i~~~e 105 (149)
T PTZ00184 88 EAFKVFDRDGNGFISAAE 105 (149)
T ss_pred HHHHhhCCCCCCeEeHHH
Confidence 899999999999877663
No 18
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.90 E-value=2.9e-09 Score=81.50 Aligned_cols=59 Identities=24% Similarity=0.402 Sum_probs=55.2
Q ss_pred HHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhh
Q psy17548 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFF 351 (426)
Q Consensus 291 ~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~ 351 (426)
+++|+.+|+|++|.|+.+||+.+|+.+|. ++++++.|++.+|.+++|.|+|+||+..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 67999999999999999999999999986 788999999999999999999999988654
No 19
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.90 E-value=3.7e-09 Score=88.21 Aligned_cols=65 Identities=14% Similarity=0.183 Sum_probs=60.0
Q ss_pred chHHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhh
Q psy17548 285 SSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFF 351 (426)
Q Consensus 285 ~~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~ 351 (426)
.+.++++++|+.||.|++|+|+.+||+.+|+.+| +++++++.|++.+|.+++|.|+|+||+.++.
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMH 71 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 3567899999999999999999999999999987 5788999999999999999999999998765
No 20
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.89 E-value=3.4e-09 Score=86.64 Aligned_cols=67 Identities=21% Similarity=0.277 Sum_probs=60.2
Q ss_pred chHHHHHHhhhhhcC--CCCCccCHHHHHHHHHH-cCCCC----CHHHHHHHHHhcCCCCCCeeehhHHHHHhh
Q psy17548 285 SSADKARRVFKMFDP--DGNNFIASDHLQNLLAK-LDLVS----DINYVDIMRKKLDPDELGIILLSAFMDEFF 351 (426)
Q Consensus 285 ~~~~~~~raF~~fD~--dg~G~Is~~eL~~vL~~-LG~~~----t~eev~~mi~~lD~d~~G~I~~~EFl~~~~ 351 (426)
.+++.++++|+.||+ |++|+|+.+||+.+|+. +|..+ ++++++.|++.+|.+++|.|+|++|+.++.
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~ 78 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIG 78 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHH
Confidence 456789999999999 89999999999999987 66544 589999999999999999999999998765
No 21
>PLN02964 phosphatidylserine decarboxylase
Probab=98.84 E-value=2.1e-09 Score=116.88 Aligned_cols=89 Identities=17% Similarity=0.211 Sum_probs=78.2
Q ss_pred chHHHHHHhhhhhcCCCCCccCHHHHHHHHHHcC-CCCCHHH---HHHHHHhcCCCCCCeeehhHHHHHhhCC----CCC
Q psy17548 285 SSADKARRVFKMFDPDGNNFIASDHLQNLLAKLD-LVSDINY---VDIMRKKLDPDELGIILLSAFMDEFFGD----PEK 356 (426)
Q Consensus 285 ~~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG-~~~t~ee---v~~mi~~lD~d~~G~I~~~EFl~~~~~~----~~~ 356 (426)
.+.++++++|++||+|++|+| |+.+|+++| ..+++++ +++|++.+|.|++|.|+|+||+.++... .++
T Consensus 140 kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seE 215 (644)
T PLN02964 140 QEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAAN 215 (644)
T ss_pred HHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHH
Confidence 356789999999999999997 999999999 5888887 8999999999999999999999877532 235
Q ss_pred CccccceeeccCCCCCCCccc
Q psy17548 357 PPPDMFDIFHYNGLARSNYER 377 (426)
Q Consensus 357 ~l~~aF~vfD~nG~~~s~~~~ 377 (426)
++.++|++||.||+|..+.++
T Consensus 216 EL~eaFk~fDkDgdG~Is~dE 236 (644)
T PLN02964 216 KKEELFKAADLNGDGVVTIDE 236 (644)
T ss_pred HHHHHHHHhCCCCCCcCCHHH
Confidence 699999999999999988774
No 22
>PF14658 EF-hand_9: EF-hand domain
Probab=98.84 E-value=7.2e-09 Score=81.34 Aligned_cols=60 Identities=17% Similarity=0.282 Sum_probs=57.1
Q ss_pred HhhhhhcCCCCCccCHHHHHHHHHHcCC-CCCHHHHHHHHHhcCCCCC-CeeehhHHHHHhh
Q psy17548 292 RVFKMFDPDGNNFIASDHLQNLLAKLDL-VSDINYVDIMRKKLDPDEL-GIILLSAFMDEFF 351 (426)
Q Consensus 292 raF~~fD~dg~G~Is~~eL~~vL~~LG~-~~t~eev~~mi~~lD~d~~-G~I~~~EFl~~~~ 351 (426)
.+|++||+++.|.|..++|...|+++|. .+++++++++.+++|+++. |.|+|++|...|.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 4899999999999999999999999999 8899999999999999998 9999999998874
No 23
>KOG0030|consensus
Probab=98.82 E-value=2.4e-09 Score=95.07 Aligned_cols=104 Identities=13% Similarity=0.154 Sum_probs=87.4
Q ss_pred chHHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC--CCCeeehhHHHHHhhCC--C-----C
Q psy17548 285 SSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPD--ELGIILLSAFMDEFFGD--P-----E 355 (426)
Q Consensus 285 ~~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d--~~G~I~~~EFl~~~~~~--~-----~ 355 (426)
++..+++++|.+||..+||.|+..+..++||+||..+|+.++...+.+.+.+ +.-.|+|++|+-++..- . -
T Consensus 8 d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~ 87 (152)
T KOG0030|consen 8 DQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTY 87 (152)
T ss_pred chHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcH
Confidence 3457999999999999999999999999999999999999999999999887 67889999999887632 1 1
Q ss_pred CCccccceeeccCCCCCCCcc--cceEEEeceeee
Q psy17548 356 KPPPDMFDIFHYNGLARSNYE--RKVMYRMAHCVL 388 (426)
Q Consensus 356 ~~l~~aF~vfD~nG~~~s~~~--~~V~~~~G~a~~ 388 (426)
++..+..++||++|+|..... .+|....|+...
T Consensus 88 edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~ 122 (152)
T KOG0030|consen 88 EDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLT 122 (152)
T ss_pred HHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhcc
Confidence 467788999999999986544 466667777654
No 24
>KOG0028|consensus
Probab=98.81 E-value=1e-08 Score=93.11 Aligned_cols=67 Identities=18% Similarity=0.245 Sum_probs=64.0
Q ss_pred chHHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhh
Q psy17548 285 SSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFF 351 (426)
Q Consensus 285 ~~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~ 351 (426)
...++++++|++||-|++|.|+..+|+.+++.||..++++|+++||.++|.|++|.|+-+||+.+|.
T Consensus 103 dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 103 DTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred CcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHh
Confidence 3567999999999999999999999999999999999999999999999999999999999998864
No 25
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.73 E-value=3.4e-08 Score=82.02 Aligned_cols=68 Identities=21% Similarity=0.268 Sum_probs=59.1
Q ss_pred cchHHHHHHhhhh-hcCCCCC-ccCHHHHHHHHHHc-----CCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhh
Q psy17548 284 ESSADKARRVFKM-FDPDGNN-FIASDHLQNLLAKL-----DLVSDINYVDIMRKKLDPDELGIILLSAFMDEFF 351 (426)
Q Consensus 284 e~~~~~~~raF~~-fD~dg~G-~Is~~eL~~vL~~L-----G~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~ 351 (426)
|..+..+.++|+. +|+||+| +|+.+||+.+|..- +-..++.+++.|++.+|.|+||.|+|+||++++.
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 3456789999999 6788976 99999999999985 4455678999999999999999999999998765
No 26
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.70 E-value=5.8e-08 Score=70.98 Aligned_cols=61 Identities=30% Similarity=0.465 Sum_probs=57.8
Q ss_pred HHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHh
Q psy17548 290 ARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEF 350 (426)
Q Consensus 290 ~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~ 350 (426)
++++|+.+|.+++|.|+.+++..+++.+|...+.+++..+++.+|.+++|.|++++|...+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5789999999999999999999999999999999999999999999999999999998754
No 27
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.65 E-value=5.3e-08 Score=72.37 Aligned_cols=51 Identities=22% Similarity=0.321 Sum_probs=48.2
Q ss_pred CCCccCHHHHHHHHHHcCCC-CCHHHHHHHHHhcCCCCCCeeehhHHHHHhh
Q psy17548 301 GNNFIASDHLQNLLAKLDLV-SDINYVDIMRKKLDPDELGIILLSAFMDEFF 351 (426)
Q Consensus 301 g~G~Is~~eL~~vL~~LG~~-~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~ 351 (426)
.+|.|+.++|+.+|+.+|.. +++++++.|++.+|.|++|.|+|+||+..+.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 37999999999999999999 9999999999999999999999999998764
No 28
>PTZ00183 centrin; Provisional
Probab=98.57 E-value=1.8e-07 Score=82.87 Aligned_cols=64 Identities=19% Similarity=0.226 Sum_probs=61.1
Q ss_pred HHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhh
Q psy17548 288 DKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFF 351 (426)
Q Consensus 288 ~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~ 351 (426)
+.++++|+.||.+++|+|+.+|+..+++.+|..++.++++.|+..+|.+++|.|+|+||...+.
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 153 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMK 153 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 5789999999999999999999999999999999999999999999999999999999988765
No 29
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.54 E-value=1.7e-07 Score=77.46 Aligned_cols=68 Identities=15% Similarity=0.255 Sum_probs=59.7
Q ss_pred cchHHHHHHhhhhhcCC--CCCccCHHHHHHHHH-HcCCCCC----HHHHHHHHHhcCCCCCCeeehhHHHHHhh
Q psy17548 284 ESSADKARRVFKMFDPD--GNNFIASDHLQNLLA-KLDLVSD----INYVDIMRKKLDPDELGIILLSAFMDEFF 351 (426)
Q Consensus 284 e~~~~~~~raF~~fD~d--g~G~Is~~eL~~vL~-~LG~~~t----~eev~~mi~~lD~d~~G~I~~~EFl~~~~ 351 (426)
|..+..+.+.|+.|+.. .+|+|+.+||+.+|+ .+|..++ +++++.|++.+|.+++|.|+|+||+.++.
T Consensus 4 e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~ 78 (88)
T cd05030 4 EKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVI 78 (88)
T ss_pred HHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 34567889999999966 489999999999997 6777676 89999999999999999999999998765
No 30
>KOG0037|consensus
Probab=98.54 E-value=8.2e-08 Score=91.17 Aligned_cols=90 Identities=19% Similarity=0.204 Sum_probs=76.8
Q ss_pred ccchHHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhhCCCCCCccccc
Q psy17548 283 LESSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFFGDPEKPPPDMF 362 (426)
Q Consensus 283 ~e~~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~~~~~~~l~~aF 362 (426)
-|.-++.=+.+|+.||+|++|.|+.+||+++|..+|..++++-.+.+++++|..+.|.|.|++|++..... ..+-++|
T Consensus 119 Lw~~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L--~~lt~~F 196 (221)
T KOG0037|consen 119 LWKYINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL--QRLTEAF 196 (221)
T ss_pred HHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH--HHHHHHH
Confidence 35556778999999999999999999999999999999999999999999999989999999998842210 1256789
Q ss_pred eeeccCCCCCCC
Q psy17548 363 DIFHYNGLARSN 374 (426)
Q Consensus 363 ~vfD~nG~~~s~ 374 (426)
+.+|++.++.++
T Consensus 197 r~~D~~q~G~i~ 208 (221)
T KOG0037|consen 197 RRRDTAQQGSIT 208 (221)
T ss_pred HHhccccceeEE
Confidence 999998777644
No 31
>PTZ00184 calmodulin; Provisional
Probab=98.54 E-value=2.4e-07 Score=80.80 Aligned_cols=64 Identities=30% Similarity=0.476 Sum_probs=60.5
Q ss_pred HHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhh
Q psy17548 288 DKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFF 351 (426)
Q Consensus 288 ~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~ 351 (426)
+.++.+|+.||.+++|+|+.++++.+|+.+|..++.++++.++..+|.+++|.|+|+||+..+.
T Consensus 84 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 84 EEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 4688999999999999999999999999999999999999999999999999999999998764
No 32
>KOG0030|consensus
Probab=98.45 E-value=3.1e-07 Score=81.82 Aligned_cols=64 Identities=22% Similarity=0.310 Sum_probs=57.6
Q ss_pred HHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhh
Q psy17548 287 ADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFF 351 (426)
Q Consensus 287 ~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~ 351 (426)
.++.-+-.+.||++|+|+|...||+++|.+||.+++++|++.+++-.. |++|.|+|++|++.++
T Consensus 87 ~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 87 YEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVKHIM 150 (152)
T ss_pred HHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHHHHh
Confidence 357888899999999999999999999999999999999999987653 7789999999998765
No 33
>KOG0031|consensus
Probab=98.31 E-value=1.9e-06 Score=77.98 Aligned_cols=66 Identities=26% Similarity=0.258 Sum_probs=63.2
Q ss_pred hHHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhh
Q psy17548 286 SADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFF 351 (426)
Q Consensus 286 ~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~ 351 (426)
+++.+..||+.||.++.|.|..+.|+.+|...|.+++++||+.|.+..-+|..|.|+|.+|..++.
T Consensus 99 pe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 99 PEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999999999999999876
No 34
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.30 E-value=1.7e-06 Score=75.49 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=55.2
Q ss_pred hHHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhh
Q psy17548 286 SADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFF 351 (426)
Q Consensus 286 ~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~ 351 (426)
...++.-+|..+|.|+||+|+.+||..++ +...+..+..+++.+|.|+||.|+++||..-+.
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 35689999999999999999999999887 345577889999999999999999999998774
No 35
>KOG0041|consensus
Probab=98.28 E-value=1.3e-06 Score=82.08 Aligned_cols=68 Identities=25% Similarity=0.321 Sum_probs=62.6
Q ss_pred cchHHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhh
Q psy17548 284 ESSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFF 351 (426)
Q Consensus 284 e~~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~ 351 (426)
..+++.+...|+.||.|.||||+..||+.+|..||.+-|-=-++.||+++|.|.||+|+|-||+-++-
T Consensus 95 rkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfr 162 (244)
T KOG0041|consen 95 RKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFR 162 (244)
T ss_pred HHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 45678899999999999999999999999999999888877889999999999999999999987664
No 36
>KOG0034|consensus
Probab=98.27 E-value=2.2e-06 Score=80.57 Aligned_cols=66 Identities=24% Similarity=0.376 Sum_probs=55.2
Q ss_pred HHHHHhhhhhcCCCCCccCHHHHHHHHHHcC-CCCC--HHHHH----HHHHhcCCCCCCeeehhHHHHHhhCC
Q psy17548 288 DKARRVFKMFDPDGNNFIASDHLQNLLAKLD-LVSD--INYVD----IMRKKLDPDELGIILLSAFMDEFFGD 353 (426)
Q Consensus 288 ~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG-~~~t--~eev~----~mi~~lD~d~~G~I~~~EFl~~~~~~ 353 (426)
++++-||+.||.+++|+|+.+|++.+++.+- ...+ ++.++ ..+.++|.|+||.|+|+||.+.+...
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 5999999999999999999999999999864 3344 55444 45678999999999999999987643
No 37
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.02 E-value=4.6e-06 Score=55.52 Aligned_cols=30 Identities=43% Similarity=0.809 Sum_probs=27.1
Q ss_pred HHHHhhhhhcCCCCCccCHHHHHHHHH-HcC
Q psy17548 289 KARRVFKMFDPDGNNFIASDHLQNLLA-KLD 318 (426)
Q Consensus 289 ~~~raF~~fD~dg~G~Is~~eL~~vL~-~LG 318 (426)
+++++|+.||.|++|+|+.+||+++|+ +||
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 578999999999999999999999999 687
No 38
>KOG0036|consensus
Probab=98.01 E-value=5.6e-06 Score=85.06 Aligned_cols=91 Identities=18% Similarity=0.212 Sum_probs=71.7
Q ss_pred chHHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCC-CCHHHHHHHHHhcCCCCCCeeehhHHHHHhhCCCCCCccccce
Q psy17548 285 SSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLV-SDINYVDIMRKKLDPDELGIILLSAFMDEFFGDPEKPPPDMFD 363 (426)
Q Consensus 285 ~~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~-~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~~~~~~~l~~aF~ 363 (426)
+...+++..|+.||.+++|+++.++|...+.+|++. +..+....+++.+|.|.+|.++|+||.+.+... +.++-+.|.
