RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17548
(426 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.5 bits (143), Expect = 1e-09
Identities = 74/463 (15%), Positives = 135/463 (29%), Gaps = 112/463 (24%)
Query: 10 ITPNVLSDIVRVCW-----GTNVKEDIFV--------RW-TQGFQFSLDEPTAL-VQYEG 54
++ + +S +R+ W + + FV ++ + +P+ + Y
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQK-FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 55 GPCAVLAPAQAFILKYIIQNVDPVNDNWRT--IEQEDQNKLLVHA---------VVEMLK 103
+ Q F KY + + P R +E +L+ +++
Sbjct: 115 QRDRLYNDNQVFA-KYNVSRLQPYL-KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 104 QA--VDSNTFHIVYIDATEASSPDYSFDQ---FHSQIKVQSCSSCDEVEQFYNQRIDLLY 158
F I +++ +SP+ + QI S D RI +
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN-IKLRIHSIQ 231
Query: 159 NRFGVLLFLYSVLYSKGLARLRLEVSDITEPLIDREFGYGSQSLINLMITGRAVNYVFDH 218
LL Y L L ++ F + L +T R V D
Sbjct: 232 AELRRLLKSKP--YENCLLVLL----NVQNAKAWNAFNLSCKIL----LTTRFKQ-VTD- 279
Query: 219 VQDIDGLQLQGINQQSQIGFLTLLEHLRYCEVGSYLKNP----------INP--VWVLGS 266
+ I+ LT E YL NP + ++
Sbjct: 280 --FLSAATTTHISLDHHSMTLTPDEVKSLL--LKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 267 ETH-LTVTFSFEKRLAC------LESSADK-----ARRVFK---MFDPDGNNFIASDHLQ 311
T+ K + C +ESS + R++F +F P + I + L
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH--IPTILLS 393
Query: 312 ---------------NLLAKLDLVS-----------DINYVDIMRKKLDPDELGIILLSA 345
N L K LV I Y+++ K + L ++
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-YLELKVKLENEYALHRSIVDH 452
Query: 346 FMDEFFGDPEKPPPDMFD--IFHYNG--LAR-SNYERKVMYRM 383
+ D + P D + + G L + ER ++RM
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.7 bits (131), Expect = 4e-08
Identities = 87/513 (16%), Positives = 149/513 (29%), Gaps = 162/513 (31%)
Query: 6 SSSSITPNVLS-DIVRVCWGTNVKEDIFVRWTQ---GFQFSLDEPTALVQYEGGPCAVLA 61
+ S P LS + V F +Q F L EPT + P
Sbjct: 2 DAYSTRPLTLSHGSLEHVL--LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE 59
Query: 62 PAQAFILKYIIQNVDPVNDNW-----RTIEQEDQNKLL----VHAVVEMLKQAVDS---N 109
F L Y+ V+P E +N L +HA+ L Q D+
Sbjct: 60 LVGKF-LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 110 TFHIV--YIDATEASSPDYSFDQFHSQIKVQSCSSCDEVEQFYNQRIDLLYNRFGVLLFL 167
T ++ YI A + FD+ + ++ + L FG
Sbjct: 119 TKELIKNYITARIMAKR--PFDKKSNSALFRAVGE-GNAQ---------LVAIFG----- 161
Query: 168 YSVLYSKG-------LARLRLEVSDITEPLIDREFGYGSQSLINLMITGRAVNYVFDHVQ 220
G LR ++ L+ + +++L L+ T VF
Sbjct: 162 -------GQGNTDDYFEELR-DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 221 DIDGLQLQGINQQ-----------S--QIGFLTLLEHLRYCEVGSYLKNPINPVWVL-GS 266
+I L+ + S IG + L ++ ++ + P L G+
Sbjct: 214 NILEW-LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF--TPGELRSYLKGA 270
Query: 267 ETH----LTVTF--------SFEKRLACLESSADKARRVFKMF---------------DP 299
H +T SF S KA V +F P
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFFV-------SVRKAITV--LFFIGVRCYEAYPNTSLPP 321
Query: 300 DGNNFIASDHLQN-------LLAKLDLVSDIN------YVDIMRKKLDPDE-LGIILLSA 345
I D L+N +L+ +S++ YV+ L + + I L++
Sbjct: 322 S----ILEDSLENNEGVPSPMLS----ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG 373
Query: 346 FMDEFF--GDPE------------KPPPDMFDIFHYNGLARSNY-ERKVMYRMA------ 384
G P+ K P + D +R + ERK+ +
Sbjct: 374 A-KNLVVSGPPQSLYGLNLTLRKAKAPSGL-DQ------SRIPFSERKLKFSNRFLPVAS 425
Query: 385 --HCVLLECNINCLLETNPMLTCLQTKWPSIEL 415
H LL + + + L + + ++
Sbjct: 426 PFHSHLLVPASDLINKD---LVKNNVSFNAKDI 455
Score = 43.9 bits (103), Expect = 1e-04
Identities = 48/283 (16%), Positives = 92/283 (32%), Gaps = 74/283 (26%)
Query: 3 AAGSSSSITPNVLSDIVRVCWGTNVKEDIFVRWTQGFQFSLDEPTALVQY----EGGPC- 57
S S +V I + + I VR + + + P+ L EG P
Sbjct: 285 ETDSWESFFVSVRKAITVLFF-------IGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 58 --AVLAPAQAFILKYIIQNVDPVNDNWRTIEQEDQNKLLVHAVVEMLKQAVDSNTFHIVY 115
++ Q + Y+ + N + Q V + V+ +V
Sbjct: 338 MLSISNLTQEQVQDYV----NKTN---SHLPAGKQ----VEISL------VNGAKNLVV- 379
Query: 116 IDATEASSPDYSFDQFHSQI-KVQSCSSCDEVEQFYNQRIDLLYNRFGVLLFLYSVLYSK 174
S P S + + K ++ S D+ +++R NRF L + S +S
Sbjct: 380 ------SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF---LPVASPFHSH 430
Query: 175 GLARLRLEVSDITEPLIDREFGYGSQSLINLMITGRAVNYVFDHVQDIDGLQLQGINQQS 234
L I + L+ + ++ + I V+D DG L+ ++
Sbjct: 431 LLVPA---SDLINKDLVKNNVSFNAKD---IQIP------VYDTF---DGSDLRVLSG-- 473
Query: 235 QIGFLTLLEHLRYCEVGSYLKNPINPVW---VLGSETHLTVTF 274
++ E + V ++ P+ W TH+ + F
Sbjct: 474 -----SISERI----VDCIIRLPVK--WETTTQFKATHI-LDF 504
Score = 41.2 bits (96), Expect = 7e-04
Identities = 49/304 (16%), Positives = 92/304 (30%), Gaps = 93/304 (30%)
Query: 16 SDIVRVCWGTNVKE-DIFVRWTQGF---QFSLDEPTALVQYEGGPCAVLAPAQAFILKYI 71
S + W D + T GF ++ P L + GG K I
Sbjct: 1639 SKAAQDVW----NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG----------KRI 1684
Query: 72 IQNVDPVNDNWRTIEQEDQNKLLVHAVVEMLKQAVDSNTFH--IVYIDATEASSPDYSFD 129
+N + E KL + + + + S TF + AT+
Sbjct: 1685 RENYSAM-----IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ--------- 1730
Query: 130 QFHSQ--IKVQSCSSCDEVEQFYNQRIDLLYNRFGVLL---F----L--YSVLYSKG--- 175
+Q + + + F + L ++ + F L Y+ L S
Sbjct: 1731 --FTQPALTLMEKA------AF-----EDLKSKGLIPADATFAGHSLGEYAALASLADVM 1777
Query: 176 -------LARLRLEVSDITEPLIDREFGYGSQSL-------INLMITGRAVNYVFDHVQD 221
+ R + P E G + + + + A+ YV + V
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVP--RDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK 1835
Query: 222 IDGLQLQGIN---QQSQI---GFLTLLEHLRYCEVGSYLK-NPINPVWVLGSETHLTVTF 274
G ++ +N + Q G L L+ + V +++K I+ + L +
Sbjct: 1836 RTGWLVEIVNYNVENQQYVAAGDLRALDTV--TNVLNFIKLQKIDII-------ELQKSL 1886
Query: 275 SFEK 278
S E+
Sbjct: 1887 SLEE 1890
Score = 28.1 bits (62), Expect = 7.2
Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 69/171 (40%)
Query: 2 TA-AGSSSSITPNVLSDIVRVCWGTNVKEDIFVRWTQG-FQFSLDEPTALVQYEGGPCAV 59
A A + ++ + +V V +F R G L + G A+
Sbjct: 1768 AALASLADVMS---IESLVEV---------VFYR---GMTMQVAVPRDELGRSNYGMIAI 1812
Query: 60 LAPAQAFI------LKYIIQN--------VDPVNDNWRTIEQEDQNKLLVHAVV---EML 102
P + L+Y+++ V+ VN N +Q V +
Sbjct: 1813 -NPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVEN-QQ----------YVAAGD-- 1858
Query: 103 KQAVDS-----NTFHIVYIDATEASSPDYSFDQFHSQIKVQSCSSCDEVEQ 148
+A+D+ N + ID I++Q S +EVE
Sbjct: 1859 LRALDTVTNVLNFIKLQKIDI----------------IELQKSLSLEEVEG 1893
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 47.1 bits (112), Expect = 4e-07
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 2/73 (2%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEF 350
+ F+ FD N I+ + + + + + D + ++ + G + F+ F
Sbjct: 27 TQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLSRF 86
Query: 351 FGDPEKPPPDMFD 363
E M
Sbjct: 87 --SSETAATPMAT 97
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 44.3 bits (105), Expect = 1e-05
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 6/72 (8%)
Query: 290 ARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAF--- 346
F+ D + +N I+ D L L D +D + G++ L F
Sbjct: 96 LPLFFRAVDTNEDNNISRDEYGIFFGMLGL--DKTMAPASFDAIDTNNDGLLSLEEFVIA 153
Query: 347 MDEFF-GDPEKP 357
+FF D +
Sbjct: 154 GSDFFMNDGDST 165
Score = 29.3 bits (66), Expect = 1.5
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 289 KARRVFKMFDPDGNNFIASDHLQNLLAKL 317
K + F D D + I +++ +
Sbjct: 7 KMKTYFNRIDFDKDGAITRMDFESMAERF 35
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 43.4 bits (102), Expect = 3e-05
Identities = 10/78 (12%), Positives = 20/78 (25%), Gaps = 5/78 (6%)
Query: 284 ESSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILL 343
++ +FK D G+ + + QN L V + + L
Sbjct: 101 AWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQL--QCADVPAVYNVITDGGKVTFDL 158
Query: 344 SAF---MDEFFGDPEKPP 358
+ + P
Sbjct: 159 NRYKELYYRLLTSPAADA 176
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 42.8 bits (101), Expect = 4e-05
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 5/74 (6%)
Query: 284 ESSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILL 343
E + + D DG+ + L + + LD D G +
Sbjct: 94 EMARPFLHAALGVADTDGDGAVTVADTARALTAFGV--PEDLARQAAAALDTDGDGKVGE 151
Query: 344 SAF---MDEFFGDP 354
+ +F P
Sbjct: 152 TEIVPAFARYFTVP 165
Score = 30.1 bits (68), Expect = 0.73
