Query psy17549
Match_columns 418
No_of_seqs 184 out of 1698
Neff 7.5
Searched_HMMs 46136
Date Sat Aug 17 01:21:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17549.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17549hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0361|consensus 100.0 4.1E-77 8.8E-82 570.6 23.7 362 47-412 5-377 (543)
2 cd03336 TCP1_beta TCP-1 (CTT o 100.0 4.3E-74 9.4E-79 602.1 40.7 362 51-413 2-369 (517)
3 PTZ00212 T-complex protein 1 s 100.0 3.6E-74 7.8E-79 604.4 40.0 367 47-413 7-381 (533)
4 TIGR02339 thermosome_arch ther 100.0 1.4E-73 3.1E-78 599.0 39.0 357 50-413 4-375 (519)
5 KOG0363|consensus 100.0 1.3E-74 2.8E-79 550.3 27.8 367 46-413 2-374 (527)
6 cd03340 TCP1_eta TCP-1 (CTT or 100.0 8E-73 1.7E-77 593.7 39.0 361 49-413 3-374 (522)
7 TIGR02341 chap_CCT_beta T-comp 100.0 2.1E-72 4.5E-77 589.0 40.1 363 50-413 2-370 (519)
8 TIGR02344 chap_CCT_gamma T-com 100.0 1.4E-72 3E-77 592.3 38.2 357 50-413 4-376 (525)
9 TIGR02343 chap_CCT_epsi T-comp 100.0 1.7E-72 3.7E-77 591.2 38.6 363 46-413 9-386 (532)
10 TIGR02347 chap_CCT_zeta T-comp 100.0 5.2E-72 1.1E-76 586.7 39.5 359 49-413 3-381 (531)
11 cd03339 TCP1_epsilon TCP-1 (CT 100.0 6.3E-72 1.4E-76 587.1 38.3 362 47-413 6-382 (526)
12 cd03343 cpn60 cpn60 chaperonin 100.0 9.4E-72 2E-76 585.4 38.4 357 50-413 3-372 (517)
13 TIGR02345 chap_CCT_eta T-compl 100.0 1.6E-71 3.5E-76 583.3 37.9 360 49-413 5-375 (522)
14 cd03335 TCP1_alpha TCP-1 (CTT 100.0 1.7E-70 3.7E-75 576.4 38.9 350 57-413 3-373 (527)
15 TIGR02342 chap_CCT_delta T-com 100.0 2.4E-70 5.2E-75 573.8 38.7 349 58-413 5-372 (517)
16 TIGR02340 chap_CCT_alpha T-com 100.0 2.3E-69 4.9E-74 568.7 39.4 351 56-413 6-377 (536)
17 cd03338 TCP1_delta TCP-1 (CTT 100.0 1.9E-69 4E-74 567.5 38.5 351 56-413 2-371 (515)
18 TIGR02346 chap_CCT_theta T-com 100.0 3.4E-69 7.4E-74 566.1 39.1 356 50-413 5-373 (531)
19 KOG0358|consensus 100.0 5.6E-69 1.2E-73 513.9 24.9 351 57-414 21-390 (534)
20 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 3.9E-67 8.4E-72 545.2 35.1 327 52-413 2-338 (484)
21 cd03337 TCP1_gamma TCP-1 (CTT 100.0 3.2E-66 6.9E-71 538.1 32.3 316 50-413 4-335 (480)
22 KOG0362|consensus 100.0 3.4E-64 7.3E-69 495.6 30.7 356 49-414 12-377 (537)
23 cd03341 TCP1_theta TCP-1 (CTT 100.0 5.7E-63 1.2E-67 512.7 34.2 310 58-413 4-325 (472)
24 COG0459 GroL Chaperonin GroEL 100.0 2.9E-63 6.4E-68 515.2 30.5 349 55-413 4-369 (524)
25 cd00309 chaperonin_type_I_II c 100.0 1.1E-62 2.5E-67 510.5 34.6 309 57-413 3-321 (464)
26 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 8.7E-62 1.9E-66 506.2 34.4 331 74-413 1-340 (485)
27 KOG0360|consensus 100.0 2.2E-61 4.8E-66 472.8 24.2 353 56-415 13-385 (545)
28 KOG0364|consensus 100.0 4.5E-61 9.7E-66 466.7 17.1 360 46-412 3-375 (527)
29 KOG0359|consensus 100.0 3.6E-59 7.8E-64 452.8 15.6 353 51-413 6-372 (520)
30 PRK12849 groEL chaperonin GroE 100.0 1.4E-56 3.1E-61 470.0 33.2 299 58-403 6-333 (542)
31 PRK00013 groEL chaperonin GroE 100.0 2.5E-56 5.4E-61 468.2 33.6 302 57-404 5-334 (542)
32 PTZ00114 Heat shock protein 60 100.0 3.8E-56 8.2E-61 468.7 33.6 300 56-402 16-345 (555)
33 cd03344 GroEL GroEL_like type 100.0 9.1E-56 2E-60 462.6 33.9 299 58-403 4-331 (520)
34 PRK12851 groEL chaperonin GroE 100.0 1.8E-55 4E-60 461.9 32.8 301 58-404 7-335 (541)
35 TIGR02348 GroEL chaperonin Gro 100.0 1.9E-55 4.2E-60 460.8 32.7 300 58-404 5-333 (524)
36 PRK12850 groEL chaperonin GroE 100.0 6.4E-55 1.4E-59 458.1 33.3 300 58-403 7-334 (544)
37 PRK12852 groEL chaperonin GroE 100.0 4.2E-54 9.1E-59 452.7 33.0 299 58-403 7-334 (545)
38 CHL00093 groEL chaperonin GroE 100.0 9.9E-54 2.2E-58 448.4 30.8 301 58-403 6-334 (529)
39 PRK14104 chaperonin GroEL; Pro 100.0 7.6E-53 1.7E-57 442.2 32.9 301 58-405 7-336 (546)
40 PLN03167 Chaperonin-60 beta su 100.0 3.9E-53 8.4E-58 447.2 30.0 294 58-396 60-389 (600)
41 cd03334 Fab1_TCP TCP-1 like do 100.0 2.8E-36 6.1E-41 289.9 21.6 193 213-413 17-229 (261)
42 KOG0357|consensus 100.0 4.9E-36 1.1E-40 284.0 11.6 233 45-414 9-251 (400)
43 cd03333 chaperonin_like chaper 100.0 1.7E-31 3.7E-36 249.0 19.7 175 197-414 2-186 (209)
44 KOG0356|consensus 100.0 2.6E-28 5.5E-33 245.1 19.7 292 57-392 19-340 (550)
45 KOG0230|consensus 99.8 4.5E-20 9.8E-25 202.2 11.6 193 213-413 331-542 (1598)
46 PF02579 Nitro_FeMo-Co: Dinitr 69.0 11 0.00023 29.6 4.9 37 318-355 45-81 (94)
47 cd00851 MTH1175 This uncharact 68.6 13 0.00028 29.7 5.4 44 317-362 54-97 (103)
48 COG1433 Uncharacterized conser 67.7 16 0.00036 31.0 5.9 41 317-358 56-96 (121)
49 cd00562 NifX_NifB This CD repr 61.1 25 0.00054 27.9 5.7 38 318-356 53-90 (102)
50 cd00852 NifB NifB belongs to a 39.4 1E+02 0.0022 24.9 6.1 31 325-356 64-94 (106)
51 TIGR02663 nifX nitrogen fixati 37.8 1.3E+02 0.0027 25.1 6.6 46 325-371 62-111 (119)
52 PRK13600 putative ribosomal pr 35.3 1.5E+02 0.0032 23.5 6.0 51 315-365 18-72 (84)
53 cd00853 NifX NifX belongs to a 34.5 1.1E+02 0.0024 24.6 5.5 31 325-356 60-90 (102)
54 PF12846 AAA_10: AAA-like doma 33.4 98 0.0021 29.3 5.9 58 313-370 240-302 (304)
55 PRK13602 putative ribosomal pr 29.9 2E+02 0.0043 22.5 6.0 51 317-370 18-72 (82)
56 cd01143 YvrC Periplasmic bindi 29.2 1.4E+02 0.0031 26.3 5.9 52 319-370 53-111 (195)
57 COG4359 Uncharacterized conser 28.3 1.3E+02 0.0029 27.6 5.3 46 313-358 76-125 (220)
58 PF01248 Ribosomal_L7Ae: Ribos 28.2 1.5E+02 0.0034 23.2 5.3 53 315-370 20-77 (95)
59 PRK13601 putative L7Ae-like ri 26.4 2.4E+02 0.0052 22.1 5.9 50 318-370 16-69 (82)
60 PRK01018 50S ribosomal protein 25.7 2.4E+02 0.0053 22.8 6.1 50 317-369 23-77 (99)
61 PRK06683 hypothetical protein; 24.9 2.6E+02 0.0056 21.9 5.8 50 318-370 19-72 (82)
62 cd01144 BtuF Cobalamin binding 24.6 1.8E+02 0.0039 26.9 5.9 52 319-370 50-108 (245)
63 PRK07714 hypothetical protein; 24.5 2.6E+02 0.0056 22.5 6.1 51 317-370 25-79 (100)
64 PRK09534 btuF corrinoid ABC tr 23.9 1.7E+02 0.0036 29.5 5.9 53 318-370 111-170 (359)
65 TIGR03659 IsdE heme ABC transp 23.7 1.7E+02 0.0036 28.2 5.6 53 319-371 84-142 (289)
66 PRK07283 hypothetical protein; 22.9 2.8E+02 0.006 22.4 5.9 50 317-369 25-78 (98)
67 PRK05718 keto-hydroxyglutarate 21.2 4E+02 0.0086 24.8 7.3 57 317-375 78-135 (212)
68 TIGR03677 rpl7ae 50S ribosomal 20.8 3.4E+02 0.0074 22.7 6.2 52 315-369 31-87 (117)
69 PTZ00106 60S ribosomal protein 20.3 3.1E+02 0.0068 22.6 5.8 53 315-370 30-87 (108)
No 1
>KOG0361|consensus
Probab=100.00 E-value=4.1e-77 Score=570.64 Aligned_cols=362 Identities=35% Similarity=0.530 Sum_probs=346.6
Q ss_pred chhhccchhhhhhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHHHHHH
Q psy17549 47 PVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVD 126 (418)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~akll~~ 126 (418)
|..++|+|++.++|.-+..+|+.||..+++.++|||||+||||+|++.. |+++|||||+||||-|++.||+||.+++
T Consensus 5 ~ii~lkegtd~sqGk~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~---g~~tIsNDGATIlKlldivhPaaktlVd 81 (543)
T KOG0361|consen 5 PIILLKEGTDPSQGKGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSK---GKTTISNDGATILKLLDIVHPAAKTLVD 81 (543)
T ss_pred CEEEeecccCcccCchhhhhchHHHHHHHHHHHhccCccccceeeecCC---CcEEEecCcHHHHHHHhhcChhHHHHHH
Confidence 4567899999999999999999999999999999999999999999984 9999999999999999999999999999
Q ss_pred hhhhccccccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCC-chhhHHHHHHHHHh
Q psy17549 127 MSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLN-SEKFREDLLNIART 205 (418)
Q Consensus 127 ~~~~~~~~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~-~~~~~~~L~~ia~t 205 (418)
.+++||.++|||||||++|++|+|+++..+++.|+||+.|+++|++|...|++.++++++.++.. ....++.|+++|.|
T Consensus 82 ia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T 161 (543)
T KOG0361|consen 82 IARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAAT 161 (543)
T ss_pred HHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988743 23457889999999
Q ss_pred hccccccchhhHHHHHHHHHHHHHhhccCCCcceEEEEccCCCcccceeeeeEEEeccCCC----CCcceecCceEEEee
Q psy17549 206 TLSSKILSQHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQ----HQPKRIENAKLLIAN 281 (418)
Q Consensus 206 sl~sK~~~~~~~~ls~lvv~Av~~v~~~~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~----~~~~~i~n~kIlll~ 281 (418)
+++||+..++.++|+++++||+..++...++++|-|.|++||+++||.+++|+.|++.|++ .+|+++.||||+++|
T Consensus 162 ~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl~Ln 241 (543)
T KOG0361|consen 162 ALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLN 241 (543)
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccchhhhccceeeeehccccchhhCccccCCceEEEEe
Confidence 9999999999999999999999999877788999999999999999999999999999986 589999999999999
Q ss_pred cccccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcCceEEecCCHHHHH
Q psy17549 282 TPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIE 361 (418)
Q Consensus 282 ~~Le~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~~~~L~ 361 (418)
.+||.+..+.+ +++++.++++++.+.++||+.+.+++++|++.|+|||++...|.|+|.|||++++|.|..||+.+||.
T Consensus 242 vELElKaEkdN-AEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~~eDl~ 320 (543)
T KOG0361|consen 242 VELELKAEKDN-AEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLN 320 (543)
T ss_pred eeeeecccccC-ceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCCHHHHH
Confidence 99999777664 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeeccccCCCCCCCceeeeeEEEEEECceeEEEEee------eeEEEeCC
Q psy17549 362 RLALVTGGEIVSTFDNPDQVKLGKCDLIEEVCLWTKNVTGPTV------STYSISGF 412 (418)
Q Consensus 362 ria~~tGa~iv~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~------~t~~l~g~ 412 (418)
|+..+||++++++.+++.++.||.|+.|||+++|+++|.+|+| ||++|||+
T Consensus 321 Rv~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~aktcTliLRGg 377 (543)
T KOG0361|consen 321 RVMQACGGSIQTTVSDIKEEVLGTCALFEERQVGGERYNLFEGCPKAKTCTLILRGG 377 (543)
T ss_pred HHHHhcCcchhhhhhhcchhhcchhhhHHHHhhcchhhhhhcCCCccceeEEEEecc
Confidence 9999999999999999999999999999999999999999996 69999996
No 2
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.3e-74 Score=602.07 Aligned_cols=362 Identities=75% Similarity=1.071 Sum_probs=341.6
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHHHHHHhhhh
Q psy17549 51 LKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSKV 130 (418)
Q Consensus 51 ~~~~~~~~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~akll~~~~~~ 130 (418)
++++.+.+++.+++..|+.||..++++++|||||+||+|||+++.. +|+++|||||+||+++|+++||+|+|++++|++
T Consensus 2 ~~~~~~~~~~~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~-~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~ 80 (517)
T cd03336 2 LKDGAQEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGR-SGGVTVTNDGATILKSIGVDNPAAKVLVDISKV 80 (517)
T ss_pred CCCccccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCC-CCCeEEeccHHHHHHHccCcChHHHHHHHHHHH
Confidence 4566778899999999999999999999999999999999999710 299999999999999999999999999999999
Q ss_pred ccccccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHhhcccc
Q psy17549 131 QDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSK 210 (418)
Q Consensus 131 ~~~~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~tsl~sK 210 (418)
|++++||||||+++|+++||++|.+|+++|+||+.|++||+.|.+.++++|++++++++.+...+++.|.++|+|+++||
T Consensus 81 qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk 160 (517)
T cd03336 81 QDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSK 160 (517)
T ss_pred HHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999875332234678999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHhhccCCCcceEEEEccCCCcccceeeeeEEEeccCCCCCcceecCceEEEeeccccccccc
Q psy17549 211 ILSQHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQPKRIENAKLLIANTPMDTDKIK 290 (418)
Q Consensus 211 ~~~~~~~~ls~lvv~Av~~v~~~~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~~~~~~i~n~kIlll~~~Le~~k~e 290 (418)
+.++++++|++++++|+..+++.+++++|++++++||++++|++++|+++++++.+.||++++||||++++++||+++++
T Consensus 161 ~~~~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~~~~~~~~n~kIli~~~~le~~~~~ 240 (517)
T cd03336 161 ILTQDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGVNQPKRIENAKILIANTPMDTDKIK 240 (517)
T ss_pred ccchhHHHHHHHHHHHHHHhhccCCccceeEEEccCCCccceEEEeeEEEecccCCCCCCeeccccEEEEecCCCccccc
Confidence 99999999999999999999878889999999999999999999999999999877789999999999999999999998
Q ss_pred ccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcCceEEecCCHHHHHHHHHHhCCe
Q psy17549 291 VFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVTGGE 370 (418)
Q Consensus 291 ~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~~~~L~ria~~tGa~ 370 (418)
.+++++.+++++++..+.+.|+++++++++.|++.|+++++++++|+|.+++||+++||++++++++++|+|||++|||+
T Consensus 241 ~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~~tGa~ 320 (517)
T cd03336 241 IFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLALVTGGE 320 (517)
T ss_pred ccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCE
Confidence 75578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCCCCCCceeeeeEEEEEECceeEEEEee------eeEEEeCCC
Q psy17549 371 IVSTFDNPDQVKLGKCDLIEEVCLWTKNVTGPTV------STYSISGFR 413 (418)
Q Consensus 371 iv~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~------~t~~l~g~~ 413 (418)
+++++++++++++|+|+.|++..+|+++|++|++ ||++|||..
T Consensus 321 ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t 369 (517)
T cd03336 321 IASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAGEACTIVLRGAS 369 (517)
T ss_pred EecccCCCCcccccccceEEEEEECCeEEEEEEccCCCceEEEEEeCCC
Confidence 9999999999999999999999999999999984 699999954
No 3
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=3.6e-74 Score=604.36 Aligned_cols=367 Identities=69% Similarity=1.032 Sum_probs=346.2
Q ss_pred chhhccchhhhhhhHHHHHHHHHHHHHHHHhhhhccCccccccccccccc-C-CCCeEEccCHHHHHHhccccChHHHHH
Q psy17549 47 PVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGR-N-SGQVEITNDGATILKSVGVDNPAAKIL 124 (418)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~-~-~g~v~iTnDG~tIl~~l~~~hP~akll 124 (418)
|..+++++++.++|++++..|+.||..++++++|||||+||+|||+++.+ + .|+++|||||+||+++|+++||+|+|+
T Consensus 7 ~~~~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~akll 86 (533)
T PTZ00212 7 PPQVLKQGAQEEKGETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPAAKIL 86 (533)
T ss_pred chHHhcCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHHHHHH
Confidence 44578999899999999999999999999999999999999999999710 0 199999999999999999999999999
Q ss_pred HHhhhhccccccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHH
Q psy17549 125 VDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIAR 204 (418)
Q Consensus 125 ~~~~~~~~~~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~ 204 (418)
+++|++|++++||||||+++||++||++|.+|+++|+||+.|++||+.|++.++++|+++++++..++..+.+.|.++|+
T Consensus 87 ~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~ 166 (533)
T PTZ00212 87 VDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIAR 166 (533)
T ss_pred HHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999886543334678999999
Q ss_pred hhccccccchhhHHHHHHHHHHHHHhhccCCCcceEEEEccCCCcccceeeeeEEEeccCCCCCcceecCceEEEeeccc
Q psy17549 205 TTLSSKILSQHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQPKRIENAKLLIANTPM 284 (418)
Q Consensus 205 tsl~sK~~~~~~~~ls~lvv~Av~~v~~~~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~~~~~~i~n~kIlll~~~L 284 (418)
|+++||+.+.+.+.|++++++|+..+...+++++|++++++||+++||++++|+++++++.+.||++++||||++++++|
T Consensus 167 t~l~sk~~~~~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~~~~~~i~n~kIll~~~~L 246 (533)
T PTZ00212 167 TTLSSKLLTVEKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGVGQPKRLENCKILVANTPM 246 (533)
T ss_pred HHhcccccchhHHHHHHHHHHHHHHHhccCCccceEEEEecCcCccccEEEEeEEEecccCCCCCccccCCcEEEEeCCC
Confidence 99999999999999999999999999877889999999999999999999999999999877899999999999999999
Q ss_pred ccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcCceEEecCCHHHHHHHH
Q psy17549 285 DTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLA 364 (418)
Q Consensus 285 e~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~~~~L~ria 364 (418)
|+++++.+++++.+++++++..++++|+++++++++.|++.|+++|+++++|+|.+++||.++||++++|+++++++|||
T Consensus 247 e~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~v~~~~l~rIa 326 (533)
T PTZ00212 247 DTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHADFDGMERLA 326 (533)
T ss_pred CCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEecCCHHHHHHHH
Confidence 99999875688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeeccccCCCCCCCceeeeeEEEEEECceeEEEEee------eeEEEeCCC
Q psy17549 365 LVTGGEIVSTFDNPDQVKLGKCDLIEEVCLWTKNVTGPTV------STYSISGFR 413 (418)
Q Consensus 365 ~~tGa~iv~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~------~t~~l~g~~ 413 (418)
++|||++++++++++++++|+|+.|++..+|+++|++|++ ||++|||.+
T Consensus 327 ~~tGa~iis~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t 381 (533)
T PTZ00212 327 AALGAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAKGEACTIVLRGAS 381 (533)
T ss_pred HHhCCEEeecCCCCCHHHccCCceEEEEEECCeEEEEEEccCCCCEEEEEEECCC
Confidence 9999999999999999999999999999999999999985 599999964
No 4
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=1.4e-73 Score=598.98 Aligned_cols=357 Identities=37% Similarity=0.540 Sum_probs=340.0
Q ss_pred hccchhhhhhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHHHHHHhhh
Q psy17549 50 ILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSK 129 (418)
Q Consensus 50 ~~~~~~~~~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~akll~~~~~ 129 (418)
+++++.+.++|.+++..|++||..++++++|||||+||+|||+++ .|+++|||||+||+++|+++||+|+|++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~---~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~ 80 (519)
T TIGR02339 4 ILKEGTQRTKGRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDS---LGDVTITNDGATILKEMDIEHPAAKMLVEVAK 80 (519)
T ss_pred cccCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECC---CCCEEEEccHHHHHHhccCCCHHHHHHHHHHH
Confidence 467888889999999999999999999999999999999999999 59999999999999999999999999999999
Q ss_pred hccccccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHhhccc
Q psy17549 130 VQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSS 209 (418)
Q Consensus 130 ~~~~~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~tsl~s 209 (418)
+|++++||||||+++|+++|++++.+|+++|+||+.|++||+.|++.++++|++++++++.+ +++.|.++|+|+++|
T Consensus 81 ~qd~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~---~~~~L~~ia~tsl~s 157 (519)
T TIGR02339 81 TQDAEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPE---DRDLLKKVAETSLTG 157 (519)
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcc---cHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999987643 257899999999999
Q ss_pred ccc-chhhHHHHHHHHHHHHHhhc-------cCCCcceEEEEccCCCcccceeeeeEEEeccCCC-CCcceecCceEEEe
Q psy17549 210 KIL-SQHKEYFSKLAVDAVLRLKG-------SGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQ-HQPKRIENAKLLIA 280 (418)
Q Consensus 210 K~~-~~~~~~ls~lvv~Av~~v~~-------~~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~-~~~~~i~n~kIlll 280 (418)
|+. +.+.+.|++++++|+.++++ .+|+++|+|++++||++++|++++|++|++++.+ +||++++||||+++
T Consensus 158 k~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~m~~~i~n~kIlll 237 (519)
T TIGR02339 158 KASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPVHPGMPKRVKNAKIALL 237 (519)
T ss_pred ccccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcceeEeeEEEecCCCCCCCccccCCCcEEEE
Confidence 999 78999999999999999863 3678899999999999999999999999999864 79999999999999
Q ss_pred ecccccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcCceEEecCCHHHH
Q psy17549 281 NTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGI 360 (418)
Q Consensus 281 ~~~Le~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~~~~L 360 (418)
+++||+++++.+ +++.+++++++.++.++|++++++++++|.+.|+++|+++++|+|.+++||.++||++++++++++|
T Consensus 238 ~~~Le~~~~~~~-~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L 316 (519)
T TIGR02339 238 DAPLEVEKTEID-AKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDI 316 (519)
T ss_pred eccccccccccc-eEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHH
Confidence 999999999985 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeeccccCCCCCCCceeeeeEEEEEECceeEEEEee------eeEEEeCCC
Q psy17549 361 ERLALVTGGEIVSTFDNPDQVKLGKCDLIEEVCLWTKNVTGPTV------STYSISGFR 413 (418)
Q Consensus 361 ~ria~~tGa~iv~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~------~t~~l~g~~ 413 (418)
+|||++|||++++++++++++++|+|++|+++++|+++|++|++ ||++|||..