T Consensus 11 er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~-E~~l~~~F~ 89 (463)
T KOG0036|consen 11 ERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK-ELELYRIFQ 89 (463)
T ss_pred HHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh-HHHHHHHHh
Confidence 345689999999999999999999999999999998 667788999999999999999999998765422 123444555
Q ss_pred eeccCCCCCCCcc
Q psy17548 364 IFHYNGLARSNYE 376 (426)
Q Consensus 364 vfD~nG~~~s~~~ 376 (426)
-.|.|.++++.++
T Consensus 90 ~iD~~hdG~i~~~ 102 (463)
T KOG0036|consen 90 SIDLEHDGKIDPN 102 (463)
T ss_pred hhccccCCccCHH
Confidence 5555555555444
No 39
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.00 E-value=5.6e-06 Score=54.83 Aligned_cols=29 Identities=28% Similarity=0.614 Sum_probs=25.5
Q ss_pred HHHHhhhhhcCCCCCccCHHHHHHHHHHc
Q psy17548 289 KARRVFKMFDPDGNNFIASDHLQNLLAKL 317 (426)
Q Consensus 289 ~~~raF~~fD~dg~G~Is~~eL~~vL~~L 317 (426)
+++++|+.||+|+||+|+.+|+..+|++|
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 46889999999999999999999998875
No 40
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.94 E-value=3.6e-05 Score=64.35 Aligned_cols=67 Identities=28% Similarity=0.372 Sum_probs=55.7
Q ss_pred cchHHHHHHhhhhhcCCCCCccCHHHHHHHHHH-c----CCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhh
Q psy17548 284 ESSADKARRVFKMFDPDGNNFIASDHLQNLLAK-L----DLVSDINYVDIMRKKLDPDELGIILLSAFMDEFF 351 (426)
Q Consensus 284 e~~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~-L----G~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~ 351 (426)
|..+..+..+|+.|-.+ .+.++..||+.+|++ | +-.-.++.++.+++.+|.|+||.|+|.|||.++.
T Consensus 4 E~ai~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~ 75 (91)
T cd05024 4 EHSMEKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIA 75 (91)
T ss_pred HHHHHHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 34466789999999844 569999999999965 4 3344678999999999999999999999998765
No 41
>KOG0037|consensus
Probab=97.84 E-value=1.3e-05 Score=76.28 Aligned_cols=88 Identities=17% Similarity=0.146 Sum_probs=74.7
Q ss_pred HHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCC-CCCHHHHHHHHHhcCCCCCCeeehhHHHHHhhCCCCCCccccceee
Q psy17548 287 ADKARRVFKMFDPDGNNFIASDHLQNLLAKLDL-VSDINYVDIMRKKLDPDELGIILLSAFMDEFFGDPEKPPPDMFDIF 365 (426)
Q Consensus 287 ~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~-~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~~~~~~~l~~aF~vf 365 (426)
-..+-..|...|+|+.|+|+.+||+++|...+. ..+.+.++.||.-+|.+.+|.|.++||..++.-. ..-+..|+-|
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i--~~Wr~vF~~~ 133 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI--NQWRNVFRTY 133 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH--HHHHHHHHhc
Confidence 347889999999999999999999999997664 5588999999999999999999999998765421 1245789999
Q ss_pred ccCCCCCCCcc
Q psy17548 366 HYNGLARSNYE 376 (426)
Q Consensus 366 D~nG~~~s~~~ 376 (426)
|.|+.+.++..
T Consensus 134 D~D~SG~I~~s 144 (221)
T KOG0037|consen 134 DRDRSGTIDSS 144 (221)
T ss_pred ccCCCCcccHH
Confidence 99999987655
No 42
>KOG0034|consensus
Probab=97.77 E-value=2.9e-05 Score=73.04 Aligned_cols=89 Identities=16% Similarity=0.301 Sum_probs=71.3
Q ss_pred cchHHHHHHhhhhhcCC-CCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCe-eehhHHHHHhh---CCC--CC
Q psy17548 284 ESSADKARRVFKMFDPD-GNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGI-ILLSAFMDEFF---GDP--EK 356 (426)
Q Consensus 284 e~~~~~~~raF~~fD~d-g~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~-I~~~EFl~~~~---~~~--~~ 356 (426)
..+++.+...|..+|.+ ++|+|+.+|+..+. .+...+ -.+++++..|.+++|. |+|++|++.+. +.. +.
T Consensus 29 ~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~Np---~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~ 104 (187)
T KOG0034|consen 29 ANEIERLYERFKKLDRNNGDGYLTKEEFLSIP-ELALNP---LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKRE 104 (187)
T ss_pred HHHHHHHHHHHHHhccccccCccCHHHHHHHH-HHhcCc---HHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHH
Confidence 34677899999999999 99999999999998 333322 4567888889988888 99999998654 322 22
Q ss_pred CccccceeeccCCCCCCCcc
Q psy17548 357 PPPDMFDIFHYNGLARSNYE 376 (426)
Q Consensus 357 ~l~~aF~vfD~nG~~~s~~~ 376 (426)
.++-||++||.|++|.++.+
T Consensus 105 Kl~faF~vYD~~~~G~I~re 124 (187)
T KOG0034|consen 105 KLRFAFRVYDLDGDGFISRE 124 (187)
T ss_pred HHHHHHHHhcCCCCCcCcHH
Confidence 46669999999999998866
No 43
>PLN02964 phosphatidylserine decarboxylase
Probab=97.76 E-value=5.2e-05 Score=83.11 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=60.6
Q ss_pred HHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhhC
Q psy17548 288 DKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFFG 352 (426)
Q Consensus 288 ~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~~ 352 (426)
..++++|+.+|.|++|.|+.+|+..+|..+|...+++++.++++.+|.|++|.|+++||.+.+..
T Consensus 179 ~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 179 SFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 35899999999999999999999999999998889999999999999999999999999887654
No 44
>KOG0036|consensus
Probab=97.62 E-value=0.00013 Score=75.25 Aligned_cols=85 Identities=18% Similarity=0.199 Sum_probs=69.7
Q ss_pred HHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhhCCCCCCcccc-----
Q psy17548 287 ADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFFGDPEKPPPDM----- 361 (426)
Q Consensus 287 ~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~~~~~~~l~~a----- 361 (426)
+.++.+.|+..|.+.||.|..+|+.+.|+++|.+++.++++.+++.+|.++++.|+|+||-+.++--+++.+.+.
T Consensus 81 E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~s~i~di~~~W~ 160 (463)
T KOG0036|consen 81 ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPESDLEDIYDFWR 160 (463)
T ss_pred HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCChhHHHHHHHhhh
Confidence 458899999999999999999999999999999999999999999999999999999999876553333333333
Q ss_pred -ceeeccCCCC
Q psy17548 362 -FDIFHYNGLA 371 (426)
Q Consensus 362 -F~vfD~nG~~ 371 (426)
+.++|.+-+.
T Consensus 161 h~~~idigE~~ 171 (463)
T KOG0036|consen 161 HVLLIDIGEDA 171 (463)
T ss_pred hheEEEccccc
Confidence 3455554443
No 45
>KOG0038|consensus
Probab=97.61 E-value=0.0001 Score=66.56 Aligned_cols=66 Identities=27% Similarity=0.370 Sum_probs=56.5
Q ss_pred HHHHHhhhhhcCCCCCccCHHHHHHHHHHcC-CCCCHHHH----HHHHHhcCCCCCCeeehhHHHHHhhCC
Q psy17548 288 DKARRVFKMFDPDGNNFIASDHLQNLLAKLD-LVSDINYV----DIMRKKLDPDELGIILLSAFMDEFFGD 353 (426)
Q Consensus 288 ~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG-~~~t~eev----~~mi~~lD~d~~G~I~~~EFl~~~~~~ 353 (426)
-++.-||+.||-|+|++|...+|...++.|- -.++++|+ +.++.+.|.||||.++|.||-.+++..
T Consensus 108 lK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 108 LKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred hhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhC
Confidence 3678899999999999999999999999874 35566665 566888999999999999999988753
No 46
>KOG0044|consensus
Probab=97.59 E-value=0.0001 Score=69.66 Aligned_cols=70 Identities=19% Similarity=0.394 Sum_probs=52.1
Q ss_pred cccchHHHHHHhhhhhcCCCCCccCHHHHHHHHHHc----CC------CC-CHHHHHHHHHhcCCCCCCeeehhHHHHHh
Q psy17548 282 CLESSADKARRVFKMFDPDGNNFIASDHLQNLLAKL----DL------VS-DINYVDIMRKKLDPDELGIILLSAFMDEF 350 (426)
Q Consensus 282 s~e~~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~L----G~------~~-t~eev~~mi~~lD~d~~G~I~~~EFl~~~ 350 (426)
+..+..++++=+|++||.||||+|+..|+-.++++. |- .. .++-+..+.+++|.|+||.++++||+...
T Consensus 94 ~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~ 173 (193)
T KOG0044|consen 94 SRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGC 173 (193)
T ss_pred cCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHh
Confidence 344445677778999999999999999988777763 32 11 23456888999999999999999998754
Q ss_pred h
Q psy17548 351 F 351 (426)
Q Consensus 351 ~ 351 (426)
.
T Consensus 174 ~ 174 (193)
T KOG0044|consen 174 K 174 (193)
T ss_pred h
Confidence 4
No 47
>KOG0044|consensus
Probab=97.53 E-value=0.00023 Score=67.30 Aligned_cols=91 Identities=12% Similarity=0.205 Sum_probs=74.9
Q ss_pred HHHHHHhhhhhcCCC-CCccCHHHHHHHHHHcCCC-CCHHHHHHHHHhcCCCCCCeeehhHHHHHhhCC----CCCCccc
Q psy17548 287 ADKARRVFKMFDPDG-NNFIASDHLQNLLAKLDLV-SDINYVDIMRKKLDPDELGIILLSAFMDEFFGD----PEKPPPD 360 (426)
Q Consensus 287 ~~~~~raF~~fD~dg-~G~Is~~eL~~vL~~LG~~-~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~~~----~~~~l~~ 360 (426)
.+++++.++.|=.+- +|.++.++++.+++...-. -+..+++.+.+..|.|++|.|+|.||+..+.-. .++.++=
T Consensus 25 ~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w 104 (193)
T KOG0044|consen 25 KKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKW 104 (193)
T ss_pred HHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhh
Confidence 457777787777674 9999999999999999853 345678999999999999999999999876522 2345777
Q ss_pred cceeeccCCCCCCCccc
Q psy17548 361 MFDIFHYNGLARSNYER 377 (426)
Q Consensus 361 aF~vfD~nG~~~s~~~~ 377 (426)
+|++||.||+|.++.++
T Consensus 105 ~F~lyD~dgdG~It~~E 121 (193)
T KOG0044|consen 105 AFRLYDLDGDGYITKEE 121 (193)
T ss_pred hheeecCCCCceEcHHH
Confidence 89999999999988775
No 48
>KOG0377|consensus
Probab=97.24 E-value=0.00053 Score=71.33 Aligned_cols=62 Identities=19% Similarity=0.314 Sum_probs=55.8
Q ss_pred HHHHhhhhhcCCCCCccCHHHHHHHHHHcC----CCCCHHHHHHHHHhcCCCCCCeeehhHHHHHh
Q psy17548 289 KARRVFKMFDPDGNNFIASDHLQNLLAKLD----LVSDINYVDIMRKKLDPDELGIILLSAFMDEF 350 (426)
Q Consensus 289 ~~~raF~~fD~dg~G~Is~~eL~~vL~~LG----~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~ 350 (426)
.++-+|...|.|++|+|+.+|++++.+-++ ...+++++.++.+.+|.|+||.|+++||+..|
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAF 613 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAF 613 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHH
Confidence 578899999999999999999999988765 57789999999999999999999999997643
No 49
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.22 E-value=0.00048 Score=71.76 Aligned_cols=51 Identities=24% Similarity=0.438 Sum_probs=45.1
Q ss_pred HHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHh
Q psy17548 287 ADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEF 350 (426)
Q Consensus 287 ~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~ 350 (426)
...++.+|+.||.||||+|+.+|+.. ++.|++.+|.|++|.|+++||...+
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~ 383 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGL 383 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHH
Confidence 34679999999999999999999832 5789999999999999999998864
No 50
>KOG0040|consensus
Probab=97.19 E-value=0.0003 Score=81.25 Aligned_cols=90 Identities=19% Similarity=0.279 Sum_probs=77.6
Q ss_pred cchHHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCC--HH-----HHHHHHHhcCCCCCCeeehhHHHHHhhCCC--
Q psy17548 284 ESSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSD--IN-----YVDIMRKKLDPDELGIILLSAFMDEFFGDP-- 354 (426)
Q Consensus 284 e~~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t--~e-----ev~~mi~~lD~d~~G~I~~~EFl~~~~~~~-- 354 (426)
|.+..++.-+|+.||++.+|.++-.+++.+||.+|..++ ++ +.+++++-+||+-+|.|+..|||+.|...+
T Consensus 2249 Ee~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETe 2328 (2399)
T KOG0040|consen 2249 EEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETE 2328 (2399)
T ss_pred HHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccc
Confidence 445678999999999999999999999999999998663 34 899999999999999999999999888653
Q ss_pred ----CCCccccceeeccCCCCCCC
Q psy17548 355 ----EKPPPDMFDIFHYNGLARSN 374 (426)
Q Consensus 355 ----~~~l~~aF~vfD~nG~~~s~ 374 (426)
..++..||+-.|. |..+.+
T Consensus 2329 NI~s~~eIE~AfraL~a-~~~yvt 2351 (2399)
T KOG0040|consen 2329 NILSSEEIEDAFRALDA-GKPYVT 2351 (2399)
T ss_pred cccchHHHHHHHHHhhc-CCcccc
Confidence 2478899999998 776644
No 51
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.12 E-value=0.00057 Score=45.20 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCCCCCeeehhHHHHHhh
Q psy17548 325 YVDIMRKKLDPDELGIILLSAFMDEFF 351 (426)
Q Consensus 325 ev~~mi~~lD~d~~G~I~~~EFl~~~~ 351 (426)
|++++++.+|.|++|.|+++||...+.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 678999999999999999999998764
No 52
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.02 E-value=0.00054 Score=43.74 Aligned_cols=25 Identities=32% Similarity=0.632 Sum_probs=19.2
Q ss_pred HHHhhhhhcCCCCCccCHHHHHHHH
Q psy17548 290 ARRVFKMFDPDGNNFIASDHLQNLL 314 (426)
Q Consensus 290 ~~raF~~fD~dg~G~Is~~eL~~vL 314 (426)
++++|+.+|.|+||.|+.+|+++++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4567888888888888888887754
No 53
>KOG0046|consensus
Probab=96.98 E-value=0.0014 Score=69.55 Aligned_cols=66 Identities=15% Similarity=0.252 Sum_probs=59.6
Q ss_pred hHHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCC---CHHHHHHHHHhcCCCCCCeeehhHHHHHhhC
Q psy17548 286 SADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVS---DINYVDIMRKKLDPDELGIILLSAFMDEFFG 352 (426)
Q Consensus 286 ~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~---t~eev~~mi~~lD~d~~G~I~~~EFl~~~~~ 352 (426)
+..+++..|...| |++|+|+..+|..++.+.+... ..+++++++.+.++|.+|.|+|+||+..++.