Identities = 13/104 (12%), Positives = 18/104 (17%), Gaps = 26/104 (25%)
Query: 288 DKARRVFKMFDPDGNNFIASDHLQNLLAKL---------------DLVSDINYVDIMRKK 332
+ F FD DGN I + +
Sbjct: 4 RRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGI 63
Query: 333 LDPDELGIILLSAFM-----------DEFFGDPEKPPPDMFDIF 365
D D I F+ D F +
Sbjct: 64 ADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVA 107
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 42.9 bits (101), Expect = 5e-05
Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 5/79 (6%)
Query: 284 ESSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILL 343
+F + D D N I D + ++ + + D DE G + +
Sbjct: 105 TLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDV 164
Query: 344 SAF---MDEFF--GDPEKP 357
F+ DP
Sbjct: 165 DEMTRQHLGFWYTMDPACE 183
Score = 28.2 bits (63), Expect = 3.3
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVS 321
+ +F D + N I+ D + + + + +
Sbjct: 19 KHMFNFLDVNHNGKISLDEMVYKASDIVINN 49
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 42.1 bits (99), Expect = 9e-05
Identities = 12/79 (15%), Positives = 20/79 (25%), Gaps = 7/79 (8%)
Query: 284 ESSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILL 343
E +F + D G+N I + + D L ++
Sbjct: 105 EWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYGIPKSD--CDAAFDTLSDGGKTMVTR 162
Query: 344 SAF---MDEFFG--DPEKP 357
F E+F D
Sbjct: 163 EIFARLWTEYFVSNDRGAK 181
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 42.5 bits (100), Expect = 1e-04
Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 6/99 (6%)
Query: 268 THLTVTFSFEKRLACLESSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVD 327
+R A + + + D DG+ + D L+ ++ D+ +
Sbjct: 108 RVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTMMKAFDVPQEA--AY 165
Query: 328 IMRKKLDPDELGII----LLSAFMDEFFGDPEKPPPDMF 362
+K D D+ G + L+ F + + ++
Sbjct: 166 TFFEKADTDKSGKLERTELVHLFRKFWMEPYDPQWDGVY 204
Score = 29.8 bits (67), Expect = 1.2
Identities = 6/60 (10%), Positives = 18/60 (30%), Gaps = 9/60 (15%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL---------DLVSDINYVDIMRKKLDPDELGII 341
+ F FD D + + D + ++ + + V + + + +
Sbjct: 39 YKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGL 98
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 41.7 bits (98), Expect = 1e-04
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 6/80 (7%)
Query: 284 ESSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGII-- 341
+ + M D + + I +D L L + ++D + G +
Sbjct: 98 RVLGPVVKGIVGMCDKNADGQINADEFAAWLTALGM--SKAEAAEAFNQVDTNGNGELSL 155
Query: 342 --LLSAFMDEFFGDPEKPPP 359
LL+A D FG +
Sbjct: 156 DELLTAVRDFHFGRLDVELL 175
Score = 30.5 bits (69), Expect = 0.62
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 288 DKARRVFKMFDPDGNNFIASDHLQNLLAKL 317
D+ ++ F +D DGN + + +
Sbjct: 7 DRLKKRFDRWDFDGNGALERADFEKEAQHI 36
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 39.6 bits (93), Expect = 2e-04
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 284 ESSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILL 343
+ R VF D + + + + + L +L + + + + +LD D G I
Sbjct: 23 GEELARLRSVFAACDANRSGRLEREEFRALCTELRV-RPADAEAVFQ-RLDADRDGAITF 80
Query: 344 SAFMDEFFG 352
F F G
Sbjct: 81 QEFARGFLG 89
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 40.1 bits (94), Expect = 4e-04
Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 4/83 (4%)
Query: 284 ESSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGII-- 341
+ ++ ++ D D + +++ + L + + LD ++ G I
Sbjct: 98 AMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISR 157
Query: 342 --LLSAFMDEFFGDPEKPPPDMF 362
L D FG E + F
Sbjct: 158 DEFLVTVNDFLFGLEETALANAF 180
Score = 28.2 bits (63), Expect = 3.7
Identities = 4/27 (14%), Positives = 13/27 (48%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL 317
+ + D G+ FI+ + + + ++
Sbjct: 17 KTRMQRVDVTGDGFISREDYELIAVRI 43
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 37.6 bits (88), Expect = 6e-04
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMD 348
R+FK FD +G+ I+S L + L L V+ + V M ++D D G I F D
Sbjct: 14 ERIFKRFDTNGDGKISSSELGDALKTLGSVTP-DEVRRMMAEIDTDGDGFISFDEFTD 70
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 36.8 bits (86), Expect = 9e-04
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 20/67 (29%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSD-----------------INY---VDIMR 330
R+FK FD +G+ I+ L + L L S I++ +
Sbjct: 6 ERIFKRFDTNGDGKISLSELTDALRTLGSTSADEVQRMMAEIDTDGDGFIDFNEFISFCN 65
Query: 331 KKLDPDE 337
+
Sbjct: 66 ANPGLMK 72
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 39.0 bits (91), Expect = 0.001
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 285 SSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDIN-------YVDIMRKKLDPDE 337
K R FK++D DGN I L N++ + ++ N + +++ K+D +
Sbjct: 85 KVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDING 144
Query: 338 LGIILLSAFMDEFFGDPE 355
G + L FM+ D
Sbjct: 145 DGELSLEEFMEGVQKDEV 162
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 38.3 bits (90), Expect = 0.001
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 20/66 (30%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL-DLVSD----------------INY---VDIMR 330
R F MFD DG FI D+L++LL + D S NY VDI
Sbjct: 88 RNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPLKNKQFNYNKMVDIKG 147
Query: 331 KKLDPD 336
K D D
Sbjct: 148 KAEDED 153
Score = 31.7 bits (73), Expect = 0.20
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 23/76 (30%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL----------DLVSD----INY---VDIMRKKL 333
+ F M D D + FI + L+++ + L ++ + +N+ + + +K+
Sbjct: 19 KEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECPGQLNFTAFLTLFGEKV 78
Query: 334 ---DPDELGIILLSAF 346
DP++ L +AF
Sbjct: 79 SGTDPED---ALRNAF 91
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 40.1 bits (94), Expect = 0.001
Identities = 15/61 (24%), Positives = 35/61 (57%)
Query: 288 DKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFM 347
++ R FKMFD DG+ I++ L L ++ D + ++ + +++D ++ G + + F+
Sbjct: 417 ERMERAFKMFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFV 476
Query: 348 D 348
+
Sbjct: 477 E 477
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 39.3 bits (91), Expect = 0.002
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 286 SADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDIN--------YVDIMRKKLDPDE 337
++ + ++++ +D D + +I++ L+N L L L Y D M K D ++
Sbjct: 102 NSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNK 161
Query: 338 LGIILLSAFM 347
G + L+
Sbjct: 162 DGRLDLNDLA 171
Score = 32.7 bits (74), Expect = 0.17
Identities = 10/84 (11%), Positives = 21/84 (25%), Gaps = 10/84 (11%)
Query: 284 ESSADKARRVFKMFDPDGNNFIASDHLQNLLAKL---------DLVSDIN-YVDIMRKKL 333
A ++++ FD D N +I L + + +
Sbjct: 7 NLDAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAY 66
Query: 334 DPDELGIILLSAFMDEFFGDPEKP 357
D G + + + E
Sbjct: 67 DATFDGRLQIEELANMILPQEENF 90
Score = 30.8 bits (69), Expect = 0.75
Identities = 7/83 (8%), Positives = 22/83 (26%), Gaps = 16/83 (19%)
Query: 276 FEKRLACLESSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVD-------- 327
F+ + ++F +D + + + + + +
Sbjct: 184 FKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRE 243
Query: 328 -IMRK-------KLDPDELGIIL 342
++ K+ EL + L
Sbjct: 244 CLLTHCDMNKDGKIQKSELALCL 266
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 36.5 bits (85), Expect = 0.002
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPD 336
R F++ D DGN +I++ L++++ L VD M ++ D D
Sbjct: 32 REAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADID 77
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 38.0 bits (89), Expect = 0.002
Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 21/69 (30%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSD-----------------INY---VDIMR 330
F FD DG+ +I D +Q L D I+Y +MR
Sbjct: 85 VSAFSYFDKDGSGYITLDEIQQACKDFGL-DDIHIDDMIKEIDQDNDGQIDYGEFAAMMR 143
Query: 331 KKLDPDELG 339
K+ +G
Sbjct: 144 KRKGNGGIG 152
Score = 29.1 bits (66), Expect = 2.1
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGII 341
+ +FKM D D + I D L++ L ++ + + + D D+ G I