T Consensus 317 ~rIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t 375 (519)
T TIGR02339 317 EKLARATGAKIVSSIKEITESDLGYAGLVEERKVGDDKMTFVEGCKNPKAVTILLRGGT 375 (519)
T ss_pred HHHHHHhCCEEeCchhhCChhhccCCceEEEEEECCeEEEEEEcCCCCCEEEEEEECCC
Confidence 99999999999999999999999999999999999999999985 599999965
No 5
>KOG0363|consensus
Probab=100.00 E-value=1.3e-74 Score=550.31 Aligned_cols=367 Identities=77% Similarity=1.082 Sum_probs=355.4
Q ss_pred cchhhccchhhhhhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHHHHH
Q psy17549 46 NPVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILV 125 (418)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~akll~ 125 (418)
.|+.++++++.+++|++||.+.+.++..+.|+++|||||+||+||++...+ .|.+.|||||+|||+++.+.+|+||+|+
T Consensus 2 ~p~~i~~~~~~eErge~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~-~~~v~VTNDGAtILksi~vDnpaAkvLv 80 (527)
T KOG0363|consen 2 NPVQIFKDGATEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGR-AGTVMVTNDGATILKSIGVDNPAAKVLV 80 (527)
T ss_pred ChhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCC-CCceEEecchHHHHHhcCCCCchhhhee
Confidence 578899999999999999999999999999999999999999999997642 5789999999999999999999999999
Q ss_pred HhhhhccccccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHh
Q psy17549 126 DMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIART 205 (418)
Q Consensus 126 ~~~~~~~~~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~t 205 (418)
+.++-||+++|||||+|++|+++||++|.+|+...+||+.|+.||+.|...|.+.|.+.+++...+...++++|+++++|
T Consensus 81 ~~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarT 160 (527)
T KOG0363|consen 81 DISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIART 160 (527)
T ss_pred ccccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988776666889999999999
Q ss_pred hccccccchhhHHHHHHHHHHHHHhhccCCCcceEEEEccCCCcccceeeeeEEEeccCCCCCcceecCceEEEeecccc
Q psy17549 206 TLSSKILSQHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQPKRIENAKLLIANTPMD 285 (418)
Q Consensus 206 sl~sK~~~~~~~~ls~lvv~Av~~v~~~~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~~~~~~i~n~kIlll~~~Le 285 (418)
+|+||+.+++.++|++|+++|+.++.+..+++.|+|+|+.||+++||++-+||++++.+..++|++++||||++-|.+++
T Consensus 161 TL~SKiLsq~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~dSfLDeGFlL~K~igv~qpkriena~iLIANT~mD 240 (527)
T KOG0363|consen 161 TLSSKILSQDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLEDSFLDEGFLLDKKIGVNQPKRIENAKILIANTPMD 240 (527)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCccccccccccceeccccCCCCcccccccceEEecCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred cccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcCceEEecCCHHHHHHHHH
Q psy17549 286 TDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLAL 365 (418)
Q Consensus 286 ~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~~~~L~ria~ 365 (418)
.+|.+.+++.+++++...+.+++.+|+++++.++++|.++|+|+.++.+-|.++..|+|+..||++++...++-+||++.
T Consensus 241 tDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiERLal 320 (527)
T KOG0363|consen 241 TDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHADFDGIERLAL 320 (527)
T ss_pred ccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeecccchhHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeeccccCCCCCCCceeeeeEEEEEECceeEEEEee------eeEEEeCCC
Q psy17549 366 VTGGEIVSTFDNPDQVKLGKCDLIEEVCLWTKNVTGPTV------STYSISGFR 413 (418)
Q Consensus 366 ~tGa~iv~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~------~t~~l~g~~ 413 (418)
+||+.|+++|++++..++|+|+.++++.||++++++|+| ||+.|||..
T Consensus 321 vtGGeI~STFd~p~~~klG~C~~IeeimiGed~li~FSGv~~GeActIVlrGat 374 (527)
T KOG0363|consen 321 VTGGEIVSTFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKLGEACTIVLRGAT 374 (527)
T ss_pred cccceeeeccCCcchhccccchhhHHHhcCccceeeecccccccceEEEEeccc
Confidence 999999999999999999999999999999999999985 899999964
No 6
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=8e-73 Score=593.68 Aligned_cols=361 Identities=39% Similarity=0.540 Sum_probs=341.7
Q ss_pred hhccchhhhhhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHHHHHHhh
Q psy17549 49 RILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMS 128 (418)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~akll~~~~ 128 (418)
.+++++++.+++.+++.+|+.||..+++++++||||+||+|||+++ .|+++|||||+||+++|+++||+|+|+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~---~g~~~iTnDG~tIlk~l~~~hP~akll~~~a 79 (522)
T cd03340 3 ILLKEGTDTSQGKGQLISNINACQAIADAVRTTLGPRGMDKLIVDG---RGKVTISNDGATILKLLDIVHPAAKTLVDIA 79 (522)
T ss_pred ccccCCcccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcC---CCCEEEeccHHHHHHHccccCHHHHHHHHHH
Confidence 3578888889999999999999999999999999999999999998 5999999999999999999999999999999
Q ss_pred hhccccccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCc-hhhHHHHHHHHHhhc
Q psy17549 129 KVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNS-EKFREDLLNIARTTL 207 (418)
Q Consensus 129 ~~~~~~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~-~~~~~~L~~ia~tsl 207 (418)
++|++++||||||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|+++++++..++ ..+++.|.++++|++
T Consensus 80 ~~q~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l 159 (522)
T cd03340 80 KSQDAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATAL 159 (522)
T ss_pred HHhHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999876432 123577999999999
Q ss_pred cccccchhhHHHHHHHHHHHHHhhccCCCcceEEEEccCCCcccceeeeeEEEeccCCC----CCcceecCceEEEeecc
Q psy17549 208 SSKILSQHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQ----HQPKRIENAKLLIANTP 283 (418)
Q Consensus 208 ~sK~~~~~~~~ls~lvv~Av~~v~~~~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~----~~~~~i~n~kIlll~~~ 283 (418)
+||+.+.+.++|++++++|+..+++++|+++|+|++++||+++||++++|++|++++.+ .||++++||||++++++
T Consensus 160 ~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~~~ 239 (522)
T cd03340 160 NSKLIASEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVE 239 (522)
T ss_pred ccCcchhHHHHHHHHHHHHHHHhcccCChhHheEeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEEEEeCC
Confidence 99999999999999999999999888899999999999999999999999999999863 46899999999999999
Q ss_pred cccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcCceEEecCCHHHHHHH
Q psy17549 284 MDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERL 363 (418)
Q Consensus 284 Le~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~~~~L~ri 363 (418)
||+++++.+ .++.+++++++..+.+.|++++++++++|.+.|+++|+|+++|+|.+++||.++||++++|+++++|+||
T Consensus 240 Le~~~~~~~-~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~l~rI 318 (522)
T cd03340 240 LELKAEKDN-AEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKRV 318 (522)
T ss_pred CCCCccccc-eEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHH
Confidence 999998874 7889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeeccccCCCCCCCceeeeeEEEEEECceeEEEEee------eeEEEeCCC
Q psy17549 364 ALVTGGEIVSTFDNPDQVKLGKCDLIEEVCLWTKNVTGPTV------STYSISGFR 413 (418)
Q Consensus 364 a~~tGa~iv~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~------~t~~l~g~~ 413 (418)
|++|||++++++++++++++|+|+.|+++++|+++|++|++ ||++|||..
T Consensus 319 a~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t 374 (522)
T cd03340 319 AQATGGSIQTTVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKAKTCTIILRGGA 374 (522)
T ss_pred HHHHCCEEeeccccCCccccccceEEEEEEECCEEEEEEECCCCCceEEEEEECCC
Confidence 99999999999999999999999999999999999999985 599999964
No 7
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.1e-72 Score=588.96 Aligned_cols=363 Identities=76% Similarity=1.085 Sum_probs=341.3
Q ss_pred hccchhhhhhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHHHHHHhhh
Q psy17549 50 ILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSK 129 (418)
Q Consensus 50 ~~~~~~~~~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~akll~~~~~ 129 (418)
+++++.+.+++.+++..|+.|+..++++++|||||+||+|||+++.. .|+++|||||+||+++|+++||+|+|++++|+
T Consensus 2 ~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~-~G~~~iTnDG~tIlk~l~i~hP~akll~~~a~ 80 (519)
T TIGR02341 2 IFKDNAQEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSS-ESGIMVTNDGATILKSIGVDNPAAKVLVDMSK 80 (519)
T ss_pred CccCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCC-CCCeEEeccHHHHHHHccCcChHHHHHHHHHH
Confidence 45777788999999999999999999999999999999999999720 18999999999999999999999999999999
Q ss_pred hccccccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHhhccc
Q psy17549 130 VQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSS 209 (418)
Q Consensus 130 ~~~~~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~tsl~s 209 (418)
+|++++||||||+++|+++||++|.+|++.|+||+.|++||+.|++.++++|++++++++.+...++++|.++++|++++
T Consensus 81 ~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~s 160 (519)
T TIGR02341 81 VQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSS 160 (519)
T ss_pred HhHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999988643222467899999999999
Q ss_pred cccchhhHHHHHHHHHHHHHhhccCCCcceEEEEccCCCcccceeeeeEEEeccCCCCCcceecCceEEEeecccccccc
Q psy17549 210 KILSQHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQPKRIENAKLLIANTPMDTDKI 289 (418)
Q Consensus 210 K~~~~~~~~ls~lvv~Av~~v~~~~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~~~~~~i~n~kIlll~~~Le~~k~ 289 (418)
|+.+.+.+.|++++++|+..+....++++|++++++|+++++|++++|+++++++.++||++++||||++++++|+++++
T Consensus 161 ki~~~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~~~~~~~~n~~Ili~~~~Le~~~~ 240 (519)
T TIGR02341 161 KILSQHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLNDSYLDEGFLLEKKIGVNQPKRIENAKILIANTPMDTDKV 240 (519)
T ss_pred hhhhhHHHHHHHHHHHHHHHhccCCChhheEEEEccCCCcccceEEeeEEEeccCCCCCceeeccccEEEEecCCCCCcc
Confidence 99999999999999999999866677889999999999999999999999999987788999999999999999999998
Q ss_pred cccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcCceEEecCCHHHHHHHHHHhCC
Q psy17549 290 KVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVTGG 369 (418)
Q Consensus 290 e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~~~~L~ria~~tGa 369 (418)
+.+.+++.+++++++..+.+.|+++++++++.|++.|+++++++++|+|.+++||.++||++++++++++|+|||++|||
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l~~ia~~tGa 320 (519)
T TIGR02341 241 KVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLALVTGG 320 (519)
T ss_pred ccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCC
Confidence 86447899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCCCCCCceeeeeEEEEEECceeEEEEee------eeEEEeCCC
Q psy17549 370 EIVSTFDNPDQVKLGKCDLIEEVCLWTKNVTGPTV------STYSISGFR 413 (418)
Q Consensus 370 ~iv~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~------~t~~l~g~~ 413 (418)
++++++++++++++|+|+.|+++.+|+++|++|++ ||+++||..
T Consensus 321 ~ii~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t 370 (519)
T TIGR02341 321 EIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKLGEACTIVLRGAT 370 (519)
T ss_pred EEecccccCCccccccCceEEEEEECCEEEEEEEcCCCCCEEEEEEeCCC
Confidence 99999999999999999999999999999999984 699999954
No 8
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.4e-72 Score=592.26 Aligned_cols=357 Identities=28% Similarity=0.454 Sum_probs=337.1
Q ss_pred hccchhhhhhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHHHHHHhhh
Q psy17549 50 ILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSK 129 (418)
Q Consensus 50 ~~~~~~~~~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~akll~~~~~ 129 (418)
+++++.+..++.+++..|+.||..++++++|||||+||+|||+++ .|+++|||||+|||++|+++||+|+|++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~---~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~ 80 (525)
T TIGR02344 4 VLNQNTKRESGRKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDP---MGGIVMTNDGNAILREIDVAHPAAKSMIELSR 80 (525)
T ss_pred eccCCCccccHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcC---CCCEEEEccHHHHHHhccCCCHHHHHHHHHHH
Confidence 457777889999999999999999999999999999999999998 59999999999999999999999999999999
Q ss_pred hccccccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHhhccc
Q psy17549 130 VQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSS 209 (418)
Q Consensus 130 ~~~~~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~tsl~s 209 (418)
+|++++||||||+++|+++||++|.+|+++|+||+.|++||+.|++.++++|++++++++.++ .+.|.++++|+++|
T Consensus 81 ~q~~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~---~~~l~~i~~t~l~s 157 (525)
T TIGR02344 81 TQDEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVND---DAAMLKLIQSCIGT 157 (525)
T ss_pred hhhhhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCC---HHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999999999876432 47799999999999
Q ss_pred cccchhhHHHHHHHHHHHHHhhcc-------CCCc-ceEEEEccCCCcccceeeeeEEEeccCCC-CCcceecCceEEEe
Q psy17549 210 KILSQHKEYFSKLAVDAVLRLKGS-------GNLS-AIQIIKKKGGCLEDSFLDEGFLLDKKIGQ-HQPKRIENAKLLIA 280 (418)
Q Consensus 210 K~~~~~~~~ls~lvv~Av~~v~~~-------~~~~-~I~I~ki~Ggs~~dS~lv~Givl~~~~~~-~~~~~i~n~kIlll 280 (418)
|+.++|.+.|++++++|+..++++ +|++ +|+|.+++||+++||++++|++|++++.+ .||++++||||+++
T Consensus 158 k~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~m~~~~~n~kIlll 237 (525)
T TIGR02344 158 KFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPKMRRYIENPRIVLL 237 (525)
T ss_pred ccchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCCCCccccCCCCEEEE
Confidence 999999999999999999999642 2333 48999999999999999999999999865 79999999999999
Q ss_pred ecccccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcCceEEecCCHHHH
Q psy17549 281 NTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGI 360 (418)
Q Consensus 281 ~~~Le~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~~~~L 360 (418)
+++|++++++.+ +++.+++++++.++.++|++++++++++|.+.|++||+|+++|+|.+++||.++||++++|+++++|
T Consensus 238 ~~~Le~~~~~~~-~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~L 316 (525)
T TIGR02344 238 DCPLEYKKGESQ-TNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDN 316 (525)
T ss_pred eccccccccccc-ceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHH
Confidence 999999999885 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeeccccCCCCCCCcee-eeeEEEEEECceeEEEEee------eeEEEeCCC
Q psy17549 361 ERLALVTGGEIVSTFDNPDQVKLGK-CDLIEEVCLWTKNVTGPTV------STYSISGFR 413 (418)
Q Consensus 361 ~ria~~tGa~iv~~l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~------~t~~l~g~~ 413 (418)
+|||++|||++++++++++++++|+ |+.|+++++|+++|++|++ ||++|||..
T Consensus 317 erIa~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~~~~TIlLrG~t 376 (525)
T TIGR02344 317 NRIARACGATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDPKACTILLRGAS 376 (525)
T ss_pred HHHHHHhCCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCCCEEEEEEEcCC
Confidence 9999999999999999999999999 9999999999999999985 599999954
No 9
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.7e-72 Score=591.20 Aligned_cols=363 Identities=35% Similarity=0.529 Sum_probs=340.2
Q ss_pred cchhhccc--hhhhhhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHHH
Q psy17549 46 NPVRILKH--EAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKI 123 (418)
Q Consensus 46 ~~~~~~~~--~~~~~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~akl 123 (418)
.|+.++++ +.+.++|.+++..|++||..++++++|||||+||+|||+++ .|+++|||||+||+++|+++||+|+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~---~G~~~ITnDG~tIlk~l~~~hP~akl 85 (532)
T TIGR02343 9 RPFIIIKDQDKKKRLKGLEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSP---DGDITVTNDGATILSQMDVDNPIAKL 85 (532)
T ss_pred CCchhhccccccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcC---CCCEEEeCcHHHHHHHccCCCHHHHH
Confidence 34456677 56788999999999999999999999999999999999998 49999999999999999999999999
Q ss_pred HHHhhhhccccccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHH
Q psy17549 124 LVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIA 203 (418)
Q Consensus 124 l~~~~~~~~~~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia 203 (418)
++++|++|++++||||||+++|+++||++|.+|+++|+||+.|++||+.|++.++++|+++++++..+. .+++.|.+++
T Consensus 86 l~~~a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~-~~~~~l~~ia 164 (532)
T TIGR02343 86 MVELSKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDN-NNKEPLIQAA 164 (532)
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCC-CCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999875431 2357899999
Q ss_pred HhhccccccchhhHHHHHHHHHHHHHhhc----cCCCcceEEEEccCCCcccceeeeeEEEeccCCC-CCcceecCceEE
Q psy17549 204 RTTLSSKILSQHKEYFSKLAVDAVLRLKG----SGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQ-HQPKRIENAKLL 278 (418)
Q Consensus 204 ~tsl~sK~~~~~~~~ls~lvv~Av~~v~~----~~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~-~~~~~i~n~kIl 278 (418)
+|++++|+.+.+.+.|++++++|+..+.. ++|+++|+|+|++||+++||++++|++|++++.+ .||+.++||||+
T Consensus 165 ~t~l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m~~~~~n~kI~ 244 (532)
T TIGR02343 165 KTSLGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAKIA 244 (532)
T ss_pred HHhhccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccceeEeeEEEecCcCCCCCCeeecCCcEE
Confidence 99999999888999999999999998842 4788999999999999999999999999999864 799999999999
Q ss_pred EeecccccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcCceEEecCCHH
Q psy17549 279 IANTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFD 358 (418)
Q Consensus 279 ll~~~Le~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~~~ 358 (418)
+++++||+++++++ .++.+++++++..+.+.|+++++.++++|.+.|+++|+|+++|+|.+++||.++||++++|++++
T Consensus 245 l~~~~le~~~~~~~-~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~~ 323 (532)
T TIGR02343 245 ILTCPFEPPKPKTK-HKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGH 323 (532)
T ss_pred EEEeeccccccccc-eeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCHH
Confidence 99999999999875 78889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCeeccccCCCCCCCceeeeeEEEEEECc--eeEEEEee------eeEEEeCCC
Q psy17549 359 GIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEVCLWT--KNVTGPTV------STYSISGFR 413 (418)
Q Consensus 359 ~L~ria~~tGa~iv~~l~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~------~t~~l~g~~ 413 (418)
+|+|||++|||++++++++++++++|+|+.|+++++|+ ++|++|++ ||+++||..
T Consensus 324 ~l~~Ia~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~~~~TIllrG~t 386 (532)
T TIGR02343 324 ELELIAIATGGRIVPRFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNSKAVTIFIRGGN 386 (532)
T ss_pred HHHHHHHHhCCEEecccccCCHhHCcccceEEEEEecCCcceEEEEECCCCCCEEEEEEECCC
Confidence 99999999999999999999999999999999999998 48999985 599999954
No 10
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.2e-72 Score=586.67 Aligned_cols=359 Identities=31% Similarity=0.445 Sum_probs=337.3
Q ss_pred hhccchhhhhhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHHHHHHhh
Q psy17549 49 RILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMS 128 (418)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~akll~~~~ 128 (418)
.+++++.+...+.+++..|+.||..++++++|||||+||+|||+++ .|+++|||||+||+++|+++||+++|++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~---~G~~~ITnDG~TIlk~i~i~hP~a~ll~~~a 79 (531)
T TIGR02347 3 KLLNPKAESLRRDAALMMNINAARGLQDVLKTNLGPKGTLKMLVSG---AGDIKLTKDGNVLLNEMQIQHPTASMIARAA 79 (531)
T ss_pred ccccCCcccccHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcC---CCCEEEeccHHHHHHhccccChHHHHHHHHH
Confidence 3567788889999999999999999999999999999999999999 5999999999999999999999999999999
Q ss_pred hhccccccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHhhcc
Q psy17549 129 KVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLS 208 (418)
Q Consensus 129 ~~~~~~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~tsl~ 208 (418)
++|++++||||||+++||++||++|.+|+++|+||+.|++||+.|++.++++|++++++.... .+.+.|.++++|+++
T Consensus 80 ~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~--~~~~~l~~ia~tsl~ 157 (531)
T TIGR02347 80 TAQDDITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDE--VDRELLLNVARTSLR 157 (531)
T ss_pred HHhhhhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCC--CCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999765311 125789999999999
Q ss_pred ccccchhhHHHHHHHHHHHHHhhcc---CCCcceEEEEccCCCcccceeeeeEEEeccCCC-CCcceecCceEEEeeccc
Q psy17549 209 SKILSQHKEYFSKLAVDAVLRLKGS---GNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQ-HQPKRIENAKLLIANTPM 284 (418)
Q Consensus 209 sK~~~~~~~~ls~lvv~Av~~v~~~---~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~-~~~~~i~n~kIlll~~~L 284 (418)
||+.++++++|++++++|+..++++ +++++|+++++.||++++|++++|++|++++.+ .||++++||||++++++|
T Consensus 158 sK~~~~~~~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~~~~~~n~~Ill~~~~l 237 (531)
T TIGR02347 158 TKLPIDLADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSL 237 (531)
T ss_pred cccchhhHHHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCCccccEEEeeEEEecCcCCCCCceeccCceEEEEeCCC
Confidence 9999999999999999999999753 677789999999999999999999999999864 799999999999999999
Q ss_pred ccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccC-------ce---EEEeccccccchHHHHHHcCceEEec
Q psy17549 285 DTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHN-------AN---VFINRQLIYNYPEQLFADAGVMAIEH 354 (418)
Q Consensus 285 e~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~g-------v~---vVl~~~~I~d~a~~~l~~~gI~vv~~ 354 (418)
++.+++.+ +.+.+++++++..+.+.|++++++++++|.+.+ ++ +|+|+++|+|.+++||.++||++++|
T Consensus 238 e~~~~~~~-~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~r 316 (531)
T TIGR02347 238 EYEKTEVN-SGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALRR 316 (531)
T ss_pred CCCccccC-ceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEcc
Confidence 99998885 789999999999999999999999999999866 25 99999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCeeccccCCCCCCCceeeeeEEEEEECceeEEEEee------eeEEEeCCC
Q psy17549 355 ADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEVCLWTKNVTGPTV------STYSISGFR 413 (418)
Q Consensus 355 v~~~~L~ria~~tGa~iv~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~------~t~~l~g~~ 413 (418)
+++++|+|||++|||++++++++++++++|+|+.|+++.+|+++|++|++ ||+++||..
T Consensus 317 v~~~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TI~lrG~t 381 (531)
T TIGR02347 317 AKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNPKSCTILIKGPN 381 (531)
T ss_pred CCHHHHHHHHHHhCCEEecccccCCccccccceEEEEEEECCeEEEEEEcCCCCCeEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999985 599999964
No 11
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.3e-72 Score=587.10 Aligned_cols=362 Identities=36% Similarity=0.533 Sum_probs=338.6
Q ss_pred chhhccch--hhhhhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHHHH
Q psy17549 47 PVRILKHE--AEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKIL 124 (418)
Q Consensus 47 ~~~~~~~~--~~~~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~akll 124 (418)
|+.+++++ .+..+|.+++..|++||..++++++|||||+||+|||+++ .|+++|||||+||+++|+++||+|+|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~---~G~~~iTnDG~tIlk~l~~~hP~akll 82 (526)
T cd03339 6 PFIIVREQEKKKRLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVSP---DGEVTVTNDGATILEKMDVDHQIAKLL 82 (526)
T ss_pred CeEEecCCCccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECC---CCCEEEeCcHHHHHHHhcccCHHHHHH
Confidence 43456776 4688999999999999999999999999999999999999 599999999999999999999999999
Q ss_pred HHhhhhccccccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHH
Q psy17549 125 VDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIAR 204 (418)
Q Consensus 125 ~~~~~~~~~~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~ 204 (418)
+++|++|++++||||||+++||++||++|.+|+++|+||+.|++||+.|++.++++|++++++++.+. .+.+.|.++++
T Consensus 83 ~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~-~~~~~l~~ia~ 161 (526)
T cd03339 83 VELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSP-DNKEPLIQTAM 161 (526)
T ss_pred HHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCc-ccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999876431 23578999999
Q ss_pred hhccccccchhhHHHHHHHHHHHHHhhc----cCCCcceEEEEccCCCcccceeeeeEEEeccCCC-CCcceecCceEEE
Q psy17549 205 TTLSSKILSQHKEYFSKLAVDAVLRLKG----SGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQ-HQPKRIENAKLLI 279 (418)
Q Consensus 205 tsl~sK~~~~~~~~ls~lvv~Av~~v~~----~~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~-~~~~~i~n~kIll 279 (418)
|++++|+.+.+.+.|++++++|+..+.. ++|+++|+|+|++||+++||++++|++|++++.+ +||+.++||||++
T Consensus 162 tsl~sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m~~~~~n~kI~l 241 (526)
T cd03339 162 TSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAI 241 (526)
T ss_pred HhhcccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHcceeeeEEEecccCCCCCCceecCCCEEE
Confidence 9999999888999999999999998853 4567899999999999999999999999999874 7999999999999
Q ss_pred eecccccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcCceEEecCCHHH
Q psy17549 280 ANTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDG 359 (418)
Q Consensus 280 l~~~Le~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~~~~ 359 (418)
++++||+++++++ +++.+++++++.++.++|++++++++++|.+.|+++|+++++|+|.+++||.++||++++++++++
T Consensus 242 l~~~le~~~~~~~-~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~~ 320 (526)
T cd03339 242 LTCPFEPPKPKTK-HKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVE 320 (526)
T ss_pred EEecccCCccccc-eEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHHH
Confidence 9999999999864 778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeeccccCCCCCCCceeeeeEEEEEECc--eeEEEEee------eeEEEeCCC
Q psy17549 360 IERLALVTGGEIVSTFDNPDQVKLGKCDLIEEVCLWT--KNVTGPTV------STYSISGFR 413 (418)
Q Consensus 360 L~ria~~tGa~iv~~l~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~------~t~~l~g~~ 413 (418)
|+|||++|||++++++++++++++|+|+.|+++++|+ ++|+||++ ||++|||..