T Consensus 17 El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 17 ELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 3567899999999 9999999999999999988655 4789999999999999999999999998774
No 54
>KOG4223|consensus
Probab=96.95 E-value=0.0008 Score=67.66 Aligned_cols=89 Identities=16% Similarity=0.257 Sum_probs=65.4
Q ss_pred HHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCC-CHHHHHHHHHhcCCCCCCeeehhHHHHHhhCCC----C-----CCc
Q psy17548 289 KARRVFKMFDPDGNNFIASDHLQNLLAKLDLVS-DINYVDIMRKKLDPDELGIILLSAFMDEFFGDP----E-----KPP 358 (426)
Q Consensus 289 ~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~-t~eev~~mi~~lD~d~~G~I~~~EFl~~~~~~~----~-----~~l 358 (426)
+=++.|+.-|.|+||..+.+|+-..|-==.... .+--|++-+..+|.|+||.|+++||+.-|+... + .+-
T Consensus 164 rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Er 243 (325)
T KOG4223|consen 164 RDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTER 243 (325)
T ss_pred HHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccH
Confidence 458899999999999999999998873211111 112346678889999999999999999777432 1 233
Q ss_pred cccceeeccCCCCCCCccc
Q psy17548 359 PDMFDIFHYNGLARSNYER 377 (426)
Q Consensus 359 ~~aF~vfD~nG~~~s~~~~ 377 (426)
.+-|..+|+|++|+-+.+.
T Consensus 244 e~F~~~~DknkDG~L~~dE 262 (325)
T KOG4223|consen 244 EQFFEFRDKNKDGKLDGDE 262 (325)
T ss_pred HHHHHHhhcCCCCccCHHH
Confidence 3445677999999987764
No 55
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.76 E-value=0.0031 Score=47.24 Aligned_cols=46 Identities=15% Similarity=0.276 Sum_probs=37.8
Q ss_pred cCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHh
Q psy17548 305 IASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEF 350 (426)
Q Consensus 305 Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~ 350 (426)
++-+|++.+|+.+++.++++++..+.++.|.+++|.+.-+||...+
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy 47 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFY 47 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHH
Confidence 5678999999999999999999999999999999999999997654
No 56
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.60 E-value=0.0077 Score=51.60 Aligned_cols=63 Identities=19% Similarity=0.294 Sum_probs=54.3
Q ss_pred chHHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHh
Q psy17548 285 SSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEF 350 (426)
Q Consensus 285 ~~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~ 350 (426)
.+.+++.+.|+..|+ ++|+|+.++.+.++..-|+. .+.+..+-+-.|.|++|.++++||.-.|
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~--~~~L~~IW~LaD~~~dG~L~~~EF~iAm 69 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGLP--RDVLAQIWNLADIDNDGKLDFEEFAIAM 69 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSS--HHHHHHHHHHH-SSSSSEEEHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCC--HHHHHHHHhhhcCCCCCcCCHHHHHHHH
Confidence 456789999999986 68999999999999998864 6889999999999999999999997643
No 57
>KOG4223|consensus
Probab=96.55 E-value=0.0023 Score=64.42 Aligned_cols=95 Identities=15% Similarity=0.263 Sum_probs=71.9
Q ss_pred cccchHHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhhCC--------
Q psy17548 282 CLESSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFFGD-------- 353 (426)
Q Consensus 282 s~e~~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~~~-------- 353 (426)
.++...+++.+.|.+.|.+++|||+.+||+.-+..--..--.+++.+-+...|.|.+|.|+|+|+...+...
T Consensus 71 ~~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~ 150 (325)
T KOG4223|consen 71 TPEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFP 150 (325)
T ss_pred CcchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccc
Confidence 345566799999999999999999999999887664433334566777888999999999999998876531
Q ss_pred -CC--C-------CccccceeeccCCCCCCCcc
Q psy17548 354 -PE--K-------PPPDMFDIFHYNGLARSNYE 376 (426)
Q Consensus 354 -~~--~-------~l~~aF~vfD~nG~~~s~~~ 376 (426)
++ . --++.|++=|.||++..|-.
T Consensus 151 d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~E 183 (325)
T KOG4223|consen 151 DEEDNEEYKKMIARDEERFKAADQDGDGSLTLE 183 (325)
T ss_pred cchhcHHHHHHHHHHHHHHhhcccCCCCcccHH
Confidence 11 0 13456888899988876644
No 58
>KOG4251|consensus
Probab=96.36 E-value=0.0026 Score=61.96 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=59.3
Q ss_pred CceeEeeeccccccc----ccchHHHHHHhhhhhcCCCCCccCHHHHHHHHH-HcCCCC--CHHHHHHHHHhcCCCCCCe
Q psy17548 268 THLTVTFSFEKRLAC----LESSADKARRVFKMFDPDGNNFIASDHLQNLLA-KLDLVS--DINYVDIMRKKLDPDELGI 340 (426)
Q Consensus 268 ~h~~vlF~~~~~l~s----~e~~~~~~~raF~~fD~dg~G~Is~~eL~~vL~-~LG~~~--t~eev~~mi~~lD~d~~G~ 340 (426)
-|--|+|+.|-.=.. +..-.+.+..+|+.-|.+.||+|++.|+++-++ ..-.-+ ..++-+...+.+|+|+||.
T Consensus 77 FhQEvflgkdLggfDedaeprrsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGh 156 (362)
T KOG4251|consen 77 FHQEVFLGKDLGGFDEDAEPRRSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGH 156 (362)
T ss_pred hhhhheeccCCCCcccccchhHHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCc
Confidence 466788887754332 223356789999999999999999999976554 332111 1233445566789999999
Q ss_pred eehhHHHHHhh
Q psy17548 341 ILLSAFMDEFF 351 (426)
Q Consensus 341 I~~~EFl~~~~ 351 (426)
|+|+||.-.|+
T Consensus 157 vsWdEykvkFl 167 (362)
T KOG4251|consen 157 VSWDEYKVKFL 167 (362)
T ss_pred eehhhhhhHHH
Confidence 99999976554
No 59
>KOG4065|consensus
Probab=96.32 E-value=0.011 Score=51.61 Aligned_cols=60 Identities=22% Similarity=0.262 Sum_probs=46.9
Q ss_pred HHHhhhhhcCCCCCccCHHHHHHHHHHc------CC----CCCHHHHHHHHHh----cCCCCCCeeehhHHHHH
Q psy17548 290 ARRVFKMFDPDGNNFIASDHLQNLLAKL------DL----VSDINYVDIMRKK----LDPDELGIILLSAFMDE 349 (426)
Q Consensus 290 ~~raF~~fD~dg~G~Is~~eL~~vL~~L------G~----~~t~eev~~mi~~----lD~d~~G~I~~~EFl~~ 349 (426)
--.-|+++|-|+||+|+--||-.++.-. |. .+++.|++.|++. .|-|+||.|+|.||++.
T Consensus 69 qfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 69 QFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 3457899999999999999998888743 33 2356777777654 57899999999999864
No 60
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.07 E-value=0.0062 Score=37.18 Aligned_cols=28 Identities=32% Similarity=0.680 Sum_probs=22.9
Q ss_pred HHHhhhhhcCCCCCccCHHHHHHHHHHc
Q psy17548 290 ARRVFKMFDPDGNNFIASDHLQNLLAKL 317 (426)
Q Consensus 290 ~~raF~~fD~dg~G~Is~~eL~~vL~~L 317 (426)
++++|+.+|.+++|.|+.+++..+++++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~~ 29 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKAL 29 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHhC
Confidence 5678888888888888888888887753
No 61
>KOG0377|consensus
Probab=96.06 E-value=0.0035 Score=65.41 Aligned_cols=138 Identities=16% Similarity=0.211 Sum_probs=92.6
Q ss_pred eeeeccccCcccCCCC---------CCCCCCceEEEecCCceeEeeecccccccccch-----------HHHHHHhhhhh
Q psy17548 238 FLTLLEHLRYCEVGSY---------LKNPINPVWVLGSETHLTVTFSFEKRLACLESS-----------ADKARRVFKMF 297 (426)
Q Consensus 238 fLt~~E~~~~~~vGs~---------lK~P~~PiWv~~~~~h~~vlF~~~~~l~s~e~~-----------~~~~~raF~~f 297 (426)
-||+|-+-+|.++||+ =++|+|=-..+.+-+|..-| -.....+ +++. ..++++.|+.+
T Consensus 396 vlTiFSASNYYe~GSNrGAYikl~~~~~PhfvQY~a~k~t~~~tl-rqR~~~v-EeSAlk~Lrerl~s~~sdL~~eF~~~ 473 (631)
T KOG0377|consen 396 VLTIFSASNYYEIGSNRGAYIKLGNQLTPHFVQYQAAKQTKRLTL-RQRMGIV-EESALKELRERLRSHRSDLEDEFRKY 473 (631)
T ss_pred EEEEEeccchheecCCCceEEEeCCCCCchHHHHHhhhhhhhhhH-HHHhhHH-HHHHHHHHHHHHHhhhhHHHHHHHhc
Confidence 4788889999999884 25676666665444444322 2222222 1211 24688999999
Q ss_pred cCCCCCccCHHHHHHHHHH-cCCCCC--------------------------------H--------------HHHHHHH
Q psy17548 298 DPDGNNFIASDHLQNLLAK-LDLVSD--------------------------------I--------------NYVDIMR 330 (426)
Q Consensus 298 D~dg~G~Is~~eL~~vL~~-LG~~~t--------------------------------~--------------eev~~mi 330 (426)
|.+++|+|+...-..+|.. +|+.++ + ..++.+.
T Consensus 474 D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr~ks~LetiF 553 (631)
T KOG0377|consen 474 DPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLYRNKSSLETIF 553 (631)
T ss_pred ChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHHhchhhHHHHH
Confidence 9999999999999998885 222110 0 1234567
Q ss_pred HhcCCCCCCeeehhHHHHHh---hC-----CCCCCccccceeeccCCCCCCCccc
Q psy17548 331 KKLDPDELGIILLSAFMDEF---FG-----DPEKPPPDMFDIFHYNGLARSNYER 377 (426)
Q Consensus 331 ~~lD~d~~G~I~~~EFl~~~---~~-----~~~~~l~~aF~vfD~nG~~~s~~~~ 377 (426)
+-+|.|+.|.|+.+||.+.+ .. -.+.++.+.=+.+|.||+|+++.|+
T Consensus 554 ~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNE 608 (631)
T KOG0377|consen 554 NIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNE 608 (631)
T ss_pred HHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHH
Confidence 78999999999999997642 21 1234566667888999999887764
No 62
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=95.59 E-value=0.017 Score=36.81 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.1
Q ss_pred HHHHHHhcCCCCCCeeehhHHHHH
Q psy17548 326 VDIMRKKLDPDELGIILLSAFMDE 349 (426)
Q Consensus 326 v~~mi~~lD~d~~G~I~~~EFl~~ 349 (426)
++++++.+|.|++|.|+++||.+.
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 456789999999999999999874
No 63
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=95.03 E-value=0.011 Score=51.37 Aligned_cols=59 Identities=15% Similarity=0.184 Sum_probs=44.8
Q ss_pred HHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHH
Q psy17548 287 ADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFM 347 (426)
Q Consensus 287 ~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl 347 (426)
...+.--|...|.++||+++.+||+.+.+.| ...+.-+..+++..|.|+||.|++.|+.
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~ 111 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWC 111 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHc
Confidence 4567778999999999999999999987766 4445568899999999999999999975
No 64
>KOG2643|consensus
Probab=94.93 E-value=0.01 Score=62.02 Aligned_cols=89 Identities=18% Similarity=0.174 Sum_probs=60.9
Q ss_pred HHHHHhhhhhcCCCCCccCHHHHHHHHHH------cCCCC----C-----HHHHH--HHHHhcCCCCCCeeehhHHHHHh
Q psy17548 288 DKARRVFKMFDPDGNNFIASDHLQNLLAK------LDLVS----D-----INYVD--IMRKKLDPDELGIILLSAFMDEF 350 (426)
Q Consensus 288 ~~~~raF~~fD~dg~G~Is~~eL~~vL~~------LG~~~----t-----~eev~--~mi~~lD~d~~G~I~~~EFl~~~ 350 (426)
...+-||++||.||||-|+.+|+..+++- +|... + .-++. ....-+..+++|.++++||.+.+
T Consensus 233 ~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~ 312 (489)
T KOG2643|consen 233 RNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQ 312 (489)
T ss_pred ccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHH
Confidence 35677999999999999999999988842 23211 1 11221 23344689999999999998876
Q ss_pred hCCCCCCccccceeeccCCCCCCCcc
Q psy17548 351 FGDPEKPPPDMFDIFHYNGLARSNYE 376 (426)
Q Consensus 351 ~~~~~~~l~~aF~vfD~nG~~~s~~~ 376 (426)
-..+.+-++--|.-||+...+.+++.
T Consensus 313 e~Lq~Eil~lEF~~~~~~~~g~Ise~ 338 (489)
T KOG2643|consen 313 ENLQEEILELEFERFDKGDSGAISEV 338 (489)
T ss_pred HHHHHHHHHHHHHHhCcccccccCHH
Confidence 54333444555888888776555544
No 65
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=94.90 E-value=0.0068 Score=46.26 Aligned_cols=51 Identities=20% Similarity=0.222 Sum_probs=39.9
Q ss_pred HHHHHHhcCCCCCCeeehhHHHHHhhCCC----C----CCccccceeeccCCCCCCCcc
Q psy17548 326 VDIMRKKLDPDELGIILLSAFMDEFFGDP----E----KPPPDMFDIFHYNGLARSNYE 376 (426)
Q Consensus 326 v~~mi~~lD~d~~G~I~~~EFl~~~~~~~----~----~~l~~aF~vfD~nG~~~s~~~ 376 (426)
++++.+.+|.|++|.|+.+||...+.... . ..+...|+.+|.|++|..+.+
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~ 60 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFD 60 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHH
Confidence 67889999999999999999988765431 1 245566999999999886543
No 66
>KOG2871|consensus
Probab=93.90 E-value=0.0023 Score=65.46 Aligned_cols=245 Identities=12% Similarity=0.077 Sum_probs=131.9
Q ss_pred CCCCCcCCHHHHHHHHHhhcCCcccccccccccc-ceeecCC---CCcceEecCCCcceehHHHHHHHHHHHhhcCCCCC
Q psy17548 4 AGSSSSITPNVLSDIVRVCWGTNVKEDIFVRWTQ-GFQFSLD---EPTALVQYEGGPCAVLAPAQAFILKYIIQNVDPVN 79 (426)
Q Consensus 4 ~~~s~pi~~~~a~~l~~llfG~~~~~~~~~~W~Q-gF~F~~~---~~~~LvQ~~gGPcgVlA~VQA~vlk~lLF~~~~~~ 79 (426)
|...+|++...|.-.+...|+-+.- .++.+|.| .|.|... ..|.++-...--+ +.-++|.|+|+|+||.+....