Sbjct: 13 KELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTI 63
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 38.0 bits (89), Expect = 0.002
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 6/67 (8%)
Query: 288 DKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFM 347
+ F D D + +I+ + +L+ L D N +D + + GI
Sbjct: 108 TFLKAAFNKIDKDEDGYISKSDIVSLVHDKVL--DNNDIDNFFLSVHSIKKGIPREHIIN 165
Query: 348 ----DEF 350
EF
Sbjct: 166 KISFQEF 172
Score = 30.7 bits (70), Expect = 0.60
Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGII 341
+F D + N ++ + +LA + + + I+ + LD ++ G I
Sbjct: 42 NELFYKLDTNHNGSLSHREIYTVLASVGI-KKWDINRIL-QALDINDRGNI 90
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 38.0 bits (89), Expect = 0.002
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 23/72 (31%)
Query: 284 ESSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDL---VSD-----------------I 323
+ FK FD DGN I+ + L+ + + D+ + D I
Sbjct: 125 YLKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEI 184
Query: 324 NY---VDIMRKK 332
++ + +M KK
Sbjct: 185 DFHEFMLMMSKK 196
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 37.6 bits (88), Expect = 0.003
Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 21/68 (30%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL-DLVSD-----------------INY---VDIM 329
FK+ DPDG I L+ LL + ++Y ++
Sbjct: 98 MGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYKNICYVI 157
Query: 330 RKKLDPDE 337
D +
Sbjct: 158 THGEDAEG 165
Score = 31.4 bits (72), Expect = 0.30
Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 24/77 (31%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL-----------DLVSD----INY---VDIMRKK 332
+ F + D + + I D L+ A + ++ + IN+ + + +K
Sbjct: 28 KEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKEASGPINFTVFLTMFGEK 87
Query: 333 L---DPDELGIILLSAF 346
L DP++ +++ AF
Sbjct: 88 LKGADPED---VIMGAF 101
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 36.0 bits (84), Expect = 0.003
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGII-------LL 343
+ FK+FD D N +I++ L++++ L V+ M K+ D D G + ++
Sbjct: 12 KEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKMM 71
Query: 344 SAFMDEFFGDPEKPPPDMFDIF 365
G+ + F
Sbjct: 72 MTVRGGGGGNGWS---RLRRKF 90
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 35.6 bits (83), Expect = 0.003
Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 22/69 (31%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL--DLVSD-----------------INY---VDI 328
R FK+FD +G+ I D + ++ K+ + ++D I+ +D+
Sbjct: 11 LRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMDL 70
Query: 329 MRKKLDPDE 337
++K + +
Sbjct: 71 IKKSKNALK 79
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 36.7 bits (86), Expect = 0.004
Identities = 9/66 (13%), Positives = 23/66 (34%), Gaps = 20/66 (30%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL-DLVSD----------------INY---VDIMR 330
R F MFD + +++++LL + D + +Y +++
Sbjct: 90 RNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPVEGGKFDYVKFTAMIK 149
Query: 331 KKLDPD 336
+ +
Sbjct: 150 GSGEEE 155
Score = 32.9 bits (76), Expect = 0.089
Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 23/76 (30%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL----------DLVSD----INY---VDIMRKKL 333
+ F M D D + F++ + ++ + +L ++ + +N+ + I KL
Sbjct: 21 KEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAPGPLNFTMFLSIFSDKL 80
Query: 334 ---DPDELGIILLSAF 346
D +E + +AF
Sbjct: 81 SGTDSEE---TIRNAF 93
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 36.8 bits (86), Expect = 0.004
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 23/70 (32%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL----------------DLVSD----INY---VD 327
FK FD +G FI+ L+++L L DL D + Y V
Sbjct: 87 MEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFVK 146
Query: 328 IMRKKLDPDE 337
+ PD+
Sbjct: 147 KVMAGPYPDK 156
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 36.4 bits (85), Expect = 0.005
Identities = 13/75 (17%), Positives = 31/75 (41%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEF 350
+ F++FD D + ++ + L + L L ++ ++ +L+ E + +
Sbjct: 8 QECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKEFDLATFKTVYRKP 67
Query: 351 FGDPEKPPPDMFDIF 365
P + +M D F
Sbjct: 68 IKTPTEQSKEMLDAF 82
Score = 33.3 bits (77), Expect = 0.059
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL 317
F+ D +GN I L+ LL L
Sbjct: 79 LDAFRALDKEGNGTIQEAELRQLLLNL 105
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 36.9 bits (86), Expect = 0.005
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 19/68 (27%)
Query: 286 SADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSD----------------INY---V 326
S ++ F+ FD DG+ I ++ L L ++ + +++ V
Sbjct: 121 SRERLLAAFQQFDSDGSGKITNEELGRLFGVTEVDDETWHQVLQECDKNNDGEVDFEEFV 180
Query: 327 DIMRKKLD 334
++M+K D
Sbjct: 181 EMMQKICD 188
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 34.9 bits (81), Expect = 0.005
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINY------VDIMRKKLDPDELGII 341
FK D +G+ ++ + LQ + LD ++ + K D + G I
Sbjct: 10 EAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKI 66
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 37.2 bits (86), Expect = 0.005
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVS-DINYVDIMRKKLDPDELGIILLSAFMDE 349
+F D GN + + + + KL+ + + K+LD + G + DE
Sbjct: 133 TVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKELDKNGTGSVTF----DE 188
Query: 350 F 350
F
Sbjct: 189 F 189
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 36.7 bits (86), Expect = 0.005
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 19/60 (31%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSD----------------INY---VDIMRK 331
F FD DG+ +I D LQ + + I+Y V +M+K
Sbjct: 102 FAAFTYFDKDGSGYITPDELQQACEEFGVEDVRIEELMRDVDQDNDGRIDYNEFVAMMQK 161
Score = 27.5 bits (62), Expect = 5.7
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 26/79 (32%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL----------DLVSD--------INYVD----- 327
+ +F M D D + I + L+ L ++ DL+ I+Y +
Sbjct: 30 KEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYKEFIAAT 89
Query: 328 IMRKKLDPDELGIILLSAF 346
+ K++ ++ L +AF
Sbjct: 90 LHLNKIEREDH---LFAAF 105
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 37.2 bits (86), Expect = 0.006
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 13/88 (14%)
Query: 270 LTVTFSFEKRLACLESSADKARRVFKMFDPDGNNFIASDHLQNLLAKL--DLVSDINYVD 327
L V +F + ++ + + F+++D DGN +I + L LL L +++ +
Sbjct: 173 LPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQELDINN 232
Query: 328 IMRK-----------KLDPDELGIILLS 344
I KL +L +IL +
Sbjct: 233 ISTYKKNIMALSDGGKLYRTDLALILSA 260
Score = 37.2 bits (86), Expect = 0.007
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL--------DLVSDINYVDIMRKKLDPDELGIIL 342
+ ++ +D D + FI ++ L+N L L D Y D+M K D + G +
Sbjct: 106 MKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLE 165
Query: 343 LSAFM 347
L+
Sbjct: 166 LTEMA 170
Score = 36.8 bits (85), Expect = 0.008
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 284 ESSADKARRVFKMFDPDGNNFIASDHLQNLLAKL------DLVSDINYVDIMRKKLDPDE 337
+A + ++ FD DG+ ++ LQNL+ +L + + + +
Sbjct: 12 LITASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRD 71
Query: 338 LGIILLSAFMD 348
G I +
Sbjct: 72 DGKIGIVELAH 82
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 35.3 bits (82), Expect = 0.006
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 273 TFSFEKRLACL---ESSADKARRVFKMFDPDGNNFIASDHLQNLLAKL 317
TF +K + SA + + +F+ D D + ++ D L+ L K
Sbjct: 23 TFEPQKFFQTSGLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKF 70
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 34.0 bits (79), Expect = 0.008
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPD 336
+ F+ FD DG+ I D L+ +A L +D M ++ D D
Sbjct: 9 QVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVD 54
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 36.1 bits (84), Expect = 0.008
Identities = 13/103 (12%), Positives = 32/103 (31%), Gaps = 17/103 (16%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEF 350
R F+ D G+ + S+ ++ L + +K D G + D++
