RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17549
(418 letters)
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, beta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 517
Score = 659 bits (1701), Expect = 0.0
Identities = 269/343 (78%), Positives = 309/343 (90%), Gaps = 1/343 (0%)
Query: 50 ILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGAT 109
ILK A+EEK E AR+SSF+GAIAIGDLVK+TLGPKGMDKIL S+GR SG V +TNDGAT
Sbjct: 1 ILKDGAQEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGR-SGGVTVTNDGAT 59
Query: 110 ILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAG 169
ILKS+GVDNPAAK+LVD+SKVQDDEVGDGTTSVTVLA+ELL+ AEKL+ Q++HPQTII G
Sbjct: 60 ILKSIGVDNPAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEG 119
Query: 170 WRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLR 229
+R AT AR+AL +++D+ + E FREDLLNIARTTLSSKIL+Q KE+F++LAVDAVLR
Sbjct: 120 YRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAVLR 179
Query: 230 LKGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQPKRIENAKLLIANTPMDTDKI 289
LKGSGNL AIQIIKK GG L+DS+LDEGFLLDKKIG +QPKRIENAK+LIANTPMDTDKI
Sbjct: 180 LKGSGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGVNQPKRIENAKILIANTPMDTDKI 239
Query: 290 KVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGV 349
K+FG++VRVDS AK+AE+E AEKEKMK+KVEKILKH N FINRQLIYNYPEQLFADAG+
Sbjct: 240 KIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGI 299
Query: 350 MAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEV 392
MAIEHADFDG+ERLALVTGGEI STFD+P+ VKLG C LIEE+
Sbjct: 300 MAIEHADFDGVERLALVTGGEIASTFDHPELVKLGTCKLIEEI 342
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional.
Length = 533
Score = 635 bits (1640), Expect = 0.0
Identities = 251/353 (71%), Positives = 301/353 (85%), Gaps = 2/353 (0%)
Query: 42 QVSLNPVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSM--GRNSG 99
++ P ++LK A+EEK E AR+ SF+GAIA+ DLVK+TLGPKGMDKIL M G SG
Sbjct: 2 IMANVPPQVLKQGAQEEKGETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSG 61
Query: 100 QVEITNDGATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQ 159
V +TNDGATILKSV +DNPAAKILVD+SK QD+EVGDGTTSV VLA ELL+ AEKL+DQ
Sbjct: 62 NVTVTNDGATILKSVWLDNPAAKILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQ 121
Query: 160 RLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYF 219
++HPQTII GWR A D+ARKAL E + D+G + EKF+EDLLNIARTTLSSK+L+ K++F
Sbjct: 122 KIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTVEKDHF 181
Query: 220 SKLAVDAVLRLKGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQPKRIENAKLLI 279
+KLAVDAVLRLKGSGNL IQIIKK GG L DS+L++GF+L+KKIG QPKR+EN K+L+
Sbjct: 182 AKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGVGQPKRLENCKILV 241
Query: 280 ANTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNY 339
ANTPMDTDKIK++G++V+VDSM K+AE+E AEKEKMK+KV+KIL H NVFINRQLIYNY
Sbjct: 242 ANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNY 301
Query: 340 PEQLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEV 392
PEQLFA+AG+MAIEHADFDG+ERLA G EIVSTFD P++VKLG CDLIEE+
Sbjct: 302 PEQLFAEAGIMAIEHADFDGMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEI 354
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
beta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 518
Score = 587 bits (1514), Expect = 0.0
Identities = 259/346 (74%), Positives = 306/346 (88%), Gaps = 2/346 (0%)
Query: 49 RILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGA 108
+I K +A EE++E AR+SSF+GAIA+GDLVKSTLGPKGMDKIL S N+ + +TNDGA
Sbjct: 1 QIFKDQATEERAENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSASSNT--IMVTNDGA 58
Query: 109 TILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIA 168
TILKS+G+DNPAAK+LV++SKVQDDEVGDGTTSVTVLA+ELL+ AEKLI+Q++HPQTII
Sbjct: 59 TILKSIGLDNPAAKVLVNISKVQDDEVGDGTTSVTVLAAELLREAEKLINQKIHPQTIIE 118
Query: 169 GWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVL 228
G+R AT A AL ++++DN + KFREDL+NIARTTLSSKILSQHK++F++LAVDAVL
Sbjct: 119 GYRLATKAALDALTKSAVDNSSDKTKFREDLINIARTTLSSKILSQHKDHFAQLAVDAVL 178
Query: 229 RLKGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQPKRIENAKLLIANTPMDTDK 288
RLKGS NL AIQIIK GG L DSFLDEGF+L KKIG +QPKRIENAK+LIANT MDTDK
Sbjct: 179 RLKGSTNLEAIQIIKILGGKLSDSFLDEGFILAKKIGVNQPKRIENAKILIANTTMDTDK 238
Query: 289 IKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAG 348
+K+FGSRVRVDS AK+AELE AE+EKMK+KVEKILKH N FINRQLIYNYPEQLFADAG
Sbjct: 239 VKIFGSRVRVDSTAKLAELEKAEREKMKEKVEKILKHGINCFINRQLIYNYPEQLFADAG 298
Query: 349 VMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEVCL 394
+M+IEHADF+G+ERLALVTGGEIVSTFD+P+ VKLG CDLIEE+ +
Sbjct: 299 IMSIEHADFEGVERLALVTGGEIVSTFDHPELVKLGSCDLIEEIMI 344
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type
II. Chaperonins are involved in productive folding of
proteins. They share a common general morphology, a
double toroid of 2 stacked rings, each composed of 7-9
subunits. There are 2 main chaperonin groups. The
symmetry of type I is seven-fold and they are found in
eubacteria (GroEL) and in organelles of eubacterial
descent (hsp60 and RBP). The symmetry of type II is
eight- or nine-fold and they are found in archea
(thermosome), thermophilic bacteria (TF55) and in the
eukaryotic cytosol (CTT). Their common function is to
sequester nonnative proteins inside their central cavity
and promote folding by using energy derived from ATP
hydrolysis.
Length = 464
Score = 339 bits (871), Expect = e-113
Identities = 131/342 (38%), Positives = 186/342 (54%), Gaps = 52/342 (15%)
Query: 55 AEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSV 114
E E E AR+S+ A A+ D VK+TLGPKGMDK+LV + G ITNDGATILK +
Sbjct: 1 KEREFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVD---SLGDPTITNDGATILKEI 57
Query: 115 GVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRAT 174
V++PAAK+LV+++K QDDEVGDGTT+V VLA ELLK AEKL+ +HP II G+ +A
Sbjct: 58 EVEHPAAKLLVEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAV 117
Query: 175 DIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRLKGSG 234
+ A + L+E ++ + RE+LL +A T+L+SK++S ++ +L VDAVL++
Sbjct: 118 EKALEILKEIAVP---IDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKEN 174
Query: 235 ---NLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQ-PKRIENAKLLIANTPMDTDKIK 290
+L I++ KKKGG LEDS L G + DK PKR+ENAK+L+ + ++
Sbjct: 175 GDVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEY---- 230
Query: 291 VFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVM 350
V I + I + A G+M
Sbjct: 231 --------------------------------------VVIAEKGIDDEALHYLAKLGIM 252
Query: 351 AIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEV 392
A+ + +ER+A TG IVS ++ LG L+EE
Sbjct: 253 AVRRVRKEDLERIAKATGATIVSRLEDLTPEDLGTAGLVEET 294
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. This family
includes members from the HSP60 chaperone family and the
TCP-1 (T-complex protein) family.