T Consensus 321 LerIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~~~~TIllrG~t 382 (526)
T cd03339 321 IELIAIATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNSKAVTIFIRGGN 382 (526)
T ss_pred HHHHHHHhCCEEecchhhCChhhcccCceEEEEEecCCCcEEEEEECCCCCCEEEEEEECCC
Confidence 9999999999999999999999999999999999996 68999985 599999954
No 12
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=9.4e-72 Score=585.37 Aligned_cols=357 Identities=37% Similarity=0.559 Sum_probs=339.6
Q ss_pred hccchhhhhhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHHHHHHhhh
Q psy17549 50 ILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSK 129 (418)
Q Consensus 50 ~~~~~~~~~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~akll~~~~~ 129 (418)
+++++.+.++|.+++..|++||..+++++++||||+||+|||+++ .|+++|||||+||+++|+++||+|+|++++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~---~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~ 79 (517)
T cd03343 3 ILKEGTQRTSGRDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDS---LGDVTITNDGATILKEMDIEHPAAKMLVEVAK 79 (517)
T ss_pred ccCCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcC---CCCEEEEccHHHHHHHccCcCHHHHHHHHHHH
Confidence 457788889999999999999999999999999999999999999 59999999999999999999999999999999
Q ss_pred hccccccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHhhccc
Q psy17549 130 VQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSS 209 (418)
Q Consensus 130 ~~~~~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~tsl~s 209 (418)
+|++++||||||+++|+++|++++.+++++|+||..|++||+.|++.++++|++++.+++.+ +++.|.++|+|+++|
T Consensus 80 ~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~---~~~~l~~va~ts~~s 156 (517)
T cd03343 80 TQDEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPD---DKDTLRKIAKTSLTG 156 (517)
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCC---CHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999988642 257899999999999
Q ss_pred cccchhhHHHHHHHHHHHHHhhc------cCCCcceEEEEccCCCcccceeeeeEEEeccCCC-CCcceecCceEEEeec
Q psy17549 210 KILSQHKEYFSKLAVDAVLRLKG------SGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQ-HQPKRIENAKLLIANT 282 (418)
Q Consensus 210 K~~~~~~~~ls~lvv~Av~~v~~------~~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~-~~~~~i~n~kIlll~~ 282 (418)
|+.+.+.+.|++++++|+.++++ .+|+++|+|+|++||++++|++++|++|++++.+ .||++++||||+++++
T Consensus 157 k~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m~~~~~n~~Illl~~ 236 (517)
T cd03343 157 KGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGMPKRVENAKIALLDA 236 (517)
T ss_pred cchhhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHcceeeeEEEeccCCCCCCccccCCCcEEEEec
Confidence 99999999999999999999853 3577899999999999999999999999999864 6899999999999999
Q ss_pred ccccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcCceEEecCCHHHHHH
Q psy17549 283 PMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIER 362 (418)
Q Consensus 283 ~Le~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~~~~L~r 362 (418)
+||+++++.+ +++.+++++++.++.++|++++++++++|++.|++||+++++|+|.+++||.++||++++++++++|+|
T Consensus 237 ~Le~~k~~~~-~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~ 315 (517)
T cd03343 237 PLEVKKTEID-AKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEK 315 (517)
T ss_pred cccCCccccc-eeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHH
Confidence 9999999985 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeeccccCCCCCCCceeeeeEEEEEECceeEEEEee------eeEEEeCCC
Q psy17549 363 LALVTGGEIVSTFDNPDQVKLGKCDLIEEVCLWTKNVTGPTV------STYSISGFR 413 (418)
Q Consensus 363 ia~~tGa~iv~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~------~t~~l~g~~ 413 (418)
||++|||++++++++++++++|+|+.|+++++|+++|++|++ ||++|||..
T Consensus 316 Ia~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t 372 (517)
T cd03343 316 LARATGAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNPKAVTILLRGGT 372 (517)
T ss_pred HHHHhCCEEecchhhCChhhCCccceEEEEEECCeEEEEEEcCCCCceEEEEEECCc
Confidence 999999999999999999999999999999999999999985 599999964
No 13
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.6e-71 Score=583.30 Aligned_cols=360 Identities=36% Similarity=0.516 Sum_probs=340.0
Q ss_pred hhccchhhhhhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHHHHHHhh
Q psy17549 49 RILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMS 128 (418)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~akll~~~~ 128 (418)
.+++++++.++|.+++..|++||..+++++++||||+||+|||++. .| ++|||||+||+++|+++||+|+|++++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~---~g-~~iTnDG~TIlk~i~~~hP~a~ll~~~a 80 (522)
T TIGR02345 5 VLLKEGTDTSQGKGQLISNINACVAIAEILKTTLGPRGMDKLIVGK---NG-ATVSNDGATILKLLDIVHPAAKTLVDIA 80 (522)
T ss_pred chhcCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECC---CC-cEEeCcHHHHHHHhcccChHHHHHHHHH
Confidence 4578888899999999999999999999999999999999999998 48 9999999999999999999999999999
Q ss_pred hhccccccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHhhcc
Q psy17549 129 KVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLS 208 (418)
Q Consensus 129 ~~~~~~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~tsl~ 208 (418)
++|++++||||||+++|+++||++|.+|+++|+||+.|++||+.|.+.++++|++++++++..+..+.+.|.++|+|+++
T Consensus 81 ~~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~ 160 (522)
T TIGR02345 81 KSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALN 160 (522)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999998864322235789999999999
Q ss_pred ccccchhhHHHHHHHHHHHHHhhc-cCCCcceEEEEccCCCcccceeeeeEEEeccCCC----CCcceecCceEEEeecc
Q psy17549 209 SKILSQHKEYFSKLAVDAVLRLKG-SGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQ----HQPKRIENAKLLIANTP 283 (418)
Q Consensus 209 sK~~~~~~~~ls~lvv~Av~~v~~-~~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~----~~~~~i~n~kIlll~~~ 283 (418)
||+.+.++++|++++++|+.++++ .+|+++|+|++++||+++||++++|++|++++.+ .||++++||||++++++
T Consensus 161 sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll~~~~ 240 (522)
T TIGR02345 161 SKLIAHEKEFFSKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNVE 240 (522)
T ss_pred cccccchHHHHHHHHHHHHHHHhhccCChhHheEEeecCCCHHhcceecceEEecccCccccccCCceeccceEEEEecC
Confidence 999999999999999999999975 5788999999999999999999999999999763 46899999999999999
Q ss_pred cccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcCceEEecCCHHHHHHH
Q psy17549 284 MDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERL 363 (418)
Q Consensus 284 Le~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~~~~L~ri 363 (418)
|++.+.+.. ..+.+++++++.++.+.|++.+++++++|.+.|+++|+|+++|+|.+++||.++||+++++++++|++|+
T Consensus 241 Le~~~~~~~-~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~~dl~ri 319 (522)
T TIGR02345 241 LELKAEKDN-AEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVSDEDLKRV 319 (522)
T ss_pred cccCccccc-eEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHH
Confidence 999988874 7889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeeccccCCCCCCCceeeeeEEEEEECceeEEEEeee------eEEEeCCC
Q psy17549 364 ALVTGGEIVSTFDNPDQVKLGKCDLIEEVCLWTKNVTGPTVS------TYSISGFR 413 (418)
Q Consensus 364 a~~tGa~iv~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~------t~~l~g~~ 413 (418)
|++|||++++++++++++++|+|+.|+++++|+++|++|++| |+++||..
T Consensus 320 a~~tga~ii~~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~~~~TI~lrG~t 375 (522)
T TIGR02345 320 VKACGGSIQSTTSDLEADVLGTCALFEERQIGSERYNYFTGCPHAKTCTIILRGGA 375 (522)
T ss_pred HHHhCCeEEcchhhCChhhccCCceEEEEEECCeEEEEEEcCCCCceEEEEEECCC
Confidence 999999999999999999999999999999999999999965 99999954
No 14
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.7e-70 Score=576.41 Aligned_cols=350 Identities=36% Similarity=0.547 Sum_probs=328.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHHHHHHhhhhcccccc
Q psy17549 57 EEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSKVQDDEVG 136 (418)
Q Consensus 57 ~~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~G 136 (418)
..+|.+++..|++||..+++++++||||+||+|||+++ .|+++|||||+||+++|+++||+|+|++++|++|++++|
T Consensus 3 ~~~~~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~---~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~G 79 (527)
T cd03335 3 RTSGQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDD---IGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVG 79 (527)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcC---CCCEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhC
Confidence 56788999999999999999999999999999999999 599999999999999999999999999999999999999
Q ss_pred CCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHh-hccccCCCchhhHHHHHHHHHhhccccccchh
Q psy17549 137 DGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALRE-ASIDNGLNSEKFREDLLNIARTTLSSKILSQH 215 (418)
Q Consensus 137 DGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~-~s~~~~~~~~~~~~~L~~ia~tsl~sK~~~~~ 215 (418)
|||||+++|+++||++|.+|+++|+||+.|++||+.|++.++++|++ ++++++.. +++.|.++++|+++||+.+++
T Consensus 80 DGTTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~---~~~~l~~ia~tsl~sK~~~~~ 156 (527)
T cd03335 80 DGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNL---GKESLINVAKTSMSSKIIGAD 156 (527)
T ss_pred CCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcc---CHHHHHHHHHHHhcccccchh
Confidence 99999999999999999999999999999999999999999999996 88887532 257899999999999999888
Q ss_pred hHHHHHHHHHHHHHhh---c----cCCCcceEEEEccCCCcccceeeeeEEEeccCCC-CCcceecCceEEEeecccccc
Q psy17549 216 KEYFSKLAVDAVLRLK---G----SGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQ-HQPKRIENAKLLIANTPMDTD 287 (418)
Q Consensus 216 ~~~ls~lvv~Av~~v~---~----~~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~-~~~~~i~n~kIlll~~~Le~~ 287 (418)
.+.|++++++|+..++ . .+++++|+|++++||++++|++++|++|++++.+ +||++++||||++++++|++.
T Consensus 157 ~~~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~m~~~i~n~kIlll~~~Le~~ 236 (527)
T cd03335 157 SDFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKT 236 (527)
T ss_pred HHHHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhcceeeeEEEecccCCCCCcccccCCcEEEEeccCCCC
Confidence 8999999999999984 1 2678899999999999999999999999999874 799999999999999999999
Q ss_pred cccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcCceEEecCCHHHHHHHHHHh
Q psy17549 288 KIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVT 367 (418)
Q Consensus 288 k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~~~~L~ria~~t 367 (418)
+++.+ +++.++++++++.+.+.|++++++++++|.+.|++||+++++|+|.+++||.++||++++|+++++|+|||++|
T Consensus 237 ~~~~~-~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~t 315 (527)
T cd03335 237 KMKLG-VQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKAT 315 (527)
T ss_pred ccccc-eeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHh
Confidence 98874 78999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeccccCCCC------CCCceeeeeEEEEEECceeEEEEee------eeEEEeCCC
Q psy17549 368 GGEIVSTFDNPD------QVKLGKCDLIEEVCLWTKNVTGPTV------STYSISGFR 413 (418)
Q Consensus 368 Ga~iv~~l~~l~------~~~lG~~~~v~~~~ig~~~~~~~~~------~t~~l~g~~ 413 (418)
||++++++++++ ++++|+|++|+++++|+++|++|++ ||++|||..
T Consensus 316 Ga~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~~~~~TIllrG~t 373 (527)
T cd03335 316 GATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKRSSASIILRGAN 373 (527)
T ss_pred CCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCc
Confidence 999999986653 4479999999999999999999974 699999964
No 15
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.4e-70 Score=573.76 Aligned_cols=349 Identities=36% Similarity=0.514 Sum_probs=331.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHHHHHHhhhhccccccC
Q psy17549 58 EKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSKVQDDEVGD 137 (418)
Q Consensus 58 ~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~GD 137 (418)
..+.+++.+|+.||..+++++++||||+||+|||+++ .|+++|||||+||+++|+++||+++|++++|++|++++||
T Consensus 5 ~~~~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~---~g~~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GD 81 (517)
T TIGR02342 5 DKPTDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSG---NGEVIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGD 81 (517)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcC---CCCEEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCC
Confidence 5667788999999999999999999999999999999 4999999999999999999999999999999999999999
Q ss_pred CceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHhhccccccchhhH
Q psy17549 138 GTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKE 217 (418)
Q Consensus 138 Gttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~tsl~sK~~~~~~~ 217 (418)
||||+++|+++||++|.+|+++|+||+.|++||+.|++.++++|+++++|++.+ +.+.|.++++|++++|+.+.+.+
T Consensus 82 GTtt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~---~~~~l~~va~tsl~sK~~~~~~~ 158 (517)
T TIGR02342 82 GTTSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLS---DREILIKSATTSLSSKVVSQYSS 158 (517)
T ss_pred CcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCcc---CHHHHHHHHHHHhccccchhHHH
Confidence 999999999999999999999999999999999999999999999999987542 25789999999999999999999
Q ss_pred HHHHHHHHHHHHhhc-----cCCCcceEEEEccCCCcccceeeeeEEEeccCCC--CCcceecCceEEEeeccccccccc
Q psy17549 218 YFSKLAVDAVLRLKG-----SGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQ--HQPKRIENAKLLIANTPMDTDKIK 290 (418)
Q Consensus 218 ~ls~lvv~Av~~v~~-----~~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~--~~~~~i~n~kIlll~~~Le~~k~e 290 (418)
.|++++++|+..+++ .+|+++|+|+++.||++++|++++|++|++++.+ +||++++||||++++++|++++++
T Consensus 159 ~ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~ 238 (517)
T TIGR02342 159 LLAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTD 238 (517)
T ss_pred HHHHHHHHHHHHHhccccCCccCHHHeeEEeccCCChhhcEEEeeEEEeccccccCCCCccccCCcEEEEecCCCCCccc
Confidence 999999999999964 4678899999999999999999999999999875 799999999999999999999988
Q ss_pred ccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEecccc-----ccchHHHHHHcCceEEecCCHHHHHHHHH
Q psy17549 291 VFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLI-----YNYPEQLFADAGVMAIEHADFDGIERLAL 365 (418)
Q Consensus 291 ~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I-----~d~a~~~l~~~gI~vv~~v~~~~L~ria~ 365 (418)
.. .++.+++++++..+.++|+++++.++++|.+.|++||+|+++| ++.+++||.++||++++++++++|+|||+
T Consensus 239 ~~-~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~ 317 (517)
T TIGR02342 239 ME-NQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICK 317 (517)
T ss_pred cc-ceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHHHHH
Confidence 75 7889999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HhCCeeccccCCCCCCCceeeeeEEEEEECceeEEEEee-------eeEEEeCCC
Q psy17549 366 VTGGEIVSTFDNPDQVKLGKCDLIEEVCLWTKNVTGPTV-------STYSISGFR 413 (418)
Q Consensus 366 ~tGa~iv~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~-------~t~~l~g~~ 413 (418)
+|||++++++++++++++|+|+.|+++++|+++|++|++ ||++|||..
T Consensus 318 ~tGa~ii~~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG~t 372 (517)
T TIGR02342 318 TIGCKPIASIDHFTADKLGSAELVEEVTTDGGKIIKITGIQNAGKTVTVLLRGSN 372 (517)
T ss_pred HHCCEEEcchhhcCcccCcCCceEEEEEECCeEEEEEEccCCCCceEEEEEeCCc
Confidence 999999999999999999999999999999999999964 599999954
No 16
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.3e-69 Score=568.70 Aligned_cols=351 Identities=38% Similarity=0.569 Sum_probs=328.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHHHHHHhhhhccccc
Q psy17549 56 EEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSKVQDDEV 135 (418)
Q Consensus 56 ~~~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~ 135 (418)
++++|.+++..|++||..+++++++||||+||+|||+++ .|+++|||||+||+++|+++||+|+|++++|++|++++
T Consensus 6 ~~~~~~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~---~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~qd~~~ 82 (536)
T TIGR02340 6 ERTSGQDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDD---IGDVTITNDGATILKLLEVEHPAAKILVELAQLQDREV 82 (536)
T ss_pred ceecHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcC---CCCEEEeccHHHHHHHhcccChHHHHHHHHHHHHHHHh
Confidence 467889999999999999999999999999999999998 59999999999999999999999999999999999999
Q ss_pred cCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhh-ccccCCCchhhHHHHHHHHHhhccccccch
Q psy17549 136 GDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREA-SIDNGLNSEKFREDLLNIARTTLSSKILSQ 214 (418)
Q Consensus 136 GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~-s~~~~~~~~~~~~~L~~ia~tsl~sK~~~~ 214 (418)
||||||+++|+++||++|.+|+++|+||+.|++||+.|++.++++|++. +++++.. +.+.|.++|+|+++||+.+.
T Consensus 83 GDGTTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~---~~~~l~~va~tsl~sK~~~~ 159 (536)
T TIGR02340 83 GDGTTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDEL---GREALINVAKTSMSSKIIGL 159 (536)
T ss_pred CCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcc---cHHHHHHHHHHHhccccchh
Confidence 9999999999999999999999999999999999999999999999874 8877532 25789999999999999999
Q ss_pred hhHHHHHHHHHHHHHhh---c----cCCCcceEEEEccCCCcccceeeeeEEEeccCC-CCCcceecCceEEEeeccccc
Q psy17549 215 HKEYFSKLAVDAVLRLK---G----SGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIG-QHQPKRIENAKLLIANTPMDT 286 (418)
Q Consensus 215 ~~~~ls~lvv~Av~~v~---~----~~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~-~~~~~~i~n~kIlll~~~Le~ 286 (418)
+++.|++++++|+..++ . .+++++|++++++||++++|++++|++|++++. .+||++++||||++++++|++
T Consensus 160 ~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~m~~~~~n~kIli~~~~L~~ 239 (536)
T TIGR02340 160 DSDFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARESYLVKGYALNCTRASQQMPKRIKKAKIACLDFNLQK 239 (536)
T ss_pred hHHHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCccccEEEEEEEEecccCCCCCcceecCCcEEEEecCCCC
Confidence 99999999999999985 1 257889999999999999999999999999986 479999999999999999999
Q ss_pred ccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcCceEEecCCHHHHHHHHHH
Q psy17549 287 DKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLALV 366 (418)
Q Consensus 287 ~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~~~~L~ria~~ 366 (418)
.+++.+ +++.++++.+++.+.+.|++.+.+.+++|++.|+++|+++++|+|.+++||.++||++++|+++++|+|||++
T Consensus 240 ~~~~~~-~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~ 318 (536)
T TIGR02340 240 QKMALG-VQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKA 318 (536)
T ss_pred CcccCc-eeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHHH
Confidence 998875 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeeccccCCC------CCCCceeeeeEEEEEECceeEEEEee------eeEEEeCCC
Q psy17549 367 TGGEIVSTFDNP------DQVKLGKCDLIEEVCLWTKNVTGPTV------STYSISGFR 413 (418)
Q Consensus 367 tGa~iv~~l~~l------~~~~lG~~~~v~~~~ig~~~~~~~~~------~t~~l~g~~ 413 (418)
|||++++++.++ +++++|+|+.|+++++|+++|++|++ ||+++||.+
T Consensus 319 tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TIlirG~t 377 (536)
T TIGR02340 319 TGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGRKSASIILRGAN 377 (536)
T ss_pred hCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCc
Confidence 999999998654 44559999999999999999999974 699999954
No 17
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.9e-69 Score=567.54 Aligned_cols=351 Identities=36% Similarity=0.514 Sum_probs=331.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHHHHHHhhhhccccc
Q psy17549 56 EEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSKVQDDEV 135 (418)
Q Consensus 56 ~~~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~ 135 (418)
++..+.+++..|++||..+++++++||||+||+|||+++ .|+++|||||+||+++|+++||+++|+++++++|++++
T Consensus 2 ~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~---~g~~~iTnDG~tIlk~l~~~hp~a~ll~~~a~~q~~~~ 78 (515)
T cd03338 2 DKEKPADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTG---KGEVIITNDGATILKQMSVLHPAAKMLVELSKAQDIEA 78 (515)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCC---CCCEEEECcHHHHHHhCcCcCHHHHHHHHHHHHHHhHh
Confidence 356677899999999999999999999999999999998 59999999999999999999999999999999999999
Q ss_pred cCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHhhccccccchh
Q psy17549 136 GDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQH 215 (418)
Q Consensus 136 GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~tsl~sK~~~~~ 215 (418)
||||||+++|+++|++++.+++++|+||..|++||+.|.+.++++|++++.+++.++ .+.|.++|+|+++||+.+.+
T Consensus 79 GDGTtt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~---~~~l~~va~ts~~sK~~~~~ 155 (515)
T cd03338 79 GDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLND---RESLIKSATTSLNSKVVSQY 155 (515)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCC---HHHHHHHHHHHhccccchhh
Confidence 999999999999999999999999999999999999999999999999999886322 47899999999999999999
Q ss_pred hHHHHHHHHHHHHHhhc-----cCCCcceEEEEccCCCcccceeeeeEEEeccCCCC--CcceecCceEEEeeccccccc
Q psy17549 216 KEYFSKLAVDAVLRLKG-----SGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQH--QPKRIENAKLLIANTPMDTDK 288 (418)
Q Consensus 216 ~~~ls~lvv~Av~~v~~-----~~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~~--~~~~i~n~kIlll~~~Le~~k 288 (418)
++.|++++++|+.++++ .+|+++|+++++.||++++|++++|++|++++.+. ||+.++|||+++++|+||+.+
T Consensus 156 ~~~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll~~~le~~~ 235 (515)
T cd03338 156 SSLLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPK 235 (515)
T ss_pred HHHHHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChhhceeeeeEEEeccccCcCCCCccccCCcEEEEeccccccc
Confidence 99999999999999964 36788999999999999999999999999998753 599999999999999999999
Q ss_pred ccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEecccc-----ccchHHHHHHcCceEEecCCHHHHHHH
Q psy17549 289 IKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLI-----YNYPEQLFADAGVMAIEHADFDGIERL 363 (418)
Q Consensus 289 ~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I-----~d~a~~~l~~~gI~vv~~v~~~~L~ri 363 (418)
++.. .++.++++++++.+.++|+++++.++++|++.|++||+++++| ++.+++||.++||++++++++++|+||
T Consensus 236 ~~~~-~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerI 314 (515)
T cd03338 236 TDMD-NNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFI 314 (515)
T ss_pred cccC-ceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHH
Confidence 8875 6788899999999999999999999999999999999999987 899999999999999999999999999
Q ss_pred HHHhCCeeccccCCCCCCCceeeeeEEEEEECceeEEEEee-------eeEEEeCCC
Q psy17549 364 ALVTGGEIVSTFDNPDQVKLGKCDLIEEVCLWTKNVTGPTV-------STYSISGFR 413 (418)
Q Consensus 364 a~~tGa~iv~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~-------~t~~l~g~~ 413 (418)
|++|||++++++++++++++|+|+.|+++++|+++|++|++ ||++|||..