Sbjct: 96 REGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGF----DDY 151
Query: 351 -----FGDPEKPPPDMFDIF--HYNGLARSNYE---RKVMYRM 383
F + ++F + G ++ + +
Sbjct: 152 VELSIFVCRVR---NVFAFYDRERTGQVTFTFDTFIGGSVSIL 191
Score = 32.3 bits (74), Expect = 0.21
Identities = 12/58 (20%), Positives = 21/58 (36%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMD 348
F+ D DG+ I+ L L+ + + + + D + G I F D
Sbjct: 30 MEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFKD 87
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 36.0 bits (84), Expect = 0.009
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 24/80 (30%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL----------------DLVSD--INY---VDIM 329
R F++FD DGN +I++ L++++ L D+ D +NY V +M
Sbjct: 87 REAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146
Query: 330 RKKL---DPDELGIILLSAF 346
K ++ +
Sbjct: 147 TAKGGGGGAAARKEVIRNKI 166
Score = 29.4 bits (67), Expect = 1.6
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGII-------LL 343
+ F +FD DG+ I + L ++ L + M ++D D G I ++
Sbjct: 14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMM 73
Query: 344 SAFMDEFFGDPEKPPPDMFDIFHY 367
+ M + D E+ ++ + F
Sbjct: 74 ARKMKD--TDSEE---EIREAFRV 92
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 36.0 bits (84), Expect = 0.009
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 21/63 (33%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL----------------DLVSD--INY---VDIM 329
+ F++FD D + I L+ + +L D D I+ + IM
Sbjct: 104 LKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIM 163
Query: 330 RKK 332
+K
Sbjct: 164 KKT 166
Score = 29.1 bits (66), Expect = 1.6
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 27/80 (33%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL----------DLVSD--------INY---VDIM 329
R F +FD DG+ I + L+ + L ++S+ I++ + +M
Sbjct: 31 REAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMM 90
Query: 330 RKKL---DPDELGIILLSAF 346
K+ D E +L AF
Sbjct: 91 TAKMGERDSRE---EILKAF 107
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 35.6 bits (83), Expect = 0.010
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 23/70 (32%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL----------------DLVSD----INY---VD 327
FK FD +G I+S ++N+L L D+ D I Y +
Sbjct: 88 MEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYEDLMK 147
Query: 328 IMRKKLDPDE 337
+ PD+
Sbjct: 148 KVMAGPFPDK 157
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 36.1 bits (84), Expect = 0.010
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDL-----VSDINYVDIMRKKLDPD 336
F++FD D + I + L ++L + D+N V M + +D +
Sbjct: 125 YCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKN 175
Score = 28.4 bits (64), Expect = 3.9
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGII 341
+ F + D DG +I + L+ L K L N+ ++ ++D D G I
Sbjct: 55 KSTFLVLDEDGKGYITKEQLKKGLEKDGLKLPYNFDLLL-DQIDSDGSGKI 104
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 36.3 bits (84), Expect = 0.010
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 285 SSADKARRVFKMFDPDGNNFIASDHLQNLL------AKLDLVSDINYVDIMRKKLDPDEL 338
K + FK++D DGN I + L ++ +S +++++ K+D +
Sbjct: 90 KMEQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINND 149
Query: 339 GIILLSAFMD 348
G + L F++
Sbjct: 150 GELTLEEFIN 159
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 35.1 bits (82), Expect = 0.012
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLD 318
R+ F+ FDP+G +I LQ+ L L
Sbjct: 82 RQAFRTFDPEGTGYIPKAALQDALLNLG 109
Score = 32.1 bits (74), Expect = 0.14
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGII 341
+ F++FD + FI + LQ +L + + + + M + D G I
Sbjct: 9 KEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKI 59
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 36.6 bits (85), Expect = 0.013
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 288 DKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFM 347
++ RR F +FD D + I + L NL + + + + D ++ +I F+
Sbjct: 435 ERLRRAFNLFDTDKSGKITKEELANLFGLTSI--SEKTWNDVLGEADQNKDNMIDFDEFV 492
Query: 348 D 348
Sbjct: 493 S 493
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 35.9 bits (83), Expect = 0.013
Identities = 15/81 (18%), Positives = 23/81 (28%), Gaps = 9/81 (11%)
Query: 284 ESSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGII-- 341
+ VF +FD DG+ I D + + + + D D G +
Sbjct: 109 TLIREWGDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDV 168
Query: 342 -----LLSAFMDEFFGDPEKP 357
F DPE
Sbjct: 169 DEMTRQHLGFWYT--LDPEAD 187
Score = 30.5 bits (69), Expect = 0.81
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 13/61 (21%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRK---KLDPDELGIILLSAFM 347
+ +F D +GN I D + + + DI K + + + + AF
Sbjct: 23 KHMFDFLDINGNGKITLDEIVSKASD----------DICAKLEATPEQTKRHQVCVEAFF 72
Query: 348 D 348
Sbjct: 73 R 73
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 36.0 bits (83), Expect = 0.013
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 8/69 (11%)
Query: 288 DKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINY--------VDIMRKKLDPDELG 339
DK F+++D FI ++ ++ S +N +D ++ D G
Sbjct: 122 DKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDG 181
Query: 340 IILLSAFMD 348
I +
Sbjct: 182 KIDKEEWRS 190
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 34.1 bits (79), Expect = 0.015
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 286 SADKARRVFKMFDPDGNNFIASDHLQNLLAKLD 318
SA+ ++VFK D D + FI + L+ +L
Sbjct: 40 SANDVKKVFKAIDADASGFIEEEELKFVLKSFA 72
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 35.4 bits (81), Expect = 0.016
Identities = 14/82 (17%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 284 ESSADKARRVFKMFDPDGNNFIASDHLQNLL------AKLDLVSD--INYVDIMRKKLDP 335
+ ++ R F M D + + + ++ ++ ++ KL + + Y ++ ++LDP
Sbjct: 94 QGFDNRLRTFFDMVDKNADGRLTAEEVKEIIALSASANKLSKIKERADEYTALIMEELDP 153
Query: 336 DELGIILLSAFMDEFFGDPEKP 357
LG I + P +
Sbjct: 154 TNLGYIEMEDLEALLLQSPSEA 175
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 33.4 bits (77), Expect = 0.016
Identities = 12/58 (20%), Positives = 24/58 (41%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMD 348
+ F++FD D +N + ++ L ++ L + + K D D G F+
Sbjct: 17 KEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFLT 74
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 34.2 bits (79), Expect = 0.017
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 276 FEKRLACLESSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDL 319
F + + S+ + + +F++ D D + FI D L+ L + +
Sbjct: 29 FFQISGMSKKSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFES 72
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 34.9 bits (81), Expect = 0.017
Identities = 7/47 (14%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL-DLVSDINYVDIMRKKLDPD 336
++F FD + ++ ++N+L D ++D +
Sbjct: 87 IKMFAHFDNNCTGYLTKSQMKNILTTWGDALTD-QEAIDALNAFSSE 132
Score = 27.2 bits (61), Expect = 6.2
Identities = 4/27 (14%), Positives = 7/27 (25%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL 317
+ I+ D+ KL
Sbjct: 18 DVRIYFNEKSSGGKISIDNASYNARKL 44
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 33.7 bits (78), Expect = 0.018
Identities = 15/58 (25%), Positives = 26/58 (44%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMD 348
+ F MFD DG I++ L ++ L +D + +++D D G I F+
Sbjct: 23 KAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLV 80
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 34.8 bits (81), Expect = 0.018
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL 317
R F FD + + FI DHL+ LL +
Sbjct: 79 RNAFACFDEEASGFIHEDHLRELLTTM 105
Score = 31.7 bits (73), Expect = 0.18
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 23/76 (30%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL----------DLVSD----INY---VDIMRKKL 333
+ F M D + + FI + L ++LA + ++S+ IN+ + + +KL
Sbjct: 10 KEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSEAPGPINFTMFLTMFGEKL 69
Query: 334 ---DPDELGIILLSAF 346
DP++ ++ +AF
Sbjct: 70 NGTDPED---VIRNAF 82
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 34.9 bits (81), Expect = 0.018
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEF 350