Length = 481
Score = 302 bits (775), Expect = 2e-98
Identities = 135/328 (41%), Positives = 197/328 (60%), Gaps = 12/328 (3%)
Query: 74 IGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSKVQDD 133
+ D VK+TLGPKG +K+LV+ + G++ ITNDGATILK + + +PAAK+LV+ +K QD+
Sbjct: 1 LADAVKTTLGPKGRNKMLVN---HGGKITITNDGATILKEIEIQHPAAKLLVEAAKSQDE 57
Query: 134 EVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSE 193
EVGDGTT+ VLA ELL+ AEKLI+ +HP II G+ A +IA KAL E SI
Sbjct: 58 EVGDGTTTAVVLAGELLEEAEKLIEAGIHPTDIIRGYELALEIALKALEELSIP----VS 113
Query: 194 KFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKKGGCLEDSF 253
EDLLN+ART+L+SKI S+ E KL VDAVL + ++ I +IK +GG LEDS
Sbjct: 114 DDDEDLLNVARTSLNSKISSRESELLGKLVVDAVLLIIEKFDVGNIGVIKIEGGSLEDSE 173
Query: 254 LDEGFLLDKKI-GQHQPKRIENAKLLIANTPMDTDKIKVFGSRVRVDSMAKIAELELAEK 312
L EG +LDK PKR+EN K+L+ + P++ +K + + L AE+
Sbjct: 174 LIEGIVLDKGYLSPDMPKRLENPKILLLDCPLEYEKTEKVIISTAEELE----RLLEAEE 229
Query: 313 EKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEIV 372
+++ +EKI+ N+ I ++ I + A G++A+ + +ERLA TG +V
Sbjct: 230 KQLLPLLEKIVDAGVNLVIIQKGIDDLALHFLAKNGILALRRVKKEDLERLAKATGATVV 289
Query: 373 STFDNPDQVKLGKCDLIEEVCLWTKNVT 400
S+ D+ + +LG +EE + T
Sbjct: 290 SSLDDLEPDELGSAGKVEEREIGEDKTT 317
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational
modification, protein turnover, chaperones].
Length = 524
Score = 272 bits (698), Expect = 1e-86
Identities = 122/348 (35%), Positives = 187/348 (53%), Gaps = 23/348 (6%)
Query: 55 AEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSV 114
E + E AR S+ A A+ D VK+TLGPKG +K+LV G G + ITNDG TILK +
Sbjct: 4 KERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSG---GDITITNDGVTILKEI 60
Query: 115 GVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRAT 174
+++P AK+LV+++K QDDE GDGTT+ VLA LLK AEKLI +HP I G+R A
Sbjct: 61 ELEHPGAKLLVEVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAV 120
Query: 175 DIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRL-KGS 233
+ A + L+E + + E+ + IA T+++SK + E +L V+AV ++ K
Sbjct: 121 EKAVEELKEIAKPVSDSEEELK-----IAITSVASKSANSD-EEIGELVVEAVEKVGKEQ 174
Query: 234 GNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQP---KRIENAKLLIANTPMDTDKIK 290
+L I I+K+ GG + + EG + DK KR+EN K+L+ + ++ K +
Sbjct: 175 SDLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKKPE 234
Query: 291 VFGSRVRVDS---MAKIAELELAEKEKMKDKVEKILKHNAN-VFINRQLIYNYPEQLFAD 346
+ + + S + IAE E E E + V IL+ AN V + I + + D
Sbjct: 235 LPLE-IVISSGKPLLIIAEDE--EGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLED 291
Query: 347 AGVMAIEHADFDGI-ERLALVTGGEIVSTFDNPDQVKLGK--CDLIEE 391
++ + + ERLA + G +IVS + + LG+ L+EE
Sbjct: 292 IAILTGRRVKKEDLGERLAKLGGAKIVSVLKDLTTIVLGEGAAGLVEE 339
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family. Chaperonins are involved
in productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
Archaeal cpn60 (thermosome), together with TF55 from
thermophilic bacteria and the eukaryotic cytosol
chaperonin (CTT), belong to the type II group of
chaperonins. Cpn60 consists of two stacked octameric
rings, which are composed of one or two different
subunits. Their common function is to sequester
nonnative proteins inside their central cavity and
promote folding by using energy derived from ATP
hydrolysis.
Length = 517
Score = 266 bits (681), Expect = 4e-84
Identities = 133/351 (37%), Positives = 210/351 (59%), Gaps = 14/351 (3%)
Query: 48 VRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDG 107
V ILK + A+ + A A+ + V++TLGPKGMDK+LV + G V ITNDG
Sbjct: 1 VLILKEGTQRTSGRDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVD---SLGDVTITNDG 57
Query: 108 ATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTII 167
ATILK + +++PAAK+LV+++K QD+EVGDGTT+ VLA ELL+ AE L+DQ +HP II
Sbjct: 58 ATILKEMDIEHPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVII 117
Query: 168 AGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAV 227
G+R A + A + L E +I + ++ L IA+T+L+ K K+ + L VDAV
Sbjct: 118 EGYRLAAEKALELLDEIAIKVDPDD---KDTLRKIAKTSLTGKGAEAAKDKLADLVVDAV 174
Query: 228 LRL--KGSG----NLSAIQIIKKKGGCLEDSFLDEGFLLDK-KIGQHQPKRIENAKLLIA 280
L++ K G +L I+I KK GG ++D+ L G ++DK + PKR+ENAK+ +
Sbjct: 175 LQVAEKRDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGMPKRVENAKIALL 234
Query: 281 NTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYP 340
+ P++ K ++ +++R+ S ++ E+ +K+ V+KI ANV ++ I +
Sbjct: 235 DAPLEVKKTEI-DAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLA 293
Query: 341 EQLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEE 391
+ A AG++A+ +E+LA TG +IV+ D+ LG+ +L+EE
Sbjct: 294 QHYLAKAGILAVRRVKKSDMEKLARATGAKIVTNIDDLTPEDLGEAELVEE 344
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, eta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 522
Score = 259 bits (663), Expect = 2e-81
Identities = 134/325 (41%), Positives = 194/325 (59%), Gaps = 9/325 (2%)
Query: 73 AIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSKVQD 132
AI D V++TLGP+GMDK++V G+V I+NDGATILK + + +PAAK LVD++K QD
Sbjct: 27 AIADAVRTTLGPRGMDKLIVD---GRGKVTISNDGATILKLLDIVHPAAKTLVDIAKSQD 83
Query: 133 DEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASID-NGLN 191
EVGDGTTSV VLA E LK A+ I+ +HPQ II G+R+A +A + ++E +++ + +
Sbjct: 84 AEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKED 143
Query: 192 SEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKKGGCLED 251
E+ RE L A T L+SK+++ KE+F+K+ VDAVL L +L I I K GG LED
Sbjct: 144 KEEQRELLEKCAATALNSKLIASEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLED 203
Query: 252 SFLDEGFLLDKKIG----QHQPKRIENAKLLIANTPMDTDKIKVFGSRVRVDSMAKIAEL 307
S L G K + QPK+ +N K+L+ N ++ K + VRV+ + +
Sbjct: 204 SQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVELELKAEKD-NAEVRVEDPEEYQAI 262
Query: 308 ELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVT 367
AE + + DK+EKI+K ANV +++ I + Q FAD + + ++R+A T
Sbjct: 263 VDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKRVAQAT 322
Query: 368 GGEIVSTFDNPDQVKLGKCDLIEEV 392
GG I +T N LG C L EE
Sbjct: 323 GGSIQTTVSNITDDVLGTCGLFEER 347
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin
family, alpha subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 527
Score = 251 bits (643), Expect = 2e-78
Identities = 124/335 (37%), Positives = 201/335 (60%), Gaps = 20/335 (5%)
Query: 71 AIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSKV 130
A+AI ++VKS+LGP G+DK+LV + G V ITNDGATILK + V++PAAKILV+++++
Sbjct: 17 AMAIANIVKSSLGPVGLDKMLVD---DIGDVTITNDGATILKLLEVEHPAAKILVELAQL 73
Query: 131 QDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGL 190
QD EVGDGTTSV ++A+ELLK A +L+ Q++HP TII+G+R A A K ++E +
Sbjct: 74 QDKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSIS-- 131
Query: 191 NSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRLKGSGNL-------SAIQIIK 243
+E L+N+A+T++SSKI+ ++F+ + VDA+L +K + A+ I+K
Sbjct: 132 VDNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIKAVNILK 191
Query: 244 KKGGCLEDSFLDEGFLLDKKIG-QHQPKRIENAKLLIANTPMDTDKIKVFGSRVRVDSMA 302
G ++S+L G+ L+ Q P R++NAK+ + + K+K+ G +V V
Sbjct: 192 AHGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTKMKL-GVQVVVTDPE 250
Query: 303 KIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIER 362
K+ ++ E + K++++KIL ANV + I + + F +AG MA+ + + R
Sbjct: 251 KLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRR 310
Query: 363 LALVTGGEIVSTFDNP------DQVKLGKCDLIEE 391
+A TG +VST N D LG+ + + +
Sbjct: 311 IAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQ 345
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal.