T Consensus 36 t~lvq~eggpcavia~vqafllk~i-lm~~e~~~~s~~~g~~~~el~~h~lsd~~~s~-~~~~~~~~~Lv~lL~g~tte~ 113 (449)
T KOG2871|consen 36 TALVQPEGGPCAVIAPVQAFLLKAI-LMRAEWLQTSFCSGAPKEELLYHLLSDILASR-LCSVVQGYVLVYLLRGRTTEE 113 (449)
T ss_pred ccccccCCCceeeehhHHHHHHHHH-hcCccccccccccCchHHHHHHHhhhhHhHhh-hhhhccceEEEEeeccCchhh
Confidence 3455788888888888888887652 34569987 7877654 2355544333332 566799999999999765432
Q ss_pred -Ccc---CCCCHHHHHHHHHHHHHHHHHhhcCCCceEEEEec--C-CcCCCCCCCcccceeeEEEEecCCHHHHHH----
Q psy17548 80 -DNW---RTIEQEDQNKLLVHAVVEMLKQAVDSNTFHIVYID--A-TEASSPDYSFDQFHSQIKVQSCSSCDEVEQ---- 148 (426)
Q Consensus 80 -~~~---~~~~~~~q~~~L~~Al~~IL~~a~~~~~~~vv~~~--~-~~~~~~~~~~d~~~e~l~~~~~~~~~~l~~---- 148 (426)
.++ ..-+.+++++||..|.-+|.....++-++.-+... . ...++..|..+-.++ ++++.+.--+--
T Consensus 114 ~ASlt~~~~~SS~q~eeA~~s~~L~ie~~~~~~ls~~~~~~~l~~~~f~~~a~~~~~~~~~---~~~~~~t~GvLLFLyS 190 (449)
T KOG2871|consen 114 VASLTGPLAASSDQVEEALFSAALEIERTISDKLSVTMFHPSLDEVFFDHSACYFHDSVTE---YFTEEETPGVLLFLYS 190 (449)
T ss_pred hhhccCccccchHHHHHHHHhcchhhhhhhhcccCHHHHhHhhhheeccchHHHHHHHHHH---HHhhhcccchHHHHHH
Confidence 122 23456889999888888888644332211111000 0 001111111111111 111111111111
Q ss_pred -HHHHhhHh------------hhcc--cchHHHHHHHHHhhhHHHHH-hhcCCCCCCCccCCCCcchHhhhhhhhccccc
Q psy17548 149 -FYNQRIDL------------LYNR--FGVLLFLYSVLYSKGLARLR-LEVSDITEPLIDREFGYGSQSLINLMITGRAV 212 (426)
Q Consensus 149 -~l~~~~~~------------f~~~--~GvllfLySvilSRgi~~v~-~dmd~~~~~Li~~~~G~~sqelvNLlLtGrAv 212 (426)
+|.+-+.. .+.+ +|-..++-=++--|-+.+|- .+||.....| +|-|-|.-|- +||+--.
T Consensus 191 alLTrgle~V~aDiddas~plits~~g~gsq~iVnLLLtGrAvpnV~dg~~dvggm~l----~gI~e~~dvg-fltlle~ 265 (449)
T KOG2871|consen 191 ALLTRGLEKVRADIDDASEPLITSSYGHGSQSIVNLLLTGRAVPNVWDGVVDVGGMKL----YGIPEQGDVG-FLTLLEL 265 (449)
T ss_pred HHHhhhHHHhhhccccCCCCcccCCCCcchHHHHHHHHccccccccccCccccCccee----eccccccchh-HHHHHHH
Confidence 12222222 2222 45554444444457777775 4555544433 4555554443 3332110
Q ss_pred cccccCccccCcceecCcccCcceeeeeecccc-CcccCCCCCCCCCCceEEEecCCceeEeeecccccc
Q psy17548 213 NYVFDHVQDIDGLQLQGINQQSQIGFLTLLEHL-RYCEVGSYLKNPINPVWVLGSETHLTVTFSFEKRLA 281 (426)
Q Consensus 213 snvfdg~~~~~~~~L~GI~~rs~iGfLt~~E~~-~~~~vGs~lK~P~~PiWv~~~~~h~~vlF~~~~~l~ 281 (426)
+|= +.|| -.+ +--++++.+++|.+|+|+-.++.|+.+-|.++.++.
T Consensus 266 ---l~~---------------ckvg-----s~lk~pr~Piwv~gSeth~tvlfs~d~~l~~~~~~s~q~r 312 (449)
T KOG2871|consen 266 ---LRY---------------CKVG-----SALKQPRQPIWVLGSETHLTVLFSCDGHLVVPENPSEQLR 312 (449)
T ss_pred ---HHH---------------HHHH-----HhhcCCCCceeEecCCCceEEEEecCccccCCCCCCHHHH
Confidence 000 0000 011 234789999999999999999999999999988775
No 67
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=93.89 E-value=0.12 Score=41.67 Aligned_cols=65 Identities=15% Similarity=0.386 Sum_probs=53.7
Q ss_pred HHHHhhhhhcCCCCCccCHHHHHHHHHHc-CC-CCCHHHHHHHHHhcCCC----CCCeeehhHHHHHhhCCC
Q psy17548 289 KARRVFKMFDPDGNNFIASDHLQNLLAKL-DL-VSDINYVDIMRKKLDPD----ELGIILLSAFMDEFFGDP 354 (426)
Q Consensus 289 ~~~raF~~fD~dg~G~Is~~eL~~vL~~L-G~-~~t~eev~~mi~~lD~d----~~G~I~~~EFl~~~~~~~ 354 (426)
+++.+|..|-. +.+.|+.++|...|+.- |. ..+.+++..++.++.++ ..+.+++++|...++..+
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 47889999955 89999999999999764 44 45899999999998655 479999999999888653
No 68
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=93.82 E-value=0.073 Score=39.07 Aligned_cols=30 Identities=27% Similarity=0.725 Sum_probs=27.4
Q ss_pred HHHHHHhhhhhcCCCCCccCHHHHHHHHHH
Q psy17548 287 ADKARRVFKMFDPDGNNFIASDHLQNLLAK 316 (426)
Q Consensus 287 ~~~~~raF~~fD~dg~G~Is~~eL~~vL~~ 316 (426)
.++++.+|..+|.|++|+|+.+|+..+|+.
T Consensus 24 ~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 24 EEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 357999999999999999999999999875
No 69
>KOG2643|consensus
Probab=93.36 E-value=0.26 Score=51.84 Aligned_cols=62 Identities=23% Similarity=0.331 Sum_probs=48.4
Q ss_pred hHHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCCCCeeehhHHHH
Q psy17548 286 SADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDI---NYVDIMRKKLDPDELGIILLSAFMD 348 (426)
Q Consensus 286 ~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~---eev~~mi~~lD~d~~G~I~~~EFl~ 348 (426)
+.+-++-.|..||+..+|.|+..++..+|-..-...++ -++++..++++.++-| |+++||.+
T Consensus 316 q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~g-ISl~Ef~~ 380 (489)
T KOG2643|consen 316 QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGKG-ISLQEFKA 380 (489)
T ss_pred HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCCC-cCHHHHHH
Confidence 45667888999999999999999999988776543333 3678888888877444 88888875
No 70
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=93.23 E-value=0.12 Score=34.04 Aligned_cols=27 Identities=19% Similarity=0.086 Sum_probs=22.3
Q ss_pred HHHHHHHhcCCCCCCeeehhHHHHHhh
Q psy17548 325 YVDIMRKKLDPDELGIILLSAFMDEFF 351 (426)
Q Consensus 325 ev~~mi~~lD~d~~G~I~~~EFl~~~~ 351 (426)
+++.+.+.+|.|++|.|+++||.+.+.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 467788999999999999999988653
No 71
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=93.08 E-value=0.048 Score=47.60 Aligned_cols=55 Identities=13% Similarity=0.034 Sum_probs=44.2
Q ss_pred CHHHHHHHHHhcCCCCCCeeehhHHHHHhhCCCCCCccccceeeccCCCCCCCcc
Q psy17548 322 DINYVDIMRKKLDPDELGIILLSAFMDEFFGDPEKPPPDMFDIFHYNGLARSNYE 376 (426)
Q Consensus 322 t~eev~~mi~~lD~d~~G~I~~~EFl~~~~~~~~~~l~~aF~vfD~nG~~~s~~~ 376 (426)
-.+++.-+...+|.|+||.|+.+|.....+...+..+.+.|+.+|.|++++++.+
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~l~~~e~~~~~f~~~~D~n~Dg~IS~~ 100 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIRLDPNEHCIKPFFESCDLDKDGSISLD 100 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHHccchHHHHHHHHHHHCCCCCCCCCHH
Confidence 3567888999999999999999999876533233456678999999999987765
No 72
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=92.45 E-value=0.14 Score=30.90 Aligned_cols=27 Identities=22% Similarity=0.156 Sum_probs=23.1
Q ss_pred HHHHHHHhcCCCCCCeeehhHHHHHhh
Q psy17548 325 YVDIMRKKLDPDELGIILLSAFMDEFF 351 (426)
Q Consensus 325 ev~~mi~~lD~d~~G~I~~~EFl~~~~ 351 (426)
+++.+++.+|.+++|.|+++||...+.
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 367788999999999999999988653
No 73
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=91.62 E-value=0.043 Score=39.31 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=37.5
Q ss_pred HHHHHHhcCCCCCCeeehhHHHHHhhCC----CCCCccccceeeccCCCCCCC
Q psy17548 326 VDIMRKKLDPDELGIILLSAFMDEFFGD----PEKPPPDMFDIFHYNGLARSN 374 (426)
Q Consensus 326 v~~mi~~lD~d~~G~I~~~EFl~~~~~~----~~~~l~~aF~vfD~nG~~~s~ 374 (426)
+..+.+.+|.+++|.|+++||...+... ....+...|+.+|.|+.+..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 54 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKID 54 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEe
Confidence 5667888999999999999998876532 234567789999988776543
No 74
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=90.90 E-value=0.082 Score=39.87 Aligned_cols=50 Identities=20% Similarity=0.222 Sum_probs=38.9
Q ss_pred HHHHHhcCCCCCCeeehhHHHHHhhCC--CCCCccccceeeccCCCCCCCcc
Q psy17548 327 DIMRKKLDPDELGIILLSAFMDEFFGD--PEKPPPDMFDIFHYNGLARSNYE 376 (426)
Q Consensus 327 ~~mi~~lD~d~~G~I~~~EFl~~~~~~--~~~~l~~aF~vfD~nG~~~s~~~ 376 (426)
+.+.+.+|.|++|.|+.+|+...+... .++++.+.|+.+|.|+.++.+..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ 53 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKE 53 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHH
Confidence 356778999999999999998876432 34567888999999988876544
No 75
>KOG0042|consensus
Probab=90.54 E-value=0.33 Score=52.68 Aligned_cols=65 Identities=15% Similarity=0.215 Sum_probs=60.0
Q ss_pred HHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhhC
Q psy17548 288 DKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFFG 352 (426)
Q Consensus 288 ~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~~ 352 (426)
...+..|..+|.|+.|+++.++...+|+..+...+++.+.+...+.|.+-+|.+...||.+.+..
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 44568999999999999999999999999999999999999999999999999999999998764
No 76
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=89.99 E-value=0.12 Score=41.14 Aligned_cols=56 Identities=16% Similarity=0.425 Sum_probs=40.0
Q ss_pred HHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCC----C---CCCeeehhHHHHHhh
Q psy17548 288 DKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDP----D---ELGIILLSAFMDEFF 351 (426)
Q Consensus 288 ~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~----d---~~G~I~~~EFl~~~~ 351 (426)
++++++|+.. .++.+||+.++|++.|- +++++-+++.+.+ + ..|-.+|..|++.++
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~-------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~l~ 68 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLT-------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNSLF 68 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHHHCCCT
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcC-------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHHHh
Confidence 5899999999 88999999999999852 3334444444432 2 237799999977543
No 77
>KOG0038|consensus
Probab=89.91 E-value=0.2 Score=45.64 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=37.5
Q ss_pred HHHHHhcCCCCCCeeehhHHHHHhhC--CC-CC--CccccceeeccCCCCCCCcc
Q psy17548 327 DIMRKKLDPDELGIILLSAFMDEFFG--DP-EK--PPPDMFDIFHYNGLARSNYE 376 (426)
Q Consensus 327 ~~mi~~lD~d~~G~I~~~EFl~~~~~--~~-~~--~l~~aF~vfD~nG~~~s~~~ 376 (426)
+++...+-.||.|-++|++|++++.- ++ .. ...-||++||+||+..+...
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~ 128 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHD 128 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHH
Confidence 45566677899999999999998652 21 12 35578999999999876544
No 78
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=89.83 E-value=0.26 Score=51.56 Aligned_cols=60 Identities=20% Similarity=0.204 Sum_probs=47.2
Q ss_pred HHHHHHHHH-----cCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhhCCCCCCccccceeeccCCCCCCCcc
Q psy17548 308 DHLQNLLAK-----LDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFFGDPEKPPPDMFDIFHYNGLARSNYE 376 (426)
Q Consensus 308 ~eL~~vL~~-----LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~~~~~~~l~~aF~vfD~nG~~~s~~~ 376 (426)
..|..+++. .|...-+.++..+++.+|.|++|.|+.+||+. ....|+.+|.||+|+.+..
T Consensus 313 ~~L~~~i~~~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~---------~~~~F~~~D~d~DG~Is~e 377 (391)
T PRK12309 313 ETLEKLLAHRLARLEGGEAFTHAAQEIFRLYDLDGDGFITREEWLG---------SDAVFDALDLNHDGKITPE 377 (391)
T ss_pred HHHHHHHHHHHHHhhccChhhHHHHHHHHHhCCCCCCcCcHHHHHH---------HHHHHHHhCCCCCCCCcHH
Confidence 455555552 35566678999999999999999999999964 3567999999999986654
No 79
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=89.78 E-value=0.21 Score=41.21 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=36.9
Q ss_pred HHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHH
Q psy17548 288 DKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIM 329 (426)
Q Consensus 288 ~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~m 329 (426)
++++++|+.+|.+++|.|+.+|+..+|..+++-+.+.+++.|
T Consensus 51 ~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~~~~~~~~~~~ 92 (94)
T cd05031 51 MAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSIACEEYYVKHM 92 (94)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 578899999999999999999999999999887777766655
No 80
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=89.67 E-value=0.17 Score=41.98 Aligned_cols=52 Identities=8% Similarity=0.147 Sum_probs=41.7
Q ss_pred HHHHHHHhcCCCCCCeeehhHHHHHhhCC--CCCCccccceeeccCCCCCCCcc
Q psy17548 325 YVDIMRKKLDPDELGIILLSAFMDEFFGD--PEKPPPDMFDIFHYNGLARSNYE 376 (426)
Q Consensus 325 ev~~mi~~lD~d~~G~I~~~EFl~~~~~~--~~~~l~~aF~vfD~nG~~~s~~~ 376 (426)
++....+.+|.|++|.|+++|+...+... .++++.+.|+.+|.|+.+..+-+
T Consensus 11 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~ 64 (96)
T smart00027 11 KYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKD 64 (96)
T ss_pred HHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHH
Confidence 45667788999999999999998876432 24568889999999988887766
No 81
>KOG0751|consensus
Probab=89.38 E-value=0.095 Score=55.76 Aligned_cols=85 Identities=11% Similarity=0.128 Sum_probs=64.1
Q ss_pred HHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCH------HHHHHHHHhcCCCCCCeeehhHHHHHhhCCCCCCccccc
Q psy17548 289 KARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDI------NYVDIMRKKLDPDELGIILLSAFMDEFFGDPEKPPPDMF 362 (426)
Q Consensus 289 ~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~------eev~~mi~~lD~d~~G~I~~~EFl~~~~~~~~~~l~~aF 362 (426)
..+.+|++||+.++|.++.++.+++...+.+..++ +-++. .+..+..-.++|.||.+.+..-..+.-+++|
T Consensus 109 l~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~---~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qaf 185 (694)
T KOG0751|consen 109 LFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKL---HFGDIRKRHLNYAEFTQFLHEFQLEHAEQAF 185 (694)
T ss_pred HHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHH---HhhhHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999998764432 33333 3333445568899998876644344578999
Q ss_pred eeeccCCCCCCCcc
Q psy17548 363 DIFHYNGLARSNYE 376 (426)
Q Consensus 363 ~vfD~nG~~~s~~~ 376 (426)
+..|.+|++..++-
T Consensus 186 r~~d~~~ng~is~L 199 (694)
T KOG0751|consen 186 REKDKAKNGFISVL 199 (694)
T ss_pred HHhcccCCCeeeee
Confidence 99999999885543
No 82
>KOG2562|consensus
Probab=89.35 E-value=0.76 Score=48.75 Aligned_cols=86 Identities=14% Similarity=0.141 Sum_probs=64.7
Q ss_pred HHHHh---hhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHH----hcCCCCCCeeehhHHHHHhhCCC----CCC
Q psy17548 289 KARRV---FKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRK----KLDPDELGIILLSAFMDEFFGDP----EKP 357 (426)
Q Consensus 289 ~~~ra---F~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~----~lD~d~~G~I~~~EFl~~~~~~~----~~~ 357 (426)
+...+ |-..|+|.||.|+.++|+.--. ..++.--++++.. ..-.-.+|.|+|++|+..++..+ ...