+ VF+ +D D + I + L+ L+ + DI+ +K D G I D+F
Sbjct: 77 QNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAF----DDF 132
Score = 29.9 bits (68), Expect = 1.1
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVS-DINYVDIMRKKLDPDELGII 341
VF+ D D + I+ LQ L+ + V + D + +
Sbjct: 10 WNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGV 61
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 36.2 bits (84), Expect = 0.019
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 288 DKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFM 347
++ R F+MFD D + I+S L + D+ D + ++D + G + F
Sbjct: 418 ERLERAFRMFDSDNSGKISSTELATIFGVSDV--DSETWKSVLSEVDKNNDGEVDFDEFQ 475
Query: 348 D 348
Sbjct: 476 Q 476
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 34.4 bits (80), Expect = 0.019
Identities = 5/29 (17%), Positives = 15/29 (51%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDL 319
+ ++K+ D DG+ + + + + K +
Sbjct: 78 KVLYKLMDVDGDGKLTKEEVTSFFKKHGI 106
Score = 33.3 bits (77), Expect = 0.045
Identities = 11/82 (13%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGII-------LL 343
+FK D +G+ ++ + ++ ++K + + + ++ K +D D G I
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFY 62
Query: 344 SAFMDEFFGDPEKPPPDMFDIF 365
+ + D + ++ +
Sbjct: 63 GSIQGQDLSDDKIGLKVLYKLM 84
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 33.9 bits (78), Expect = 0.020
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 22/74 (29%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL----------DLVSD--------INY---VDIM 329
+ + FD +GN I L+ +L KL L+ + +Y + +M
Sbjct: 35 KEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFLRMM 94
Query: 330 RKKLDPDELGIILL 343
K L +IL+
Sbjct: 95 LGKRS-AILKMILM 107
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 34.4 bits (80), Expect = 0.024
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLD 318
+R F++FD D I+ +L+ + +L
Sbjct: 99 KRAFQLFDDDHTGKISIKNLRRVAKELG 126
Score = 31.4 bits (72), Expect = 0.30
Identities = 8/58 (13%), Positives = 20/58 (34%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMD 348
F +FD + + F+ L+ + L + + + D + ++ F
Sbjct: 26 YEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFYI 83
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 35.6 bits (82), Expect = 0.025
Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPD 336
F+ D + N ++ + +L + D + + D D
Sbjct: 191 VADFRKIDTNSNGTLSRKEFREHFVRLGFDKK-SVQDALFRYADED 235
Score = 34.8 bits (80), Expect = 0.039
Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMDEF 350
R++F G+ + L+ +LAK + + ++ D G +
Sbjct: 125 RQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRM----SYITL 180
Score = 34.4 bits (79), Expect = 0.056
Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 289 KARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDIN-YVDIMRKKLDPDELGIILLSAFM 347
R ++ D D + ++ + +Q +L + + +D D+ +
Sbjct: 254 VLRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSY---- 309
Query: 348 DEF 350
EF
Sbjct: 310 QEF 312
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 33.4 bits (77), Expect = 0.027
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 273 TFSFEKRLACL---ESSADKARRVFKMFDPDGNNFIASDHLQNLLAKL 317
+F +K + + SAD ++VF + D D + FI D L ++L
Sbjct: 23 SFDHKKFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGF 70
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 33.3 bits (77), Expect = 0.028
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 286 SADKARRVFKMFDPDGNNFIASDHLQNLLAKLD 318
+ + + VF++ D D + FI + L+ +L
Sbjct: 39 TDAQVKEVFEILDKDQSGFIEEEELKGVLKGFS 71
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 34.0 bits (79), Expect = 0.030
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 21/62 (33%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDL-VSD-----------------INY---VDIM 329
+ FK+FD D I+ +L+ + +L ++D ++ + IM
Sbjct: 82 LKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIM 141
Query: 330 RK 331
+K
Sbjct: 142 KK 143
Score = 28.6 bits (65), Expect = 2.1
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL 317
R F +FD DG I L+ + L
Sbjct: 9 REAFDLFDADGTGTIDVKELKVAMRAL 35
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 34.4 bits (79), Expect = 0.032
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 13/79 (16%)
Query: 288 DKARRVFKMFDPDGNNFIASDHLQNLLAKL-----------DLVSDINYVDIMRKKLDPD 336
K+ F++FD D + + + L L+ L + + +D + ++ D D
Sbjct: 98 IKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQL--IDNILEESDID 155
Query: 337 ELGIILLSAFMDEFFGDPE 355
G I LS F P+
Sbjct: 156 RDGTINLSEFQHVISRSPD 174
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 35.4 bits (82), Expect = 0.033
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 288 DKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFM 347
DK F+ FD DGN I+ D L ++ L + M +D + G + F
Sbjct: 426 DKLESAFQKFDQDGNGKISVDELASVFGLDHL--ESKTWKEMISGIDSNNDGDVDFEEFC 483
Query: 348 D 348
Sbjct: 484 K 484
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 32.1 bits (74), Expect = 0.035
Identities = 9/64 (14%), Positives = 20/64 (31%), Gaps = 21/64 (32%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDL-VSD-----------------INY---VDIM 329
+RVF+ FD + + ++ D + + + +N +
Sbjct: 4 KRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCI 63
Query: 330 RKKL 333
K L
Sbjct: 64 EKML 67
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 33.7 bits (78), Expect = 0.038
Identities = 9/63 (14%), Positives = 26/63 (41%), Gaps = 21/63 (33%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL----------------DLVSD--INY---VDIM 329
+ F++FD + ++ L+ +L L ++ S+ I+Y ++ +
Sbjct: 86 VKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIEDV 145
Query: 330 RKK 332
++
Sbjct: 146 LRQ 148
Score = 33.7 bits (78), Expect = 0.043
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 8/83 (9%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDL-VSDINYVDIMRKKLDPDELGII-------L 342
+ +F +FD G IA D L + L + ++ DI+ + + L
Sbjct: 7 KDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGL 66
Query: 343 LSAFMDEFFGDPEKPPPDMFDIF 365
+ E + D F
Sbjct: 67 IEVNEKELDATTKAKTEDFVKAF 89
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 33.6 bits (78), Expect = 0.039
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 21/63 (33%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL----------------DLVSD--INY---VDIM 329
FK+FD DGN I++ L++++ L D+ D INY V +M
Sbjct: 86 IEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMM 145
Query: 330 RKK 332
K
Sbjct: 146 VSK 148
Score = 28.6 bits (65), Expect = 2.2
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGII-------LL 343
+ F +FD DG+ I + L ++ L + M ++D D G I L+
Sbjct: 13 KEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLM 72
Query: 344 SAFMDEFFGDPEKPPPDMFDIFHY 367
+ M E D E+ ++ + F
Sbjct: 73 ARKMKE--QDSEE---ELIEAFKV 91
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 33.6 bits (78), Expect = 0.041
Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 20/61 (32%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL----------DLVSD-------INY---VDIMR 330
FK+FD +G+ I++ L+++L + +++ + IN ++
Sbjct: 87 LEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVSDGSGEINIKQFAALLS 146
Query: 331 K 331
K
Sbjct: 147 K 147
Score = 28.6 bits (65), Expect = 2.5
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL 317
+ F +FD D + I++ L ++ L
Sbjct: 14 KEAFALFDKDNSGSISASELATVMRSL 40
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 33.9 bits (78), Expect = 0.045
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFM 347
R+ F FD D + + LQ L + + V+ + K+ G I ++
Sbjct: 75 RQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTS--GKITFDDYI 129
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 33.7 bits (78), Expect = 0.050
Identities = 11/28 (39%), Positives = 22/28 (78%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLD 318
R F+++D +GN +I++D ++ +LA+LD
Sbjct: 94 REAFRLYDKEGNGYISTDVMREILAELD 121
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 34.0 bits (78), Expect = 0.050
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 288 DKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINY--------VDIMRKKLDPDELG 339
+K + FK++D FI + L+ ++ L S++ VD + D G