Thermosome is the name given to the archaeal rather
than eukaryotic form of the group II chaperonin
(counterpart to the group I chaperonin, GroEL/GroES, in
bacterial), a torroidal, ATP-dependent molecular
chaperone that assists in the folding or refolding of
nascent or denatured proteins. Various homologous
subunits, one to five per archaeal genome, may be
designated alpha, beta, etc., but phylogenetic analysis
does not show distinct alpha subunit and beta subunit
lineages traceable to ancient paralogs [Protein fate,
Protein folding and stabilization].
Length = 519
Score = 248 bits (634), Expect = 4e-77
Identities = 135/354 (38%), Positives = 210/354 (59%), Gaps = 16/354 (4%)
Query: 47 PVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITND 106
PV ILK + K A+ ++ A A+ + VKSTLGP+GMDK+LV + G V ITND
Sbjct: 1 PVFILKEGTQRTKGRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVD---SLGDVTITND 57
Query: 107 GATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTI 166
GATILK + +++PAAK+LV+++K QD+EVGDGTT+ VLA ELL+ AE L++Q +HP I
Sbjct: 58 GATILKEMDIEHPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLEQDIHPTVI 117
Query: 167 IAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSK-ILSQHKEYFSKLAVD 225
I G+R+A + A + + E + R+ L +A T+L+SK K+ + L V+
Sbjct: 118 IEGYRKAAEKALEIIDEIATKISPED---RDLLKKVAETSLTSKASAEVAKDKLANLVVE 174
Query: 226 AVLRL-------KGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDK-KIGQHQPKRIENAKL 277
AV ++ K +L I+I+KK GG ++D+ L EG ++DK + PKR+ENAK+
Sbjct: 175 AVKQVAELRGDGKYYVDLDNIKIVKKTGGSIDDTELVEGIVVDKEVVHPGMPKRVENAKI 234
Query: 278 LIANTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIY 337
+ + P++ +K + + +R+ +I + E+ +K+ V+KI ANV I ++ I
Sbjct: 235 ALLDAPLEVEKTE-IDAEIRITDPDQIQKFLDQEEAMLKEMVDKIADAGANVVICQKGID 293
Query: 338 NYPEQLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEE 391
+ + A AG++A+ IE+LA TG IVS+ D + LG L+EE
Sbjct: 294 DVAQHYLAKAGILAVRRVKKSDIEKLARATGARIVSSIDEITESDLGYAGLVEE 347
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin
family, epsilon subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 526
Score = 240 bits (615), Expect = 3e-74
Identities = 134/371 (36%), Positives = 208/371 (56%), Gaps = 34/371 (9%)
Query: 46 NPVRILKHEAEEEKSEI----ARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQV 101
P I++ + E+K + A S + A ++ ++++++LGP+GMDKILVS G+V
Sbjct: 5 RPFIIVREQ--EKKKRLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVS---PDGEV 59
Query: 102 EITNDGATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRL 161
+TNDGATIL+ + VD+ AK+LV++SK QDDE+GDGTT V VLA LL+ AEKL+D+ +
Sbjct: 60 TVTNDGATILEKMDVDHQIAKLLVELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGI 119
Query: 162 HPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSK 221
HP I G+ +A IA + L E + S +E L+ A T+L SKI+S+ F++
Sbjct: 120 HPIRIADGYEQACKIAVEHLEEIADKIEF-SPDNKEPLIQTAMTSLGSKIVSRCHRQFAE 178
Query: 222 LAVDAVLRL----KGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQ-PKRIENAK 276
+AVDAVL + + N I++ K GG LED+ L +G ++DK Q PK +++AK
Sbjct: 179 IAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAK 238
Query: 277 LLIANTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFI----- 331
+ I P + K K ++ + S+ +L+ E++ ++ VE++ AN+ I
Sbjct: 239 IAILTCPFEPPKPKT-KHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGF 297
Query: 332 ----NRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCD 387
N L+ N L A V +E IE +A+ TGG IV F++ KLGK
Sbjct: 298 DDEANHLLLQN---GLPAVRWVGGVE------IELIAIATGGRIVPRFEDLSPEKLGKAG 348
Query: 388 LIEEVCLWTKN 398
L+ E+ T
Sbjct: 349 LVREISFGTTK 359
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 536
Score = 238 bits (608), Expect = 4e-73
Identities = 121/345 (35%), Positives = 206/345 (59%), Gaps = 22/345 (6%)
Query: 63 ARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAK 122
R + +A+ ++VK++LGP G+DK+LV + G V ITNDGATILK + V++PAAK
Sbjct: 13 VRTQNVTATMAVANIVKTSLGPVGLDKMLVD---DIGDVTITNDGATILKLLEVEHPAAK 69
Query: 123 ILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALR 182
ILV+++++QD EVGDGTTSV ++A+ELLK A +L+ ++HP +II+G+R A ++A++
Sbjct: 70 ILVELAQLQDREVGDGTTSVVIIAAELLKRANELVKNKVHPTSIISGYRLA---LKEAVK 126
Query: 183 EASIDNGLNSEKF-REDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRLKGSGN------ 235
+ ++ + +E L+N+A+T++SSKI+ ++FS + VDAVL +K +
Sbjct: 127 YIKENLSVSVDTLGKEALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKTTNENGEIKY 186
Query: 236 -LSAIQIIKKKGGCLEDSFLDEGFLLDKKIG-QHQPKRIENAKLLIANTPMDTDKIKVFG 293
+ A+ I+K G +S+L +G+ L+ Q PKRI+ AK+ + + K+ + G
Sbjct: 187 PIKAVNILKAHGKSARESYLVKGYALNCTRASQQMPKRIKKAKIACLDFNLQKAKMAL-G 245
Query: 294 SRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIE 353
++ VD AK+ ++ E + K++++KIL ANV + I + + F +AG M +
Sbjct: 246 VQIVVDDPAKLEQIRQREADITKERIKKILDAGANVVLTTGGIDDMCLKYFVEAGAMGVR 305
Query: 354 HADFDGIERLALVTGGEIVSTFDNP------DQVKLGKCDLIEEV 392
+ ++R+A TGG +VST + D LG D + +
Sbjct: 306 RCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVQE 350
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit. Members
of this family, all eukaryotic, are part of the group II
chaperonin complex called CCT (chaperonin containing
TCP-1) or TRiC. The archaeal equivalent group II
chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
eta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 523
Score = 236 bits (603), Expect = 1e-72
Identities = 130/352 (36%), Positives = 202/352 (57%), Gaps = 10/352 (2%)
Query: 46 NPVRILKHEAEEEKSEIARMSSFIGA-IAIGDLVKSTLGPKGMDKILVSMGRNSGQVEIT 104
P +L E + ++ S I A +AI + +K+TLGP+GMDK++V ++G+ ++
Sbjct: 1 RPTIVLLKEGTDTSQGKGQLISNINACVAIAEALKTTLGPRGMDKLIVG---SNGKATVS 57
Query: 105 NDGATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQ 164
NDGATILK + + +PAAK LVD++K QD EVGDGTTSV +LA ELLK A+ I++ +HPQ
Sbjct: 58 NDGATILKLLDIVHPAAKTLVDIAKSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQ 117
Query: 165 TIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAV 224
II G+R A +A + ++E ++ + RE L A T LSSK+++ +KE+FSK+ V
Sbjct: 118 LIIRGYREALSLAIEKIKEIAVTIDSEKGEQRELLEKCAATALSSKLIAHNKEFFSKMIV 177
Query: 225 DAVLRLKGSG-NLSAIQIIKKKGGCLEDSFLDEGFLLDKKIG----QHQPKRIENAKLLI 279
DAVL L +L I + K +GG LEDS L G K + QPK+ N K+L+
Sbjct: 178 DAVLSLDRDDLDLKLIGVKKVQGGALEDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILL 237
Query: 280 ANTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNY 339
N ++ K + + +RV+ + + AE + +K+ KI++ AN+ +++ I +
Sbjct: 238 LNVELEL-KAEKDNAEIRVEDVEDYQAIVDAEWAIIFEKLRKIVESGANIVLSKLPIGDL 296
Query: 340 PEQLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEE 391
Q FAD + + ++R+ GG I ST + + LG C L EE
Sbjct: 297 ATQYFADHNIFCAGRVSAEDMKRVIKACGGSIQSTTSDLEADVLGTCALFEE 348
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, delta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 515
Score = 217 bits (556), Expect = 1e-65
Identities = 127/354 (35%), Positives = 188/354 (53%), Gaps = 33/354 (9%)
Query: 58 EKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVD 117
EK R+S+ A A+ D ++++LGP+GMDK++ + G+V ITNDGATILK + V
Sbjct: 4 EKPADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQT---GKGEVIITNDGATILKQMSVL 60
Query: 118 NPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIA 177
+PAAK+LV++SK QD E GDGTTSV VLA LL E L+ + +HP I ++ A A
Sbjct: 61 HPAAKMLVELSKAQDIEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKA 120
Query: 178 RKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRL-----KG 232
+ L SI LN RE L+ A T+L+SK++SQ+ + +AVDAVL++
Sbjct: 121 VEILDSMSIPVDLND---RESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATAT 177
Query: 233 SGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKI--GQHQPKRIENAKLLIAN-------TP 283
+ +L I+I+KK GG +ED+ L +G + +K P RIE AK+ + T
Sbjct: 178 NVDLKDIRIVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTD 237
Query: 284 MDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVF-----INRQLIYN 338
MD + I V M +I E M +KI K NV I R + +
Sbjct: 238 MD-NNIVVNDYA----QMDRILREERKYILNM---CKKIKKSGCNVLLIQKSILRDAVSD 289
Query: 339 YPEQLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEV 392
A +M ++ + + IE + G + V++ D+ + KLG DL+EEV
Sbjct: 290 LALHFLAKLKIMVVKDIEREEIEFICKTIGCKPVASIDHFTEDKLGSADLVEEV 343
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
epsilon chain (part of a paralogous family) from
animals, plants, fungi, and other eukaryotes.