T Consensus 276 ~f~viy~kFweLD~Dhd~lidk~~L~ry~d---~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~S 352 (493)
T KOG2562|consen 276 HFYVIYCKFWELDTDHDGLIDKEDLKRYGD---HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPAS 352 (493)
T ss_pred HHHHHHHHHhhhccccccccCHHHHHHHhc---cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccc
Confidence 45555 6667999999999999876532 3345555678877 33456789999999999888654 245
Q ss_pred ccccceeeccCCCCCCCccc
Q psy17548 358 PPDMFDIFHYNGLARSNYER 377 (426)
Q Consensus 358 l~~aF~vfD~nG~~~s~~~~ 377 (426)
+.--|+..|-+|+|..+.+.
T Consensus 353 leYwFrclDld~~G~Lt~~e 372 (493)
T KOG2562|consen 353 LEYWFRCLDLDGDGILTLNE 372 (493)
T ss_pred hhhheeeeeccCCCcccHHH
Confidence 66779999999999988773
No 83
>KOG0751|consensus
Probab=88.58 E-value=0.41 Score=51.13 Aligned_cols=86 Identities=14% Similarity=0.273 Sum_probs=59.8
Q ss_pred HHHHHHhhhhh---cCCCCCccCHHHH-HHHHHHcCCCCCHHHHHHH-HHhcCCCCCCeeehhHHHHH--hhCCCCCCcc
Q psy17548 287 ADKARRVFKMF---DPDGNNFIASDHL-QNLLAKLDLVSDINYVDIM-RKKLDPDELGIILLSAFMDE--FFGDPEKPPP 359 (426)
Q Consensus 287 ~~~~~raF~~f---D~dg~G~Is~~eL-~~vL~~LG~~~t~eev~~m-i~~lD~d~~G~I~~~EFl~~--~~~~~~~~l~ 359 (426)
-++++.+|..| +.+|.-+++.+++ +.-+--+++.-..+++.++ -.-.|...||.|+|+||... ++-.++.-..
T Consensus 32 ~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~pDal~~ 111 (694)
T KOG0751|consen 32 PKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAPDALFE 111 (694)
T ss_pred hHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCchHHHH
Confidence 45788888777 5667778998876 4444445554444555444 44567889999999999764 2223445567
Q ss_pred ccceeeccCCCCC
Q psy17548 360 DMFDIFHYNGLAR 372 (426)
Q Consensus 360 ~aF~vfD~nG~~~ 372 (426)
.+|.+||++|.+.
T Consensus 112 ~aFqlFDr~~~~~ 124 (694)
T KOG0751|consen 112 VAFQLFDRLGNGE 124 (694)
T ss_pred HHHHHhcccCCCc
Confidence 8999999998876
No 84
>KOG2243|consensus
Probab=87.58 E-value=0.54 Score=55.18 Aligned_cols=58 Identities=22% Similarity=0.430 Sum_probs=51.3
Q ss_pred hhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhh
Q psy17548 293 VFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFF 351 (426)
Q Consensus 293 aF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~ 351 (426)
.|+.||+||.|.|+..++..+|..-. ..+..|++-++.....|.+...+|++|++.+.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 68999999999999999999997543 34678999999999999999999999998776
No 85
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=85.84 E-value=0.36 Score=39.62 Aligned_cols=54 Identities=7% Similarity=0.047 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcC-CCCCC-eeehhHHHHHhhC---C------CCCCccccceeeccCCCCCCCcc
Q psy17548 323 INYVDIMRKKLD-PDELG-IILLSAFMDEFFG---D------PEKPPPDMFDIFHYNGLARSNYE 376 (426)
Q Consensus 323 ~eev~~mi~~lD-~d~~G-~I~~~EFl~~~~~---~------~~~~l~~aF~vfD~nG~~~s~~~ 376 (426)
.+++.+..+.+| .+++| .|+.+||...+.. . .+.++.+.|+.+|.|+++..+.+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~ 72 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQ 72 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHH
Confidence 356788889997 99999 5999999887632 1 23468889999999998876654
No 86
>KOG4666|consensus
Probab=84.68 E-value=1.1 Score=45.74 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=52.0
Q ss_pred HHHHHHhhhhhcCCCCCccCHHHHHHHHHH-cCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhh
Q psy17548 287 ADKARRVFKMFDPDGNNFIASDHLQNLLAK-LDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFF 351 (426)
Q Consensus 287 ~~~~~raF~~fD~dg~G~Is~~eL~~vL~~-LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~ 351 (426)
...++-+|++|+.+.||.+...+|.-+|+. ||+. .=.+-.+...++...+|+|.|++|-+.+.
T Consensus 295 ~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~--~l~v~~lf~~i~q~d~~ki~~~~f~~fa~ 358 (412)
T KOG4666|consen 295 PVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVE--VLRVPVLFPSIEQKDDPKIYASNFRKFAA 358 (412)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhcCcc--eeeccccchhhhcccCcceeHHHHHHHHH
Confidence 357899999999999999999999999987 5642 22356678888999999999999987654
No 87
>KOG3866|consensus
Probab=83.96 E-value=1.3 Score=44.94 Aligned_cols=59 Identities=20% Similarity=0.475 Sum_probs=44.5
Q ss_pred HHhhhhhcCCCCCccCHHHHHHHHHH-c----CCCCCHHHHH-------H----HHHhcCCCCCCeeehhHHHHH
Q psy17548 291 RRVFKMFDPDGNNFIASDHLQNLLAK-L----DLVSDINYVD-------I----MRKKLDPDELGIILLSAFMDE 349 (426)
Q Consensus 291 ~raF~~fD~dg~G~Is~~eL~~vL~~-L----G~~~t~eev~-------~----mi~~lD~d~~G~I~~~EFl~~ 349 (426)
+--|.++|-++|||..-.||..++.. | +-.-++++.. + +|+.+|.|.|-.|+++||++.
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~ 321 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLND 321 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhh
Confidence 45789999999999999999988753 2 2222232222 2 377899999999999999874
No 88
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=83.18 E-value=0.48 Score=38.33 Aligned_cols=53 Identities=4% Similarity=0.031 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCC--CCCCeeehhHHHHHhhC---C------CCCCccccceeeccCCCCCCCcc
Q psy17548 324 NYVDIMRKKLDP--DELGIILLSAFMDEFFG---D------PEKPPPDMFDIFHYNGLARSNYE 376 (426)
Q Consensus 324 eev~~mi~~lD~--d~~G~I~~~EFl~~~~~---~------~~~~l~~aF~vfD~nG~~~s~~~ 376 (426)
+++......+|. |++|.|+.+||...+.. . .+.++.+.|+.+|.|+++..+.+
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~ 71 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQ 71 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHH
Confidence 456677888999 89999999999887632 1 13468888999999988876655
No 89
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=82.99 E-value=0.58 Score=38.63 Aligned_cols=53 Identities=4% Similarity=-0.001 Sum_probs=40.9
Q ss_pred HHHHHHHHhcC-CCCCC-eeehhHHHHHhhC-----C----CCCCccccceeeccCCCCCCCcc
Q psy17548 324 NYVDIMRKKLD-PDELG-IILLSAFMDEFFG-----D----PEKPPPDMFDIFHYNGLARSNYE 376 (426)
Q Consensus 324 eev~~mi~~lD-~d~~G-~I~~~EFl~~~~~-----~----~~~~l~~aF~vfD~nG~~~s~~~ 376 (426)
..+.+..+.+| .|++| .|+.+||..++.. . .+.++.+.++..|.||+++.+-.
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~ 71 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQ 71 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHH
Confidence 35677788998 79999 6999999887654 1 12458888999999998887655
No 90
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=82.96 E-value=0.61 Score=38.73 Aligned_cols=53 Identities=9% Similarity=0.004 Sum_probs=42.7
Q ss_pred HHHHHHHhcCC-CCCCeeehhHHHHHhhC-C----CC-CCccccceeeccCCCCCCCccc
Q psy17548 325 YVDIMRKKLDP-DELGIILLSAFMDEFFG-D----PE-KPPPDMFDIFHYNGLARSNYER 377 (426)
Q Consensus 325 ev~~mi~~lD~-d~~G~I~~~EFl~~~~~-~----~~-~~l~~aF~vfD~nG~~~s~~~~ 377 (426)
.+....+.+|. +++|.|+.+||..++.. . .+ .++.+.|+..|.||+++.+-..
T Consensus 9 ~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~E 68 (89)
T cd05022 9 TLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEE 68 (89)
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHH
Confidence 45677888999 99999999999887754 1 23 5688889999999999877653
No 91
>PLN02228 Phosphoinositide phospholipase C
Probab=82.36 E-value=6.3 Score=43.36 Aligned_cols=85 Identities=18% Similarity=0.364 Sum_probs=64.4
Q ss_pred CCceeEeeeccccccc-ccchHHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCC--CCCHHHHHHHHHhcCCC----CCC
Q psy17548 267 ETHLTVTFSFEKRLAC-LESSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDL--VSDINYVDIMRKKLDPD----ELG 339 (426)
Q Consensus 267 ~~h~~vlF~~~~~l~s-~e~~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~--~~t~eev~~mi~~lD~d----~~G 339 (426)
+.+|+|-||.-+...- ...+..+++++|..|-. ++.++.++|...|+...- ..+.+.++.++.++.+. ..|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~ 79 (567)
T PLN02228 2 SESFKVCFCCSRSFKEKTREPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHG 79 (567)
T ss_pred CccceEEEEeCCcCCcCCCCCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccC
Confidence 4689999887775542 22366799999999864 368999999999998643 24567889999988653 347
Q ss_pred eeehhHHHHHhhCC
Q psy17548 340 IILLSAFMDEFFGD 353 (426)
Q Consensus 340 ~I~~~EFl~~~~~~ 353 (426)
.++++.|...++..
T Consensus 80 ~~~~~gF~~yl~s~ 93 (567)
T PLN02228 80 LVHLNAFYRYLFSD 93 (567)
T ss_pred ccCHHHHHHHhcCc
Confidence 89999999988754
No 92
>KOG0035|consensus
Probab=80.94 E-value=3.1 Score=47.61 Aligned_cols=82 Identities=17% Similarity=0.092 Sum_probs=66.0
Q ss_pred HHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCH-----HHHHHHHHhcCCCCCCeeehhHHHHHhhCCC-----CC
Q psy17548 287 ADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDI-----NYVDIMRKKLDPDELGIILLSAFMDEFFGDP-----EK 356 (426)
Q Consensus 287 ~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~-----eev~~mi~~lD~d~~G~I~~~EFl~~~~~~~-----~~ 356 (426)
..+++..|.-||+...|.++.+++...|..+|....+ .+...++.+.|++..|.+.|.+|.+.|-.+. ..
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~~~ 825 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDTEL 825 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcHHH
Confidence 4679999999999999999999999999999998875 3567889999999999999999998776531 12
Q ss_pred CccccceeeccC
Q psy17548 357 PPPDMFDIFHYN 368 (426)
Q Consensus 357 ~l~~aF~vfD~n 368 (426)
.+..+|..+-++
T Consensus 826 r~i~s~~d~~kt 837 (890)
T KOG0035|consen 826 RAILAFEDWAKT 837 (890)
T ss_pred HHHHHHHHHHcc
Confidence 344556555433
No 93
>PLN02222 phosphoinositide phospholipase C 2
Probab=79.38 E-value=6.6 Score=43.35 Aligned_cols=85 Identities=19% Similarity=0.367 Sum_probs=63.9
Q ss_pred CCceeEeeecccccccc-cchHHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCC--CCCHHHHHHHHHhcCC-CCCCeee
Q psy17548 267 ETHLTVTFSFEKRLACL-ESSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDL--VSDINYVDIMRKKLDP-DELGIIL 342 (426)
Q Consensus 267 ~~h~~vlF~~~~~l~s~-e~~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~--~~t~eev~~mi~~lD~-d~~G~I~ 342 (426)
..+|.|-||..+...-. ..+..+++++|..|-. ++.++.++|...|+.-.- ..++++++.++++... ...+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~ 80 (581)
T PLN02222 3 KQTYKVCFCFRRRFRYTASEAPREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLH 80 (581)
T ss_pred ccceeEEEEeccccccccCCCcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcC
Confidence 46889998888755322 2244599999999853 479999999999998654 3467888999887642 3466799
Q ss_pred hhHHHHHhhCC
Q psy17548 343 LSAFMDEFFGD 353 (426)
Q Consensus 343 ~~EFl~~~~~~ 353 (426)
++.|...++..
T Consensus 81 ~~gF~~yL~s~ 91 (581)
T PLN02222 81 LDAFFKYLFGD 91 (581)
T ss_pred HHHHHHHhcCC
Confidence 99999988753
No 94
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=78.94 E-value=2.6 Score=31.70 Aligned_cols=31 Identities=16% Similarity=0.402 Sum_probs=26.8
Q ss_pred HHHHHHhhhhhcCCCCCccCHHHHHHHHHHc
Q psy17548 287 ADKARRVFKMFDPDGNNFIASDHLQNLLAKL 317 (426)
Q Consensus 287 ~~~~~raF~~fD~dg~G~Is~~eL~~vL~~L 317 (426)
.+-++..|+..|++++|.+..+|+....+.|
T Consensus 20 ~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 20 DEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 4578999999999999999999999988765
No 95
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=78.00 E-value=3.1 Score=34.48 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=28.2
Q ss_pred HHHHHhhhhhcCCCCCccCHHHHHHHHHHcC
Q psy17548 288 DKARRVFKMFDPDGNNFIASDHLQNLLAKLD 318 (426)
Q Consensus 288 ~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG 318 (426)
.++.++++.+|.|++|.|+-+|+..+|..|-
T Consensus 53 ~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 53 MLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 4788999999999999999999999998774
No 96
>PLN02230 phosphoinositide phospholipase C 4
Probab=75.73 E-value=10 Score=41.96 Aligned_cols=83 Identities=12% Similarity=0.213 Sum_probs=61.5
Q ss_pred ceeEeeecccccccc-cchHHHHHHhhhhhcCCCCCccCHHHHHHHHHHcC-C--CCCHHHHHHHHHhcCC-------CC
Q psy17548 269 HLTVTFSFEKRLACL-ESSADKARRVFKMFDPDGNNFIASDHLQNLLAKLD-L--VSDINYVDIMRKKLDP-------DE 337 (426)
Q Consensus 269 h~~vlF~~~~~l~s~-e~~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG-~--~~t~eev~~mi~~lD~-------d~ 337 (426)
+|.|-||..|..... ..+..+++++|..|-.++ ++++.++|...|++-. . ..+.++++.++.++-. -+
T Consensus 9 ~~~~~~~~~~~~~~~~~~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (598)
T PLN02230 9 SYKFCLIFTRKFRMTESGPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFT 87 (598)
T ss_pred cceEEEEecCccccccCCCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhcccccccc
Confidence 899999988866432 235679999999995444 8999999999999865 2 3467777777765421 23
Q ss_pred CCeeehhHHHHHhhC
Q psy17548 338 LGIILLSAFMDEFFG 352 (426)
Q Consensus 338 ~G~I~~~EFl~~~~~ 352 (426)
.+.++++.|...++.