Sbjct: 111 EKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDG 170
Query: 340 IILLSAFMD 348
I + + D
Sbjct: 171 KIDIDEWKD 179
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 33.7 bits (78), Expect = 0.054
Identities = 7/48 (14%), Positives = 17/48 (35%), Gaps = 12/48 (25%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDEL 338
F++FD + + FI + L +L + +++
Sbjct: 99 ANCFRIFDKNADGFIDIEELGEILRATGE------------HVTEEDI 134
Score = 31.4 bits (72), Expect = 0.33
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGII-------LL 343
+ F MFD DG I++ L ++ L +D + +++D D G I ++
Sbjct: 23 KAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMM 82
Query: 344 SAFM-DEFFGDPEKPPPDMFDIFHYNG 369
M ++ G E+ + F IF N
Sbjct: 83 VRQMKEDAKGKSEEELANCFRIFDKNA 109
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 33.3 bits (77), Expect = 0.057
Identities = 9/46 (19%), Positives = 22/46 (47%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPD 336
+F+MFD + + +I + L+ +L + ++ + K D +
Sbjct: 98 SDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKN 143
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 33.6 bits (77), Expect = 0.058
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 12/83 (14%)
Query: 285 SSADKARRVFKMFDPDGNNFIASDHLQNLL-AKLDLVSDINY-----------VDIMRKK 332
DK F+++D D N I+ D + ++ A +V + V+ +
Sbjct: 96 ELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNM 155
Query: 333 LDPDELGIILLSAFMDEFFGDPE 355
+D ++ G + L F + DP
Sbjct: 156 MDKNKDGQLTLEEFCEGSKRDPT 178
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 33.4 bits (77), Expect = 0.061
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 284 ESSADKARRVFKMFDPDGNNFIASDHLQNLLAKL 317
K R F+++D D + +I++ L +L +
Sbjct: 71 GDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMM 104
Score = 28.0 bits (63), Expect = 3.4
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 15/83 (18%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDIN-YVDIMRKKLDPDELGII-------L 342
+ FK D D + ++ + +L N V + D D G +
Sbjct: 9 GKRFKKLDLDNSGSLSVEEFMSLPELQ-----QNPLVQRVIDIFDTDGNGEVDFKEFIEG 63
Query: 343 LSAFMDEFFGDPEKPPPDMFDIF 365
+S F + GD E+ F I+
Sbjct: 64 VSQFSVK--GDKEQKLRFAFRIY 84
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 31.8 bits (73), Expect = 0.061
Identities = 10/50 (20%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 291 RRVFKMFDP-DGNN-FIASDHLQNLLAKL--DLVSDINYVDIMRKKLDPD 336
+ F++F +G+ I+ + L+ ++ L L+ ++ +D M +++D +
Sbjct: 8 KGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKN 57
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 34.0 bits (78), Expect = 0.061
Identities = 11/57 (19%), Positives = 17/57 (29%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFM 347
+ F D D + + + L + M + D D G I FM
Sbjct: 54 YQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEFM 110
Score = 32.8 bits (75), Expect = 0.13
Identities = 6/62 (9%), Positives = 18/62 (29%), Gaps = 5/62 (8%)
Query: 289 KARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMD 348
A +F M + + + L +L + ++ + + L +
Sbjct: 118 LAYNLFVMNARARSGTLEPHEILPALQQLGFYINQRTSLLLHRL-FARGMAFCDL----N 172
Query: 349 EF 350
+
Sbjct: 173 CW 174
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 33.0 bits (76), Expect = 0.076
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL 317
F++FD +GN + L+++L L
Sbjct: 90 LEGFRVFDKEGNGKVMGAELRHVLTTL 116
Score = 31.0 bits (71), Expect = 0.35
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 9/88 (10%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELG---------II 341
+ F++FD G+ I +++ L V + DEL +
Sbjct: 13 KEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLP 72
Query: 342 LLSAFMDEFFGDPEKPPPDMFDIFHYNG 369
+L A + + F +F G
Sbjct: 73 MLQAVAKNRGQGTYEDYLEGFRVFDKEG 100
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 32.2 bits (74), Expect = 0.083
Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 273 TFSFEKRLACL---ESSADKARRVFKMFDPDGNNFIASDHLQNLLAKL 317
+F+++ + + + D+ ++VF + D D + FI + LQ L
Sbjct: 24 SFNYKSFFSTVGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNF 71
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 32.5 bits (75), Expect = 0.095
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL 317
+ F++FD D I L+ +L L
Sbjct: 79 VKGFQVFDKDATGMIGVGELRYVLTSL 105
Score = 29.8 bits (68), Expect = 0.69
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL 317
++ F +FD G I + +LL
Sbjct: 8 KQAFSLFDRHGTGRIPKTSIGDLLRAC 34
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 32.6 bits (74), Expect = 0.10
Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 28/102 (27%)
Query: 283 LESSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSD-------INYVD-------- 327
L S + + + FD +GN I L+ +L KL + I V
Sbjct: 43 LPSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFS 102
Query: 328 ------IMRKKLDPDELGIILLSAFMDEFFGDPEKP---PPD 360
+M K I+ + +E + ++P P
Sbjct: 103 YSDFLRMMLGKRS----AILRMILMYEEKNKEHKRPTGPPAK 140
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.10
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 8/25 (32%)
Query: 277 EKR-LACLESSADKARRVFKMFDPD 300
EK+ L L++S K++ D
Sbjct: 18 EKQALKKLQAS-------LKLYADD 35
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 31.8 bits (73), Expect = 0.12
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 286 SADKARRVFKMFDPDGNNFIASDHLQNLLAKLD 318
S D ++ F + D D + FI D L+ L
Sbjct: 39 SLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFS 71
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 32.3 bits (74), Expect = 0.12
Identities = 8/57 (14%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFM 347
+ F D DG+ + L+ + + + + K+ + G I ++
Sbjct: 73 KENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKN--GRIFFDDYV 127
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 32.8 bits (75), Expect = 0.13
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 283 LESSADKARRVFKMFDPDGNNFIASDHLQNLLAKL 317
L S +K F+++D D + I+ + +L +
Sbjct: 109 LNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLM 143
Score = 28.2 bits (63), Expect = 3.9
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 13/79 (16%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDIN-YVDIMRKKLDPDELGII-------L 342
F+ D + +++ LQ + A +N D + + PD + +
Sbjct: 32 HHRFRALDRNKKGYLSRMDLQQIGAL-----AVNPLGDRIIESFFPDGSQRVDFPGFVRV 86
Query: 343 LSAFMDEFFGDPEKPPPDM 361
L+ F D E P
Sbjct: 87 LAHFRPVEDEDTETQDPKK 105
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 32.9 bits (75), Expect = 0.13
Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 12/83 (14%)
Query: 285 SSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINY------------VDIMRKK 332
+ +K R FK++D D + +I + + +++ + + VD +
Sbjct: 96 TLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAM 155
Query: 333 LDPDELGIILLSAFMDEFFGDPE 355
+D + G + L F + DP
Sbjct: 156 MDKNADGKLTLQEFQEGSKADPS 178
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 33.1 bits (75), Expect = 0.13
Identities = 12/83 (14%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 285 SSADKARRVFKMFDPDGNNFIASDHLQNLL-AKLDLVSDINY-----------VDIMRKK 332
+ +K + F ++D + + I + + ++ + D++ Y V+ +K
Sbjct: 162 TVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQK 221
Query: 333 LDPDELGIILLSAFMDEFFGDPE 355
+D ++ G++ + F++ D
Sbjct: 222 MDRNQDGVVTIDEFLETCQKDEN 244
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 32.1 bits (74), Expect = 0.14
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL 317
++FD +GN + L+++LA L
Sbjct: 88 VEGLRVFDKEGNGTVMGAELRHVLATL 114
Score = 32.1 bits (74), Expect = 0.16
Identities = 7/49 (14%), Positives = 19/49 (38%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELG 339
+ F +FD G+ I + + ++ L ++ + +E+
Sbjct: 11 KEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMN 59
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 33.3 bits (76), Expect = 0.16
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 21/63 (33%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL----------------DLVSD--INY---VDIM 329
R F++FD DGN +I++ L++++ L D+ D +NY V +M
Sbjct: 388 REAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 447
Query: 330 RKK 332
K
Sbjct: 448 TAK 450