T Consensus 315 a~~tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~t 371 (515)
T cd03338 315 CKTIGCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSN 371 (515)
T ss_pred HHHHCCEEecccccCCHhhCCCCceEEEEEECCeEEEEEEecCCCCceEEEEEeCCc
Confidence 99999999999999999999999999999999999999973 699999964
No 18
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.4e-69 Score=566.11 Aligned_cols=356 Identities=25% Similarity=0.402 Sum_probs=332.2
Q ss_pred hccchhhhhhh-HHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHHHHHHhh
Q psy17549 50 ILKHEAEEEKS-EIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMS 128 (418)
Q Consensus 50 ~~~~~~~~~~~-~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~akll~~~~ 128 (418)
+++++.+...+ ++++..|+.||..+++++++||||+||+|||++. .|+++|||||+||+++|+++||+|+|++++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~---~g~~~ITnDG~tIlk~i~~~hP~akll~e~a 81 (531)
T TIGR02346 5 LLKEGYRHMSGLEEAVIKNIEACKELSNITRTSLGPNGMNKMVINH---LDKLFVTNDAATILRELEVQHPAAKLLVMAS 81 (531)
T ss_pred cccCCcccccchHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcC---CCCEEEECcHHHHHHhccccCHHHHHHHHHH
Confidence 45666556666 4599999999999999999999999999999998 5999999999999999999999999999999
Q ss_pred hhccccccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhcc-ccCCCchhhHHHHHHHHHhhc
Q psy17549 129 KVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASI-DNGLNSEKFREDLLNIARTTL 207 (418)
Q Consensus 129 ~~~~~~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~-~~~~~~~~~~~~L~~ia~tsl 207 (418)
++|++++||||||+++|+++||+++.+++++|+||+.|++||+.|++.++++|+++++ ++... .+.+.|.++++|++
T Consensus 82 ~sqd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~--~~~~~l~~i~~tsl 159 (531)
T TIGR02346 82 EMQENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDV--RNKKELIKALKASI 159 (531)
T ss_pred HHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCC--CCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999886 65432 23578999999999
Q ss_pred cccccchhhHHHHHHHHHHHHHhhc----cCCCcceEEEEccCCCcccceeeeeEEEeccCCCCCcceecCceEEEeecc
Q psy17549 208 SSKILSQHKEYFSKLAVDAVLRLKG----SGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQPKRIENAKLLIANTP 283 (418)
Q Consensus 208 ~sK~~~~~~~~ls~lvv~Av~~v~~----~~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~~~~~~i~n~kIlll~~~ 283 (418)
+||+.++ +++|++++++|+.++++ .+++++|+|+++.|+++++|++++|++|++++ .+||++++||||+++++|
T Consensus 160 ~sK~~~~-~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds~li~Gi~~~~~~-~~~~k~i~n~kI~l~~~~ 237 (531)
T TIGR02346 160 SSKQYGN-EDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNSEVLKGMVFNREA-EGSVKRVKNAKVAVFSCP 237 (531)
T ss_pred ccccCch-HHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhceeEeeeEEeccC-CCCceeccCCCEEEEecC
Confidence 9999877 99999999999999874 46788999999999999999999999999995 467999999999999999
Q ss_pred cccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcCceEEecCCHHHHHHH
Q psy17549 284 MDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERL 363 (418)
Q Consensus 284 Le~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~~~~L~ri 363 (418)
+++++++.+ +++.+++++++..+.+.|+++++++++.+++.|++||+++++|+|.+++||.++||+++++++..+|+||
T Consensus 238 l~~~~~~~~-~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~I 316 (531)
T TIGR02346 238 LDTATTETK-GTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELRRL 316 (531)
T ss_pred cCCCcccCc-eEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHHHH
Confidence 999998864 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeeccccCCCCCCCceeeeeEEEEEECceeEEEEee-------eeEEEeCCC
Q psy17549 364 ALVTGGEIVSTFDNPDQVKLGKCDLIEEVCLWTKNVTGPTV-------STYSISGFR 413 (418)
Q Consensus 364 a~~tGa~iv~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~-------~t~~l~g~~ 413 (418)
|.+|||++++++++++++++|+|+.|++.++|+++|.+|++ ||+++||..
T Consensus 317 a~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~t 373 (531)
T TIGR02346 317 CKTVGATPLARLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENGDSKISTIILRGST 373 (531)
T ss_pred HHHHCCEEecccccCCHhHccccceEEEEEECCEEEEEEEccCCCCCeEEEEEECCC
Confidence 99999999999999999999999999999999999999974 599999954
No 19
>KOG0358|consensus
Probab=100.00 E-value=5.6e-69 Score=513.87 Aligned_cols=351 Identities=35% Similarity=0.502 Sum_probs=331.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHHHHHHhhhhcccccc
Q psy17549 57 EEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSKVQDDEVG 136 (418)
Q Consensus 57 ~~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~G 136 (418)
.+..++.|.+|++|+++++|+++|||||+||||||+... |+++|||||+|||+.|++-||+|+|+++.+.+||.++|
T Consensus 21 ~ekp~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~---gev~iTNDGaTILk~m~vlhP~akmLvelS~aQD~eaG 97 (534)
T KOG0358|consen 21 KEKPEQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGK---GEVIITNDGATILKQMNVLHPAAKMLVELSAAQDSEAG 97 (534)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCC---CcEEEecChHHHHHHHhhhChHHHHHHHhhhhcccccc
Confidence 356788999999999999999999999999999999994 99999999999999999999999999999999999999
Q ss_pred CCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHhhccccccchhh
Q psy17549 137 DGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHK 216 (418)
Q Consensus 137 DGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~tsl~sK~~~~~~ 216 (418)
|||||+|+|||+||+.+.+|+++|+||+.|.+.|+.|.+.++++|++++.|++..+ ++.|.+-+.|+|+||+.+++.
T Consensus 98 DGTTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsd---re~Li~~atTsLnSKvvSq~s 174 (534)
T KOG0358|consen 98 DGTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSD---RESLIKSATTSLNSKVVSQYS 174 (534)
T ss_pred CCceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCc---HHHHHHHHHhHhhHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999987643 688999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc-----cCCCcceEEEEccCCCcccceeeeeEEEeccCC-CCCcceecCceEEEeeccccccccc
Q psy17549 217 EYFSKLAVDAVLRLKG-----SGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIG-QHQPKRIENAKLLIANTPMDTDKIK 290 (418)
Q Consensus 217 ~~ls~lvv~Av~~v~~-----~~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~-~~~~~~i~n~kIlll~~~Le~~k~e 290 (418)
..+++++++|+.++-. +.|+.+|+|+|..||.++|+++++|++|++... ...|++++++||.++.|.+.++|++
T Consensus 175 ~llapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDte~i~glvl~~~~~~~~gptriekAkIglIQF~iS~PKtd 254 (534)
T KOG0358|consen 175 SLLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDTELIKGLVLTQKASKSAGPTRIEKAKIGLIQFQISPPKTD 254 (534)
T ss_pred cccchHHHHHHHhccCcccccccchhhhhhHHhhCCccchhhhhcceEEeeecccCCCcchhhhceeeEEEEEecCCCCC
Confidence 9999999999998842 578899999999999999999999999998875 3589999999999999999999998
Q ss_pred ccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccc-----cccchHHHHHHcCceEEecCCHHHHHHHHH
Q psy17549 291 VFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQL-----IYNYPEQLFADAGVMAIEHADFDGIERLAL 365 (418)
Q Consensus 291 ~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~-----I~d~a~~~l~~~gI~vv~~v~~~~L~ria~ 365 (418)
.. .++.++++.+++.+.+.|++|+.+++++|++.|+||++.|+. ++|+++|||++.+|||++.+.++|++.+|+
T Consensus 255 me-n~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRediefick 333 (534)
T KOG0358|consen 255 ME-NQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFICK 333 (534)
T ss_pred cc-cceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHHh
Confidence 75 789999999999999999999999999999999999999985 488999999999999999999999999999
Q ss_pred HhCCeeccccCCCCCCCceeeeeEEEEEE-CceeEEEEee-------eeEEEeCCCc
Q psy17549 366 VTGGEIVSTFDNPDQVKLGKCDLIEEVCL-WTKNVTGPTV-------STYSISGFRY 414 (418)
Q Consensus 366 ~tGa~iv~~l~~l~~~~lG~~~~v~~~~i-g~~~~~~~~~-------~t~~l~g~~~ 414 (418)
..|+.|+.+++.++++.||+++.++|..- |+.|++.++| |++++||.+.
T Consensus 334 ~l~c~Pia~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~g~tvsil~RGsn~ 390 (534)
T KOG0358|consen 334 TLGCKPIADIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNAGRTVSILLRGSNK 390 (534)
T ss_pred hcCCeecchhhhcChhhcCcchhhhhcccCCCccEEEEEEeecCCCceEEEEecCch
Confidence 99999999999999999999999999955 6669999984 6999999764
No 20
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.9e-67 Score=545.23 Aligned_cols=327 Identities=31% Similarity=0.438 Sum_probs=305.6
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHHHHHHhhhhc
Q psy17549 52 KHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSKVQ 131 (418)
Q Consensus 52 ~~~~~~~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~akll~~~~~~~ 131 (418)
+++.+..++.+++..|+.||..++++++|||||+||+|||+++ .|+++|||||+||+++|+++||+++|++++|++|
T Consensus 2 ~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~---~g~~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~q 78 (484)
T cd03342 2 NPKAEVLRRGQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSG---AGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQ 78 (484)
T ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECC---CCCEEEeccHHHHHHhccCcCHHHHHHHHHHHHh
Confidence 3456788999999999999999999999999999999999999 5999999999999999999999999999999999
Q ss_pred cccccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHhhccccc
Q psy17549 132 DDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKI 211 (418)
Q Consensus 132 ~~~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~tsl~sK~ 211 (418)
++++||||||+++|+++|+++|.++++.|+||..|++||++|.+.++++|++++.+++.+ .+.+.+.++|+|+++||+
T Consensus 79 d~~~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~--~~~~~l~~va~ts~~sk~ 156 (484)
T cd03342 79 DDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEID--TDRELLLSVARTSLRTKL 156 (484)
T ss_pred hhHhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCC--CCHHHHHHHHHHHhCccc
Confidence 999999999999999999999999999999999999999999999999999999888631 125789999999999999
Q ss_pred cchhhHHHHHHHHHHHHHhhc---cCCCcceEEEEccCCCcccceeeeeEEEeccCCC-CCcceecCceEEEeecccccc
Q psy17549 212 LSQHKEYFSKLAVDAVLRLKG---SGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQ-HQPKRIENAKLLIANTPMDTD 287 (418)
Q Consensus 212 ~~~~~~~ls~lvv~Av~~v~~---~~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~-~~~~~i~n~kIlll~~~Le~~ 287 (418)
.+.+.+.|++++++|+..+++ .+|+++|++++++||++++|++++|++|++++.+ .||++++||||++++++|+++
T Consensus 157 ~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m~~~~~n~~Ill~~~~le~~ 236 (484)
T cd03342 157 HADLADQLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYE 236 (484)
T ss_pred chhHHHHHHHHHHHHHHHHhhcCCccChhHeEEEEecCCChhhceEEeeEEEecCCCCCCCCccccCceEEEEeCCCCCC
Confidence 999999999999999999975 4678899999999999999999999999999864 789999999999999999999
Q ss_pred cccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcCceEEecCCHHHHHHHHHHh
Q psy17549 288 KIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVT 367 (418)
Q Consensus 288 k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~~~~L~ria~~t 367 (418)
+++.+ .++.++ ||+|+++|+|.+++||.++||++++++++++|+|||++|
T Consensus 237 ~~~~~-~~~~~~-----------------------------lvi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~t 286 (484)
T cd03342 237 KTEVN-SGFFYS-----------------------------VVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLAC 286 (484)
T ss_pred ccccC-cEEEEE-----------------------------EEEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHh
Confidence 88764 444432 999999999999999999999999999999999999999
Q ss_pred CCeeccccCCCCCCCceeeeeEEEEEECceeEEEEee------eeEEEeCCC
Q psy17549 368 GGEIVSTFDNPDQVKLGKCDLIEEVCLWTKNVTGPTV------STYSISGFR 413 (418)
Q Consensus 368 Ga~iv~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~------~t~~l~g~~ 413 (418)
||++++++++++++++|+|++|+++.+|+++|++|++ ||++|||..
T Consensus 287 Ga~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~tI~lrg~t 338 (484)
T cd03342 287 GGVAMNSVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNPKSCTILIKGPN 338 (484)
T ss_pred CCEEecccccCChhhCcccceEEEEEECCeEEEEEECCCCCcEEEEEEeCCC
Confidence 9999999999999999999999999999999999985 599999954
No 21
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.2e-66 Score=538.14 Aligned_cols=316 Identities=30% Similarity=0.494 Sum_probs=296.6
Q ss_pred hccchhhhhhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHHHHHHhhh
Q psy17549 50 ILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSK 129 (418)
Q Consensus 50 ~~~~~~~~~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~akll~~~~~ 129 (418)
+++++++.+++.+++..|+.||..++++++|||||+||+|||+++ .|+++|||||+||+++|+++||+|+|++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~---~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~ 80 (480)
T cd03337 4 VLNQNTKRESGRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDP---MGGIVLTNDGNAILREIDVAHPAAKSMIELSR 80 (480)
T ss_pred eccCCCccccHHHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcC---CCCEEEeccHHHHHHhccccChHHHHHHHHHH
Confidence 467777889999999999999999999999999999999999998 49999999999999999999999999999999
Q ss_pred hccccccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHhhccc
Q psy17549 130 VQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSS 209 (418)
Q Consensus 130 ~~~~~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~tsl~s 209 (418)
+|++++||||||+++|+++||++|.+|+++|+||+.|++||+.|++.++++|++++++++.. +.+.|.++++|+++|
T Consensus 81 ~q~~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~---~~~~l~~i~~t~l~s 157 (480)
T cd03337 81 TQDEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVN---DRAQMLKIIKSCIGT 157 (480)
T ss_pred hHHHHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccC---CHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999887642 257899999999999
Q ss_pred cccchhhHHHHHHHHHHHHHhhcc-------CCCc-ceEEEEccCCCcccceeeeeEEEeccCCC-CCcceecCceEEEe
Q psy17549 210 KILSQHKEYFSKLAVDAVLRLKGS-------GNLS-AIQIIKKKGGCLEDSFLDEGFLLDKKIGQ-HQPKRIENAKLLIA 280 (418)
Q Consensus 210 K~~~~~~~~ls~lvv~Av~~v~~~-------~~~~-~I~I~ki~Ggs~~dS~lv~Givl~~~~~~-~~~~~i~n~kIlll 280 (418)
|+.+.|.+.|++++++|+..++++ +|++ +|+|++++||+++||++++|++|++++.+ .||++++||||+++
T Consensus 158 K~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~m~~~~~n~kIlll 237 (480)
T cd03337 158 KFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPKMRRRIENPRIVLL 237 (480)
T ss_pred CcchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCCCCcEecCCCEEEE
Confidence 999999999999999999998642 3443 59999999999999999999999999875 79999999999999
Q ss_pred ecccccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcCceEEecCCHHHH
Q psy17549 281 NTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGI 360 (418)
Q Consensus 281 ~~~Le~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~~~~L 360 (418)
+++||+ ||+++++|+|.+++||.++||++++++++++|
T Consensus 238 ~~~Le~------------------------------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L 275 (480)
T cd03337 238 DCPLEY------------------------------------------LVITEKGVSDLAQHYLVKAGITALRRVRKTDN 275 (480)
T ss_pred ecCcce------------------------------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHHHH
Confidence 999875 99999999999999999999999999999999
Q ss_pred HHHHHHhCCeeccccCCCCCCCcee-eeeEEEEEECceeEEEEee------eeEEEeCCC
Q psy17549 361 ERLALVTGGEIVSTFDNPDQVKLGK-CDLIEEVCLWTKNVTGPTV------STYSISGFR 413 (418)
Q Consensus 361 ~ria~~tGa~iv~~l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~------~t~~l~g~~ 413 (418)
+|||++|||++++++++++++++|+ |+.++++++|+++|++|++ ||++|||..
T Consensus 276 ~rIa~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~~~~TIllrG~t 335 (480)
T cd03337 276 NRIARACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITECKDPKACTILLRGAS 335 (480)
T ss_pred HHHHHHHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCCCEEEEEEECCC
Confidence 9999999999999999999999999 7888999999999999985 599999954
No 22
>KOG0362|consensus
Probab=100.00 E-value=3.4e-64 Score=495.57 Aligned_cols=356 Identities=26% Similarity=0.381 Sum_probs=330.8
Q ss_pred hhccchhhhhhh-HHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHHHHHHh
Q psy17549 49 RILKHEAEEEKS-EIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDM 127 (418)
Q Consensus 49 ~~~~~~~~~~~~-~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~akll~~~ 127 (418)
+++++|+++.+| +++..+|++||+.+++++||+|||+||+||++|+ .|+..+|||.+||+++|+++||+||||+++
T Consensus 12 q~~k~g~r~~~~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh---~~k~~~TndaatIlrelev~HPaakllv~a 88 (537)
T KOG0362|consen 12 QMLKEGARSPSGEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNH---LGKTFVTNDAATILRELEVEHPAAKLLVEA 88 (537)
T ss_pred hHHhccccCcccchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecc---cceEEEcCChHHHHHHhhccCcHHHHHHHH
Confidence 478999998776 6789999999999999999999999999999999 599999999999999999999999999999
Q ss_pred hhhccccccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHhhc
Q psy17549 128 SKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTL 207 (418)
Q Consensus 128 ~~~~~~~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~tsl 207 (418)
++.|+++.||||+++++|+++||++|++|++.|++|.+|++||+.|...+++.|+++.+....+. ++....++|++
T Consensus 89 ~~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~----~d~~~~~rs~i 164 (537)
T KOG0362|consen 89 TQMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDL----EDKEWALRSVI 164 (537)
T ss_pred HHHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccc----cChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999876543321 11227888888
Q ss_pred cccccchhhHHHHHHHHHHHHHhhcc--CCCcceEEEEccCCCcccceeeeeEEEeccCCCCCcceecCceEEEeecccc
Q psy17549 208 SSKILSQHKEYFSKLAVDAVLRLKGS--GNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQPKRIENAKLLIANTPMD 285 (418)
Q Consensus 208 ~sK~~~~~~~~ls~lvv~Av~~v~~~--~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~~~~~~i~n~kIlll~~~Le 285 (418)
+||...+ .+++++++++|...+.+. |+.|+|+++|+.||++++|+++.|+||++.+ .+.++..+++||++++||++
T Consensus 165 ~skq~~~-ed~l~~lVa~ac~si~p~~~FnvdnIrVcKi~Gg~l~~S~Vv~GmVfkr~~-eG~v~~ak~arvAvf~cP~d 242 (537)
T KOG0362|consen 165 MSKQYGN-EDFLTKLVAKACVSILPLMSFNVDNIRVCKILGGGLEDSCVVCGMVFKRDP-EGEVKSAKDARVAVFACPFD 242 (537)
T ss_pred HHhhcch-HHHHHHHHHHHHHhhcccccccccceEEEEEecCCcccceeeEEEEecccc-CCcccccccceeEEEecCCC
Confidence 8886544 689999999999998776 8999999999999999999999999999987 55668888999999999999
Q ss_pred cccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcCceEEecCCHHHHHHHHH
Q psy17549 286 TDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLAL 365 (418)
Q Consensus 286 ~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~~~~L~ria~ 365 (418)
...+|++ +++.+++++++..|.+.|+..++..++.|.+.|++||++.+.|++++++|+++++|++++--++.||+|+|+
T Consensus 243 ~~~TEtk-gTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlqi~Sk~eLrrlcr 321 (537)
T KOG0362|consen 243 IAQTETK-GTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQINSKFDLRRLCR 321 (537)
T ss_pred cccccCc-ceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEEeccHhhHHHHHH
Confidence 9999997 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeeccccCCCCCCCceeeeeEEEEEECceeEEEEe-ee------eEEEeCCCc
Q psy17549 366 VTGGEIVSTFDNPDQVKLGKCDLIEEVCLWTKNVTGPT-VS------TYSISGFRY 414 (418)
Q Consensus 366 ~tGa~iv~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~-~~------t~~l~g~~~ 414 (418)
..||++++++..+.++.+|+|++|+...+|++.++.|. +| |+.|||..+
T Consensus 322 tvGA~~l~rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVLRgst~ 377 (537)
T KOG0362|consen 322 TVGATALPRLFPPAPEELGYCDSVSTQEIGDTLVVVFRWESTGTRVATVVLRGATQ 377 (537)
T ss_pred HcCCccchhccCCCCccccccceeeeeecCCceEEEEeeccCCCceeEEEEcccch
Confidence 99999999999999999999999999999999999997 44 999999654
No 23
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.7e-63 Score=512.75 Aligned_cols=310 Identities=27% Similarity=0.429 Sum_probs=288.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHHHHHHhhhhccccccC
Q psy17549 58 EKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSKVQDDEVGD 137 (418)
Q Consensus 58 ~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~GD 137 (418)
..+++++..|++||..+++++++||||+||+|||++. .|++++||||+||+++|+++||+++|+++++++|++++||
T Consensus 4 ~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~---~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GD 80 (472)
T cd03341 4 SGLEEAVLRNIEACKELSQITRTSYGPNGMNKMVINH---LEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGD 80 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcC---CCCEEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCC
Confidence 4578899999999999999999999999999999998 5999999999999999999999999999999999999999
Q ss_pred CceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccc-cCCCchhhHHHHHHHHHhhccccccchhh
Q psy17549 138 GTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASID-NGLNSEKFREDLLNIARTTLSSKILSQHK 216 (418)
Q Consensus 138 Gttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~-~~~~~~~~~~~L~~ia~tsl~sK~~~~~~ 216 (418)
||||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|++++++ +... .+.+.+.++++|+++||..+ ++
T Consensus 81 GTTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~--~~~~~l~~i~~t~l~sk~~~-~~ 157 (472)
T cd03341 81 GTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDL--RNKEEVSKALKTAIASKQYG-NE 157 (472)
T ss_pred ChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCc--cCHHHHHHHHHHHhcccccc-hH
Confidence 99999999999999999999999999999999999999999999999876 3321 22577999999999999876 68
Q ss_pred HHHHHHHHHHHHHhhc----cCCCcceEEEEccCCCcccceeeeeEEEeccCCCCCcceecCceEEEeeccccccccccc
Q psy17549 217 EYFSKLAVDAVLRLKG----SGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQPKRIENAKLLIANTPMDTDKIKVF 292 (418)
Q Consensus 217 ~~ls~lvv~Av~~v~~----~~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~~~~~~i~n~kIlll~~~Le~~k~e~~ 292 (418)
++|++++++|+.++++ .+++++|+|++++||+++||++++|++|++.+ ..++++++||||++++++|++
T Consensus 158 ~~l~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds~lv~Giv~~~~~-~~~~~~~~n~~Ili~~~~Le~------ 230 (472)
T cd03341 158 DFLSPLVAEACISVLPENIGNFNVDNIRVVKILGGSLEDSKVVRGMVFKREP-EGSVKRVKKAKVAVFSCPFDI------ 230 (472)
T ss_pred HHHHHHHHHHHHHHhhccCCcCChhHeEEEEecCCCcccceEEeeEEEcccc-CCCceeccCCcEEEEeccccC------
Confidence 9999999999999864 46778999999999999999999999998876 356689999999999998875
Q ss_pred CeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcCceEEecCCHHHHHHHHHHhCCeec
Q psy17549 293 GSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEIV 372 (418)
Q Consensus 293 ~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~~~~L~ria~~tGa~iv 372 (418)
|+++|+++++|+|.+++||+++||++++++++++|+|||++|||+++
T Consensus 231 ---------------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii 277 (472)
T cd03341 231 ---------------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPL 277 (472)
T ss_pred ---------------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEe
Confidence 89999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCceeeeeEEEEEECceeEEEEee-------eeEEEeCCC
Q psy17549 373 STFDNPDQVKLGKCDLIEEVCLWTKNVTGPTV-------STYSISGFR 413 (418)
Q Consensus 373 ~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~-------~t~~l~g~~ 413 (418)
+++++++++++|+|+.|++.++|+++|++|++ ||++|||..
T Consensus 278 ~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TI~lrG~t 325 (472)
T cd03341 278 PRLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGAT 325 (472)
T ss_pred cccccCCHhHCCCceEEEEEEECCeeEEEEEccCCCCCeEEEEEECCC
Confidence 99999999999999999999999999999974 599999954
No 24
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-63 Score=515.15 Aligned_cols=349 Identities=34% Similarity=0.489 Sum_probs=328.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHHHHHHhhhhcccc
Q psy17549 55 AEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSKVQDDE 134 (418)
Q Consensus 55 ~~~~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~ 134 (418)
....++.+|+..|+.|+..+++++++||||+||+||++++ .|+++|||||+||+++|+++||+|+|++++|++||++
T Consensus 4 ~~~~~~~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~---~g~~~iTnDG~tIlkeielehp~akll~eva~~qd~e 80 (524)
T COG0459 4 KERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDS---GGDITITNDGVTILKEIELEHPGAKLLVEVAKKQDDE 80 (524)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhccCCCcCceEEecC---CCCEEEecCcceehhhhhccCchhHHHHHHHHHHHHH
Confidence 3457889999999999999999999999999999999998 4899999999999999999999999999999999999
Q ss_pred ccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHhhccccccch
Q psy17549 135 VGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQ 214 (418)
Q Consensus 135 ~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~tsl~sK~~~~ 214 (418)
+||||||++||+++||++|.+++.+|+||+.|++||++|.+.++++|++.++++..+. ... +++.|+++||..++
T Consensus 81 ~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~----~~~-~~~~t~v~sk~~~~ 155 (524)
T COG0459 81 AGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSE----EEL-KIAITSVASKSANS 155 (524)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcch----hhh-hhhhheeeeeeccC
Confidence 9999999999999999999999999999999999999999999999999999987652 122 78999999998877
Q ss_pred hhHHHHHHHHHHHHHhhc-cCCCcceEEEEccCCCcccceeeeeEEEeccC-C-CCCc-ceecCceEEEeeccccccccc
Q psy17549 215 HKEYFSKLAVDAVLRLKG-SGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKI-G-QHQP-KRIENAKLLIANTPMDTDKIK 290 (418)
Q Consensus 215 ~~~~ls~lvv~Av~~v~~-~~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~-~-~~~~-~~i~n~kIlll~~~Le~~k~e 290 (418)
+ +.|++++++|+.+++. +.|++.|.+++..||+.+++++++|++|++++ + +.|| +.++||+|++++++|++.+++
T Consensus 156 ~-~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d~~l~~~k~~ 234 (524)
T COG0459 156 D-EEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKKPE 234 (524)
T ss_pred h-HHHHHHHHHHHHHhcccccccCCeEEEEecCCCccceEEEeeEEecCCccCCCCCCccccccceEEEEcccccccccc
Confidence 6 9999999999999975 23778999999999999999999999999954 4 4788 899999999999999999999
Q ss_pred ccCeeEEEcCHHHHHHHHHHHH-HHHHHHHHHHHccCce-EEEeccccccchHHHHHHcCceEEecCCHHHH-HHHHHHh
Q psy17549 291 VFGSRVRVDSMAKIAELELAEK-EKMKDKVEKILKHNAN-VFINRQLIYNYPEQLFADAGVMAIEHADFDGI-ERLALVT 367 (418)
Q Consensus 291 ~~~~~v~i~s~~~l~~~~~~E~-~~l~~~v~~I~~~gv~-vVl~~~~I~d~a~~~l~~~gI~vv~~v~~~~L-~ria~~t 367 (418)
.+ .++.++++.++..+.+.|+ +.+..+++++.+.|+| +++++++|+|.+++||.+.+|++++++.++|+ ++++++|
T Consensus 235 l~-~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~~ 313 (524)
T COG0459 235 LP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLG 313 (524)
T ss_pred Cc-ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHcc
Confidence 86 8999999999999999999 9999999999999999 99999999999999999999999999999999 8999999
Q ss_pred CCeeccccCCCCCCCcee--eeeEEEEEECceeEEEEee--------eeEEEeCCC
Q psy17549 368 GGEIVSTFDNPDQVKLGK--CDLIEEVCLWTKNVTGPTV--------STYSISGFR 413 (418)
Q Consensus 368 Ga~iv~~l~~l~~~~lG~--~~~v~~~~ig~~~~~~~~~--------~t~~l~g~~ 413 (418)
||++++.++++++..+|. |+.|++..+|++++++|.+ |||++||..