T Consensus 88 ~~~~~~~~F~~yL~s 102 (598)
T PLN02230 88 RRNLTLDDFNYYLFS 102 (598)
T ss_pred ccccCHHHHHHHHcC
Confidence 456999999997765
No 97
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=74.66 E-value=12 Score=34.17 Aligned_cols=59 Identities=17% Similarity=0.279 Sum_probs=46.0
Q ss_pred HhhhhhcCCCCCccCHHHHHHHHHHcCC---CCCHHHHHHHHHhcCCCCCCeeehhHHHHHh
Q psy17548 292 RVFKMFDPDGNNFIASDHLQNLLAKLDL---VSDINYVDIMRKKLDPDELGIILLSAFMDEF 350 (426)
Q Consensus 292 raF~~fD~dg~G~Is~~eL~~vL~~LG~---~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~ 350 (426)
++|..|-..+...|+...+..+|+..|+ .++..+++-+..++-..+...|+|++|+..+
T Consensus 6 ~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL 67 (154)
T PF05517_consen 6 KAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEAL 67 (154)
T ss_dssp HHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHH
T ss_pred HHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHH
Confidence 4444445667789999999999999876 6788999999999887788889999998754
No 98
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=74.55 E-value=8.4 Score=36.08 Aligned_cols=66 Identities=17% Similarity=0.339 Sum_probs=47.3
Q ss_pred CcccCCCCCCCCCCceEEEecC--Cce--eEeeecccccccccchHHHHHHhhhhhcCCCCCccCHHHHHHHHHH
Q psy17548 246 RYCEVGSYLKNPINPVWVLGSE--THL--TVTFSFEKRLACLESSADKARRVFKMFDPDGNNFIASDHLQNLLAK 316 (426)
Q Consensus 246 ~~~~vGs~lK~P~~PiWv~~~~--~h~--~vlF~~~~~l~s~e~~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~ 316 (426)
.|.+..+.+..|.+||.|-+.. -|= |=-+-.+-+.+ -++.+++|..|++.+.+.++..|+.++++.
T Consensus 55 Sy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~YD~eGrFv-----p~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 55 SYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAYDTEGRFV-----PQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred CCccCCCCCCCCceeEEeecccccccCCCccccccCCcCC-----HHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 4555667899999999996521 121 11122333333 258999999999999999999999999987
No 99
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=74.54 E-value=4.1 Score=33.70 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=28.2
Q ss_pred HHHHHHhhhhhcCCCCCccCHHHHHHHHHHcC
Q psy17548 287 ADKARRVFKMFDPDGNNFIASDHLQNLLAKLD 318 (426)
Q Consensus 287 ~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG 318 (426)
..++.+.++.+|.|+||.|+-+|+-.+|..+.
T Consensus 51 ~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 51 PGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 35788899999999999999999999888764
No 100
>KOG0169|consensus
Probab=74.29 E-value=3.4 Score=46.39 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=60.7
Q ss_pred HHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhhC
Q psy17548 287 ADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFFG 352 (426)
Q Consensus 287 ~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~~ 352 (426)
..-+...|+..|++.+|.++..+..++++.++..+...++..+.++.|...++.+.+++|.+....
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~ 200 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKE 200 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHh
Confidence 346889999999999999999999999999999999999999999999999999999999887553
No 101
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=72.62 E-value=5.1 Score=32.98 Aligned_cols=32 Identities=9% Similarity=0.205 Sum_probs=28.3
Q ss_pred HHHHHHhhhhhcCCCCCccCHHHHHHHHHHcC
Q psy17548 287 ADKARRVFKMFDPDGNNFIASDHLQNLLAKLD 318 (426)
Q Consensus 287 ~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG 318 (426)
.+++.+.|+..|.|++|.|+.+|+-.+|..+.
T Consensus 50 ~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 50 DAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 35888999999999999999999998887764
No 102
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=72.28 E-value=5.1 Score=32.77 Aligned_cols=32 Identities=13% Similarity=0.317 Sum_probs=28.4
Q ss_pred HHHHHHhhhhhcCCCCCccCHHHHHHHHHHcC
Q psy17548 287 ADKARRVFKMFDPDGNNFIASDHLQNLLAKLD 318 (426)
Q Consensus 287 ~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG 318 (426)
.+++.++|+.+|.|++|.|+.+|+..+|..+.
T Consensus 50 ~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 50 QKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 46899999999999999999999999887664
No 103
>KOG1029|consensus
Probab=71.34 E-value=5 Score=45.29 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=52.7
Q ss_pred HHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhh
Q psy17548 287 ADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFF 351 (426)
Q Consensus 287 ~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~ 351 (426)
.-++++.|...|+...|+++...-+.+|-.-|+ +...+..+-.--|.|+||.++-+||+-.|+
T Consensus 194 klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~L--pq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 194 KLKYRQLFNALDKTRSGYLSGQQARSALGQSGL--PQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred hhHHHHHhhhcccccccccccHHHHHHHHhcCC--chhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 457899999999999999999999999877765 355666666667999999999999976443
No 104
>KOG2427|consensus
Probab=60.60 E-value=6.2 Score=41.27 Aligned_cols=52 Identities=23% Similarity=0.343 Sum_probs=36.4
Q ss_pred ceEecCCCcceehHHHHHHHHHHHhhcCCCCC-----CccCCCCHHHHHHHHHHHHHHHHHh
Q psy17548 48 ALVQYEGGPCAVLAPAQAFILKYIIQNVDPVN-----DNWRTIEQEDQNKLLVHAVVEMLKQ 104 (426)
Q Consensus 48 ~LvQ~~gGPcgVlA~VQA~vlk~lLF~~~~~~-----~~~~~~~~~~q~~~L~~Al~~IL~~ 104 (426)
-|.|.++|||.+||-.-+.+||..+ .+.... +.+.+++ ...|+.|++.+..+
T Consensus 29 IllQn~nGpCpLiAl~NvLilk~~~-~~~~~~~~~~~~~~~~lt----~~~l~~~~~~~~~k 85 (391)
T KOG2427|consen 29 ILLQNENGPCPLIALCNVLILKPNL-TRPSNYLLVSVNDLPNLT----LDELIEALAYNDEK 85 (391)
T ss_pred EEEecCCCCcchHHHhHHHhccccc-cccchhhhhhhhccchhh----HHHHHHhhhhhhcc
Confidence 4999999999999999999999985 333221 1222222 24577777777766
No 105
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=60.08 E-value=47 Score=27.86 Aligned_cols=63 Identities=21% Similarity=0.228 Sum_probs=41.2
Q ss_pred HHHHHhhhhhcCCCCCccCHHHHHHHHHH-------cCCCCC----HHHHHHHHHhcCCCCCCeeehhHHHHHhhCC
Q psy17548 288 DKARRVFKMFDPDGNNFIASDHLQNLLAK-------LDLVSD----INYVDIMRKKLDPDELGIILLSAFMDEFFGD 353 (426)
Q Consensus 288 ~~~~raF~~fD~dg~G~Is~~eL~~vL~~-------LG~~~t----~eev~~mi~~lD~d~~G~I~~~EFl~~~~~~ 353 (426)
+++|..|+.+ .|.+|.|+...|...|++ +|+..+ +..++...... .+.-.|.-++|++.+..+
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT-
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhC
Confidence 5899999999 889999999888888774 565443 44555555554 255679999999988765
No 106
>KOG1955|consensus
Probab=57.48 E-value=21 Score=38.67 Aligned_cols=63 Identities=25% Similarity=0.389 Sum_probs=52.8
Q ss_pred HHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhh
Q psy17548 287 ADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFF 351 (426)
Q Consensus 287 ~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~ 351 (426)
.+-+-+-|+..-+|-+|||+-..-+.++.+-.+ ..+|+.-|-.--|.|.||-++++||...|.
T Consensus 230 ReYYvnQFrtvQpDp~gfisGsaAknFFtKSkl--pi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 230 REYYVNQFRTVQPDPHGFISGSAAKNFFTKSKL--PIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHHhhhhcccCCcccccccHHHHhhhhhccC--chHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 345678899999999999999999998877544 467788888888999999999999998654
No 107
>KOG4251|consensus
Probab=55.84 E-value=17 Score=36.01 Aligned_cols=59 Identities=12% Similarity=0.316 Sum_probs=51.7
Q ss_pred HHHhh-hhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHH
Q psy17548 290 ARRVF-KMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMD 348 (426)
Q Consensus 290 ~~raF-~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~ 348 (426)
-++.| ...|.+.||..+.+||...+.-++......++..|+.--|.+++-.++.+|.+.
T Consensus 282 RkkEFeElIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 282 RKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLE 341 (362)
T ss_pred HHHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHH
Confidence 33444 456999999999999999998888888889999999999999999999999876
No 108
>KOG3555|consensus
Probab=52.69 E-value=9.3 Score=39.52 Aligned_cols=89 Identities=15% Similarity=0.064 Sum_probs=70.8
Q ss_pred HHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCC---CHHHHHHHHHhcCCCCCCeeehhHHHHHhhCCCCCCcccccee
Q psy17548 288 DKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVS---DINYVDIMRKKLDPDELGIILLSAFMDEFFGDPEKPPPDMFDI 364 (426)
Q Consensus 288 ~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~---t~eev~~mi~~lD~d~~G~I~~~EFl~~~~~~~~~~l~~aF~v 364 (426)
.+++.=|+..=.+.++.+....+..+-+.+...+ =.+++.=|+.++|.+.||.++..|.-.+.+.+.+.-++.-|+.
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldknE~CikpFfns 290 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDKNEACIKPFFNS 290 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhccCchhHHHHHHhh
Confidence 3678889999889888888888887766665432 3578999999999999999999998777666556667788888
Q ss_pred eccCCCCCCCcc
Q psy17548 365 FHYNGLARSNYE 376 (426)
Q Consensus 365 fD~nG~~~s~~~ 376 (426)
-|...+++++.+
T Consensus 291 CD~~kDg~iS~~ 302 (434)
T KOG3555|consen 291 CDTYKDGSISTN 302 (434)
T ss_pred hcccccCccccc
Confidence 888877775554
No 109
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=48.32 E-value=18 Score=30.99 Aligned_cols=32 Identities=9% Similarity=0.213 Sum_probs=27.6
Q ss_pred hHHHHHHhhhhhcCCCCCccCHHHHHHHHHHc
Q psy17548 286 SADKARRVFKMFDPDGNNFIASDHLQNLLAKL 317 (426)
Q Consensus 286 ~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~L 317 (426)
+.+.+.++|++-|.|++|+++.+|+--+|.-.
T Consensus 41 ~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 41 PRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp SHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 45689999999999999999999999988754
No 110
>PLN02223 phosphoinositide phospholipase C
Probab=47.22 E-value=46 Score=36.50 Aligned_cols=67 Identities=16% Similarity=0.159 Sum_probs=50.4
Q ss_pred hHHHHHHhhhhhcCCCCCccCHHHHHHHHHHc----C-CCCCHHHHHHHHHhcCCC--------CCCeeehhHHHHHhhC
Q psy17548 286 SADKARRVFKMFDPDGNNFIASDHLQNLLAKL----D-LVSDINYVDIMRKKLDPD--------ELGIILLSAFMDEFFG 352 (426)
Q Consensus 286 ~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~L----G-~~~t~eev~~mi~~lD~d--------~~G~I~~~EFl~~~~~ 352 (426)
+-+.++++|..| .+++|.++.+.|.+.|+-| | ...+.++++.+++++-.. ..+.++++.|...++.
T Consensus 14 ~p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 446899999999 4888999999999999444 3 245677888887765332 2366999999998876
Q ss_pred C
Q psy17548 353 D 353 (426)
Q Consensus 353 ~ 353 (426)
.
T Consensus 93 ~ 93 (537)
T PLN02223 93 T 93 (537)
T ss_pred c
Confidence 4
No 111
>KOG4666|consensus
Probab=45.32 E-value=37 Score=35.04 Aligned_cols=114 Identities=19% Similarity=0.122 Sum_probs=78.4
Q ss_pred cCcccCCCCCCCCCCceEEEecCCceeEeeecccccccccchHHHHHHhhhhhcCCCCCccCHHHHHHHHHHc-CCCCCH
Q psy17548 245 LRYCEVGSYLKNPINPVWVLGSETHLTVTFSFEKRLACLESSADKARRVFKMFDPDGNNFIASDHLQNLLAKL-DLVSDI 323 (426)
Q Consensus 245 ~~~~~vGs~lK~P~~PiWv~~~~~h~~vlF~~~~~l~s~e~~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~L-G~~~t~ 323 (426)
++|..|-+.-|.|+.-| |=|+.+.++-.. ..++..|.+||..++|-++-.|--..+.-| |-..++
T Consensus 230 d~y~~var~~kg~~igi----------~efa~~l~vpvs----d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~ 295 (412)
T KOG4666|consen 230 DGYVYVAREAKGPDIGI----------VEFAVNLRVPVS----DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTP 295 (412)
T ss_pred hhHHHHHHhccCCCcce----------eEeeeeeecchh----hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcH
Confidence 35778888889999876 567777766322 478999999999999999876655555443 445567
Q ss_pred HHHHHHHHhcCCCCCCeeehhHHHHH---hhCCCCCCccccceeeccCCCCC
Q psy17548 324 NYVDIMRKKLDPDELGIILLSAFMDE---FFGDPEKPPPDMFDIFHYNGLAR 372 (426)
Q Consensus 324 eev~~mi~~lD~d~~G~I~~~EFl~~---~~~~~~~~l~~aF~vfD~nG~~~ 372 (426)
+-++.-.+.++.+-||++.=.+|--+ .+.-+.-.++..|+-.+..-+++
T Consensus 296 ~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l~v~~lf~~i~q~d~~k 347 (412)
T KOG4666|consen 296 VIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVLRVPVLFPSIEQKDDPK 347 (412)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhcCcceeeccccchhhhcccCcc
Confidence 77888899999999999998776332 22222223445555555443333
No 112
>KOG1707|consensus
Probab=43.95 E-value=17 Score=40.15 Aligned_cols=59 Identities=19% Similarity=0.299 Sum_probs=45.5
Q ss_pred HHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCC----CHHHHHHHHHhcCCCCCCeeehhHHHHHhh
Q psy17548 287 ADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVS----DINYVDIMRKKLDPDELGIILLSAFMDEFF 351 (426)
Q Consensus 287 ~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~----t~eev~~mi~~lD~d~~G~I~~~EFl~~~~ 351 (426)
.+.+...|..||.|+||-.+..||+++.+..+..+ ..++.- -.+..|.+.|.-|+..+.
T Consensus 314 ~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t------~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 314 YRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDST------VKNERGWLTLNGFLSQWS 376 (625)
T ss_pred HHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccc------eecccceeehhhHHHHHH
Confidence 46789999999999999999999999999987644 222211 123679999999987543
No 113
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=43.05 E-value=51 Score=26.01 Aligned_cols=42 Identities=10% Similarity=0.149 Sum_probs=33.6
Q ss_pred HHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q psy17548 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKL 333 (426)
Q Consensus 291 ~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~l 333 (426)
++-|+.+=+ .|--|+.+.++..+..+|.++++..++.+++.+
T Consensus 19 r~~~~k~l~-~NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 19 RKYMEKQLK-ENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred HHHHHHHHH-HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 444554443 356799999999999999999999999998764
No 114
>KOG2562|consensus
Probab=42.66 E-value=20 Score=38.44 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=50.7
Q ss_pred HHHHhhh----hhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHH
Q psy17548 289 KARRVFK----MFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAF 346 (426)
Q Consensus 289 ~~~raF~----~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EF 346 (426)
-+.|+|. .+=.-.+|.|+.+++-..+-++--+.++.-++-..+-+|.+++|+++-+|.
T Consensus 312 ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el 373 (493)
T KOG2562|consen 312 IVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNEL 373 (493)
T ss_pred HHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHH
Confidence 4688998 344457899999999999999998989999999999999999999998883
No 115
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=41.80 E-value=14 Score=38.02 Aligned_cols=94 Identities=11% Similarity=0.188 Sum_probs=60.5
Q ss_pred eecccccccccchHHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhhCC
Q psy17548 274 FSFEKRLACLESSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFFGD 353 (426)
Q Consensus 274 F~~~~~l~s~e~~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~~~ 353 (426)
|++.-++...+.+.+.+...|+ -|.+...|+..+|+.+....+....-.+-++-+.+..-.+=+|.++|.|.-+.+..