Score = 32.2 bits (73), Expect = 0.35
Identities = 14/58 (24%), Positives = 24/58 (41%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMD 348
+ F +FD DG+ I + L ++ L + M ++D D G I F+
Sbjct: 315 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 372
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 32.4 bits (74), Expect = 0.16
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 283 LESSADKARRVFKMFDPDGNNFIASDHLQNLLAKL-------DLVSDINYVDIMRKKLDP 335
L S ++K F+++D D ++ I+ D L +L + + + I D ++ D
Sbjct: 108 LNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSI--ADRTIQEADQ 165
Query: 336 DELGIILLSAFMD 348
D I + F+
Sbjct: 166 DGDSAISFTEFVK 178
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 32.1 bits (73), Expect = 0.19
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 12/76 (15%)
Query: 285 SSADKARRVFKMFDPDGNNFIASDHLQNLLAKL------------DLVSDINYVDIMRKK 332
K + F M+D DGN +I+ + ++ + D + + + ++
Sbjct: 96 KLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQ 155
Query: 333 LDPDELGIILLSAFMD 348
+D + G + L F+
Sbjct: 156 MDTNRDGKLSLEEFIR 171
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 32.0 bits (73), Expect = 0.20
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFM 347
R+ F FD D + + LQ L + V+ + K+ + G I ++
Sbjct: 106 RQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTN--GKITFDDYI 160
Score = 27.0 bits (60), Expect = 9.0
Identities = 5/33 (15%), Positives = 10/33 (30%), Gaps = 1/33 (3%)
Query: 273 TFSFEKRLACLESSADKARRVFKMFDPDGNNFI 305
+F+ +AC F+ D +
Sbjct: 153 KITFDDYIACC-VKLRALTDSFRRRDTAQQGVV 184
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 32.3 bits (74), Expect = 0.20
Identities = 13/76 (17%), Positives = 34/76 (44%), Gaps = 23/76 (30%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL----------DLVSD----INY---VDIMRKKL 333
+ F++ D D + FI+ + ++ L +V++ IN+ + I ++
Sbjct: 60 KEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAEAPGPINFTMFLTIFGDRI 119
Query: 334 ---DPDELGIILLSAF 346
D ++ ++++AF
Sbjct: 120 AGTDEED---VIVNAF 132
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 32.5 bits (74), Expect = 0.20
Identities = 10/83 (12%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 285 SSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDIN------------YVDIMRKK 332
+ +K F ++D + + +I + + +++ + + +V+ +K
Sbjct: 135 TVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQK 194
Query: 333 LDPDELGIILLSAFMDEFFGDPE 355
+D ++ G++ + F++ D
Sbjct: 195 MDKNKDGVVTIDEFIESCQKDEN 217
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 31.7 bits (72), Expect = 0.21
Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 25/90 (27%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL----------DLVSD--------INY---VDIM 329
+ + FD + I L+ ++ KL ++S+ I+Y V++M
Sbjct: 53 KEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVNMM 112
Query: 330 RKKLDPDELGIILLSAFMDEFFGDPEKPPP 359
K ++ L + + P
Sbjct: 113 LGKRS----AVLKLVMMFEGKANESSPKPV 138
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 30.5 bits (69), Expect = 0.21
Identities = 13/61 (21%), Positives = 17/61 (27%), Gaps = 8/61 (13%)
Query: 285 SSADKAR--RVFKMFDPDGNNFIASDHLQNLLAKLDLVSDI-----NYVDIMRK-KLDPD 336
+ + FK PD N FI + K L D + L D
Sbjct: 4 TDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLD 63
Query: 337 E 337
E
Sbjct: 64 E 64
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 32.0 bits (73), Expect = 0.22
Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 24/104 (23%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGI-----ILLSA 345
+ ++K FD D + I S L + + ++ ++ + + I
Sbjct: 80 QAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRYSDEGGNMDFDNFISCLV 139
Query: 346 FMDEFFGDPEKPPPDMFDIFHY-----NGLARSNYE---RKVMY 381
+D MF F G + N + + MY
Sbjct: 140 RLDA-----------MFRAFKSLDKDGTGQIQVNIQEWLQLTMY 172
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 32.7 bits (75), Expect = 0.22
Identities = 7/54 (12%), Positives = 12/54 (22%), Gaps = 3/54 (5%)
Query: 294 FKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFM 347
D + IA + L + R + G + F
Sbjct: 388 HIHLMGDESACIAYIRITQYLDAGGIPRTAQSE-ETR--VWHRRDGKWQIVHFH 438
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 30.2 bits (69), Expect = 0.23
Identities = 11/58 (18%), Positives = 21/58 (36%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMD 348
+ F +FD + I L+ + L + + + D + G I F+D
Sbjct: 10 KEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFLD 67
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 31.9 bits (73), Expect = 0.25
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGII 341
R F+ D DG+ + +D + LAKL LV D + + +K D + G +
Sbjct: 40 ARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTL 90
Score = 31.2 bits (71), Expect = 0.41
Identities = 9/67 (13%), Positives = 20/67 (29%), Gaps = 10/67 (14%)
Query: 284 ESSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILL 343
++ F D G+ + D L+ + + + + + L
Sbjct: 105 QAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPK-----VRSGEWTEDEV-----L 154
Query: 344 SAFMDEF 350
F+D F
Sbjct: 155 RRFLDNF 161
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 31.8 bits (72), Expect = 0.29
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 13/82 (15%)
Query: 285 SSADKARRVFKMFDPDGNNFIASDHLQNLLAKL-----------DLVSDINYVDIMRKKL 333
+ K+ F++FD D + + + L L+ L + + +D + ++
Sbjct: 126 TPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQL--IDNILEES 183
Query: 334 DPDELGIILLSAFMDEFFGDPE 355
D D G I LS F P+
Sbjct: 184 DIDRDGTINLSEFQHVISRSPD 205
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 30.1 bits (68), Expect = 0.33
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 285 SSADKAR--RVFKMFDPDGNNFIASDHLQNLLAKLDLVSDI-----NYVDIMRK-KLDPD 336
S A+KA+ +F D D + F++ ++ + K L S + + D KL D
Sbjct: 5 SPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKD 64
Query: 337 E 337
+
Sbjct: 65 Q 65
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 31.4 bits (71), Expect = 0.33
Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 12/83 (14%)
Query: 285 SSADKARRVFKMFDPDGNNFIASDHLQNLL-AKLDLVSDINY-----------VDIMRKK 332
+ +K F+++D + + +I D + ++ + ++ + V + K
Sbjct: 96 TLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKL 155
Query: 333 LDPDELGIILLSAFMDEFFGDPE 355
+D +E G I L F + DP
Sbjct: 156 MDKNEDGYITLDEFREGSKVDPS 178
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 30.8 bits (70), Expect = 0.33
Identities = 10/87 (11%), Positives = 23/87 (26%), Gaps = 24/87 (27%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL--DLVSD-----------------INY---VDI 328
+ F + + I ++ L+ L + +S +N +
Sbjct: 43 CKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCVL 102
Query: 329 MRKKLDP--DELGIILLSAFMDEFFGD 353
M + ++ L A E
Sbjct: 103 MVRLSPEMMEDAETWLEKALTQELCNH 129
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 31.5 bits (71), Expect = 0.36
Identities = 17/83 (20%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 285 SSADKARRVFKMFDPDGNNFIASDHLQNLL-AKLDLVSDINY-----------VDIMRKK 332
+ +K R F ++D + + +I + + +++ A D++ Y VD+ +K
Sbjct: 122 TVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQK 181
Query: 333 LDPDELGIILLSAFMDEFFGDPE 355
+D ++ GI+ L F++ D
Sbjct: 182 MDKNKDGIVTLDEFLESCQEDDN 204
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga
maritima} PDB: 2gaj_A*
Length = 633
Score = 32.2 bits (74), Expect = 0.38
Identities = 6/30 (20%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 324 NYVDIMRKKLDPDELGIILLSAFMDEFFGD 353
Y+ +R L P +G + + ++++ + D
Sbjct: 476 GYIKKIRGYLYPTIVGSV-VMDYLEKKYSD 504
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 30.3 bits (69), Expect = 0.39
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 273 TFSFEKRLAC---LESSADKARRVFKMFDPDGNNFIASDHLQNLLAKL 317
+F+++ A SAD ++ F + D D + FI D L+ L
Sbjct: 24 SFNYKAFFAKVGLTAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVF 71
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 29.8 bits (67), Expect = 0.43
Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 8/67 (11%)
Query: 284 ESSADKAR--RVFKMFDPDGNNFIASDHLQNLLAK-----LDLVSDINYVDIMRK-KLDP 335
+ S+ + ++ + + + L K L L + D K L
Sbjct: 5 QLSSGNPVYEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSK 64