Length = 532
Score = 218 bits (557), Expect = 1e-65
Identities = 124/341 (36%), Positives = 196/341 (57%), Gaps = 10/341 (2%)
Query: 63 ARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAK 122
A+ S+ A ++ +++++LGPKGMDK+L+S G + +TNDGATIL + VDNP AK
Sbjct: 28 AKKSNIAAAKSVASILRTSLGPKGMDKMLIS---PDGDITVTNDGATILSQMDVDNPIAK 84
Query: 123 ILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALR 182
++V++SK QDDE+GDGTT V VLA LL+ AE+L+D+ +HP I G+ A +A + L
Sbjct: 85 LMVELSKSQDDEIGDGTTGVVVLAGALLEQAEELLDKGIHPIKIAEGFEEAARVAVEHLE 144
Query: 183 EASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRL----KGSGNLSA 238
E S D RE L+ A+T+L SKI+S+ F+++AVDAVL + + +
Sbjct: 145 EIS-DEISADNNNREPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLNVADMERRDVDFDL 203
Query: 239 IQIIKKKGGCLEDSFLDEGFLLDKKIGQHQ-PKRIENAKLLIANTPMDTDKIKVFGSRVR 297
I++ K GG LED+ L +G ++DK Q PK +++AK+ I P + K K ++
Sbjct: 204 IKVEGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKT-KHKLD 262
Query: 298 VDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADF 357
+ S+ + +L+ E++K K+ ++ I K AN+ I + + L + A+
Sbjct: 263 ISSVEEYKKLQKYEQQKFKEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGG 322
Query: 358 DGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEVCLWTKN 398
+E +A+ TGG IV F + KLGK L+ E+ T
Sbjct: 323 QELELIAIATGGRIVPRFQELSKDKLGKAGLVREISFGTTK 363
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
delta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 517
Score = 207 bits (529), Expect = 1e-61
Identities = 124/349 (35%), Positives = 200/349 (57%), Gaps = 19/349 (5%)
Query: 56 EEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVG 115
+++K + R S+ + A A+ D ++++LGPKGMDK++ G+V ITNDGATILK +
Sbjct: 3 DKDKPQDVRTSNIVAAKAVADAIRTSLGPKGMDKMIQD---GKGEVIITNDGATILKQMA 59
Query: 116 VDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATD 175
V +PAAK+LV++SK QD E GDGTTSV +LA LL E+L+++ +HP I ++ A D
Sbjct: 60 VLHPAAKMLVELSKAQDIEAGDGTTSVVILAGALLGACERLLNKGIHPTIISESFQSAAD 119
Query: 176 IARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRLKGSG- 234
A K L E SI L+ RE LL A T+LSSK++SQ+ + LAVDAVL++
Sbjct: 120 EAIKILDEMSIPVDLSD---REQLLKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPEN 176
Query: 235 ----NLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQ--PKRIENAKLLIANTPMDTDK 288
+L+ I+++KK GG ++D+ L EG + +K + P RIE AK+ + + K
Sbjct: 177 AKNVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASKSAGGPTRIEKAKIGLIQFQISPPK 236
Query: 289 IKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVF-----INRQLIYNYPEQL 343
+ +++ V+ A++ + E+ + + V+KI K NV I R + +
Sbjct: 237 TDM-ENQIIVNDYAQMDRVLKEERAYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHF 295
Query: 344 FADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEV 392
A +M ++ + + IE + G + +++ D+ KLG +L+EEV
Sbjct: 296 LAKMKIMVVKDIEREEIEFICKTIGCKPIASIDHFTADKLGSAELVEEV 344
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin
family, gamma subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 480
Score = 166 bits (422), Expect = 1e-46
Identities = 84/249 (33%), Positives = 144/249 (57%), Gaps = 17/249 (6%)
Query: 47 PVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDK-ILVSMGRNSGQVEITN 105
PV +L + E A++ + A + D++++ LGP+ M K +L MG + +TN
Sbjct: 1 PVLVLNQNTKRESGRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMG----GIVLTN 56
Query: 106 DGATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQT 165
DG IL+ + V +PAAK ++++S+ QD+EVGDGTTSV +LA E+L AE +++ +HP
Sbjct: 57 DGNAILREIDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEILAVAEPFLERGIHPTV 116
Query: 166 IIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVD 225
II +R+A + A K L E SI +N R +L I ++ + +K +S+ + LA+D
Sbjct: 117 IIKAYRKALEDALKILEEISIPVDVND---RAQMLKIIKSCIGTKFVSRWSDLMCNLALD 173
Query: 226 AVLRLKGSGNLSAIQI-IKK-------KGGCLEDSFLDEGFLLDKKIGQHQPKR-IENAK 276
AV + N +I IK+ GG +EDS + +G +L+K + + +R IEN +
Sbjct: 174 AVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPKMRRRIENPR 233
Query: 277 LLIANTPMD 285
+++ + P++
Sbjct: 234 IVLLDCPLE 242
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
gamma chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 525
Score = 164 bits (418), Expect = 9e-46
Identities = 105/356 (29%), Positives = 188/356 (52%), Gaps = 21/356 (5%)
Query: 47 PVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITND 106
PV +L + E A++S+ A A+ D++++TLGP+ M K+L+ G + +TND
Sbjct: 1 PVLVLNQNTKRESGRKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLD---PMGGIVMTND 57
Query: 107 GATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTI 166
G IL+ + V +PAAK ++++S+ QD+EVGDGTTSV +LA E+L AE ++Q +HP I
Sbjct: 58 GNAILREIDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTII 117
Query: 167 IAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDA 226
I +++A D A L E SI +N + +L + ++ + +K +S+ + LA+DA
Sbjct: 118 IRAYKKALDDALSVLEEISIPVDVNDD---AAMLKLIQSCIGTKFVSRWSDLMCDLALDA 174
Query: 227 VLRLK-GSGNLSAIQIIKK-------KGGCLEDSFLDEGFLLDKKIGQHQPKR-IENAKL 277
V +K GN IK+ GG +EDS + +G +++K + + +R IEN ++
Sbjct: 175 VRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPKMRRYIENPRI 234
Query: 278 LIANTPMDTDKIKVFGSRVRVDSMAK--IAELELAEKEKMKDKVEKILKHNANVFINRQL 335
++ + P++ K + S+ V+ M + + E+E ++ E I+ ++ I +
Sbjct: 235 VLLDCPLEYKKGE---SQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKG 291
Query: 336 IYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLG-KCDLIE 390
+ + + A + AI R+A G IV+ + + +G C L E
Sbjct: 292 VSDLAQHYLLKANISAIRRVRKTDNNRIARACGATIVNRPEELRESDVGTGCGLFE 347
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
zeta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 157 bits (398), Expect = 8e-43
Identities = 108/364 (29%), Positives = 188/364 (51%), Gaps = 26/364 (7%)
Query: 48 VRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDG 107
V++L +AE + + A M + A + D++K+ LGPKG K+LVS +G +++T DG
Sbjct: 2 VQLLNPKAESLRRDAALMMNINAARGLQDVLKTNLGPKGTLKMLVS---GAGDIKLTKDG 58
Query: 108 ATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTII 167
+L + + +P A ++ + QD+ GDGTTS +L ELLK AE+ I + +HP+ I
Sbjct: 59 NVLLNEMQIQHPTASMIARAATAQDEITGDGTTSTVILIGELLKQAERYILEGVHPRIIT 118
Query: 168 AGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAV 227
G+ A + L + + + RE LLN+ART+L +K+ + +++ VDAV
Sbjct: 119 EGFEIARKELLEFLDKFKVKTEDEVD--REFLLNVARTSLRTKLPIDLADQLTEIVVDAV 176
Query: 228 LRLKGSG---NLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQH--QPKRIENAKLLIANT 282
L +K G +L ++I++ K D+ L G +LD +H P+R++NA +L N
Sbjct: 177 LAIKKDGEDIDLFMVEIMEMKHKSATDTTLIRGLVLDHG-ARHPDMPRRVKNAYILTCNV 235
Query: 283 PMDTDKIKVFGSRV--RVDSMAKIAELELAEKEKMKDKVEKIL---------KHNAN-VF 330
++ +K +V + K+ AE++ + D+V+KI+ + V
Sbjct: 236 SLEYEKTEVNSGFFYSSAEQREKLVA---AERKFVDDRVKKIIELKKKVCGKSPDKGFVV 292
Query: 331 INRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIE 390
IN++ I L A G++A+ A +ERL L GGE +++ ++ LG L+
Sbjct: 293 INQKGIDPPSLDLLAKEGILALRRAKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVY 352
Query: 391 EVCL 394
E +
Sbjct: 353 ETTI 356
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily. Chaperonins
are involved in productive folding of proteins. They
share a common general morphology, a double toroid of 2
stacked rings, each composed of 7-9 subunits. There are
2 main chaperonin groups. The symmetry of type I is
seven-fold and they are found in eubacteria (GroEL) and
in organelles of eubacterial descent (hsp60 and RBP).