T Consensus 314 ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI~vrgat 369 (524)
T COG0459 314 GAKIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGAT 369 (524)
T ss_pred CceEEeecccCceeecCccccceEEEeeccchhhhhhhhhhhcCCCeEEEEECCcc
Confidence 999999999999999999 9999999999999999973 799999964
No 25
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.1e-62 Score=510.53 Aligned_cols=309 Identities=43% Similarity=0.612 Sum_probs=293.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHHHHHHhhhhcccccc
Q psy17549 57 EEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSKVQDDEVG 136 (418)
Q Consensus 57 ~~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~G 136 (418)
...+++++..|++||..+++++++||||+||+|||+++ .|++++||||+||+++|+++||+++|+++++++|++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~---~g~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~G 79 (464)
T cd00309 3 REFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDS---LGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVG 79 (464)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcC---CCCeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhC
Confidence 45788999999999999999999999999999999999 599999999999999999999999999999999999999
Q ss_pred CCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHhhccccccchhh
Q psy17549 137 DGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHK 216 (418)
Q Consensus 137 DGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~tsl~sK~~~~~~ 216 (418)
|||||+++|+++|++++.+++++|+||+.|++||+.|++.++++|++++++++.. +.+.|.++++|+++||+.+.|+
T Consensus 80 DGTtt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~---~~~~l~~ia~tsl~sK~~~~~~ 156 (464)
T cd00309 80 DGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVE---DREELLKVATTSLNSKLVSGGD 156 (464)
T ss_pred CchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCC---CHHHHHHHhHhcccccccccch
Confidence 9999999999999999999999999999999999999999999999999986432 2588999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc---cCCCcceEEEEccCCCcccceeeeeEEEeccCCC-CCcceecCceEEEeeccccccccccc
Q psy17549 217 EYFSKLAVDAVLRLKG---SGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQ-HQPKRIENAKLLIANTPMDTDKIKVF 292 (418)
Q Consensus 217 ~~ls~lvv~Av~~v~~---~~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~-~~~~~i~n~kIlll~~~Le~~k~e~~ 292 (418)
+++++++++|+.++++ .++.++|+|++++||++++|++++|++|++++.+ .|+++++||||++++++|++
T Consensus 157 ~~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m~~~~~n~~Ili~~~~Le~------ 230 (464)
T cd00309 157 DFLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEY------ 230 (464)
T ss_pred HHHHHHHHHHHHHhccccCccccceEEEEecCCCCcccceeeeeEEEecCCCCCCCceeecCceEEEEecCcce------
Confidence 9999999999999976 4667899999999999999999999999999875 68899999999999999875
Q ss_pred CeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcCceEEecCCHHHHHHHHHHhCCeec
Q psy17549 293 GSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEIV 372 (418)
Q Consensus 293 ~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~~~~L~ria~~tGa~iv 372 (418)
+|+++++|+|.+++||.++||++++++++++|+|||++|||+++
T Consensus 231 ------------------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii 274 (464)
T cd00309 231 ------------------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIV 274 (464)
T ss_pred ------------------------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEe
Confidence 99999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCceeeeeEEEEEECceeEEEEee------eeEEEeCCC
Q psy17549 373 STFDNPDQVKLGKCDLIEEVCLWTKNVTGPTV------STYSISGFR 413 (418)
Q Consensus 373 ~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~------~t~~l~g~~ 413 (418)
+++++++++++|+|+.|++.++|+++|++|++ ||++|||..
T Consensus 275 ~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrG~t 321 (464)
T cd00309 275 SRLEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGGKVATILLRGAT 321 (464)
T ss_pred cccccCCcccCccccEEEEEEEcCeeEEEEEecCCCCEEEEEEeCCc
Confidence 99999999999999999999999999999974 699999953
No 26
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=8.7e-62 Score=506.19 Aligned_cols=331 Identities=42% Similarity=0.603 Sum_probs=313.4
Q ss_pred HHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHHHHHHhhhhccccccCCceehHhHHHHHHHHH
Q psy17549 74 IGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNA 153 (418)
Q Consensus 74 la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viLa~~Ll~~a 153 (418)
||+++++||||+|++|||++. .|++++||||+||+++|+++||+++|+++++++|++++||||||+++|+++|++++
T Consensus 1 l~~~v~sslGP~G~~kli~~~---~g~~~iTndg~tIl~~l~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~ 77 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVND---SGKIIITNDGATILKSLKINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNA 77 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEES---SSSEEEESSHHHHHHHSTBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcC---CCCeEEEechhHHHHHhhhccchhhhHHHhHHHHHhhhccccceeeecccchhhhh
Confidence 689999999999999999997 59999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHhhcc
Q psy17549 154 EKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRLKGS 233 (418)
Q Consensus 154 ~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~tsl~sK~~~~~~~~ls~lvv~Av~~v~~~ 233 (418)
.+++++|+||..|++||+.|++.+++.|++++++++.+. +.++++++|++++|+...|.++|++++++|+..+..+
T Consensus 78 ~~li~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~----~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~ 153 (485)
T PF00118_consen 78 LKLIKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDD----ESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSN 153 (485)
T ss_dssp HHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTS----HHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTT
T ss_pred hhhhhccccccchhhhhhhhhhhhhhhhhhhhccccccc----hhhhhhhcccccccccccchhhhhhhHHHHHHhhccc
Confidence 999999999999999999999999999999999987652 7899999999999999999999999999999555545
Q ss_pred CCCcceEEEEccCCCcccceeeeeEEEeccCCC-CCcceecCceEEEeecccccccccccCeeEEEcCHHHHHHHHHHHH
Q psy17549 234 GNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQ-HQPKRIENAKLLIANTPMDTDKIKVFGSRVRVDSMAKIAELELAEK 312 (418)
Q Consensus 234 ~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~-~~~~~i~n~kIlll~~~Le~~k~e~~~~~v~i~s~~~l~~~~~~E~ 312 (418)
++++++.++++.||+++||++++|+++++++.+ +||++++||||++++++|++.++ . .+++.+++++++..+.++|+
T Consensus 154 ~~~~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~~~~~~~~~Ill~~~~L~~~~~-~-~~~~~~~~~~~~~~~~~~e~ 231 (485)
T PF00118_consen 154 FDLDNIKIIKIPGGSISDSELINGIVLDKGFSSPNMPKKIENPKILLLNCPLEYSKS-F-KSEIRITSPEQLDELSKQEK 231 (485)
T ss_dssp HHGGGEEEEEEESSSSGGEEEESEEEESSSBSSTTSBSEEESEEEEEESSEBSSCCH-S-TEEEEESSTHHHHHHHHHHH
T ss_pred ccccchhhhhhccccccccccccceeeeccccccccccccccceEEeeecccccccc-c-ccccchhhHHHHHHHHhhhh
Confidence 788889999999999999999999999999875 58999999999999999999988 5 48999999999999999999
Q ss_pred HHHHHHHHHHHccCceEEEeccccccchHHHHHHcCceEEecCCHHHHHHHHHHhCCeeccccCCCCCCCceeeeeEEEE
Q psy17549 313 EKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEV 392 (418)
Q Consensus 313 ~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~~~~L~ria~~tGa~iv~~l~~l~~~~lG~~~~v~~~ 392 (418)
+++++++++|.+.|+++|+++++|++.++++|.++||++++++++++|++||++|||++++++++++++++|+|+.++++
T Consensus 232 ~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~~~~v~~~ 311 (485)
T PF00118_consen 232 KYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGILVIRRVSKEDLERIARATGASIISSLDDLSDEDLGFCKSVEER 311 (485)
T ss_dssp HHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEEEEEEEEE
T ss_pred hhhccccceEeeeccceeeeecccccccchhhhhhhhhccccchHHHHHhhhcccCCcEecccccccchhhhhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred EECceeEEEEee--------eeEEEeCCC
Q psy17549 393 CLWTKNVTGPTV--------STYSISGFR 413 (418)
Q Consensus 393 ~ig~~~~~~~~~--------~t~~l~g~~ 413 (418)
.+|+++|++|++ ||++|||..
T Consensus 312 ~i~~~~~~~~~~~~~~~~~~~Till~g~t 340 (485)
T PF00118_consen 312 EIGNKKYIFIEGIGCLSSKICTILLRGPT 340 (485)
T ss_dssp EETSSEEEEEEEHSESSSSEEEEEEEESS
T ss_pred ccccccccccccccccccCceEEEecccc
Confidence 999999999983 699999954
No 27
>KOG0360|consensus
Probab=100.00 E-value=2.2e-61 Score=472.75 Aligned_cols=353 Identities=35% Similarity=0.538 Sum_probs=327.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHHHHHHhhhhccccc
Q psy17549 56 EEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSKVQDDEV 135 (418)
Q Consensus 56 ~~~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~ 135 (418)
+...|+..|..|..|+..+++++++||||-|++||++|. .|++++||||+|||+.|.++||++|+|++.++.|++++
T Consensus 13 e~~sg~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd---~Gdvt~TndgAtiL~~l~V~HPa~KiLvelaq~qd~ev 89 (545)
T KOG0360|consen 13 ERLSGERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDD---IGDVTITNDGATILSLLEVEHPAAKVLVELAQLQDEEV 89 (545)
T ss_pred CcccchhhhhhhhHHHHHHHHHHHhccCccchhhhcccc---ccceEEeccHHHHHHhhhhcchHHHHHHHHHHhccccc
Confidence 457889999999999999999999999999999999999 59999999999999999999999999999999999999
Q ss_pred cCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHh-hccccCCCchhhHHHHHHHHHhhccccccch
Q psy17549 136 GDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALRE-ASIDNGLNSEKFREDLLNIARTTLSSKILSQ 214 (418)
Q Consensus 136 GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~-~s~~~~~~~~~~~~~L~~ia~tsl~sK~~~~ 214 (418)
|||||+++++|++|+++|.+|...++||..|++||+.|+..+++++.+ .+++++.. .++.|.++++|+++||+.+.
T Consensus 90 gDgttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~l---g~~~Lin~~ktsmsSK~i~~ 166 (545)
T KOG0360|consen 90 GDGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSL---GTQILINLAKTSMSSKIIGM 166 (545)
T ss_pred cCCceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhc---chHHHHHHHHhhhcceeccc
Confidence 999999999999999999999999999999999999999999999864 56665532 36889999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhc---c----CCCcceEEEEccCCCcccceeeeeEEEeccCC-CCCcceecCceEEEeeccccc
Q psy17549 215 HKEYFSKLAVDAVLRLKG---S----GNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIG-QHQPKRIENAKLLIANTPMDT 286 (418)
Q Consensus 215 ~~~~ls~lvv~Av~~v~~---~----~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~-~~~~~~i~n~kIlll~~~Le~ 286 (418)
..++|++++++|+..+.- + .-++.++|.|-.|.+..+|.+++|+.++.... ..||+++.|+||+++++.|+.
T Consensus 167 ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~m~~~i~~~Kiacld~~Lqk 246 (545)
T KOG0360|consen 167 DSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQMMPLRIKNAKIACLDFTLQK 246 (545)
T ss_pred chHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHhhhccccccccceeeeEeccccc
Confidence 999999999999987731 1 23578999999999999999999999998875 479999999999999999999
Q ss_pred ccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcCceEEecCCHHHHHHHHHH
Q psy17549 287 DKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLALV 366 (418)
Q Consensus 287 ~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~~~~L~ria~~ 366 (418)
.+... +..+.+.++++++++...|....++.+++|.+.|+|||+++++|||+.++||.++|++++||++++||++|+++
T Consensus 247 ~km~l-Gv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veagamAVrR~~k~dlk~iaka 325 (545)
T KOG0360|consen 247 TKMKL-GVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIAKA 325 (545)
T ss_pred ccccc-cceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHHHh
Confidence 88887 58899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeeccccCC------CCCCCceeeeeEEEEEECceeEEEEe-----eeeEEEeCCCcc
Q psy17549 367 TGGEIVSTFDN------PDQVKLGKCDLIEEVCLWTKNVTGPT-----VSTYSISGFRYI 415 (418)
Q Consensus 367 tGa~iv~~l~~------l~~~~lG~~~~v~~~~ig~~~~~~~~-----~~t~~l~g~~~~ 415 (418)
||+++++++.+ +++..+|+|+.|.+.+||++.++++. .|.++|||.++.
T Consensus 326 tGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka~~aSiILrgaNd~ 385 (545)
T KOG0360|consen 326 TGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKATSASIILRGANDF 385 (545)
T ss_pred hCCeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCccceeeEEEecCCcc
Confidence 99999999975 45567999999999999999999997 489999997654
No 28
>KOG0364|consensus
Probab=100.00 E-value=4.5e-61 Score=466.72 Aligned_cols=360 Identities=27% Similarity=0.427 Sum_probs=341.2
Q ss_pred cchhhccchhhhhhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHHHHH
Q psy17549 46 NPVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILV 125 (418)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~akll~ 125 (418)
.|+..+..++..++|..+...|++|++++||++++|+||+.|.||+.++. |.+.+||||..|++++++.||+|+-+.
T Consensus 3 apv~~~~~~~~re~g~kvq~~ni~aak~iadvirtclgp~am~kmlld~~---g~i~~tndg~ailrei~Vahpaaksmi 79 (527)
T KOG0364|consen 3 APVLVLSKNTKRESGRKVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPM---GGIVLTNDGNAILREIDVAHPAAKSMI 79 (527)
T ss_pred CceeecccccCcCccccccccchhhHHHHHHHHHHhcChHHHHHHhhccC---CceEEecCcHHHHHHHhhcCcchhhHh
Confidence 46667778888899999999999999999999999999999999999994 999999999999999999999999999
Q ss_pred HhhhhccccccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHh
Q psy17549 126 DMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIART 205 (418)
Q Consensus 126 ~~~~~~~~~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~t 205 (418)
+++..||+++|||||||++|++|+|.++..++++|+||..|+++|.+|++.++..+++.+.+++.++ ...++.++++
T Consensus 80 el~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~---~~km~~vi~~ 156 (527)
T KOG0364|consen 80 ELSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKD---QAKMLRVINS 156 (527)
T ss_pred hhhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCccc---HHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999988653 5778999999
Q ss_pred hccccccchhhHHHHHHHHHHHHHhhcc----CCC-cceEEEEccCCCcccceeeeeEEEeccCCCC-CcceecCceEEE
Q psy17549 206 TLSSKILSQHKEYFSKLAVDAVLRLKGS----GNL-SAIQIIKKKGGCLEDSFLDEGFLLDKKIGQH-QPKRIENAKLLI 279 (418)
Q Consensus 206 sl~sK~~~~~~~~ls~lvv~Av~~v~~~----~~~-~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~~-~~~~i~n~kIll 279 (418)
++.+|+.+.|.+.++.++.+|+.+++.+ +|+ ++.++.|++||.+++|++++|+.+.++..|+ |.+.++||||++
T Consensus 157 ~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpkmrr~IenprivL 236 (527)
T KOG0364|consen 157 SVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPKMRRAIENPRIVL 236 (527)
T ss_pred hhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCcccccccceecceeeccccCcHHHHHHhhcCcEEE
Confidence 9999999999999999999999999743 666 5889999999999999999999999999875 899999999999
Q ss_pred eecccccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcCceEEecCCHHH
Q psy17549 280 ANTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDG 359 (418)
Q Consensus 280 l~~~Le~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~~~~ 359 (418)
++|||||.+.+. ++.+.+.-.+++....+-|++++..+++.|....+++|+++++++|.+++||-+.||.+++|+.+.|
T Consensus 237 lD~~LeykkGeS-qtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~rKtD 315 (527)
T KOG0364|consen 237 LDCPLEYKKGES-QTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLRKTD 315 (527)
T ss_pred ecCCccCCCCcc-ccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCchhhhhhhccc
Confidence 999999999987 5889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeeccccCCCCCCCce-eeeeEEEEEECceeEEEEee------eeEEEeCC
Q psy17549 360 IERLALVTGGEIVSTFDNPDQVKLG-KCDLIEEVCLWTKNVTGPTV------STYSISGF 412 (418)
Q Consensus 360 L~ria~~tGa~iv~~l~~l~~~~lG-~~~~v~~~~ig~~~~~~~~~------~t~~l~g~ 412 (418)
..|++++|||+++++.+|+.+.+.| .|+.|+.+.+|++.|+||+. ||++|||.
T Consensus 316 n~ria~acga~iv~rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pkaCtillrg~ 375 (527)
T KOG0364|consen 316 NNRIARACGARIVNRPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPKACTILLRGP 375 (527)
T ss_pred cchhhhhcCceeccChhhCchhccCcccceeeeeccCchhhhhhhhcCCCcceEEEeccC
Confidence 9999999999999999999999999 58899999999999999995 69999994
No 29
>KOG0359|consensus
Probab=100.00 E-value=3.6e-59 Score=452.83 Aligned_cols=353 Identities=31% Similarity=0.467 Sum_probs=331.5
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHHHHHHhhhh
Q psy17549 51 LKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSKV 130 (418)
Q Consensus 51 ~~~~~~~~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~akll~~~~~~ 130 (418)
+.+..+..+...|...|++++..+.+++++.+||+|..||++++ .|++.+|+||.+++++|+++||.+-++..++.+
T Consensus 6 lnpkAEv~~~~aal~iNis~AigLqsV~~snlgPkgt~Kmlvsg---agdIklakdgnvLl~emQiqhPTa~lIakaatA 82 (520)
T KOG0359|consen 6 LNPKAEVAQHQAALALNISAAIGLQSVLVLNLGPKGTEKMLVSG---AGDIKLAKDGNVLLKEMQIQHPTASLIAKVATA 82 (520)
T ss_pred CCcHHHHHhhhcceeeccccccceeeeehhccCchhHHHhccCC---ccceEEEecchhhHHHHhhcCchHHHHHHHHHH
Confidence 34455566777888899999999999999999999999999999 499999999999999999999999999999999
Q ss_pred ccccccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHhhcccc
Q psy17549 131 QDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSK 210 (418)
Q Consensus 131 ~~~~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~tsl~sK 210 (418)
|++..|||||++|+|+++++++|..++..|+||..|.+||+.|.+.++++|++.+.+++ ++.|..+++|++.+|
T Consensus 83 qdd~tGDGttS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~------~~~L~~va~tsl~Tk 156 (520)
T KOG0359|consen 83 QDDITGDGTTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVD------RETLKDVARTSLRTK 156 (520)
T ss_pred hhcccCCCcceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchh------HHHHHHHHHHhhcCc
Confidence 99999999999999999999999999999999999999999999999999996555443 588999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHhhc---cCCCcceEEEEccCCCcccceeeeeEEEeccCCC-CCcceecCceEEEeeccccc
Q psy17549 211 ILSQHKEYFSKLAVDAVLRLKG---SGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQ-HQPKRIENAKLLIANTPMDT 286 (418)
Q Consensus 211 ~~~~~~~~ls~lvv~Av~~v~~---~~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~-~~~~~i~n~kIlll~~~Le~ 286 (418)
+...-.+.+++++++|+..+.+ .+|+.++++.++...+..|+.+++|.|++++..| .||++++|+.|+++|.+|||
T Consensus 157 v~~~la~~lt~~vv~aVl~i~~~~~~idl~mveim~mq~~s~~dT~~v~glvLdhg~rHpdmp~~~e~a~iL~~NvSLEY 236 (520)
T KOG0359|consen 157 VHAELADVLTPIVVDSVLCIRRQEEPIDLFMVEIMEMQHKSLHDTSLVQGLVLDHGARHPDMPRRVEDAYILICNVSLEY 236 (520)
T ss_pred ccHHHHhHhHHHHHhhheeeccCCCCcchhHHHhhhhccCchhhhHHhhhhhccCCCCCcccccchhceEEEEeeccccc
Confidence 9999999999999999998862 4788999999999999999999999999999876 79999999999999999999
Q ss_pred ccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCc----eEEEeccccccchHHHHHHcCceEEecCCHHHHHH
Q psy17549 287 DKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNA----NVFINRQLIYNYPEQLFADAGVMAIEHADFDGIER 362 (418)
Q Consensus 287 ~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv----~vVl~~~~I~d~a~~~l~~~gI~vv~~v~~~~L~r 362 (418)
+|+|.+ +.+.+++.+|.+.+..+|++++.+.+++|++++- -||++|+||||..++.|++.||+++||.++..|||
T Consensus 237 EK~Ein-sgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmER 315 (520)
T KOG0359|consen 237 EKPEIN-SGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNMER 315 (520)
T ss_pred cccccc-cchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhHHH
Confidence 999996 7899999999999999999999999999998873 68899999999999999999999999999999999
Q ss_pred HHHHhCCeeccccCCCCCCCceeeeeEEEEEECceeEEEEee------eeEEEeCCC
Q psy17549 363 LALVTGGEIVSTFDNPDQVKLGKCDLIEEVCLWTKNVTGPTV------STYSISGFR 413 (418)
Q Consensus 363 ia~~tGa~iv~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~------~t~~l~g~~ 413 (418)
+..+||+..+++++|++|+.+|+|+.|+|.++|+++|+|+++ ||+|+||.+
T Consensus 316 L~lacGG~a~nsvddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p~S~TiLikgpn 372 (520)
T KOG0359|consen 316 LVLACGGEAVNSVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNPSSVTILIKGPN 372 (520)
T ss_pred HHHhhccceecccccCChhhccccceeEEeeccceeeEeeecCCCCcceEEEEeCCc
Confidence 999999999999999999999999999999999999999994 799999954
No 30
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.4e-56 Score=470.03 Aligned_cols=299 Identities=23% Similarity=0.333 Sum_probs=268.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccCh----HHHHHHHhhhhccc
Q psy17549 58 EKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNP----AAKILVDMSKVQDD 133 (418)
Q Consensus 58 ~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP----~akll~~~~~~~~~ 133 (418)
..+++++..|++|+..++++++|||||+||+|||+++ .|+++|||||+||+++|+++|| +|+|++++|++|++
T Consensus 6 ~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~---~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd~ 82 (542)
T PRK12849 6 KFDEEARRALERGVNKLADAVKVTLGPKGRNVVIDKS---FGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTND 82 (542)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECC---CCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcCC
Confidence 4678999999999999999999999999999999999 4999999999999999999999 99999999999999
Q ss_pred cccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHhhccccccc
Q psy17549 134 EVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILS 213 (418)
Q Consensus 134 ~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~tsl~sK~~~ 213 (418)
++||||||+++|+++||++|.+|+++|+||..|++||+.|++.++++|++++++++. .++|.++++|+.
T Consensus 83 e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~-----~~~l~~va~ts~------ 151 (542)
T PRK12849 83 VAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSG-----SEEIAQVATISA------ 151 (542)
T ss_pred ccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCC-----HHHHHHHHHHhc------
Confidence 999999999999999999999999999999999999999999999999999998752 467999998874
Q ss_pred hhhHHHHHHHHHHHHHhhccCCCcceEEEEccCCCccc-ceeeeeEEEeccCCC--------CCcceecCceEEEeeccc
Q psy17549 214 QHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKKGGCLED-SFLDEGFLLDKKIGQ--------HQPKRIENAKLLIANTPM 284 (418)
Q Consensus 214 ~~~~~ls~lvv~Av~~v~~~~~~~~I~I~ki~Ggs~~d-S~lv~Givl~~~~~~--------~~~~~i~n~kIlll~~~L 284 (418)
++++.+++++++|+..++.+.. +.+. .|++++| +++++|++|++++.+ .|+++++||+|+++++.