T Consensus 30 ~~~~id~s~~~~e~~A~l~Efr-~DyNr~HF~R~~eF~~~~~~l~~~~r~~FidFLerSctaEFSGflLYKEl~rrlk~- 107 (357)
T PLN02508 30 FNTEINKNLDMAEFEALLQEFK-TDYNQTHFVRNEEFKAAADKIQGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKK- 107 (357)
T ss_pred ccccCCCchhHHHHHHHHHHHH-hCccccccccChhhccchhhCCHHHHHHHHHHHHhhhhhhcccchHHHHHHHhccc-
Confidence 3333344333333334444443 37888999999999887776643333456677777788899999999997655432
Q ss_pred CCCCccccceeeccCC
Q psy17548 354 PEKPPPDMFDIFHYNG 369 (426)
Q Consensus 354 ~~~~l~~aF~vfD~nG 369 (426)
....+.+.|.++-+|-
T Consensus 108 ~nP~lae~F~lMaRDE 123 (357)
T PLN02508 108 TNPVVAEIFTLMSRDE 123 (357)
T ss_pred CChHHHHHHHHhCchh
Confidence 2356777787776653
No 116
>KOG4578|consensus
Probab=41.02 E-value=22 Score=36.64 Aligned_cols=63 Identities=17% Similarity=0.046 Sum_probs=47.6
Q ss_pred HHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCH-HHHHHHHHhcCCCCCCeeehhHHHHHhh
Q psy17548 289 KARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDI-NYVDIMRKKLDPDELGIILLSAFMDEFF 351 (426)
Q Consensus 289 ~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~-eev~~mi~~lD~d~~G~I~~~EFl~~~~ 351 (426)
.+.=-|...|++.|+-|...|.+.+-+-|-..... .=.+.|.+..|.|+|-.|+++|++.-+.
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 34456999999999999999987665554433333 3357888889999999999999877554
No 117
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=37.00 E-value=44 Score=28.06 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=28.2
Q ss_pred HHHHHhhhhhcCCCCCccCHHHHHHHHHHcCC
Q psy17548 288 DKARRVFKMFDPDGNNFIASDHLQNLLAKLDL 319 (426)
Q Consensus 288 ~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~ 319 (426)
..+.++|+..|.|+||.|+-.|+-.++..|..
T Consensus 48 ~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~ 79 (91)
T cd05024 48 MAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLI 79 (91)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 46889999999999999999999998877654
No 118
>PF12896 Apc4: Anaphase-promoting complex, cyclosome, subunit 4; InterPro: IPR024790 Apc4 is one of the larger of the subunits of the anaphase-promoting complex (APC) or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes [, ]. Results in Caenorhabditis elegans show that the primary essential role of the spindle assembly checkpoint is not in the chromosome segregation process itself but rather in delaying anaphase onset until all chromosomes are properly attached to the spindle. The APC is likely to be required for all metaphase-to-anaphase transitions in a multicellular organism []. This entry represents the long domain downstream of the WD40 repeat/s that are present on the Apc4 subunits.
Probab=36.63 E-value=37 Score=31.86 Aligned_cols=67 Identities=18% Similarity=0.273 Sum_probs=44.5
Q ss_pred cCCHHHHHHHHHHhhHhhhcccchHHHHHHHHHhhhHHHHHhhcCCCCCCCccCCCCcchHhhhhhhhccccccccc
Q psy17548 140 CSSCDEVEQFYNQRIDLLYNRFGVLLFLYSVLYSKGLARLRLEVSDITEPLIDREFGYGSQSLINLMITGRAVNYVF 216 (426)
Q Consensus 140 ~~~~~~l~~~l~~~~~~f~~~~GvllfLySvilSRgi~~v~~dmd~~~~~Li~~~~G~~sqelvNLlLtGrAvsnvf 216 (426)
++.+..+..++.+++........-..-.+ .|-+.++.+++.+. +..+-..++|.+|++||.+.+.+-
T Consensus 26 ~~~i~~ll~yi~~~l~~i~~~w~~~~~~~----~~~l~~~~~~l~~~------~~~~~~~~el~~lLltG~~s~~l~ 92 (210)
T PF12896_consen 26 SSQIQSLLRYIKDTLDAIQEEWEEALQEF----DRKLTNLADELQEK------GGEGSLQDELLDLLLTGHASPALK 92 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhc------CCCCcHHHHHHHHHHhcCCCHHHH
Confidence 45677788888888877665432211111 56666666655442 245666899999999999999763
No 119
>PRK00523 hypothetical protein; Provisional
Probab=36.02 E-value=57 Score=26.33 Aligned_cols=42 Identities=10% Similarity=0.182 Sum_probs=34.1
Q ss_pred HHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q psy17548 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKL 333 (426)
Q Consensus 291 ~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~l 333 (426)
++-|+.+=+ .|--|+.+-++..+..+|.++++..++.+++.+
T Consensus 27 rk~~~k~l~-~NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 27 KKMFKKQIR-ENPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred HHHHHHHHH-HCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 445555443 356799999999999999999999999998876
No 120
>KOG3077|consensus
Probab=34.78 E-value=82 Score=31.45 Aligned_cols=67 Identities=19% Similarity=0.348 Sum_probs=53.7
Q ss_pred hHHHHHHhhhhh-cCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhhC
Q psy17548 286 SADKARRVFKMF-DPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFFG 352 (426)
Q Consensus 286 ~~~~~~raF~~f-D~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~~ 352 (426)
.+.++.+.|..| |++.+..|-.+-+..+.++||+.+++-.+--+-=+++.-.-|..+-.||+.-+..
T Consensus 62 s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~ 129 (260)
T KOG3077|consen 62 SEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTA 129 (260)
T ss_pred cHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHH
Confidence 355777778776 7888889999999999999999876655555556788888899999999886553
No 121
>PF14658 EF-hand_9: EF-hand domain
Probab=33.45 E-value=58 Score=25.79 Aligned_cols=31 Identities=13% Similarity=0.378 Sum_probs=27.2
Q ss_pred hHHHHHHhhhhhcCCCC-CccCHHHHHHHHHH
Q psy17548 286 SADKARRVFKMFDPDGN-NFIASDHLQNLLAK 316 (426)
Q Consensus 286 ~~~~~~raF~~fD~dg~-G~Is~~eL~~vL~~ 316 (426)
+..+++..-+.+|++|. |.|..+.+-.+|+.
T Consensus 33 ~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 33 EESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 34588999999999987 99999999999975
No 122
>KOG1707|consensus
Probab=32.78 E-value=72 Score=35.42 Aligned_cols=173 Identities=17% Similarity=0.257 Sum_probs=91.9
Q ss_pred EEEecCCHHHHHHHHHHhhHhhhcccchHHHHHHHHHhhhHHHHHhhcCCCCCCCccCCCCcchHhhhhhhhcccccccc
Q psy17548 136 KVQSCSSCDEVEQFYNQRIDLLYNRFGVLLFLYSVLYSKGLARLRLEVSDITEPLIDREFGYGSQSLINLMITGRAVNYV 215 (426)
Q Consensus 136 ~~~~~~~~~~l~~~l~~~~~~f~~~~GvllfLySvilSRgi~~v~~dmd~~~~~Li~~~~G~~sqelvNLlLtGrAvsnv 215 (426)
.+....+-.+-+..+..-+. ...|++++||+===-++|+|+.= =-|||...+|-.- =+=.+|+|--+-+.
T Consensus 59 ~ivD~ss~~~~~~~l~~Eir----kA~vi~lvyavd~~~T~D~ist~----WLPlir~~~~~~~--~~PVILvGNK~d~~ 128 (625)
T KOG1707|consen 59 SIVDTSSDSDDRLCLRKEIR----KADVICLVYAVDDESTVDRISTK----WLPLIRQLFGDYH--ETPVILVGNKSDNG 128 (625)
T ss_pred EEEecccccchhHHHHHHHh----hcCEEEEEEecCChHHhhhhhhh----hhhhhhcccCCCc--cCCEEEEeeccCCc
Confidence 34444444444444444443 26777788874322344444321 1245543333211 12245677777776
Q ss_pred ccCccccCc------ceecCcccCcceeeeeec---cccCcccCCCCCCCCCCceEEEecCCceeEeeecccccccccch
Q psy17548 216 FDHVQDIDG------LQLQGINQQSQIGFLTLL---EHLRYCEVGSYLKNPINPVWVLGSETHLTVTFSFEKRLACLESS 286 (426)
Q Consensus 216 fdg~~~~~~------~~L~GI~~rs~iGfLt~~---E~~~~~~vGs~lK~P~~PiWv~~~~~h~~vlF~~~~~l~s~e~~ 286 (426)
++....+.. ..-+-|..--.+-=+++. |-+.|||-- .-+|..|.| ..+.+-+.+ ..
T Consensus 129 ~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqKa--VihPt~PLy------------da~~qelkp-~~ 193 (625)
T KOG1707|consen 129 DNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSELFYYAQKA--VIHPTSPLY------------DAEEQELKP-RC 193 (625)
T ss_pred cccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhhe--eeccCcccc------------ccccccccH-HH
Confidence 655541111 122233333333333332 444455532 235666644 433333322 13
Q ss_pred HHHHHHhhhhhcCCCCCccCHHHHHHHHHH-cCCCCCHHHHHHHHHhc
Q psy17548 287 ADKARRVFKMFDPDGNNFIASDHLQNLLAK-LDLVSDINYVDIMRKKL 333 (426)
Q Consensus 287 ~~~~~raF~~fD~dg~G~Is~~eL~~vL~~-LG~~~t~eev~~mi~~l 333 (426)
+.-+.|+|++.|.|+||..+..||-..=+. +|.++...+++.+.+.+
T Consensus 194 v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv 241 (625)
T KOG1707|consen 194 VKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVV 241 (625)
T ss_pred HHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHH
Confidence 467899999999999999999999887665 67777776665555444
No 123
>KOG3555|consensus
Probab=32.69 E-value=44 Score=34.72 Aligned_cols=59 Identities=12% Similarity=0.132 Sum_probs=46.9
Q ss_pred HHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhh
Q psy17548 289 KARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFF 351 (426)
Q Consensus 289 ~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~ 351 (426)
.+.=.|...|.+.||+++..||+.+-.. -.+.=++.+++..|...||.|+-+|+..=|-
T Consensus 251 s~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~CikpFfnsCD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 251 SLGWMFNKLDTNYDLLLDQSELRAIELD----KNEACIKPFFNSCDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred hhhhhhhccccccccccCHHHhhhhhcc----CchhHHHHHHhhhcccccCccccchhhhhhc
Confidence 5666899999999999999998876432 2355678889999999999999999876443
No 124
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.50 E-value=77 Score=25.49 Aligned_cols=43 Identities=16% Similarity=0.239 Sum_probs=34.4
Q ss_pred HHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q psy17548 290 ARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKL 333 (426)
Q Consensus 290 ~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~l 333 (426)
.++.|+.+=+| |--|+.+-++..|..+|.++++..++++++.+
T Consensus 25 ark~~~k~lk~-NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 25 ARKQMKKQLKD-NPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred HHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 34555555444 56799999999999999999999999998765
No 125
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=31.17 E-value=21 Score=30.85 Aligned_cols=55 Identities=16% Similarity=0.029 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHhcCCCCCCeeehhHHHHHhhCC--CCCCccccceeeccCCCCCCCc
Q psy17548 321 SDINYVDIMRKKLDPDELGIILLSAFMDEFFGD--PEKPPPDMFDIFHYNGLARSNY 375 (426)
Q Consensus 321 ~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~~~--~~~~l~~aF~vfD~nG~~~s~~ 375 (426)
.....+.=+...+|.|+||.++-.|...+.... .+.-++.-|+.-|.|++++++.
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~ 107 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISL 107 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCH
Confidence 345677888999999999999999976554422 2233445567778888887543
No 126
>PF06618 DUF1148: Protein of unknown function (DUF1148); InterPro: IPR009529 This family consists of several Maize streak virus proteins of unknown function.
Probab=29.83 E-value=20 Score=29.81 Aligned_cols=21 Identities=48% Similarity=1.012 Sum_probs=16.9
Q ss_pred CCCCchhhhh---hcCCCCcEEec
Q psy17548 397 LETNPMLTCL---QTKWPSIELSW 417 (426)
Q Consensus 397 ~~~~~~~~~l---~tkw~~~~~~w 417 (426)
-.+..|.+|| |.|||++.+.|
T Consensus 59 lldvdmadclsrawnkwpgialtw 82 (114)
T PF06618_consen 59 LLDVDMADCLSRAWNKWPGIALTW 82 (114)
T ss_pred eeeccHHHHHHHHhccCCchhhhh
Confidence 3456688897 78999999988
No 127
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=29.83 E-value=59 Score=25.38 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=33.2
Q ss_pred CCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCC
Q psy17548 301 GNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDE 337 (426)
Q Consensus 301 g~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~ 337 (426)
.++-++..+|.+.|..-|...+++.+...++.+|.+|
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 4578999999999999999999999999999998776
No 128
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=29.63 E-value=1.2e+02 Score=26.43 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=43.1
Q ss_pred HHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHH
Q psy17548 290 ARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMD 348 (426)
Q Consensus 290 ~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~ 348 (426)
+--++-+.-.-|+..|+.++++.+|++.|..++++.+..+++.+.- .+.+|.+.
T Consensus 5 yvaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 5 YVAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 3445666666788889999999999999999999999999999853 35666654
No 129
>PRK01844 hypothetical protein; Provisional
Probab=29.61 E-value=82 Score=25.44 Aligned_cols=43 Identities=14% Similarity=0.205 Sum_probs=34.3
Q ss_pred HHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q psy17548 290 ARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKL 333 (426)
Q Consensus 290 ~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~l 333 (426)
.++-|+.+=++ |--|+.+-++..+..+|.++++..++.+++..
T Consensus 25 ark~~~k~lk~-NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 25 ARKYMMNYLQK-NPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred HHHHHHHHHHH-CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34455554433 56799999999999999999999999998876
No 130
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=28.50 E-value=53 Score=28.96 Aligned_cols=32 Identities=13% Similarity=0.215 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHhcCCCCCCeeehhHHHHHhhC
Q psy17548 321 SDINYVDIMRKKLDPDELGIILLSAFMDEFFG 352 (426)
Q Consensus 321 ~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~~ 352 (426)
+++|+.+.+=.++-.|..|.+.|-||+..|..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 57899999999999999999999999998874
No 131
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=27.04 E-value=1.4e+02 Score=25.77 Aligned_cols=53 Identities=9% Similarity=0.144 Sum_probs=42.4
Q ss_pred HHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHH
Q psy17548 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMD 348 (426)
Q Consensus 291 ~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~ 348 (426)
--+|-+...-|+..|+.++++.+|++-|..+++..+..+++.+.- .+.+|.+.
T Consensus 4 vaAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa 56 (109)
T cd05833 4 VAAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIA 56 (109)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 345556666788899999999999999999999999999988853 35566655
No 132
>PLN02952 phosphoinositide phospholipase C
Probab=26.81 E-value=1.8e+02 Score=32.54 Aligned_cols=83 Identities=13% Similarity=0.191 Sum_probs=54.6
Q ss_pred ceeEeeeccccccc-ccchHHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCC--CCCHHHHHHHHHhc----C---CCCC
Q psy17548 269 HLTVTFSFEKRLAC-LESSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDL--VSDINYVDIMRKKL----D---PDEL 338 (426)
Q Consensus 269 h~~vlF~~~~~l~s-~e~~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~--~~t~eev~~mi~~l----D---~d~~ 338 (426)
.|.+.++.-+.+.. .-.+..+++.+|..|-. +++.++.++|...|+.-.- ..+.++++.++.++ . ..+.
T Consensus 18 ~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~ 96 (599)
T PLN02952 18 NYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYTR 96 (599)
T ss_pred CHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccccc
Confidence 44444444444432 11245689999999965 4478999999999998543 35677777776543 1 1233
Q ss_pred CeeehhHHHHHhhC
Q psy17548 339 GIILLSAFMDEFFG 352 (426)
Q Consensus 339 G~I~~~EFl~~~~~ 352 (426)
+.++++.|...++.
T Consensus 97 ~~l~~~~F~~~l~s 110 (599)
T PLN02952 97 HGLNLDDFFHFLLY 110 (599)
T ss_pred cCcCHHHHHHHHcC
Confidence 45899999998774
No 133
>KOG3449|consensus
Probab=25.68 E-value=1.5e+02 Score=25.87 Aligned_cols=53 Identities=11% Similarity=0.214 Sum_probs=44.3
Q ss_pred HHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHH
Q psy17548 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMD 348 (426)
Q Consensus 291 ~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~ 348 (426)
--+|-+++.-|+---+.++++.+|...|...+.+.++.+++++. |+ +.+|.+.