The symmetry of type II is eight- or nine-fold and they
are found in archea (thermosome), thermophilic bacteria
(TF55) and in the eukaryotic cytosol (CTT). Their
common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. This superfamily
also contains related domains from Fab1-like
phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases
that only contain the intermediate and apical domains.
Length = 209
Score = 146 bits (370), Expect = 9e-42
Identities = 61/209 (29%), Positives = 95/209 (45%), Gaps = 47/209 (22%)
Query: 196 REDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRLKGSG---NLSAIQIIKKKGGCLEDS 252
RE LL +A T+L+SK+ S ++ KL VDAVL++ +L I++ K GG LEDS
Sbjct: 1 RELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDS 59
Query: 253 FLDEGFLLDKK-IGQHQPKRIENAKLLIANTPMDTDKIKVFGSRVRVDSMAKIAELELAE 311
L G + DK + PKR+ENAK+L+ + P++
Sbjct: 60 ELVVGVVFDKGYASPYMPKRLENAKILLLDCPLEY------------------------- 94
Query: 312 KEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEI 371
V I + I + A AG+MA+ + +ER+A TG I
Sbjct: 95 -----------------VVIAEKGIDDLALHYLAKAGIMAVRRVKKEDLERIARATGATI 137
Query: 372 VSTFDNPDQVKLGKCDLIEEVCLWTKNVT 400
VS+ ++ LG +L+EE + + +T
Sbjct: 138 VSSLEDLTPEDLGTAELVEETKIGEEKLT 166
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, theta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 472
Score = 146 bits (371), Expect = 2e-39
Identities = 87/332 (26%), Positives = 158/332 (47%), Gaps = 51/332 (15%)
Query: 74 IGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSKVQDD 133
+ + +++ GP GM+K++++ ++ +T+D ATIL+ + V +PAAK+LV S++Q++
Sbjct: 20 LSQITRTSYGPNGMNKMVINH---LEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEE 76
Query: 134 EVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSE 193
E+GDGT V VLA ELL+ AE+L+ LHP II G+ +A A + L E + +
Sbjct: 77 EIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLR 136
Query: 194 KFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRLK----GSGNLSAIQIIKKKGGCL 249
E++ +T ++SK ++++ S L +A + + G+ N+ I+++K GG L
Sbjct: 137 NK-EEVSKALKTAIASKQYG-NEDFLSPLVAEACISVLPENIGNFNVDNIRVVKILGGSL 194
Query: 250 EDSFLDEGFLLDKKIGQHQPKRIENAKLLIANTPMDTDKIKVFGSRVRVDSMAKIAELEL 309
EDS + G + ++ KR++ AK+ + + P D G V V
Sbjct: 195 EDSKVVRGMVFKREPEG-SVKRVKKAKVAVFSCPFD------IGVNVIVAGG-------- 239
Query: 310 AEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIE-HADFDGIERLALVTG 368
V + H + N+ G+M I+ ++ F+ + RL G
Sbjct: 240 --------SVGDLALH----YCNK-------------YGIMVIKINSKFE-LRRLCRTVG 273
Query: 369 GEIVSTFDNPDQVKLGKCDLIEEVCLWTKNVT 400
+ P ++G CD + + V
Sbjct: 274 ATPLPRLGAPTPEEIGYCDSVYVEEIGDTKVV 305
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, zeta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 484
Score = 137 bits (348), Expect = 4e-36
Identities = 109/382 (28%), Positives = 179/382 (46%), Gaps = 61/382 (15%)
Query: 45 LNPVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEIT 104
LNP +AE + A + A + D++K+ LGPKG K+LVS +G +++T
Sbjct: 1 LNP------KAEVLRRGQALAVNISAAKGLQDVLKTNLGPKGTLKMLVS---GAGDIKLT 51
Query: 105 NDGATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQ 164
DG +L + + +P A ++ + QDD GDGTTS +L ELLK AE+ I + +HP+
Sbjct: 52 KDGNVLLSEMQIQHPTASMIARAATAQDDITGDGTTSNVLLIGELLKQAERYIQEGVHPR 111
Query: 165 TIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAV 224
I G+ A + A K L + + + RE LL++ART+L +K+ + + +++ V
Sbjct: 112 IITEGFELAKNKALKFLESFKVP--VEIDTDRELLLSVARTSLRTKLHADLADQLTEIVV 169
Query: 225 DAVLRLKGSG---NLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQH--QPKRIENAKLLI 279
DAVL + +L ++I++ + D+ L G +LD +H PKR+ENA +L
Sbjct: 170 DAVLAIYKPDEPIDLHMVEIMQMQHKSDSDTKLIRGLVLDHG-ARHPDMPKRVENAYILT 228
Query: 280 ANTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVF----INRQL 335
N ++ +K +V N+ F IN++
Sbjct: 229 CNVSLEYEKTEV----------------------------------NSGFFYSVVINQKG 254
Query: 336 IYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEVCL- 394
I + A G++A+ A +ERL L GG +++ D+ LG L+ E L
Sbjct: 255 IDPPSLDMLAKEGILALRRAKRRNMERLTLACGGVAMNSVDDLSPECLGYAGLVYERTLG 314
Query: 395 ---WT--KNVTGPTVSTYSISG 411
+T + V P T I G
Sbjct: 315 EEKYTFIEGVKNPKSCTILIKG 336
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 129 bits (325), Expect = 1e-32
Identities = 86/322 (26%), Positives = 169/322 (52%), Gaps = 13/322 (4%)
Query: 74 IGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSKVQDD 133
+ + +++LGP GM+K++++ + ++ +TND ATIL+ + V +PAAK+LV S++Q++
Sbjct: 30 LSQITRTSLGPNGMNKMVIN---HLDKLFVTNDAATILRELEVQHPAAKLLVMASEMQEN 86
Query: 134 EVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSE 193
E+GDGT V VLA ELL AE+LI LHP II G+ A A + L E + +
Sbjct: 87 EIGDGTNLVIVLAGELLNKAEELIRMGLHPSEIIKGYEMALKKAMEVLEELVVWEIEDLR 146
Query: 194 KFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRLK----GSGNLSAIQIIKKKGGCL 249
+++L+ + ++SSK ++++ S+L A + + N+ I+++K GG L
Sbjct: 147 D-KKELIKALKASISSKQYG-NEDFLSQLVAKACSTVLPKNPQNFNVDNIRVVKIMGGSL 204
Query: 250 EDSFLDEGFLLDKKIGQHQPKRIENAKLLIANTPMDTDKIKVFGSRVRVDSMAKIAELEL 309
+S + +G + +++ KR++ AK+ + + P+DT + G+ V + + ++
Sbjct: 205 SNSEVIKGMVFNREAEGSV-KRVKKAKVAVFSCPLDTATTETKGT-VLIHNAEELLNYSK 262
Query: 310 AEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIE-HADFDGIERLALVTG 368
E+ +++ ++ I NV + + + G+M ++ + F+ + RL G
Sbjct: 263 GEENQIEAMIKAIADSGVNVIVTGGSVGDMALHYLNRYGIMVLKIPSKFE-LRRLCKTVG 321
Query: 369 GEIVSTFDNPDQVKLGKCDLIE 390
+ P +LG D +
Sbjct: 322 ATPLPRLGAPTPEELGYVDSVY 343
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin. Chaperonins are
involved in productive folding of proteins. They share a
common general morphology, a double toroid of 2 stacked
rings, each composed of 7-9 subunits. The symmetry of
type I is seven-fold and they are found in eubacteria
(GroEL) and in organelles of eubacterial descent (hsp60
and RBP). With the aid of cochaperonin GroES, GroEL
encapsulates non-native substrate proteins inside the
cavity of the GroEL-ES complex and promotes folding by
using energy derived from ATP hydrolysis.