T Consensus 152 ~~~~~l~~lv~~Av~~v~~~g~---i~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~- 225 (542)
T PRK12849 152 NGDEEIGELIAEAMEKVGKDGV---ITVE--ESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKK- 225 (542)
T ss_pred CChHHHHHHHHHHHHHhccCCc---EeEE--eCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCC-
Confidence 3789999999999999865432 3343 7888876 799999999999863 25889999999999973
Q ss_pred ccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHc------CceEEecCC--
Q psy17549 285 DTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADA------GVMAIEHAD-- 356 (418)
Q Consensus 285 e~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~------gI~vv~~v~-- 356 (418)
+++++++. .+++++.+.|+++|+++++|+|.++++|.++ ||+++++++
T Consensus 226 -------------i~~~~~~~-----------~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~ 281 (542)
T PRK12849 226 -------------ISSLQDLL-----------PLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFG 281 (542)
T ss_pred -------------cCCHHHHH-----------HHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCcc
Confidence 34444443 3678889999999999999999999999999 999999988
Q ss_pred ---HHHHHHHHHHhCCeecc-----ccCCCCCCCceeeeeEEEEEECceeEEEEe
Q psy17549 357 ---FDGIERLALVTGGEIVS-----TFDNPDQVKLGKCDLIEEVCLWTKNVTGPT 403 (418)
Q Consensus 357 ---~~~L~ria~~tGa~iv~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~ 403 (418)
+++|+|||++|||++++ +++++++++||+|+.|++.+ ++|++|+
T Consensus 282 ~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~ 333 (542)
T PRK12849 282 DRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITK---DNTTIVD 333 (542)
T ss_pred chhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEee---eeEEEEe
Confidence 45599999999999999 68999999999999999865 8899996
No 31
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.5e-56 Score=468.23 Aligned_cols=302 Identities=24% Similarity=0.356 Sum_probs=273.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccCh----HHHHHHHhhhhcc
Q psy17549 57 EEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNP----AAKILVDMSKVQD 132 (418)
Q Consensus 57 ~~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP----~akll~~~~~~~~ 132 (418)
...|.+++..|++|+..++++++|||||+||+|||+++ .|+++|||||+||+++|+++|| +|+|++++|++|+
T Consensus 5 ~~~~~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~---~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~qd 81 (542)
T PRK00013 5 IKFGEDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKS---FGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTN 81 (542)
T ss_pred hhchHHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECC---CCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhcC
Confidence 35678999999999999999999999999999999999 4999999999999999999999 7999999999999
Q ss_pred ccccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHhhcccccc
Q psy17549 133 DEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKIL 212 (418)
Q Consensus 133 ~~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~tsl~sK~~ 212 (418)
+++||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|++++++++ + .++|.+++.|++
T Consensus 82 ~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~-~----~~~l~~va~ts~----- 151 (542)
T PRK00013 82 DVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVE-D----KEEIAQVATISA----- 151 (542)
T ss_pred cccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCC-C----HHHHHHHHHhcc-----
Confidence 999999999999999999999999999999999999999999999999999999875 2 477999998764
Q ss_pred chhhHHHHHHHHHHHHHhhccCCCcceEEEEccCCCcccceeeeeEEEeccCCC--------CCcceecCceEEEeeccc
Q psy17549 213 SQHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQ--------HQPKRIENAKLLIANTPM 284 (418)
Q Consensus 213 ~~~~~~ls~lvv~Av~~v~~~~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~--------~~~~~i~n~kIlll~~~L 284 (418)
++++.+++++++|+..++.+. .|+|.+..| ..++|++++|++|++++.+ .|++.++||+|+++|+.
T Consensus 152 -~~~~~ls~lv~~Av~~v~~~g---~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~- 225 (542)
T PRK00013 152 -NGDEEIGKLIAEAMEKVGKEG---VITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKK- 225 (542)
T ss_pred -cchHHHHHHHHHHHHHhCcCC---cEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCc-
Confidence 368999999999999986543 478887777 8889999999999999863 25889999999999973
Q ss_pred ccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcC------ceEEecCC--
Q psy17549 285 DTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAG------VMAIEHAD-- 356 (418)
Q Consensus 285 e~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~g------I~vv~~v~-- 356 (418)
+++++++. .+++.|.+.|++||+++++|+|.++++|.+++ |+++++++
T Consensus 226 -------------i~~~~~l~-----------~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~ 281 (542)
T PRK00013 226 -------------ISNIQDLL-----------PVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFG 281 (542)
T ss_pred -------------cCCHHHHH-----------HHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcc
Confidence 34455543 56888999999999999999999999999996 99999887
Q ss_pred ---HHHHHHHHHHhCCeecc-----ccCCCCCCCceeeeeEEEEEECceeEEEEee
Q psy17549 357 ---FDGIERLALVTGGEIVS-----TFDNPDQVKLGKCDLIEEVCLWTKNVTGPTV 404 (418)
Q Consensus 357 ---~~~L~ria~~tGa~iv~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 404 (418)
+++|+|||++|||++++ +++++++++||+|+.|++.. ++|++|++
T Consensus 282 ~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~ 334 (542)
T PRK00013 282 DRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTK---DNTTIVDG 334 (542)
T ss_pred cchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEec---CEEEEEeC
Confidence 88999999999999999 79999999999999999875 88999974
No 32
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=3.8e-56 Score=468.74 Aligned_cols=300 Identities=26% Similarity=0.349 Sum_probs=270.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccCh----HHHHHHHhhhhc
Q psy17549 56 EEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNP----AAKILVDMSKVQ 131 (418)
Q Consensus 56 ~~~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP----~akll~~~~~~~ 131 (418)
+..++++++..|++||..++++++|||||+||+|||+++ .|+++|||||+||+++|+++|| +|+|++++|++|
T Consensus 16 ~~~~~~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~---~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~q 92 (555)
T PTZ00114 16 EIRFGDEARQSLLKGIERLADAVAVTLGPKGRNVIIEQE---YGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKT 92 (555)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECC---CCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHhh
Confidence 356788999999999999999999999999999999998 5999999999999999999998 999999999999
Q ss_pred cccccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHhhccccc
Q psy17549 132 DDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKI 211 (418)
Q Consensus 132 ~~~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~tsl~sK~ 211 (418)
++++||||||+++||++||+++.+++++|+||..|++||+.|.+.++++|++++++++. .++|.++|+|+.+
T Consensus 93 d~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~~-----~~~l~~va~ts~~--- 164 (555)
T PTZ00114 93 NDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVKT-----KEDILNVATISAN--- 164 (555)
T ss_pred ccccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCC-----HHHHHHHHHHHcC---
Confidence 99999999999999999999999999999999999999999999999999999998852 4679999988754
Q ss_pred cchhhHHHHHHHHHHHHHhhccCCCcceEEEEccCCCcccc-eeeeeEEEeccCCC-C-------CcceecCceEEEeec
Q psy17549 212 LSQHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKKGGCLEDS-FLDEGFLLDKKIGQ-H-------QPKRIENAKLLIANT 282 (418)
Q Consensus 212 ~~~~~~~ls~lvv~Av~~v~~~~~~~~I~I~ki~Ggs~~dS-~lv~Givl~~~~~~-~-------~~~~i~n~kIlll~~ 282 (418)
+++.+++++++|+..++.+.. |.+.+|+++++| ++++|++|++++.+ . |++.++||+|+++|+
T Consensus 165 ---~~~~l~~li~eAv~~vg~~g~-----I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~ 236 (555)
T PTZ00114 165 ---GDVEIGSLIADAMDKVGKDGT-----ITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDK 236 (555)
T ss_pred ---ChHHHHHHHHHHHHHhCcCCc-----EEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcC
Confidence 368899999999999875432 677799999998 79999999999863 2 588999999999999
Q ss_pred ccccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcC------ceEEec--
Q psy17549 283 PMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAG------VMAIEH-- 354 (418)
Q Consensus 283 ~Le~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~g------I~vv~~-- 354 (418)
+|+ ++++ +..+++++.+.|+++++++++|++.++++|.+++ |+++++
T Consensus 237 ~L~--------------~~~~-----------i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~ 291 (555)
T PTZ00114 237 KIS--------------SIQS-----------ILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPG 291 (555)
T ss_pred CCC--------------CHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCC
Confidence 775 2233 4456788999999999999999999999999986 999987
Q ss_pred ---CCHHHHHHHHHHhCCeecccc------CCCCCCCceeeeeEEEEEECceeEEEE
Q psy17549 355 ---ADFDGIERLALVTGGEIVSTF------DNPDQVKLGKCDLIEEVCLWTKNVTGP 402 (418)
Q Consensus 355 ---v~~~~L~ria~~tGa~iv~~l------~~l~~~~lG~~~~v~~~~ig~~~~~~~ 402 (418)
+++++|+|||.+|||+++++. ++++++++|+|+.|++.+ +++++|
T Consensus 292 ~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~---~~~~~~ 345 (555)
T PTZ00114 292 FGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTK---DETVIL 345 (555)
T ss_pred CCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEe---ceEEEE
Confidence 677999999999999999997 788888999999999998 455565
No 33
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=9.1e-56 Score=462.58 Aligned_cols=299 Identities=23% Similarity=0.356 Sum_probs=269.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccCh----HHHHHHHhhhhccc
Q psy17549 58 EKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNP----AAKILVDMSKVQDD 133 (418)
Q Consensus 58 ~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP----~akll~~~~~~~~~ 133 (418)
.+|.+++..|++||..++++++|||||+||+|||+++ .|+++|||||+||+++|+++|| +|+|+++++++|++
T Consensus 4 ~~g~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~---~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~ 80 (520)
T cd03344 4 KFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKS---FGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTND 80 (520)
T ss_pred cchHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECC---CCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhcc
Confidence 4678899999999999999999999999999999999 4999999999999999999999 99999999999999
Q ss_pred cccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHhhccccccc
Q psy17549 134 EVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILS 213 (418)
Q Consensus 134 ~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~tsl~sK~~~ 213 (418)
++||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|++++++++ + .++|.++|+|+++
T Consensus 81 e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~-~----~~~l~~va~ts~~----- 150 (520)
T cd03344 81 VAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVK-T----KEEIAQVATISAN----- 150 (520)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCC-C----HHHHHHHHHHhcC-----
Confidence 99999999999999999999999999999999999999999999999999999885 2 4789999998875
Q ss_pred hhhHHHHHHHHHHHHHhhccCCCcceEEEEccCCCccc-ceeeeeEEEeccCCC-C-------CcceecCceEEEeeccc
Q psy17549 214 QHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKKGGCLED-SFLDEGFLLDKKIGQ-H-------QPKRIENAKLLIANTPM 284 (418)
Q Consensus 214 ~~~~~ls~lvv~Av~~v~~~~~~~~I~I~ki~Ggs~~d-S~lv~Givl~~~~~~-~-------~~~~i~n~kIlll~~~L 284 (418)
.++.+++++++|+..++.+. .|.+ .+|++.+| +++++|++|++++.+ . |+++++||+|+++|+++
T Consensus 151 -~~~~l~~lv~~A~~~v~~~~---~i~v--~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l 224 (520)
T cd03344 151 -GDEEIGELIAEAMEKVGKDG---VITV--EEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKI 224 (520)
T ss_pred -ChHHHHHHHHHHHHHhccCC---cEEE--EeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCC
Confidence 37899999999999986543 2444 58999988 799999999999763 2 44689999999999864
Q ss_pred ccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcCc------eEEecC---
Q psy17549 285 DTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGV------MAIEHA--- 355 (418)
Q Consensus 285 e~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI------~vv~~v--- 355 (418)
++++++ ..+++++.+.|++||+++++|+|.++++|.+++| +++++.
T Consensus 225 --------------~~~~~l-----------~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~ 279 (520)
T cd03344 225 --------------SSIQEL-----------LPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFG 279 (520)
T ss_pred --------------CCHHHH-----------HHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCC
Confidence 334443 3357889999999999999999999999999999 898876
Q ss_pred --CHHHHHHHHHHhCCeecc-----ccCCCCCCCceeeeeEEEEEECceeEEEEe
Q psy17549 356 --DFDGIERLALVTGGEIVS-----TFDNPDQVKLGKCDLIEEVCLWTKNVTGPT 403 (418)
Q Consensus 356 --~~~~L~ria~~tGa~iv~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~ 403 (418)
++++|+|||++|||++++ ++++++++++|+|+.|++.+ ++|++|+
T Consensus 280 ~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~ 331 (520)
T cd03344 280 DRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK---DDTTIIG 331 (520)
T ss_pred cccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEee---ceEEEEe
Confidence 889999999999999999 78899989999999999987 7888886
No 34
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.8e-55 Score=461.92 Aligned_cols=301 Identities=21% Similarity=0.313 Sum_probs=270.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccCh----HHHHHHHhhhhccc
Q psy17549 58 EKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNP----AAKILVDMSKVQDD 133 (418)
Q Consensus 58 ~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP----~akll~~~~~~~~~ 133 (418)
..+++++..|++|++.++++++|||||+||+|||+++ .|+++|||||+||+++|+++|| +|+|++++|++|++
T Consensus 7 ~~~~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~---~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~ 83 (541)
T PRK12851 7 KFHVEAREKMLRGVNILADAVKVTLGPKGRNVVIDKS---FGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTND 83 (541)
T ss_pred cccHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECC---CCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhhhH
Confidence 4567899999999999999999999999999999999 4999999999999999999999 99999999999999
Q ss_pred cccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHhhccccccc
Q psy17549 134 EVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILS 213 (418)
Q Consensus 134 ~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~tsl~sK~~~ 213 (418)
++||||||+++|+++||++|.+|+++|+||..|++||+.|++.++++|++++++++. .+++.++++++.
T Consensus 84 e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~-----~~~l~~va~~s~------ 152 (541)
T PRK12851 84 VAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTT-----NAEIAQVATISA------ 152 (541)
T ss_pred hhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCC-----HHHHHHHHHHhc------
Confidence 999999999999999999999999999999999999999999999999999998762 367899997754
Q ss_pred hhhHHHHHHHHHHHHHhhccCCCcceEEEEccCCCcccceeeeeEEEeccCCCC--------CcceecCceEEEeecccc
Q psy17549 214 QHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQH--------QPKRIENAKLLIANTPMD 285 (418)
Q Consensus 214 ~~~~~ls~lvv~Av~~v~~~~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~~--------~~~~i~n~kIlll~~~Le 285 (418)
++++.|++++++|+..++.+. .+++.+.. ++..++++++|++|++++.+. |+++++||+|+++|++++
T Consensus 153 ~~~~~l~~lv~~Av~~vg~~g---~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~ 228 (541)
T PRK12851 153 NGDAEIGRLVAEAMEKVGNEG---VITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKIS 228 (541)
T ss_pred cChHHHHHHHHHHHHHhcccC---ceEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcC
Confidence 478999999999999986543 35666555 577889999999999998642 899999999999998632
Q ss_pred cccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcCc------eEEec-----
Q psy17549 286 TDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGV------MAIEH----- 354 (418)
Q Consensus 286 ~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI------~vv~~----- 354 (418)
+.+ .+..+++.+.+.|+++|+++++|+|.++++|.+++| ++|++
T Consensus 229 --------------~~~-----------~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~ 283 (541)
T PRK12851 229 --------------NLQ-----------DLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGD 283 (541)
T ss_pred --------------cHH-----------HHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCcccc
Confidence 211 256778899999999999999999999999999997 88886
Q ss_pred CCHHHHHHHHHHhCCeecc-----ccCCCCCCCceeeeeEEEEEECceeEEEEee
Q psy17549 355 ADFDGIERLALVTGGEIVS-----TFDNPDQVKLGKCDLIEEVCLWTKNVTGPTV 404 (418)
Q Consensus 355 v~~~~L~ria~~tGa~iv~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 404 (418)
+++++|+|||++|||++++ +++++++++||+|+.|++.+ ++|++|++
T Consensus 284 ~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~ 335 (541)
T PRK12851 284 RRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK---ENTTIIDG 335 (541)
T ss_pred ccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc---ceEEEEcC
Confidence 9999999999999999999 68899989999999999988 88889864
No 35
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=1.9e-55 Score=460.84 Aligned_cols=300 Identities=24% Similarity=0.349 Sum_probs=268.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccCh----HHHHHHHhhhhccc
Q psy17549 58 EKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNP----AAKILVDMSKVQDD 133 (418)
Q Consensus 58 ~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP----~akll~~~~~~~~~ 133 (418)
..+++++..|++|+..++++++|||||+||+|||+++ .|+++|||||+||+++|+++|| +|+|++++|++|++
T Consensus 5 ~~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~---~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~ 81 (524)
T TIGR02348 5 KFDEEARKALLRGVDKLADAVKVTLGPKGRNVVLEKS---FGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTND 81 (524)
T ss_pred cccHHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECC---CCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCc
Confidence 4577999999999999999999999999999999998 4999999999999999999999 99999999999999
Q ss_pred cccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHhhccccccc
Q psy17549 134 EVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILS 213 (418)
Q Consensus 134 ~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~tsl~sK~~~ 213 (418)
++||||||+++|+++||++|.+++++|+||..|++||+.|++.++++|++++++++ + .+++.++++|+.
T Consensus 82 e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~-~----~~~l~~va~ts~------ 150 (524)
T TIGR02348 82 VAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVK-G----KKEIAQVATISA------ 150 (524)
T ss_pred eeCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCC-C----HHHHHHHHHHhc------
Confidence 99999999999999999999999999999999999999999999999999999886 2 478999998764
Q ss_pred hhhHHHHHHHHHHHHHhhccCCCcceEEEEccCCCc-ccceeeeeEEEeccCCC-C-------CcceecCceEEEeeccc
Q psy17549 214 QHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKKGGCL-EDSFLDEGFLLDKKIGQ-H-------QPKRIENAKLLIANTPM 284 (418)
Q Consensus 214 ~~~~~ls~lvv~Av~~v~~~~~~~~I~I~ki~Ggs~-~dS~lv~Givl~~~~~~-~-------~~~~i~n~kIlll~~~L 284 (418)
++++.+++++++|+..++.+. .|.|. .|+.. ++|++++|++|++++.+ . |++.++||+|+++++.
T Consensus 151 ~~~~~l~~lv~~A~~~v~~~~---~i~v~--~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~- 224 (524)
T TIGR02348 151 NNDEEIGSLIAEAMEKVGKDG---VITVE--ESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKK- 224 (524)
T ss_pred cChHHHHHHHHHHHHHhCcCC---cEeee--cCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCC-
Confidence 368999999999999987543 24444 36666 67999999999999864 2 4788999999999984
Q ss_pred ccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHc------CceEEecCCH-
Q psy17549 285 DTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADA------GVMAIEHADF- 357 (418)
Q Consensus 285 e~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~------gI~vv~~v~~- 357 (418)
++++++ +..+++.+.+.|+++|+++++|+|.++++|.++ +|++++++++
T Consensus 225 -------------i~~~~~-----------i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~ 280 (524)
T TIGR02348 225 -------------ISNIKD-----------LLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFG 280 (524)
T ss_pred -------------cCCHHH-----------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCcc
Confidence 334444 356788899999999999999999999999887 8999998865
Q ss_pred ----HHHHHHHHHhCCeecc-----ccCCCCCCCceeeeeEEEEEECceeEEEEee
Q psy17549 358 ----DGIERLALVTGGEIVS-----TFDNPDQVKLGKCDLIEEVCLWTKNVTGPTV 404 (418)
Q Consensus 358 ----~~L~ria~~tGa~iv~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 404 (418)
++|+|||++|||++++ +++++++++||+|+.|++.. ++|++|++
T Consensus 281 ~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~ 333 (524)
T TIGR02348 281 DRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDK---DNTTIVEG 333 (524)
T ss_pred chhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEee---cEEEEEcC
Confidence 7999999999999999 89999999999999999886 78899975
No 36
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=6.4e-55 Score=458.12 Aligned_cols=300 Identities=21% Similarity=0.316 Sum_probs=266.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChH----HHHHHHhhhhccc
Q psy17549 58 EKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPA----AKILVDMSKVQDD 133 (418)
Q Consensus 58 ~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~----akll~~~~~~~~~ 133 (418)
..+++++..|++||..++++++|||||+||+|||+++ .|+++|||||+||+++|+++||+ |+|++++|++|++
T Consensus 7 ~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~---~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~qd~ 83 (544)
T PRK12850 7 RFSTDARDRLLRGVNILANAVKVTLGPKGRNVVLEKS---FGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTND 83 (544)
T ss_pred cccHHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECC---CCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhhcc
Confidence 4577899999999999999999999999999999999 49999999999999999999999 9999999999999
Q ss_pred cccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHhhccccccc
Q psy17549 134 EVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILS 213 (418)
Q Consensus 134 ~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~tsl~sK~~~ 213 (418)
++||||||+++|+++||++|.+|+++|+||..|++||+.|++.++++|++++.+++ + .++|.++++++++
T Consensus 84 e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~-~----~~~l~~va~~s~~----- 153 (544)
T PRK12850 84 LAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVT-S----SKEIAQVATISAN----- 153 (544)
T ss_pred hhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCC-C----HHHHHHHHHHhcC-----
Confidence 99999999999999999999999999999999999999999999999999998875 2 4779999987754
Q ss_pred hhhHHHHHHHHHHHHHhhccCCCcceEEEEccCCCcccceeeeeEEEeccCCC-C-------CcceecCceEEEeecccc
Q psy17549 214 QHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQ-H-------QPKRIENAKLLIANTPMD 285 (418)
Q Consensus 214 ~~~~~ls~lvv~Av~~v~~~~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~-~-------~~~~i~n~kIlll~~~Le 285 (418)
.++.+++++++|+..++.+..+ +++..+..| .++++++|++|++++.+ . |++.++||+|+++|+.+
T Consensus 154 -~~~~l~~lv~eAv~~vg~~g~i-~v~~~~~~g---~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i- 227 (544)
T PRK12850 154 -GDESIGEMIAEAMDKVGKEGVI-TVEEAKTLG---TELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKI- 227 (544)
T ss_pred -CHHHHHHHHHHHHHHhcccCce-eeEEccccC---cceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEeccc-
Confidence 3789999999999999754321 222233333 68899999999999864 2 48899999999999832
Q ss_pred cccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcCc------eEEec-----
Q psy17549 286 TDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGV------MAIEH----- 354 (418)
Q Consensus 286 ~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI------~vv~~----- 354 (418)
++.+ .+..+++.+.+.|++||+++++|+|.++++|.+++| ++|++
T Consensus 228 -------------~~~~-----------~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~ 283 (544)
T PRK12850 228 -------------SNLQ-----------DLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGD 283 (544)
T ss_pred -------------CCHH-----------HHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCc
Confidence 2222 266778999999999999999999999999999999 99998
Q ss_pred CCHHHHHHHHHHhCCeecc-----ccCCCCCCCceeeeeEEEEEECceeEEEEe
Q psy17549 355 ADFDGIERLALVTGGEIVS-----TFDNPDQVKLGKCDLIEEVCLWTKNVTGPT 403 (418)
Q Consensus 355 v~~~~L~ria~~tGa~iv~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~ 403 (418)
+++++|+|||++|||++++ +++++++++||+|+.|++.. ++|++|+
T Consensus 284 ~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~ 334 (544)
T PRK12850 284 RRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITK---ENTTIID 334 (544)
T ss_pred ccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEe---eeEEEEe
Confidence 8899999999999999999 78999999999999999886 7899986
No 37
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4.2e-54 Score=452.66 Aligned_cols=299 Identities=21% Similarity=0.310 Sum_probs=265.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccc----cChHHHHHHHhhhhccc
Q psy17549 58 EKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGV----DNPAAKILVDMSKVQDD 133 (418)
Q Consensus 58 ~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~----~hP~akll~~~~~~~~~ 133 (418)
..++++++.|++|+..++++++|||||+||+|||+++ .|+++|||||+||+++|++ +||+|+|++++|++|++
T Consensus 7 ~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~---~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q~~ 83 (545)
T PRK12852 7 KFSGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKS---FGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTND 83 (545)
T ss_pred hccHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECC---CCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhcCc
Confidence 4567899999999999999999999999999999999 4999999999999999999 59999999999999999
Q ss_pred cccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHhhccccccc
Q psy17549 134 EVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILS 213 (418)
Q Consensus 134 ~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~tsl~sK~~~ 213 (418)
++||||||+++||++||++|.+|+++|+||..|++||+.|++.+++.|++++++++.+ +++.++++++.+
T Consensus 84 e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~-----~~l~~va~~s~~----- 153 (545)
T PRK12852 84 LAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASS-----AEIAQVGTISAN----- 153 (545)
T ss_pred eecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCH-----HHHHHHHhhhcC-----
Confidence 9999999999999999999999999999999999999999999999999999988632 568999877653
Q ss_pred hhhHHHHHHHHHHHHHhhccCCCcceEEEEccCCCc-ccceeeeeEEEeccCCC--------CCcceecCceEEEeeccc
Q psy17549 214 QHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKKGGCL-EDSFLDEGFLLDKKIGQ--------HQPKRIENAKLLIANTPM 284 (418)
Q Consensus 214 ~~~~~ls~lvv~Av~~v~~~~~~~~I~I~ki~Ggs~-~dS~lv~Givl~~~~~~--------~~~~~i~n~kIlll~~~L 284 (418)
.++.+++++++|+.+++++.. |.+. .|+.. .++++++|++|++++.+ .|+..++||+|+++++.