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~----GK-~i~ElIA 56 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK----GK-DIEELIA 56 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc----CC-CHHHHHH
Confidence 34667777788888899999999999999999999999999984 43 6777664
No 134
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=25.66 E-value=49 Score=31.09 Aligned_cols=38 Identities=13% Similarity=0.104 Sum_probs=29.7
Q ss_pred HHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHH
Q psy17548 289 KARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYV 326 (426)
Q Consensus 289 ~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev 326 (426)
.+++=-.-||+|+||.|.+-|--.-+++||..+--.-+
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~ 45 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLL 45 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHH
Confidence 34444556999999999999999999999986544333
No 135
>PHA02554 13 neck protein; Provisional
Probab=25.43 E-value=44 Score=33.96 Aligned_cols=42 Identities=14% Similarity=0.385 Sum_probs=29.2
Q ss_pred CHHHHHH-HHHHcCC-----CCCHHHHHHHHHhcCCCCCCeeehhHHHHHhhCCCCCCccccceeeccCCCCC
Q psy17548 306 ASDHLQN-LLAKLDL-----VSDINYVDIMRKKLDPDELGIILLSAFMDEFFGDPEKPPPDMFDIFHYNGLAR 372 (426)
Q Consensus 306 s~~eL~~-vL~~LG~-----~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~~~~~~~l~~aF~vfD~nG~~~ 372 (426)
+..||++ +||.||- +++++++.+.|++. .+.|.-|||||..+
T Consensus 7 sp~eLkD~iLRrLGAPii~Ievt~dQi~D~I~rA-------------------------Lely~EYH~dG~~k 54 (311)
T PHA02554 7 NPRELKDYILRRLGAPIINVEVTEDQIYDCIQRA-------------------------LELYGEYHYDGVNK 54 (311)
T ss_pred CHHHHHHHHHHhcCCCeeEeecCHHHHHHHHHHH-------------------------HHHHHHHhccchhc
Confidence 4567765 6788994 56788888777652 34566678888766
No 136
>COG5611 Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=25.39 E-value=1.9e+02 Score=25.66 Aligned_cols=63 Identities=25% Similarity=0.286 Sum_probs=48.1
Q ss_pred HHHHHHhhhhhcCCCCCccCHHHHHHHHHHc--CCCCCHHHHHHHHHhcCCCCCCeeehhHHHHH
Q psy17548 287 ADKARRVFKMFDPDGNNFIASDHLQNLLAKL--DLVSDINYVDIMRKKLDPDELGIILLSAFMDE 349 (426)
Q Consensus 287 ~~~~~raF~~fD~dg~G~Is~~eL~~vL~~L--G~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~ 349 (426)
...+.+.|..+.+.+.+||+..-|-....-| |...+.|.+...+..+=.|..=.|...+|...
T Consensus 20 q~ka~Q~f~~~s~~~k~fI~~~vliE~V~vL~~~y~~~rE~i~~VIetll~~~~f~V~~~d~i~~ 84 (130)
T COG5611 20 QTKAEQFFEELSQKGKLFIPEEVLIELVYVLEHGYKWEREDIYEVIETLLNDELFNVELKDFIRE 84 (130)
T ss_pred HHHHHHHHHhcCcCCCccchHHHHHHHHHHHHhcchhhHHHHHHHHHHHhccccceecchHHHHH
Confidence 3468999999999999999998777766654 67778888888888654444455777777653
No 137
>KOG2301|consensus
Probab=23.71 E-value=39 Score=41.65 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=47.6
Q ss_pred chHHHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCCCCeeehhHHHHHhh
Q psy17548 285 SSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDI---NYVDIMRKKLDPDELGIILLSAFMDEFF 351 (426)
Q Consensus 285 ~~~~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~---eev~~mi~~lD~d~~G~I~~~EFl~~~~ 351 (426)
.+.++..+++..||+|..|+|+..++...++.|.-++.- ...+-|--++....+|.|.|.+=+.++.
T Consensus 1414 ~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~kli~mdmp~~~gd~V~f~d~L~aL~ 1483 (1592)
T KOG2301|consen 1414 DDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKRKLISMDLPMVSGDRVHCLDILFALT 1483 (1592)
T ss_pred ccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCceeeeeecCcCCCCeeehhhHHHHHH
Confidence 356789999999999999999999999999997643321 1113333344555777787777655443
No 138
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=23.56 E-value=1.8e+02 Score=29.40 Aligned_cols=57 Identities=9% Similarity=0.050 Sum_probs=40.4
Q ss_pred eeEeeecccccccccchHHHHHHhhhhhcCC------------CCCccCHHHHHHHH-HHcCCCCCHHHH
Q psy17548 270 LTVTFSFEKRLACLESSADKARRVFKMFDPD------------GNNFIASDHLQNLL-AKLDLVSDINYV 326 (426)
Q Consensus 270 ~~vlF~~~~~l~s~e~~~~~~~raF~~fD~d------------g~G~Is~~eL~~vL-~~LG~~~t~eev 326 (426)
|.|+|-.|--|...+.......++++..-.. +++-.+.++..+.| +.+|+..+++++
T Consensus 1 ~~~ifD~DGvL~~g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~~~i 70 (321)
T TIGR01456 1 FGFAFDIDGVLFRGKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSPLQV 70 (321)
T ss_pred CEEEEeCcCceECCccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCHHHH
Confidence 4678888877776666666677777666543 55666777766665 999999888764
No 139
>PF11628 TCR_zetazeta: T-cell surface glycoprotein CD3 zeta chain; InterPro: IPR021663 The TCR complex of T-lymphocytes consists of either a TCR alpha/beta or TCR gamma/delta heterodimer co-expressed at the cell surface with the invariant subunits of CD3 labelled gamma, delta, epsilon, zeta, and eta []. The zeta subunit forms either homodimers or heterodimers with eta [], but eta homodimers have not been observed. The structure of the zetazeta transmembrane dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerisation and assembly with TCR []. The high affinity immunoglobulin epsilon receptor (IgE Fc receptor) subunit gamma associates with a variety of FcR alpha chains to form a functional signaling complex. The gamma subunit has a critical role in allowing the IgE Fc receptor to reach the cell surface and regulates several aspects of the immune response []. This family includes both CD3 zeta subunits and IgE Fc receptor gamma subunits. The gamma chain of the high affinity Fc receptor for IgE has significant structural homology to CD3 zeta and the related CD3 eta subunit and can facilitate T cell receptor expression and signaling in the absence of CD3 zeta and CD3 eta [].; PDB: 2HAC_B.
Probab=23.19 E-value=60 Score=22.34 Aligned_cols=14 Identities=21% Similarity=0.558 Sum_probs=11.1
Q ss_pred hHHHHHHHHHhhhH
Q psy17548 163 VLLFLYSVLYSKGL 176 (426)
Q Consensus 163 vllfLySvilSRgi 176 (426)
.+||+|.+|+|-=.
T Consensus 10 giL~iYgiiiT~L~ 23 (33)
T PF11628_consen 10 GILFIYGIIITALY 23 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 47999999998543
No 140
>PRK00441 argR arginine repressor; Provisional
Probab=22.95 E-value=1.5e+02 Score=26.86 Aligned_cols=43 Identities=16% Similarity=0.093 Sum_probs=36.0
Q ss_pred CCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcC----CCCCCeeeh
Q psy17548 301 GNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLD----PDELGIILL 343 (426)
Q Consensus 301 g~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD----~d~~G~I~~ 343 (426)
..+..+.+||.+.|++-|+..++.-+.+.++++. ++++|..-|
T Consensus 15 ~~~~~~q~eL~~~L~~~G~~vSqaTisRDl~~L~lvKv~~~~G~~~Y 61 (149)
T PRK00441 15 SKEIETQEELAEELKKMGFDVTQATVSRDIKELKLIKVLSNDGKYKY 61 (149)
T ss_pred HcCCCcHHHHHHHHHhcCCCcCHHHHHHHHHHcCcEEeECCCCCEEE
Confidence 4678899999999999999999999999888876 356776555
No 141
>PF08897 DUF1841: Domain of unknown function (DUF1841); InterPro: IPR014993 This group of proteins are functionally uncharacterised.
Probab=22.01 E-value=1.2e+02 Score=27.52 Aligned_cols=42 Identities=12% Similarity=0.210 Sum_probs=32.7
Q ss_pred CCcceehHHHHHHHHHHHhhcCCCCCCccCCCCHHHHHHHHHHHHHHHHHhhcCCC
Q psy17548 54 GGPCAVLAPAQAFILKYIIQNVDPVNDNWRTIEQEDQNKLLVHAVVEMLKQAVDSN 109 (426)
Q Consensus 54 gGPcgVlA~VQA~vlk~lLF~~~~~~~~~~~~~~~~q~~~L~~Al~~IL~~a~~~~ 109 (426)
+=|-||-++.|...-|.. +.-+-.+.....|+++||+|...+
T Consensus 81 dqP~GIr~a~~~L~~r~~--------------~~h~A~H~~mecL~e~iW~aQR~g 122 (137)
T PF08897_consen 81 DQPPGIRAAYERLAARGG--------------DRHEAEHAMMECLAEMIWEAQRNG 122 (137)
T ss_pred cCChHHHHHHHHHHHHcC--------------CHHHHHHHHHHHHHHHHHHHHHcC
Confidence 569999999987776622 245677889999999999987643
No 142
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=21.16 E-value=1.3e+02 Score=21.62 Aligned_cols=31 Identities=23% Similarity=0.495 Sum_probs=24.2
Q ss_pred hHHHHHHhhhhhc-CCC-CCccCHHHHHHHHHH
Q psy17548 286 SADKARRVFKMFD-PDG-NNFIASDHLQNLLAK 316 (426)
Q Consensus 286 ~~~~~~raF~~fD-~dg-~G~Is~~eL~~vL~~ 316 (426)
.+..+..+|+.|- +|| ...++..||+.+|+.
T Consensus 4 ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 4 AIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 4567889999996 444 668999999999864
No 143
>KOG4347|consensus
Probab=21.06 E-value=98 Score=34.69 Aligned_cols=47 Identities=6% Similarity=0.149 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCCCCCeeehhHHHHHhh---CC-CCCCccccceeeccCCC
Q psy17548 324 NYVDIMRKKLDPDELGIILLSAFMDEFF---GD-PEKPPPDMFDIFHYNGL 370 (426)
Q Consensus 324 eev~~mi~~lD~d~~G~I~~~EFl~~~~---~~-~~~~l~~aF~vfD~nG~ 370 (426)
.-++.+....|.+++|.++|.+|+.-+. .. ..+.++-.|++||.+++
T Consensus 555 ~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~ 605 (671)
T KOG4347|consen 555 IFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD 605 (671)
T ss_pred HHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc
Confidence 3445555566666666666666654221 11 12334555666666666
No 144
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=20.99 E-value=1.8e+02 Score=25.02 Aligned_cols=40 Identities=13% Similarity=0.243 Sum_probs=33.5
Q ss_pred cCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHH
Q psy17548 305 IASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDE 349 (426)
Q Consensus 305 Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~ 349 (426)
|+.++++.+|...|..++++.+..+++.+.. .+.+|.+..
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLaG-----k~V~eli~~ 56 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALNG-----KNIDEVISK 56 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHcC-----CCHHHHHHH
Confidence 9999999999999999999999999998732 356666653
No 145
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=20.64 E-value=1.2e+02 Score=18.64 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=11.2
Q ss_pred cCCCCCccCHHHHHHHH
Q psy17548 298 DPDGNNFIASDHLQNLL 314 (426)
Q Consensus 298 D~dg~G~Is~~eL~~vL 314 (426)
|-++||.|++-++.-+-
T Consensus 1 DvN~DG~vna~D~~~lk 17 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLK 17 (21)
T ss_dssp -TTSSSSSSHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHH
Confidence 56788888887765543
No 146
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=20.56 E-value=1.7e+02 Score=25.57 Aligned_cols=48 Identities=10% Similarity=0.259 Sum_probs=37.5
Q ss_pred hhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHH
Q psy17548 296 MFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMD 348 (426)
Q Consensus 296 ~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~ 348 (426)
+.---|+-.|+.++++.+|++.|..++++.+..+++.+.- .+.+|.+.
T Consensus 9 l~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~g-----K~i~eLIa 56 (113)
T PLN00138 9 LAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVKG-----KDITELIA 56 (113)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 3334567789999999999999999999999999988853 34556553
No 147
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=20.54 E-value=1.5e+02 Score=27.93 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=29.2
Q ss_pred CCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Q psy17548 299 PDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLD 334 (426)
Q Consensus 299 ~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD 334 (426)
.|.+|++..++|-+.++.-+..++.++++++++.-|
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD 63 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC
Confidence 578899999999998887666788999888876543
No 148
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=20.52 E-value=1.7e+02 Score=23.23 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=23.4
Q ss_pred ccCHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Q psy17548 304 FIASDHLQNLLAKLDLVSDINYVDIMRKKLD 334 (426)
Q Consensus 304 ~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD 334 (426)
.-+-+||.+.|++.|+..|...+.+.++++.
T Consensus 19 i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL~ 49 (70)
T PF01316_consen 19 ISSQEELVELLEEEGIEVTQATISRDLKELG 49 (70)
T ss_dssp --SHHHHHHHHHHTT-T--HHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHcCCCcchhHHHHHHHHcC
Confidence 4477999999999999999999988888874
No 149
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=20.33 E-value=2.1e+02 Score=21.84 Aligned_cols=57 Identities=19% Similarity=0.349 Sum_probs=37.4
Q ss_pred HHHHHhhhhhcCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeeehhHHHHHhhCCCCCCccccceee
Q psy17548 288 DKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEFFGDPEKPPPDMFDIF 365 (426)
Q Consensus 288 ~~~~raF~~fD~dg~G~Is~~eL~~vL~~LG~~~t~eev~~mi~~lD~d~~G~I~~~EFl~~~~~~~~~~l~~aF~vf 365 (426)
+.++++.... .+.+|.|..++|...++... ..+|+..-|.-++.+|+.. +++.|.+-
T Consensus 8 ~~l~~ll~~~-~~~~g~v~ls~l~~~~~~~~------------~~f~~~~yG~~~l~~ll~~--------~~~~~~i~ 64 (74)
T PF12872_consen 8 KLLRELLESQ-KGEDGWVSLSQLGQEYKKKY------------PDFDPRDYGFSSLSELLES--------LPDVVEIE 64 (74)
T ss_dssp HHHHHHHHHT-CTTTSSEEHHHHHHHHHHHH------------TT--TCCTTSSSHHHHHHT---------TTTEEEE
T ss_pred HHHHHHHHhC-cCCCceEEHHHHHHHHHHHC------------CCCCccccCCCcHHHHHHh--------CCCeEEEe
Confidence 4555666322 23367899999988776532 5678889999999999864 45677763
No 150
>PF08384 NPP: Pro-opiomelanocortin, N-terminal region; InterPro: IPR013593 This domain represents the N-terminal peptide of pro-opiomelanocortin (NPP). It is thought to represent an important pituitary peptide, given its high yield from pituitary glands, and exhibits a potent in vitro aldosterone-stimulating activity [].
Probab=20.04 E-value=33 Score=25.22 Aligned_cols=20 Identities=30% Similarity=0.605 Sum_probs=18.5
Q ss_pred eccccCcccCCCCCCCCCCc
Q psy17548 241 LLEHLRYCEVGSYLKNPINP 260 (426)
Q Consensus 241 ~~E~~~~~~vGs~lK~P~~P 260 (426)
++|..+.|+++--..+|.||
T Consensus 17 lleCi~~Ck~dlsaEsPv~P 36 (45)
T PF08384_consen 17 LLECIQACKSDLSAESPVFP 36 (45)
T ss_pred HHHHHHHccccccCCCCccC
Confidence 47999999999999999999
Done!