Length = 520
Score = 77.1 bits (191), Expect = 3e-15
Identities = 41/144 (28%), Positives = 78/144 (54%), Gaps = 14/144 (9%)
Query: 70 GAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNP----AAKILV 125
G + D VK TLGPKG + V + ++ G +IT DG T+ K + +++P A+++
Sbjct: 16 GVNKLADAVKVTLGPKGRN---VVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVK 72
Query: 126 DMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREAS 185
+++ +D GDGTT+ TVLA ++K K + +P + G +A + + L++ S
Sbjct: 73 EVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLS 132
Query: 186 IDNGLNSEKFREDLLNIARTTLSS 209
+ ++ E++ +A T+S+
Sbjct: 133 KP--VKTK---EEIAQVA--TISA 149
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional.
Length = 555
Score = 67.6 bits (166), Expect = 3e-12
Identities = 57/235 (24%), Positives = 110/235 (46%), Gaps = 28/235 (11%)
Query: 63 ARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSV----GVDN 118
AR S G + D V TLGPKG + I+ G +IT DG T+ K++ +N
Sbjct: 23 ARQSLLKGIERLADAVAVTLGPKGRNVIIEQ---EYGSPKITKDGVTVAKAIEFSDRFEN 79
Query: 119 PAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIAR 178
A+++ ++ +D+ GDGTT+ T+LA + + K + L+P + G A +
Sbjct: 80 VGAQLIRQVASKTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVL 139
Query: 179 KALREASIDNGLNSEKFREDLLNIARTTLSS-------KILSQHKEYFSKLAVDAVLRLK 231
++L+E S K +ED+LN+A T+S+ +++ K+ D + ++
Sbjct: 140 ESLKEQSRP-----VKTKEDILNVA--TISANGDVEIGSLIAD---AMDKVGKDGTITVE 189
Query: 232 GSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQPKRIENAKLLIANTPMDT 286
G ++ +G + ++ F+ ++K Q +EN +L+ + + +
Sbjct: 190 -DGKTLEDELEVVEGMSFDRGYISPYFVTNEK---TQKVELENPLILVTDKKISS 240
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 65.2 bits (160), Expect = 2e-11
Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 13/141 (9%)
Query: 50 ILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGAT 109
I+K + E AR + G + D VK TLGPKG + V + ++ G IT DG +
Sbjct: 4 IIKFDEE------ARRALERGVNKLADAVKVTLGPKGRN---VVIDKSFGAPTITKDGVS 54
Query: 110 ILKSVGVDNP----AAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQT 165
I K + +++P A+++ +++ +D GDGTT+ TVLA L++ K + +P
Sbjct: 55 IAKEIELEDPFENLGAQLVKEVASKTNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMD 114
Query: 166 IIAGWRRATDIARKALREASI 186
+ G +A + + L+ +
Sbjct: 115 LKRGIDKAVEAVVEELKALAR 135
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed.
Length = 544
Score = 64.4 bits (157), Expect = 4e-11
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 7/138 (5%)
Query: 60 SEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNP 119
S AR G + + VK TLGPKG + +L ++ G IT DG T+ K + +++
Sbjct: 9 STDARDRLLRGVNILANAVKVTLGPKGRNVVL---EKSFGAPRITKDGVTVAKEIELEDK 65
Query: 120 AAKILVDMSK----VQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATD 175
+ M K +D GDGTT+ TVLA +++ KL+ ++P + G A
Sbjct: 66 FENMGAQMVKEVASKTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVA 125
Query: 176 IARKALREASIDNGLNSE 193
L++ + + E
Sbjct: 126 AVVDELKKIAKKVTSSKE 143
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed.
Length = 541
Score = 62.8 bits (153), Expect = 1e-10
Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 63 ARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNP--- 119
AR G + D VK TLGPKG + V + ++ G ITNDG TI K + +++
Sbjct: 12 AREKMLRGVNILADAVKVTLGPKGRN---VVIDKSFGAPTITNDGVTIAKEIELEDKFEN 68
Query: 120 -AAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIAR 178
A+++ +++ +D GDGTT+ TVLA +++ K + +P + G RA
Sbjct: 69 MGAQMVREVASKTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVV 128
Query: 179 KALREAS 185
+ L+ +
Sbjct: 129 EELKANA 135
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL. This family consists of GroEL,
the larger subunit of the GroEL/GroES cytosolic
chaperonin. It is found in bacteria, organelles derived
from bacteria, and occasionally in the Archaea. The
bacterial GroEL/GroES group I chaperonin is replaced a
group II chaperonin, usually called the thermosome in
the Archaeota and CCT (chaperone-containing TCP) in the
Eukaryota. GroEL, thermosome subunits, and CCT subunits
all fall under the scope of pfam00118 [Protein fate,
Protein folding and stabilization].
Length = 524
Score = 58.8 bits (143), Expect = 2e-09
Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 7/132 (5%)
Query: 60 SEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNP 119
E AR + G + D VK TLGPKG + +L ++ G IT DG T+ K + +++
Sbjct: 7 DEEARKALLRGVDKLADAVKVTLGPKGRNVVL---EKSFGAPTITKDGVTVAKEIELEDK 63
Query: 120 ----AAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATD 175
A+++ +++ +D GDGTT+ TVLA ++K K + +P + G +A +
Sbjct: 64 FENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVE 123
Query: 176 IARKALREASID 187
+ L++ S
Sbjct: 124 AVVEELKKLSKP 135
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 57.8 bits (141), Expect = 5e-09
Identities = 40/130 (30%), Positives = 69/130 (53%), Gaps = 7/130 (5%)
Query: 60 SEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNP 119
E AR G + D VK TLGPKG + +L ++ G IT DG T+ K + +++P
Sbjct: 8 GEDARRKLLRGVNKLADAVKVTLGPKGRNVVL---EKSFGAPTITKDGVTVAKEIELEDP 64
Query: 120 ----AAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATD 175
A+++ +++ +D GDGTT+ TVLA +++ K + +P + G +A +
Sbjct: 65 FENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVE 124
Query: 176 IARKALREAS 185
A + L++ S
Sbjct: 125 AAVEELKKIS 134
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional.
Length = 600
Score = 56.9 bits (137), Expect = 9e-09
Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 9/130 (6%)
Query: 60 SEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNP 119
S I ++ + G + DLV TLGPKG + +L S G +I NDG T+ K V +++P
Sbjct: 66 SAIKKLQA--GVNKLADLVGVTLGPKGRNVVLES---KYGSPKIVNDGVTVAKEVELEDP 120
Query: 120 ----AAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATD 175
AK++ + +D GDGTT+ VLA L+ K++ +P I G +
Sbjct: 121 VENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAK 180
Query: 176 IARKALREAS 185
K L++ S
Sbjct: 181 ALVKELKKMS 190
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed.