T Consensus 154 -~~~~l~~li~eA~~~vg~~g~---i~v~--~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~- 226 (545)
T PRK12852 154 -GDAAIGKMIAQAMQKVGNEGV---ITVE--ENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKK- 226 (545)
T ss_pred -ChHHHHHHHHHHHHHhccCCc---eeee--cCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCc-
Confidence 368999999999999975432 3344 47775 79999999999999864 27889999999999862
Q ss_pred ccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHc------CceEEecCC--
Q psy17549 285 DTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADA------GVMAIEHAD-- 356 (418)
Q Consensus 285 e~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~------gI~vv~~v~-- 356 (418)
+++++ .+..+++.+.+.|+++|+++++|++.++++|..+ +|++|++.+
T Consensus 227 -------------i~~~~-----------~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~ 282 (545)
T PRK12852 227 -------------LSGLQ-----------AMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFG 282 (545)
T ss_pred -------------cCCHH-----------HHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcc
Confidence 33333 4556789999999999999999999999999886 799999776
Q ss_pred ---HHHHHHHHHHhCCeecc-----ccCCCCCCCceeeeeEEEEEECceeEEEEe
Q psy17549 357 ---FDGIERLALVTGGEIVS-----TFDNPDQVKLGKCDLIEEVCLWTKNVTGPT 403 (418)
Q Consensus 357 ---~~~L~ria~~tGa~iv~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~ 403 (418)
+++|+|||.+|||++++ +++++++++||+|+.|++.+ +++++|+
T Consensus 283 ~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~---~~~~~i~ 334 (545)
T PRK12852 283 DRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK---ENTTIVN 334 (545)
T ss_pred cchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc---cEEEEEe
Confidence 89999999999999999 79999999999999999998 6788885
No 38
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=9.9e-54 Score=448.37 Aligned_cols=301 Identities=21% Similarity=0.304 Sum_probs=262.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHH----HHHHhhhhccc
Q psy17549 58 EKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAK----ILVDMSKVQDD 133 (418)
Q Consensus 58 ~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~ak----ll~~~~~~~~~ 133 (418)
..++++|++.++||..++++++|||||+||+|||+++ .|+++|||||+||+++|+++||+++ |+++++++|++
T Consensus 6 ~~~~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~---~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~~~ 82 (529)
T CHL00093 6 LYQDNARRALERGMDILAEAVSVTLGPKGRNVVLEKK---YGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTND 82 (529)
T ss_pred ecCHHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECC---CCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhcCc
Confidence 4567899999999999999999999999999999998 5999999999999999999999994 88889999999
Q ss_pred cccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHhhccccccc
Q psy17549 134 EVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILS 213 (418)
Q Consensus 134 ~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~tsl~sK~~~ 213 (418)
++||||||+++|+++||++|.+|+++|+||..|++||+.|.+.+++.|++++++++ + .++|.++|+++.
T Consensus 83 e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~-d----~~~L~~VA~ts~------ 151 (529)
T CHL00093 83 VAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVE-D----IQAITQVASISA------ 151 (529)
T ss_pred eecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHhc------
Confidence 99999999999999999999999999999999999999999999999999999886 2 477999998765
Q ss_pred hhhHHHHHHHHHHHHHhhccCCCcceEEEEccCCCcccceeeeeEEEeccCCC-C---Ccc----eecCceEEEeecccc
Q psy17549 214 QHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQ-H---QPK----RIENAKLLIANTPMD 285 (418)
Q Consensus 214 ~~~~~ls~lvv~Av~~v~~~~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~-~---~~~----~i~n~kIlll~~~Le 285 (418)
++++.|++|+++|+.+++++.. |.+. ..+++..++++++|++|++++.+ . +++ .++||+|++++++|+
T Consensus 152 ~~~~~l~~lv~eAv~~vg~~g~---i~~~-~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le 227 (529)
T CHL00093 152 GNDEEVGSMIADAIEKVGREGV---ISLE-EGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKIT 227 (529)
T ss_pred cChHHHHHHHHHHHHHhccCCc---eeec-CCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCC
Confidence 3789999999999999975432 2222 12345677899999999999864 2 243 589999999999988
Q ss_pred cccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHH--HHHH----cCceEEecCCH--
Q psy17549 286 TDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQ--LFAD----AGVMAIEHADF-- 357 (418)
Q Consensus 286 ~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~--~l~~----~gI~vv~~v~~-- 357 (418)
+.+ ..+...++.+.+.|+++|+++++|++.+++ |+++ +||+++++++.
T Consensus 228 ~~~------------------------~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~ 283 (529)
T CHL00093 228 LVQ------------------------QDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGD 283 (529)
T ss_pred chH------------------------HHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCc
Confidence 532 125667888999999999999999995554 5587 59999999854
Q ss_pred ---HHHHHHHHHhCCeecc-----ccCCCCCCCceeeeeEEEEEECceeEEEEe
Q psy17549 358 ---DGIERLALVTGGEIVS-----TFDNPDQVKLGKCDLIEEVCLWTKNVTGPT 403 (418)
Q Consensus 358 ---~~L~ria~~tGa~iv~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~ 403 (418)
++|+|||.+|||++++ +++++++++||+|+.|++.. +++++|+
T Consensus 284 ~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~~~ 334 (529)
T CHL00093 284 RRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTK---DSTTIIA 334 (529)
T ss_pred chHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEec---CEEEEEe
Confidence 7899999999999999 79999999999999999885 7888886
No 39
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=7.6e-53 Score=442.22 Aligned_cols=301 Identities=22% Similarity=0.308 Sum_probs=264.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhcccc----ChHHHHHHHhhhhccc
Q psy17549 58 EKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVD----NPAAKILVDMSKVQDD 133 (418)
Q Consensus 58 ~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~----hP~akll~~~~~~~~~ 133 (418)
..|.+++..|++|+..+++++++||||+||+|||+++ .|+++|||||+||+++|++. ||+|+|++++|++|++
T Consensus 7 ~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~---~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd~ 83 (546)
T PRK14104 7 KFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKS---FGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSAD 83 (546)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcC---CCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhcc
Confidence 4578899999999999999999999999999999998 59999999999999999998 9999999999999999
Q ss_pred cccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHhhccccccc
Q psy17549 134 EVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILS 213 (418)
Q Consensus 134 ~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~tsl~sK~~~ 213 (418)
++||||||+++||++||+++.+++++|+||..|++||+.|++.+++.|++++++++.+ +++.++++++.+
T Consensus 84 e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~-----~~l~~va~~s~~----- 153 (546)
T PRK14104 84 AAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSN-----DEIAQVGTISAN----- 153 (546)
T ss_pred cccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCCH-----HHHHHHHHHHhc-----
Confidence 9999999999999999999999999999999999999999999999999999988632 568899887654
Q ss_pred hhhHHHHHHHHHHHHHhhccCCCcceEEEEccCCCc-ccceeeeeEEEeccCCC--------CCcceecCceEEEeeccc
Q psy17549 214 QHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKKGGCL-EDSFLDEGFLLDKKIGQ--------HQPKRIENAKLLIANTPM 284 (418)
Q Consensus 214 ~~~~~ls~lvv~Av~~v~~~~~~~~I~I~ki~Ggs~-~dS~lv~Givl~~~~~~--------~~~~~i~n~kIlll~~~L 284 (418)
+++.+++++++|+..++.+. .|.+.. +++. +++++++|++|++++.+ .++.+++||+|++++.
T Consensus 154 -~d~~i~~lv~~Av~~vg~~g---~i~v~~--~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~-- 225 (546)
T PRK14104 154 -GDAEIGKFLADAMKKVGNEG---VITVEE--AKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEK-- 225 (546)
T ss_pred -CchHHHHHHHHHHHHhccCC---ceeeEe--cccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehh--
Confidence 45789999999999997543 344442 3455 58999999999999863 2367788999999973
Q ss_pred ccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHH------cCceEEecCC--
Q psy17549 285 DTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFAD------AGVMAIEHAD-- 356 (418)
Q Consensus 285 e~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~------~gI~vv~~v~-- 356 (418)
.++++++ +..+++.+.+.|++||+++++|++.++++|.. .+|+++++.+
T Consensus 226 ------------~i~~~~~-----------i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g 282 (546)
T PRK14104 226 ------------KLSSLNE-----------LLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFG 282 (546)
T ss_pred ------------hhcCHHH-----------HHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCC
Confidence 2344433 55678899999999999999999999999985 5789998887
Q ss_pred ---HHHHHHHHHHhCCeeccc-----cCCCCCCCceeeeeEEEEEECceeEEEEeee
Q psy17549 357 ---FDGIERLALVTGGEIVST-----FDNPDQVKLGKCDLIEEVCLWTKNVTGPTVS 405 (418)
Q Consensus 357 ---~~~L~ria~~tGa~iv~~-----l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~ 405 (418)
+++|+|||.+|||+++++ ++++++++||+|+.|++ +++++++|++|
T Consensus 283 ~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~ 336 (546)
T PRK14104 283 DRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMI---DKENTTIVNGA 336 (546)
T ss_pred cchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEE---cCCEEEEEeCC
Confidence 789999999999999999 89999999999999884 78899999743
No 40
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=3.9e-53 Score=447.21 Aligned_cols=294 Identities=22% Similarity=0.351 Sum_probs=263.4
Q ss_pred hhhH--HHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccCh----HHHHHHHhhhhc
Q psy17549 58 EKSE--IARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNP----AAKILVDMSKVQ 131 (418)
Q Consensus 58 ~~~~--~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP----~akll~~~~~~~ 131 (418)
..|+ +||+..+.||+.+++++++||||+||+|||+++ .|+++|||||+||+++|+++|| +|+|++++|++|
T Consensus 60 ~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~---~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q 136 (600)
T PLN03167 60 HFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESK---YGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKT 136 (600)
T ss_pred ecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECC---CCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhh
Confidence 3455 799999999999999999999999999999999 5999999999999999999999 599999999999
Q ss_pred cccccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHhhccccc
Q psy17549 132 DDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKI 211 (418)
Q Consensus 132 ~~~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~tsl~sK~ 211 (418)
++++||||||+++|+++||+++.++++.|+||..|++||+.|.+.+++.|++++.+++ + ++|.++|.++.+
T Consensus 137 d~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~-d-----~~L~~vA~tS~~--- 207 (600)
T PLN03167 137 NDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVE-D-----SELADVAAVSAG--- 207 (600)
T ss_pred hhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC-H-----HHHHHHHHHhcc---
Confidence 9999999999999999999999999999999999999999999999999999998874 1 569999988753
Q ss_pred cchhhHHHHHHHHHHHHHhhccCCCcceEEEEccCCCcccc-eeeeeEEEeccCCC--------CCcceecCceEEEeec
Q psy17549 212 LSQHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKKGGCLEDS-FLDEGFLLDKKIGQ--------HQPKRIENAKLLIANT 282 (418)
Q Consensus 212 ~~~~~~~ls~lvv~Av~~v~~~~~~~~I~I~ki~Ggs~~dS-~lv~Givl~~~~~~--------~~~~~i~n~kIlll~~ 282 (418)
+++.|++|+++|+.+++++.. |...+|++.+|+ ++++|++|++++.+ +|+++++||+|+++++
T Consensus 208 ---~~~~i~~liaeAv~~Vg~~g~-----i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~ 279 (600)
T PLN03167 208 ---NNYEVGNMIAEAMSKVGRKGV-----VTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDK 279 (600)
T ss_pred ---CcHHHHHHHHHHHHHhccCCc-----EEeccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEcc
Confidence 567999999999999975432 223379999997 89999999999863 5889999999999986
Q ss_pred ccccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHH------HcCceEEecCC
Q psy17549 283 PMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFA------DAGVMAIEHAD 356 (418)
Q Consensus 283 ~Le~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~------~~gI~vv~~v~ 356 (418)
.+++++++.++. +.+.+.|+++|+++++|++.++++|. ..+|+++++.+
T Consensus 280 --------------~i~~~~~l~~~l-----------e~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~ 334 (600)
T PLN03167 280 --------------KITNARDLIGIL-----------EDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPG 334 (600)
T ss_pred --------------ccCCHHHHHHHH-----------HHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEccc
Confidence 356666766543 46677899999999999999999998 78899999996
Q ss_pred -----HHHHHHHHHHhCCeecc-----ccCCCCCCCceeeeeEEEEE-----ECc
Q psy17549 357 -----FDGIERLALVTGGEIVS-----TFDNPDQVKLGKCDLIEEVC-----LWT 396 (418)
Q Consensus 357 -----~~~L~ria~~tGa~iv~-----~l~~l~~~~lG~~~~v~~~~-----ig~ 396 (418)
+++|+|||.+|||++++ +++++++++||+|+.|++.+ +|+
T Consensus 335 ~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~ 389 (600)
T PLN03167 335 FGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGD 389 (600)
T ss_pred CCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCC
Confidence 78999999999999999 68899999999999999998 886
No 41
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=2.8e-36 Score=289.92 Aligned_cols=193 Identities=21% Similarity=0.348 Sum_probs=178.2
Q ss_pred chhhHHHHHHHHHHHHHhhc------cCCCc-ceEEEEccCCCcccceeeeeEEEeccCCC-CCcceecCceEEEeeccc
Q psy17549 213 SQHKEYFSKLAVDAVLRLKG------SGNLS-AIQIIKKKGGCLEDSFLDEGFLLDKKIGQ-HQPKRIENAKLLIANTPM 284 (418)
Q Consensus 213 ~~~~~~ls~lvv~Av~~v~~------~~~~~-~I~I~ki~Ggs~~dS~lv~Givl~~~~~~-~~~~~i~n~kIlll~~~L 284 (418)
..|.++|++++++|+..+.+ .+|++ +|+|.|++||+++||++++|+++++++.+ .||++++||||++++++|
T Consensus 17 ~~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~~m~~~i~n~kIlll~~~L 96 (261)
T cd03334 17 ESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQGPL 96 (261)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCccCCcccCCCcEEEEeeee
Confidence 46889999999999998852 35665 59999999999999999999999999875 799999999999999999
Q ss_pred ccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcCceEEecCCHHHHHHHH
Q psy17549 285 DTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLA 364 (418)
Q Consensus 285 e~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~~~~L~ria 364 (418)
++++++. +++++.++.+.|++++++++++|.+.|+|||+|+++|++.+++||.++||++++|+++++|+|||
T Consensus 97 e~~~~~~--------~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~~dl~rIa 168 (261)
T cd03334 97 EYQRVEN--------KLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLERIS 168 (261)
T ss_pred ccccccC--------CHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCHHHHHHHH
Confidence 9998863 36788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeecccc-CCCCCCCceeeeeEEEEEECc-----eeEEEEeee------eEEEeCCC
Q psy17549 365 LVTGGEIVSTF-DNPDQVKLGKCDLIEEVCLWT-----KNVTGPTVS------TYSISGFR 413 (418)
Q Consensus 365 ~~tGa~iv~~l-~~l~~~~lG~~~~v~~~~ig~-----~~~~~~~~~------t~~l~g~~ 413 (418)
++|||++++++ ++++++.+|+|+.|+++++|+ ++|++|++| ||+|||+.
T Consensus 169 ~~tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~~~~TIlLRG~t 229 (261)
T cd03334 169 RCTGADIISSMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKELGCTILLRGGD 229 (261)
T ss_pred HHhCCEEecChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCCceeEEEEECCC
Confidence 99999999994 589999999999999999996 699999864 99999965
No 42
>KOG0357|consensus
Probab=100.00 E-value=4.9e-36 Score=284.01 Aligned_cols=233 Identities=33% Similarity=0.449 Sum_probs=215.2
Q ss_pred Ccchhhccchhh--hhhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHH
Q psy17549 45 LNPVRILKHEAE--EEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAK 122 (418)
Q Consensus 45 ~~~~~~~~~~~~--~~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~ak 122 (418)
..|..+++|..+ ...|.++.++|+.|..++|..+++|+||+|++|+++.+ .|++++|||| .|++++
T Consensus 9 ~~~~iiLrDQd~~~Ri~G~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~p---dgditvtndg---------d~~Iak 76 (400)
T KOG0357|consen 9 GRPFIILRDQERKDRLFGLDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSP---DGDITVTNDG---------VHQIAK 76 (400)
T ss_pred cCceEEeeeccCCchhhHHHHhhhhhHHHHHHHHHHHhhcCccccccccccC---CCCceeeecc---------chHHHH
Confidence 367777877655 45789999999999999999999999999999999999 4999999999 789999
Q ss_pred HHHHhhhhccccccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHH
Q psy17549 123 ILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNI 202 (418)
Q Consensus 123 ll~~~~~~~~~~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~i 202 (418)
++...+..|+.+.|||||.+++|++.+++++.+++.+|+||..|.+||..+...+++.|++.+.+.+
T Consensus 77 Lmv~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e------------- 143 (400)
T KOG0357|consen 77 LIVILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE------------- 143 (400)
T ss_pred HHHHhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc-------------
Confidence 9999999999999999999999999999999999999999999999999999999888766443210
Q ss_pred HHhhccccccchhhHHHHHHHHHHHHHhhccCCCcceEEEEccCCCcccceeeeeEEEeccCCCCCcceecCceEEEeec
Q psy17549 203 ARTTLSSKILSQHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQPKRIENAKLLIANT 282 (418)
Q Consensus 203 a~tsl~sK~~~~~~~~ls~lvv~Av~~v~~~~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~~~~~~i~n~kIlll~~ 282 (418)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcCceEEecCCHHHHHH
Q psy17549 283 PMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIER 362 (418)
Q Consensus 283 ~Le~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~~~~L~r 362 (418)
+.++++++++.|+++++|||++||.|.|+|-+++..++|||...++|-
T Consensus 144 --------------------------------f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEiEl 191 (400)
T KOG0357|consen 144 --------------------------------FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIEL 191 (400)
T ss_pred --------------------------------HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcceEE
Confidence 445788999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeeccccCCCCCCCceeeeeEEEEEECc--eeEEEEeee------eEEEeCCCc
Q psy17549 363 LALVTGGEIVSTFDNPDQVKLGKCDLIEEVCLWT--KNVTGPTVS------TYSISGFRY 414 (418)
Q Consensus 363 ia~~tGa~iv~~l~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~~------t~~l~g~~~ 414 (418)
||.+||++|+++|+++++++||+|+.|+|+++|. +|++.++.| |+.+||++-
T Consensus 192 iAiaT~grIVprF~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~nskaVTifvRg~Nk 251 (400)
T KOG0357|consen 192 IAIATGGRIVPRFSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNSKAVTIFVRGGNK 251 (400)
T ss_pred EEeecCCeeeccHhhhCHhhccccceEEEEecccccceEEEEEecCCCceEEEEEecCcc
Confidence 9999999999999999999999999999999995 689999988 999999764
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.98 E-value=1.7e-31 Score=249.00 Aligned_cols=175 Identities=35% Similarity=0.511 Sum_probs=164.6
Q ss_pred HHHHHHHHhhccccccchhhHHHHHHHHHHHHHhhc---cCCCcceEEEEccCCCcccceeeeeEEEeccCCC-CCccee
Q psy17549 197 EDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRLKG---SGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQ-HQPKRI 272 (418)
Q Consensus 197 ~~L~~ia~tsl~sK~~~~~~~~ls~lvv~Av~~v~~---~~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~-~~~~~i 272 (418)
+.|.++|+|+++||+ ++|.+.+++++++|+..+++ .++.++|+|++++||++++|++++|++|++++.+ .||+++
T Consensus 2 ~~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m~~~~ 80 (209)
T cd03333 2 ELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYMPKRL 80 (209)
T ss_pred hHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChhhceeEeeEEEeccccCCCCCeEc
Confidence 568999999999999 99999999999999999975 3567899999999999999999999999999875 689999
Q ss_pred cCceEEEeecccccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcCceEE
Q psy17549 273 ENAKLLIANTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAI 352 (418)
Q Consensus 273 ~n~kIlll~~~Le~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv 352 (418)
+||||++++++|++ +|+++++|++.+++||.++||+++
T Consensus 81 ~n~~Ill~~~~le~------------------------------------------vii~~~~I~~~al~~l~~~~I~~v 118 (209)
T cd03333 81 ENAKILLLDCPLEY------------------------------------------VVIAEKGIDDLALHYLAKAGIMAV 118 (209)
T ss_pred CCCcEEEEeCCeeE------------------------------------------EEEecCcccHHHHHHHHHCCCEEE
Confidence 99999999999876 999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHhCCeeccccCCCCCCCceeeeeEEEEEECceeEEEEee------eeEEEeCCCc
Q psy17549 353 EHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEVCLWTKNVTGPTV------STYSISGFRY 414 (418)
Q Consensus 353 ~~v~~~~L~ria~~tGa~iv~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~------~t~~l~g~~~ 414 (418)
+++++++|+|||++|||++++++++++++.+|+|+.|++.++|+++|++|++ ||++|||.+.
T Consensus 119 ~~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~tIllrG~t~ 186 (209)
T cd03333 119 RRVKKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGGKAATILLRGATE 186 (209)
T ss_pred EeCCHHHHHHHHHHHCCEEecccccCChhhceeeeEEEEEEECCeEEEEEEcCCCCCEEEEEEECCCH
Confidence 9999999999999999999999999999999999999999999999999984 7999999653
No 44
>KOG0356|consensus
Probab=99.96 E-value=2.6e-28 Score=245.09 Aligned_cols=292 Identities=24% Similarity=0.322 Sum_probs=239.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhcccc----ChHHHHHHHhhhhcc
Q psy17549 57 EEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVD----NPAAKILVDMSKVQD 132 (418)
Q Consensus 57 ~~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~----hP~akll~~~~~~~~ 132 (418)
..+|.++|...++++..+|+++.+|+||+||++++.+. +|.|.|||||.|+.+++++. +-+|+++++++.+.+
T Consensus 19 i~fg~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~---~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~tN 95 (550)
T KOG0356|consen 19 IKFGKDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQS---WGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANNTN 95 (550)
T ss_pred cccCHHHHHHHHhhHHHHHHHhhhhccCCcceEEcccc---cCCCceecCCceeeccccccchhhhhccHHHHHHHhhcc
Confidence 35778899999999999999999999999999999998 79999999999999999985 558999999999999
Q ss_pred ccccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHhhcccccc
Q psy17549 133 DEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKIL 212 (418)
Q Consensus 133 ~~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia~tsl~sK~~ 212 (418)
+..||||||+++|+.++.+++.+-+.+|.+|.++.+|...|.+...+.|+++++++... +++.++|. + +
T Consensus 96 ~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~-----eeIaqVAt--i----S 164 (550)
T KOG0356|consen 96 EEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTP-----EEIAQVAT--I----S 164 (550)
T ss_pred CccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCH-----HHHHHHHh--h----h
Confidence 99999999999999999999999999999999999999999999999999999999875 78888885 3 3
Q ss_pred chhhHHHHHHHHHHHHHhhccCCCcceEEEEccCCCcccc-eeeeeEEEeccCCC--------CCcceecCceEEEeecc
Q psy17549 213 SQHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKKGGCLEDS-FLDEGFLLDKKIGQ--------HQPKRIENAKLLIANTP 283 (418)
Q Consensus 213 ~~~~~~ls~lvv~Av~~v~~~~~~~~I~I~ki~Ggs~~dS-~lv~Givl~~~~~~--------~~~~~i~n~kIlll~~~ 283 (418)
++++.++.+++.+|+.++++++. |.+. .|.++.|. ++++|+-|++++.. .+..+++||++++.+.
T Consensus 165 AngD~~ig~li~~a~~kvG~~GV---Itv~--~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~k- 238 (550)
T KOG0356|consen 165 ANGDKEIGNLISDAMKKVGRKGV---ITVK--DGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEK- 238 (550)
T ss_pred cCCcHHHHHHHHHHHHHhCcCCe---EEee--cCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhh-
Confidence 56789999999999999976543 2233 67776654 78999999999842 2345788898887753
Q ss_pred cccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHc------CceEEecCC-
Q psy17549 284 MDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADA------GVMAIEHAD- 356 (418)
Q Consensus 284 Le~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~------gI~vv~~v~- 356 (418)
++++++++.+..+.-. +....+++....|+..++..|--+ .+.+++..+
T Consensus 239 -------------ki~~v~~ivp~LE~A~-----------~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgf 294 (550)
T KOG0356|consen 239 -------------KISSVQSIVPALELAL-----------AKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGF 294 (550)
T ss_pred -------------hhhHHHHHhHHHHHhh-----------hccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCC
Confidence 4677777665433211 223357788889999888766443 234444433
Q ss_pred ----HHHHHHHHHHhCCeeccc------cCCCCCCCceeeeeEEEE
Q psy17549 357 ----FDGIERLALVTGGEIVST------FDNPDQVKLGKCDLIEEV 392 (418)
Q Consensus 357 ----~~~L~ria~~tGa~iv~~------l~~l~~~~lG~~~~v~~~ 392 (418)
++.+.+++.+|||+++.. +++...+++|.|+.+.+.