Query: 336 DELGIIL 342
E + L
Sbjct: 65 QEFFVAL 71
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 30.1 bits (68), Expect = 0.43
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
Query: 285 SSADKAR--RVFKMFDPDGNNFIASDHLQNLLAKLDLVSDI-----NYVDIMRK-KLDPD 336
+ + + ++F D + + + +L + L N DI + KL +
Sbjct: 9 PQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWNLSDIDQDGKLTAE 68
Query: 337 E 337
E
Sbjct: 69 E 69
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 28.7 bits (65), Expect = 0.55
Identities = 10/51 (19%), Positives = 26/51 (50%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGII 341
+FK D +G+ ++ + ++ ++K + + + ++ K +D D G I
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEI 53
Score = 26.0 bits (58), Expect = 6.0
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 286 SADKARRVFKMFDPDGNNFI 305
+ + +FK D DGN I
Sbjct: 34 NEQLLQLIFKSIDADGNGEI 53
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 30.2 bits (69), Expect = 0.60
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 22/63 (34%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL-----------------DLVSD--INY---VDI 328
R F+ FD +G+ I++ L+ + L DL D +++ V +
Sbjct: 91 RDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRM 150
Query: 329 MRK 331
M +
Sbjct: 151 MSR 153
Score = 28.7 bits (65), Expect = 2.3
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL 317
R F+ FD D + +I L N + +
Sbjct: 14 REAFREFDKDKDGYINCRDLGNCMRTM 40
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 30.6 bits (69), Expect = 0.60
Identities = 14/83 (16%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 285 SSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDIN------------YVDIMRKK 332
+ +K R F ++D + + +I + + +++ + + +VD+ +K
Sbjct: 89 TVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQK 148
Query: 333 LDPDELGIILLSAFMDEFFGDPE 355
+D ++ GI+ L F++ D
Sbjct: 149 MDKNKDGIVTLDEFLESXQEDDN 171
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 30.5 bits (69), Expect = 0.66
Identities = 9/53 (16%), Positives = 22/53 (41%)
Query: 285 SSADKARRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDE 337
+ K + FK++D D N I L +++ + + V++ ++
Sbjct: 92 TLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLL 144
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 29.0 bits (66), Expect = 0.70
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGII 341
+ +FKM D D + I D L++ L ++ + + + D D+ G I
Sbjct: 26 KELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTI 76
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 29.3 bits (66), Expect = 0.86
Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 8/61 (13%)
Query: 285 SSADKAR--RVFKMFDPDGNNFIASDHLQNLLAKLDLVSDI-----NYVDIMRK-KLDPD 336
+ + F+ PD ++FI+ +N K L D L
Sbjct: 17 TEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWELSDADCDGALTLP 76
Query: 337 E 337
E
Sbjct: 77 E 77
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 30.8 bits (70), Expect = 0.95
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 324 NYVDIMRKKLDPDELGIILLSAFMDEFFGD 353
NYV ++ P +LGI + F+ +
Sbjct: 987 NYVVEKYGRMIPTKLGID-VFRFLVRRYAK 1015
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 29.9 bits (67), Expect = 1.1
Identities = 9/55 (16%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 285 SSADKARRVFKMFDPDGNNFIASDHLQNLL-AKLDLVSDINYVDIMRKKLDPDEL 338
+ K F ++D DGN I+ + + ++ A +++ + + + P++
Sbjct: 104 KTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKR 158
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 28.8 bits (64), Expect = 1.1
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 21/81 (25%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKL------------DLVSDINYVDIMR----KKLD 334
+ F + D + + + L+ L K D+ MR K +D
Sbjct: 23 KTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVD 82
Query: 335 PDELGIILLSAFM-----DEF 350
++ ++ L F+ EF
Sbjct: 83 TNQDRLVTLEEFLASTQRKEF 103
>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA;
1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X*
1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A*
3pwt_A* 3px7_A* 1ecl_A 1cy9_A* 1cyy_A*
Length = 592
Score = 30.3 bits (69), Expect = 1.4
Identities = 6/30 (20%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 324 NYVDIMRKKLDPDELGIILLSAFMDEFFGD 353
YV + ++ +++G I ++ ++E F +
Sbjct: 508 GYVRVENRRFYAEKMGEI-VTDRLEENFRE 536
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 28.8 bits (64), Expect = 1.7
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 285 SSADKARRVFKMFDPDGNNFIASDHLQNLLAKL 317
S + FKM D DGNN + L + +
Sbjct: 65 SPQELQLHYFKMHDYDGNNLLDGLELSTAITHV 97
>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium
channel, alternative splicing, disease epilepsy,
glycoprotein, ION transport; NMR {Homo sapiens} PDB:
2kbi_A
Length = 129
Score = 28.2 bits (63), Expect = 2.3
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLD 318
V++ FDPD FI L + LD
Sbjct: 46 YEVWEKFDPDATQFIEFAKLSDFADALD 73
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand,
voltage-gated sodium channel regulation, CTD binds to
FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens}
PDB: 2kbi_A
Length = 168
Score = 28.5 bits (63), Expect = 2.7
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLD 318
+++ FDP+ FI L + L
Sbjct: 23 YEIWEKFDPEATQFIEYSVLSDFADALS 50
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B
protein; 1.90A {Nitrosomonas europaea}
Length = 318
Score = 28.5 bits (64), Expect = 4.0
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 334 DPDELGIILLSAFMDEFFGDPEKP--PPDMFDIFHYNGLARSNYER 377
+ I++LS ++ + P + P D+FD + N + +
Sbjct: 134 TVTKDYILMLSDWVSSWANKPGEGGIPGDVFDYYTINAKSFPETQP 179
>2otu_A FV light chain variable domain; antibody FV polyglutamine complex,
immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A
Length = 115
Score = 27.1 bits (61), Expect = 4.2
Identities = 8/26 (30%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 247 YCEVGSYLKNPINPVWVLGSETHLTV 272
C G V+V G T +TV
Sbjct: 92 IC--GVGDTIKEQFVYVFGGGTKVTV 115
>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease,
cathepsin, hydrolase, glycoprotein, thiol protease; HET:
DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X
Length = 265
Score = 28.1 bits (63), Expect = 4.9
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 68 LKYIIQNVDPVNDNWRTIEQEDQNKLLVHAVVEMLKQAVDSNTFHIVYIDATEASSPDYS 127
+ + + ++ T + ++ + A V+++K V + I YI A
Sbjct: 126 ILHNKNEPNSLDGKGYTAYESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAEN------V 179
Query: 128 FDQFHSQIKVQS-CSS 142
S KV++ C
Sbjct: 180 MGYEFSGKKVKNLCGD 195
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 27.9 bits (61), Expect = 8.7
Identities = 11/58 (18%), Positives = 22/58 (37%)
Query: 291 RRVFKMFDPDGNNFIASDHLQNLLAKLDLVSDINYVDIMRKKLDPDELGIILLSAFMD 348
R F FD + + + L + + +DP+ +G++ AF+D
Sbjct: 728 RASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVVTFQAFID 785
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 27.5 bits (61), Expect = 8.9
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 100 EMLKQAVDSNTFHIVYIDATEASSPDYSFD 129
EML+ A + ++V A + P +F+
Sbjct: 87 EMLEVAREKGVKNVVEAKAEDLPFPSGAFE 116
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC
domain, vesicle trafficking, membrane curvature,
endocytosis, exocytosis, F-BAR domain; 2.30A {Homo
sapiens}
Length = 276
Score = 27.4 bits (60), Expect = 9.7
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 13/58 (22%)
Query: 122 SSPDYSFDQFHSQIKVQSCSSCDEVEQFYNQRIDLLYNRFGVLLFLYSVLYSKGLARL 179
+ FD + +K S E+ F +R + YS+ + +L
Sbjct: 14 GEKNSGFDVLYHNMK-HGQISTKELADFVRERATI------------EEAYSRSMTKL 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.418
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,685,652
Number of extensions: 409786
Number of successful extensions: 1113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1104
Number of HSP's successfully gapped: 197
Length of query: 426
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 330
Effective length of database: 4,021,377
Effective search space: 1327054410
Effective search space used: 1327054410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)