Length = 545
Score = 55.2 bits (133), Expect = 3e-08
Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 11/123 (8%)
Query: 63 ARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVD----N 118
AR G + + VK TLGPKG + V + ++ G IT DG T+ K + ++ N
Sbjct: 12 ARDRMLRGVDILANAVKVTLGPKGRN---VVIEKSFGAPRITKDGVTVAKEIELEDKFEN 68
Query: 119 PAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIAR 178
A+++ +++ +D GDGTT+ TVLA +++ K + ++P + +R DIA
Sbjct: 69 MGAQMVREVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDL----KRGIDIAV 124
Query: 179 KAL 181
A+
Sbjct: 125 AAV 127
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional.
Length = 546
Score = 54.3 bits (130), Expect = 6e-08
Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 11/123 (8%)
Query: 63 ARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVD----N 118
AR G + + VK TLGPKG + V + ++ G IT DG T+ K + ++ N
Sbjct: 12 ARDRMLRGVDILANAVKVTLGPKGRN---VVLDKSFGAPRITKDGVTVAKEIELEDKFEN 68
Query: 119 PAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIAR 178
A+++ +++ D GDGTT+ TVLA +++ K + ++P + +R D+A
Sbjct: 69 MGAQMVREVASKSADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDL----KRGIDLAV 124
Query: 179 KAL 181
+A+
Sbjct: 125 EAV 127
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL.
Length = 529
Score = 49.3 bits (118), Expect = 2e-06
Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 78 VKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDM-----SKVQD 132
V TLGPKG + V + + G +I NDG TI K + +++ V + SK +
Sbjct: 26 VSVTLGPKGRN---VVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKT-N 81
Query: 133 DEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRAT 174
D GDGTT+ TVLA ++K K + +P ++ G +AT
Sbjct: 82 DVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKAT 123
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic
phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase
Fab1. Fab1p is important for vacuole size regulation,
presumably by modulating PtdIns(3,5)P2 effector
activity. In the human homolog p235/PIKfyve deletion of
this domain leads to loss of catalytic activity. However
no exact function this domain has been defined. In
general, chaperonins are involved in productive folding
of proteins.
Length = 261
Score = 45.7 bits (109), Expect = 2e-05
Identities = 35/154 (22%), Positives = 75/154 (48%), Gaps = 10/154 (6%)
Query: 239 IQIIKKKGGCLEDSFLDEGFLLDKKIG-QHQPKRIENAKLLIANTPMDTDKIKVFGSRVR 297
++I K GG DS + +G + K + + P +I+N ++L+ P++ +++
Sbjct: 50 VKIKKIPGGSPSDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQGPLEYQRVEN------ 103
Query: 298 VDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADF 357
+ + + L EKE +K+ V +I+ +V + + + + L +AG+ + +
Sbjct: 104 --KLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKP 161
Query: 358 DGIERLALVTGGEIVSTFD-NPDQVKLGKCDLIE 390
+ER++ TG +I+S+ D KLG C+
Sbjct: 162 SVLERISRCTGADIISSMDDLLTSPKLGTCESFR 195
>gnl|CDD|212107 cd10795, GH57N_MJA1_like, N-terminal catalytic domain of a
thermoactive alpha-amylase from Methanococcus jannaschii
and similar proteins; glycoside hydrolase family 57
(GH57). The subfamily is represented by a thermostable
alpha-amylase (MJA1, EC 3.2.1.1) encoded from the
hyperthermophilic archaeon Methanococcus jannaschii
locus, M J1611. MJA1 has a broad pH optimum 5.0-8.0. It
exhibits extremely thermophilic alpha-amylase activity
that catalyzes the hydrolysis of large sugar polymers
with alpha-l,6 and alpha-l,4 linkages, and yields
products including glucose polymers of 1-7 units. MJ1611
also encodes another alpha-amylase with catalytic
features distinct from MJA1, which belongs to glycoside
hydrolase family 13 (GH-13), and is not included here.
This subfamily also includes many uncharacterized
proteins found in bacteria and archaea.
Length = 306
Score = 31.4 bits (72), Expect = 0.79
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 313 EKMKDKVEKILKHNANVFINRQLIYN 338
+ ++ ++++ VF N +LIY+
Sbjct: 123 KMHRELIKELFGVKPTVFRNTELIYS 148
>gnl|CDD|224725 COG1812, MetK, Archaeal S-adenosylmethionine synthetase [Amino acid
transport and metabolism].
Length = 400
Score = 30.3 bits (69), Expect = 1.9
Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 17/104 (16%)
Query: 271 RIENAKLLIANTPMDTDKIKVFGSRVR-----------VDSMAKIAELELAEKEKMKDKV 319
R N+ P + IKV G R VD + + + KE+++ V
Sbjct: 179 RYLNSPEFKKKLPAVGEDIKVMGLREGDEISLTIAAALVDKYVEDIDEYIEVKEEVRKHV 238
Query: 320 EKILKH----NANVFINRQLIYNYPEQLFADAGVMAIEHADFDG 359
E + V+IN ++ + E D DG
Sbjct: 239 EDLASEITDREVEVYINTADDPER-GSVYLTVTGTSAEQGD-DG 280
>gnl|CDD|185157 PRK15245, PRK15245, type III effector phosphothreonine lyase;
Provisional.
Length = 241
Score = 29.5 bits (66), Expect = 2.6
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 14/93 (15%)
Query: 117 DNPAAKILV-DMSKV-QDDEVGDG---TTSV------TVLASELLKNAEKLI---DQRLH 162
D+P K V DM +V Q VG G T V + ++ L + I + RL
Sbjct: 129 DSPVDKWKVTDMERVSQQSRVGLGAQFTLYVKPDQENSQYSASFLHKTRQFIECLESRLS 188
Query: 163 PQTIIAGWRRATDIARKALREASIDNGLNSEKF 195
+I+G +D+ + + S N L S +
Sbjct: 189 ENGVISGQCPESDVHPENWKYLSYRNELRSGRD 221
>gnl|CDD|147328 pfam05095, DUF687, Protein of unknown function (DUF687). This
family contains several uncharacterized Chlamydia
proteins.
Length = 542
Score = 30.0 bits (68), Expect = 2.9
Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 21 TIPTKPTLQ--ILPKFFDSCFTFQVSLNPVRILK-HEAEEEKSEIARMSSFIGAIAIGDL 77
T+P + LP D F + + L + + E + ++ S I + +
Sbjct: 185 TLPYSSGSEGIFLPSVRDPSFQWALRLGFMCLAGISELSQLLGPPSQDSEEISSRLQALV 244
Query: 78 VKSTLGPKGMDKI--LVSMGRNSGQVEI 103
V S+ P ++ L++ G S + E
Sbjct: 245 VNSSSDPVAFTRLQELLNEGDTSSEAEA 272
>gnl|CDD|109875 pfam00837, T4_deiodinase, Iodothyronine deiodinase.
Iodothyronine deiodinase converts thyroxine (T4) to
3,5,3'-triiodothyronine (T3).
Length = 237
Score = 29.4 bits (66), Expect = 3.0
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 27 TLQILPKFFDSCFTFQVSLNPVRILKH 53
L +LP F + + L+ + KH
Sbjct: 8 CLLLLPVFLATGLVLWL-LDFACVRKH 33
>gnl|CDD|226489 COG3981, COG3981, Predicted acetyltransferase [General function
prediction only].
Length = 174
Score = 28.9 bits (65), Expect = 3.5
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 211 ILSQHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKKGGCLEDSFLDEG 257
+L E +L + VL N+++ ++I+ GG LE+ F EG
Sbjct: 118 MLKLALEKARELGIKKVLVTCDKDNIASRKVIEANGGILENEFFGEG 164
>gnl|CDD|238266 cd00477, FTHFS, Formyltetrahydrofolate synthetase (FTHFS) catalyzes
the ATP-dependent activation of formate ion via its
addition to the N10 position of tetrahydrofolate. FTHFS
is a highly expressed key enzyme in both the
Wood-Ljungdahl pathway of autotrophic CO2 fixation
(acetogenesis) and the glycine synthase/reductase
pathways of purinolysis. The key physiological role of
this enzyme in acetogens is to catalyze the formylation
of tetrahydrofolate, an initial step in the reduction of
carbon dioxide and other one-carbon precursors to
acetate. In purinolytic organisms, the enzymatic
reaction is reversed, liberating formate from
10-formyltetrahydrofolate with concurrent production of
ATP.