T Consensus 295 Gdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvt 340 (550)
T KOG0356|consen 295 GDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVT 340 (550)
T ss_pred cchHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCcceeEEEe
Confidence 456999999999999873 556777899999977665
No 45
>KOG0230|consensus
Probab=99.82 E-value=4.5e-20 Score=202.25 Aligned_cols=193 Identities=21% Similarity=0.310 Sum_probs=172.1
Q ss_pred chhhHHHHHHHHHHHHHhhcc------CCC-cceEEEEccCCCcccceeeeeEEEeccCCC-CCcceecCceEEEeeccc
Q psy17549 213 SQHKEYFSKLAVDAVLRLKGS------GNL-SAIQIIKKKGGCLEDSFLDEGFLLDKKIGQ-HQPKRIENAKLLIANTPM 284 (418)
Q Consensus 213 ~~~~~~ls~lvv~Av~~v~~~------~~~-~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~-~~~~~i~n~kIlll~~~L 284 (418)
..|.+.+..|+++|+..+.++ .|+ ++|+|.++.||+..+|+++.|+|+.+..++ .|..+.++|||+++.++|
T Consensus 331 ~~W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~l 410 (1598)
T KOG0230|consen 331 QEWLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPL 410 (1598)
T ss_pred hhHHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEecch
Confidence 368889999999999988653 222 799999999999999999999999999876 799999999999999999
Q ss_pred ccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcCceEEecCCHHHHHHHH
Q psy17549 285 DTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLA 364 (418)
Q Consensus 285 e~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~~~~L~ria 364 (418)
+|++... .+.+.+. +..+|.++++..+.+|....+|++++.++|++.|+++|...||.++=++++.-|+||+
T Consensus 411 eyqrisn-----~lsS~et---vlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRIs 482 (1598)
T KOG0230|consen 411 EYQRISN-----QLSSIET---VLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERIS 482 (1598)
T ss_pred hhhhhhc-----cccchHH---HHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHHH
Confidence 9998764 2455444 3445899999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeeccccCCCCCCCceeeeeEEEEEEC-----ceeEEEEe------eeeEEEeCCC
Q psy17549 365 LVTGGEIVSTFDNPDQVKLGKCDLIEEVCLW-----TKNVTGPT------VSTYSISGFR 413 (418)
Q Consensus 365 ~~tGa~iv~~l~~l~~~~lG~~~~v~~~~ig-----~~~~~~~~------~~t~~l~g~~ 413 (418)
++|||.|+++++.++...+|+|+.|++..+- .+.++||+ |||++|||..
T Consensus 483 R~tga~I~~siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~lG~TiLLrG~~ 542 (1598)
T KOG0230|consen 483 RCTGADIVPSVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPLGCTILLRGDS 542 (1598)
T ss_pred HHhcCceecchhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCCCCceEEecCCC
Confidence 9999999999999999999999999998885 56799998 5799999964
No 46
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=69.00 E-value=11 Score=29.63 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=31.5
Q ss_pred HHHHHHccCceEEEeccccccchHHHHHHcCceEEecC
Q psy17549 318 KVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHA 355 (418)
Q Consensus 318 ~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v 355 (418)
..+.+.+.++++|+|. .|++.+...|.++||-++...
T Consensus 45 ~~~~l~~~~v~~li~~-~iG~~~~~~L~~~gI~v~~~~ 81 (94)
T PF02579_consen 45 IAKFLAEEGVDVLICG-GIGEGAFRALKEAGIKVYQGA 81 (94)
T ss_dssp HHHHHHHTTESEEEES-CSCHHHHHHHHHTTSEEEEST
T ss_pred HHHHHHHcCCCEEEEe-CCCHHHHHHHHHCCCEEEEcC
Confidence 4455667899999998 689999999999999999873
No 47
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=68.63 E-value=13 Score=29.73 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=35.3
Q ss_pred HHHHHHHccCceEEEeccccccchHHHHHHcCceEEecCCHHHHHH
Q psy17549 317 DKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIER 362 (418)
Q Consensus 317 ~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~~~~L~r 362 (418)
..++.|.+.++++|++. ++++.+.+.|.++||.++.... .+++.
T Consensus 54 ~~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~-~~i~~ 97 (103)
T cd00851 54 KAAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE-GTVEE 97 (103)
T ss_pred HHHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC-CCHHH
Confidence 35566677999999997 6999999999999999987665 34443
No 48
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=67.67 E-value=16 Score=30.97 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=35.4
Q ss_pred HHHHHHHccCceEEEeccccccchHHHHHHcCceEEecCCHH
Q psy17549 317 DKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFD 358 (418)
Q Consensus 317 ~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~~~ 358 (418)
...+.|++.|+++|++. .+++-+..+|.++||-+..-.+.+
T Consensus 56 ~~a~~l~~~gvdvvi~~-~iG~~a~~~l~~~GIkv~~~~~~~ 96 (121)
T COG1433 56 RIAELLVDEGVDVVIAS-NIGPNAYNALKAAGIKVYVAPGGT 96 (121)
T ss_pred HHHHHHHHcCCCEEEEC-ccCHHHHHHHHHcCcEEEecCCCC
Confidence 45778899999999998 789999999999999988876633
No 49
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=61.11 E-value=25 Score=27.93 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=32.5
Q ss_pred HHHHHHccCceEEEeccccccchHHHHHHcCceEEecCC
Q psy17549 318 KVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHAD 356 (418)
Q Consensus 318 ~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~ 356 (418)
..+.+...++++|+|. ++++.+...|.++||.++...+
T Consensus 53 ~~~~l~~~~v~~vi~~-~iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 53 AARLLALEGCDAVLVG-GIGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHHCCCcEEEEc-ccCccHHHHHHHcCCEEEEcCC
Confidence 4455667899999999 5999999999999999987765
No 50
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=39.36 E-value=1e+02 Score=24.89 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=27.1
Q ss_pred cCceEEEeccccccchHHHHHHcCceEEecCC
Q psy17549 325 HNANVFINRQLIYNYPEQLFADAGVMAIEHAD 356 (418)
Q Consensus 325 ~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~ 356 (418)
.++++|++. ++++.+...|.++||-+++.-.
T Consensus 64 ~~~~vvi~~-~iG~~a~~~L~~~GI~v~~~~~ 94 (106)
T cd00852 64 SDCDAVLCA-KIGDEPKEKLEEAGIEVIEAYA 94 (106)
T ss_pred cCCcEEeeh-hhCccHHHHHHHCCCEEEEecC
Confidence 689999988 7899999999999999986544
No 51
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=37.76 E-value=1.3e+02 Score=25.11 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=35.9
Q ss_pred cCceEEEeccccccchHHHHHHcCceEEecCC----HHHHHHHHHHhCCee
Q psy17549 325 HNANVFINRQLIYNYPEQLFADAGVMAIEHAD----FDGIERLALVTGGEI 371 (418)
Q Consensus 325 ~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~----~~~L~ria~~tGa~i 371 (418)
.++++|+|. +|++.+...|.+.||.+++.-. .+-|+++.+..-..+
T Consensus 62 ~~c~vvi~~-~IG~~a~~~L~~~gI~~~~~~~~~~v~eal~~l~~~~~~~~ 111 (119)
T TIGR02663 62 KDCAILYCL-AIGGPAAAKVVAAKIHPIKVNEPESISELLERLQKMLKGNP 111 (119)
T ss_pred CCCcEEEEh-hcCccHHHHHHHcCCeeEecCCCccHHHHHHHHHHHHcCCC
Confidence 589999988 7999999999999999997432 345777777764443
No 52
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=35.32 E-value=1.5e+02 Score=23.53 Aligned_cols=51 Identities=8% Similarity=0.064 Sum_probs=38.9
Q ss_pred HHHHHHHHHccCceEEEeccccccchH----HHHHHcCceEEecCCHHHHHHHHH
Q psy17549 315 MKDKVEKILKHNANVFINRQLIYNYPE----QLFADAGVMAIEHADFDGIERLAL 365 (418)
Q Consensus 315 l~~~v~~I~~~gv~vVl~~~~I~d~a~----~~l~~~gI~vv~~v~~~~L~ria~ 365 (418)
+++..+.|.+-.+.+|+..+++++... ..+.++||.++---++.+|-+.|-
T Consensus 18 ~kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~~~LGkAcg 72 (84)
T PRK13600 18 LKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHVG 72 (84)
T ss_pred HHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhC
Confidence 456677787778889999999888544 477889999888777776665543
No 53
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=34.50 E-value=1.1e+02 Score=24.56 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=27.3
Q ss_pred cCceEEEeccccccchHHHHHHcCceEEecCC
Q psy17549 325 HNANVFINRQLIYNYPEQLFADAGVMAIEHAD 356 (418)
Q Consensus 325 ~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~ 356 (418)
.++++|+|. +|++.+...|.++||.++.-..
T Consensus 60 ~~~~vvi~~-~iG~~a~~~L~~~GI~v~~~~~ 90 (102)
T cd00853 60 EDCAILYCA-AIGGPAAARLVRAGIHPIKVPE 90 (102)
T ss_pred CCCcEEEEh-hcChhHHHHHHHcCCEEEEcCC
Confidence 589998887 7899999999999999987654
No 54
>PF12846 AAA_10: AAA-like domain
Probab=33.36 E-value=98 Score=29.29 Aligned_cols=58 Identities=16% Similarity=0.143 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHccCceEEEeccccccch-----HHHHHHcCceEEecCCHHHHHHHHHHhCCe
Q psy17549 313 EKMKDKVEKILKHNANVFINRQLIYNYP-----EQLFADAGVMAIEHADFDGIERLALVTGGE 370 (418)
Q Consensus 313 ~~l~~~v~~I~~~gv~vVl~~~~I~d~a-----~~~l~~~gI~vv~~v~~~~L~ria~~tGa~ 370 (418)
+.+.+.++...+.|+.+++....+.+.. ...++..+..++-+++..+.+.+++..|.+
T Consensus 240 ~~~~~~~~~~Rk~g~~~~l~tQ~~~~l~~~~~~~~i~~n~~~~i~~~~~~~~~~~l~~~~gl~ 302 (304)
T PF12846_consen 240 EFLDELLREGRKYGVGLILATQSPSDLPKSPIEDAILANCNTKIIFRLEDSDDAELAELFGLT 302 (304)
T ss_pred hhhhHHHHHHHhcCCEEEEeeCCHHHHhccchHHHHHHhCCcEEEecCChHHHHHHHHHcCcC
Confidence 3456677888899999999999988888 789999999999999999888899988865
No 55
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=29.88 E-value=2e+02 Score=22.46 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=37.0
Q ss_pred HHHHHHHccCceEEEeccccccch----HHHHHHcCceEEecCCHHHHHHHHHHhCCe
Q psy17549 317 DKVEKILKHNANVFINRQLIYNYP----EQLFADAGVMAIEHADFDGIERLALVTGGE 370 (418)
Q Consensus 317 ~~v~~I~~~gv~vVl~~~~I~d~a----~~~l~~~gI~vv~~v~~~~L~ria~~tGa~ 370 (418)
...+.|.+-.+.+|+...+.++.. .+++.+++|.++..-++. .|.+++|-.
T Consensus 18 ~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~~---eLG~a~G~~ 72 (82)
T PRK13602 18 QTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSMK---KLGKACGIE 72 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCHH---HHHHHHCCC
Confidence 456677777889999999888854 356788999987766554 566667654
No 56
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=29.24 E-value=1.4e+02 Score=26.32 Aligned_cols=52 Identities=29% Similarity=0.362 Sum_probs=35.4
Q ss_pred HHHHHccCceEEEeccccccchHHHHHHcCceEEe--cCC-H----HHHHHHHHHhCCe
Q psy17549 319 VEKILKHNANVFINRQLIYNYPEQLFADAGVMAIE--HAD-F----DGIERLALVTGGE 370 (418)
Q Consensus 319 v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~--~v~-~----~~L~ria~~tGa~ 370 (418)
++.|.+.+++||+......+...+.|.+.||.++- ... . +.++.+++++|-.
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~~ 111 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGAE 111 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCCh
Confidence 45677889999988655444466788899985432 221 2 3578888888864
No 57
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=28.34 E-value=1.3e+02 Score=27.65 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHccCceEEEeccccccchHHHHHHcC----ceEEecCCHH
Q psy17549 313 EKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAG----VMAIEHADFD 358 (418)
Q Consensus 313 ~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~g----I~vv~~v~~~ 358 (418)
..++++++.+.+.++.+++.+.|.++.....|.... |.++..++.+
T Consensus 76 p~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~ 125 (220)
T COG4359 76 PGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNN 125 (220)
T ss_pred ccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecC
Confidence 358889999999999999999998887776666554 7777665544
No 58
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=28.16 E-value=1.5e+02 Score=23.22 Aligned_cols=53 Identities=13% Similarity=0.108 Sum_probs=38.8
Q ss_pred HHHHHHHHHccCceEEEeccccccc-----hHHHHHHcCceEEecCCHHHHHHHHHHhCCe
Q psy17549 315 MKDKVEKILKHNANVFINRQLIYNY-----PEQLFADAGVMAIEHADFDGIERLALVTGGE 370 (418)
Q Consensus 315 l~~~v~~I~~~gv~vVl~~~~I~d~-----a~~~l~~~gI~vv~~v~~~~L~ria~~tGa~ 370 (418)
+.+..+.|....+.+|+...++++. ...++.+++|.++..-++. +|.+++|-.
T Consensus 20 ~~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~s~~---eLG~~~g~~ 77 (95)
T PF01248_consen 20 IKEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVPSKE---ELGRACGKK 77 (95)
T ss_dssp HHHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEESHHH---HHHHHTTSS
T ss_pred hHHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEECCHH---HHHHHHCCC
Confidence 4566777777788899999888873 3357789999998777555 556666654
No 59
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=26.40 E-value=2.4e+02 Score=22.12 Aligned_cols=50 Identities=10% Similarity=0.084 Sum_probs=35.4
Q ss_pred HHHHHHccCceEEEeccccccchH----HHHHHcCceEEecCCHHHHHHHHHHhCCe
Q psy17549 318 KVEKILKHNANVFINRQLIYNYPE----QLFADAGVMAIEHADFDGIERLALVTGGE 370 (418)
Q Consensus 318 ~v~~I~~~gv~vVl~~~~I~d~a~----~~l~~~gI~vv~~v~~~~L~ria~~tGa~ 370 (418)
.++.|.+-.+.+|+...+.++... +++..++|.+...-++. .|.+++|-.
T Consensus 16 vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t~~---eLG~A~G~~ 69 (82)
T PRK13601 16 TLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTMK---ELGVMCGID 69 (82)
T ss_pred HHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCCHH---HHHHHHCCc
Confidence 456677777899999988887444 45678899986555554 566666654
No 60
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=25.70 E-value=2.4e+02 Score=22.76 Aligned_cols=50 Identities=16% Similarity=0.050 Sum_probs=36.2
Q ss_pred HHHHHHHccCceEEEecccccc----chHHHHHHcCceEEecC-CHHHHHHHHHHhCC
Q psy17549 317 DKVEKILKHNANVFINRQLIYN----YPEQLFADAGVMAIEHA-DFDGIERLALVTGG 369 (418)
Q Consensus 317 ~~v~~I~~~gv~vVl~~~~I~d----~a~~~l~~~gI~vv~~v-~~~~L~ria~~tGa 369 (418)
...+.|.+..+.+|+...+.++ ...+++.+++|.++... +++ .|.+++|-
T Consensus 23 ~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk~---eLG~a~Gk 77 (99)
T PRK01018 23 RTIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSV---ELGTLCGK 77 (99)
T ss_pred HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCHH---HHHHHhCC
Confidence 4566777777889988888776 34457788999987764 555 56677774
No 61
>PRK06683 hypothetical protein; Provisional
Probab=24.85 E-value=2.6e+02 Score=21.86 Aligned_cols=50 Identities=10% Similarity=0.001 Sum_probs=36.5
Q ss_pred HHHHHHccCceEEEeccccccchH----HHHHHcCceEEecCCHHHHHHHHHHhCCe
Q psy17549 318 KVEKILKHNANVFINRQLIYNYPE----QLFADAGVMAIEHADFDGIERLALVTGGE 370 (418)
Q Consensus 318 ~v~~I~~~gv~vVl~~~~I~d~a~----~~l~~~gI~vv~~v~~~~L~ria~~tGa~ 370 (418)
..+.|.+-.+.+|+...+.++... +++..++|.++..-+. +.|.+++|-.
T Consensus 19 v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t~---~eLG~A~G~~ 72 (82)
T PRK06683 19 TLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESV---RKLGKVAGIQ 72 (82)
T ss_pred HHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECCH---HHHHHHhCCc
Confidence 456677777899999988888554 4578889998766644 5667777764
No 62
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.60 E-value=1.8e+02 Score=26.85 Aligned_cols=52 Identities=17% Similarity=0.263 Sum_probs=36.6
Q ss_pred HHHHHccCceEEEeccccccc-hHHHHHHcCceEEecC--C----HHHHHHHHHHhCCe
Q psy17549 319 VEKILKHNANVFINRQLIYNY-PEQLFADAGVMAIEHA--D----FDGIERLALVTGGE 370 (418)
Q Consensus 319 v~~I~~~gv~vVl~~~~I~d~-a~~~l~~~gI~vv~~v--~----~~~L~ria~~tGa~ 370 (418)
++.|.+.++++|+....-++. ..+.|.+.|+.++-.- . .+.++.+++++|-.
T Consensus 50 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 50 LERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 466788899999987544443 3778888888654421 2 24588899999876
No 63
>PRK07714 hypothetical protein; Provisional
Probab=24.49 E-value=2.6e+02 Score=22.53 Aligned_cols=51 Identities=8% Similarity=-0.012 Sum_probs=36.1
Q ss_pred HHHHHHHccCceEEEeccccccch----HHHHHHcCceEEecCCHHHHHHHHHHhCCe
Q psy17549 317 DKVEKILKHNANVFINRQLIYNYP----EQLFADAGVMAIEHADFDGIERLALVTGGE 370 (418)
Q Consensus 317 ~~v~~I~~~gv~vVl~~~~I~d~a----~~~l~~~gI~vv~~v~~~~L~ria~~tGa~ 370 (418)
...+.+.+-.+.+|+...+.++.. .+++..++|.++...+++ .+..++|-.
T Consensus 25 ~v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk~---eLG~a~Gk~ 79 (100)
T PRK07714 25 LVLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENRQ---QLGHAIGKD 79 (100)
T ss_pred HHHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCHH---HHHHHhCCC
Confidence 445666666788999998888743 345677899988776665 566677754
No 64
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=23.91 E-value=1.7e+02 Score=29.46 Aligned_cols=53 Identities=11% Similarity=0.256 Sum_probs=38.5
Q ss_pred HHHHHHccCceEEEeccccccchHHHHHHcCceEEecC---CH----HHHHHHHHHhCCe
Q psy17549 318 KVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHA---DF----DGIERLALVTGGE 370 (418)
Q Consensus 318 ~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v---~~----~~L~ria~~tGa~ 370 (418)
-+++|.+.+++||+....-.+...+-|.+.||.++..- +. +.++.+++++|-.
T Consensus 111 n~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~e 170 (359)
T PRK09534 111 NVEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGNC 170 (359)
T ss_pred CHHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 36788899999999865444556778899999876532 21 4567888888864
No 65
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=23.74 E-value=1.7e+02 Score=28.21 Aligned_cols=53 Identities=23% Similarity=0.157 Sum_probs=38.7
Q ss_pred HHHHHccCceEEEeccccccchHHHHHHcCceEEe--cCC----HHHHHHHHHHhCCee
Q psy17549 319 VEKILKHNANVFINRQLIYNYPEQLFADAGVMAIE--HAD----FDGIERLALVTGGEI 371 (418)
Q Consensus 319 v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~--~v~----~~~L~ria~~tGa~i 371 (418)
++.|.+.++++|+.....++...+.|.+.||.++- .-+ .+.++.+++++|..-
T Consensus 84 ~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~~~ 142 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGREE 142 (289)
T ss_pred HHHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCCHH
Confidence 46688899999998877777777888888986643 112 245888999988653
No 66
>PRK07283 hypothetical protein; Provisional
Probab=22.91 E-value=2.8e+02 Score=22.35 Aligned_cols=50 Identities=12% Similarity=-0.136 Sum_probs=36.6
Q ss_pred HHHHHHHccCceEEEeccccccchH----HHHHHcCceEEecCCHHHHHHHHHHhCC
Q psy17549 317 DKVEKILKHNANVFINRQLIYNYPE----QLFADAGVMAIEHADFDGIERLALVTGG 369 (418)
Q Consensus 317 ~~v~~I~~~gv~vVl~~~~I~d~a~----~~l~~~gI~vv~~v~~~~L~ria~~tGa 369 (418)
...+.|.+-.+.+|+...+.++... +.+..++|.++...+.+ .|.+++|-
T Consensus 25 ~v~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t~~---eLG~a~Gk 78 (98)
T PRK07283 25 LVVKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFSTL---ELSAAVGK 78 (98)
T ss_pred HHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHH---HHHHHhCC
Confidence 3456677777889999988888666 56667799988776554 56777774
No 67
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.18 E-value=4e+02 Score=24.83 Aligned_cols=57 Identities=7% Similarity=0.048 Sum_probs=46.0
Q ss_pred HHHHHHHccCceEEEeccccccchHHHHHHcCceEE-ecCCHHHHHHHHHHhCCeecccc
Q psy17549 317 DKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAI-EHADFDGIERLALVTGGEIVSTF 375 (418)
Q Consensus 317 ~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv-~~v~~~~L~ria~~tGa~iv~~l 375 (418)
+.++...+.|++.+++- +.++...+++.++++..+ ......|+.. +.-.|+.++-=+
T Consensus 78 ~~a~~a~~aGA~FivsP-~~~~~vi~~a~~~~i~~iPG~~TptEi~~-a~~~Ga~~vKlF 135 (212)
T PRK05718 78 EQLAQAIEAGAQFIVSP-GLTPPLLKAAQEGPIPLIPGVSTPSELML-GMELGLRTFKFF 135 (212)
T ss_pred HHHHHHHHcCCCEEECC-CCCHHHHHHHHHcCCCEeCCCCCHHHHHH-HHHCCCCEEEEc
Confidence 34667789999998877 678889999999999999 7788888666 677899887543
No 68
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=20.83 E-value=3.4e+02 Score=22.65 Aligned_cols=52 Identities=8% Similarity=0.068 Sum_probs=37.0
Q ss_pred HHHHHHHHHccCceEEEeccccccc-----hHHHHHHcCceEEecCCHHHHHHHHHHhCC
Q psy17549 315 MKDKVEKILKHNANVFINRQLIYNY-----PEQLFADAGVMAIEHADFDGIERLALVTGG 369 (418)
Q Consensus 315 l~~~v~~I~~~gv~vVl~~~~I~d~-----a~~~l~~~gI~vv~~v~~~~L~ria~~tGa 369 (418)
.....+.|..-.+.+|+...++++. ..+++.+++|..+..-++++| .+++|-
T Consensus 31 ~~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk~eL---G~a~Gk 87 (117)
T TIGR03677 31 TNEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKKEDL---GAAAGL 87 (117)
T ss_pred HHHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCHHHH---HHHhCC
Confidence 4455667777778999999999773 234678899998877777655 555554
No 69
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=20.26 E-value=3.1e+02 Score=22.61 Aligned_cols=53 Identities=11% Similarity=-0.007 Sum_probs=38.1
Q ss_pred HHHHHHHHHccCceEEEeccccccc----hHHHHHHcCceEEec-CCHHHHHHHHHHhCCe
Q psy17549 315 MKDKVEKILKHNANVFINRQLIYNY----PEQLFADAGVMAIEH-ADFDGIERLALVTGGE 370 (418)
Q Consensus 315 l~~~v~~I~~~gv~vVl~~~~I~d~----a~~~l~~~gI~vv~~-v~~~~L~ria~~tGa~ 370 (418)
.+...+.|..-.+.+|+...+.++. ..+++..++|.++.. -+. +.|.+++|-.
T Consensus 30 ~~~vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~---~eLG~A~Gk~ 87 (108)
T PTZ00106 30 TKSTLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNN---NDLGTACGRH 87 (108)
T ss_pred HHHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCH---HHHHHHhCCc
Confidence 3445677777788999999888875 456778889998764 444 4566777743
Done!