Length = 524
Score = 29.4 bits (67), Expect = 3.9
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 14/65 (21%)
Query: 156 LIDQRLH--------PQTIIAGWRRATDIARKALREASIDNGLNSEKF-REDLLNIARTT 206
ID +H P+ I W+R D+ +ALR+ I G RE +I T
Sbjct: 127 AIDNHIHHGNRLDIDPRRIT--WKRVLDVNDRALRKIVIGLGGKENGVPRETGFDI---T 181
Query: 207 LSSKI 211
++S+I
Sbjct: 182 VASEI 186
>gnl|CDD|221877 pfam12972, NAGLU_C, Alpha-N-acetylglucosaminidase (NAGLU)
C-terminal domain. Alpha-N-acetylglucosaminidase, a
lysosomal enzyme required for the stepwise degradation
of heparan sulfate. Mutations on the
alpha-N-acetylglucosaminidase (NAGLU) gene can lead to
Mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo
syndrome type B) characterized by neurological
dysfunction but relatively mild somatic manifestations.
The structure shows that the enzyme is composed of three
domains. This C-terminal domain has an all alpha helical
fold.
Length = 269
Score = 29.2 bits (66), Expect = 3.9
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 23/102 (22%)
Query: 191 NSEKFREDLLNIARTTLSSKILSQHKEY---FSKLAVDAVLRLKGSGNLSAIQIIKKKGG 247
S FR DL+++ R L++ +KE + V A L S ++++
Sbjct: 86 GSPTFRYDLVDVTRQVLANLADELYKELIEAYRAKDVAAFKAL--SSKF--LELLL---- 137
Query: 248 CLEDSFL--DEGFLLDKKIGQHQPKRIENAKLLIANTPMDTD 287
D L D FLL +E+A+ L T + D
Sbjct: 138 -DLDRLLATDPNFLLG--------TWLEDARSL-GTTAAEKD 169
>gnl|CDD|219091 pfam06575, DUF1132, Protein of unknown function (DUF1132). This
family consists of several hypothetical proteins from
Neisseria meningitidis. The function of this family is
unknown.
Length = 95
Score = 27.5 bits (61), Expect = 4.8
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 290 KVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGV 349
K FG SMA IA+ E E K +K I++ + F+NR++ +N + F+D V
Sbjct: 11 KYFGQ-----SMALIAQSEFEEFVKN-NKEYDIIE-CFSYFLNRRISHNIWKIYFSDESV 63
Query: 350 MAIEHADFDGIE 361
+ I+ ++ +G E
Sbjct: 64 IFIKKSEENGKE 75
>gnl|CDD|217663 pfam03659, Glyco_hydro_71, Glycosyl hydrolase family 71. Family of
alpha-1,3-glucanases.
Length = 386
Score = 29.1 bits (66), Expect = 5.0
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 83 GPKGMDKILVSMGRNSGQV--EITNDGATILKSVG 115
G G+ V G +G+V ++ +G T+ G
Sbjct: 352 GGAGIYHGSVPFGGATGEVVFSLSRNGKTVASGTG 386
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 814
Score = 29.2 bits (66), Expect = 5.5
Identities = 12/64 (18%), Positives = 22/64 (34%)
Query: 127 MSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASI 186
+ K+ ++ + L +K + + R T IA + RK LR
Sbjct: 641 LEKLVEELTKEQGKEDRWLLHRTIKKVTEDFEARQTFNTAIAALMELLNALRKYLRRTEG 700
Query: 187 DNGL 190
D +
Sbjct: 701 DRKV 704
>gnl|CDD|213400 cd12193, B_zip1, basic leucine zipper DNA-binding and
multimerization region of GCN4 and related proteins.
Basic leucine zipper (bZIP) transcription factors act in
networks of homo- and hetero-dimers in the regulation in
a diverse set of cellular pathways. Classical leucine
zippers have alpha helices with leucine residues 7 amino
acids apart, which stabilize dimerization with a
parallel leucine zipper domain. Dimerization creates a
pair of basic regions that bind DNA and undergo
conformational change. GCN4 was identified in
Saccharomyces cerevisiae from mutations in a deficiency
in activation with the general amino acid control
pathway. GCN4 encodes a trans-activator of amino acid
biosynthetic genes containing 2 acidic activation
domains and a C-terminal bZIP domain, comprised of a
basic alpha-helical DNA-binding region and a coiled-coil
dimerization region.
Length = 54
Score = 26.1 bits (58), Expect = 5.9
Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 288 KIKVFGSRVRVDSMAKIAELE------LAEKEKMKDKVEKILKHNA 327
+ + R R M ++ +LE +E ++D+V+++ K A
Sbjct: 9 RNREAARRSRARKMERMKQLEDKVEELTSENSDLEDEVDRLKKALA 54
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 28.9 bits (65), Expect = 6.2
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 83 GPKGMDKILVSMGRNSGQVEITNDGATI 110
G M I V++ +G++ + NDG I
Sbjct: 78 GGHRMTYIKVTIDEENGEISVYNDGEGI 105
>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 7. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek7 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek7 is required
for mitotic spindle formation and cytokinesis. It is
enriched in the centrosome and is critical for
microtubule nucleation. Nek7 is activated by Nek9 during
mitosis, and may regulate the p70 ribosomal S6 kinase.
Length = 267
Score = 28.5 bits (63), Expect = 6.5
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 258 FLLDKKIGQHQPKRIENAKLLIANTPMDTDKIKVF---GSRVRVDSMAKI 304
F ++KKIG+ Q + A L+ P+ K+++F ++ R D + +I
Sbjct: 4 FRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEI 53
>gnl|CDD|153349 cd07665, BAR_SNX1, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting
Nexin 1. BAR domains are dimerization, lipid binding
and curvature sensing modules found in many different
proteins with diverse functions. Sorting nexins (SNXs)
are Phox homology (PX) domain containing proteins that
are involved in regulating membrane traffic and protein
sorting in the endosomal system. SNXs differ from each
other in their lipid-binding specificity, subcellular
localization and specific function in the endocytic
pathway. A subset of SNXs also contain BAR domains. The
PX-BAR structural unit determines the specific membrane
targeting of SNXs. SNX1 is a component of the retromer
complex, a membrane coat multimeric complex required for
endosomal retrieval of lysosomal hydrolase receptors to
the Golgi. The retromer consists of a cargo-recognition
subcomplex and a subcomplex formed by a dimer of sorting
nexins (SNX1 and/or SNX2), which ensures effcient cargo
sorting by facilitating proper membrane localization of
the cargo-recognition subcomplex. SNX1 is localized to a
microdomain in early endosomes where it regulates
cation-independent mannose-6-phosphate receptor
retrieval to the trans Golgi network. BAR domains form
dimers that bind to membranes, induce membrane bending
and curvature, and may also be involved in
protein-protein interactions.
Length = 234
Score = 28.1 bits (62), Expect = 7.0
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 13/92 (14%)
Query: 268 QPKRIENAKLLIANTP----MDTDKIKVFGSRV--------RVDSMAKIAELELAEKEKM 315
Q KR A+LL AN P D+I + SRV R+ + + E+ EKEK
Sbjct: 143 QKKREAEARLLWANKPDKLQQAKDEIAEWESRVTQYERDFERISATVR-KEVIRFEKEKS 201
Query: 316 KDKVEKILKHNANVFINRQLIYNYPEQLFADA 347
KD I+K+ + ++Q + Y E +A
Sbjct: 202 KDFKNHIIKYLETLLHSQQQLVKYWEAFLPEA 233
>gnl|CDD|131508 TIGR02455, TreS_stutzeri, trehalose synthase, Pseudomonas stutzeri
type. Trehalose synthase catalyzes a one-step
conversion of maltose to trehalose. This is an
alternative to the OtsAB and TreYZ pathways. This family
includes a characterized example from Pseudomonas
stutzeri plus very closely related sequences from other
Pseudomonads. Cutoff scores are set to find a more
distantly related sequence from Desulfovibrio vulgaris,
likely to be functionally equivalent, between trusted
and noise limits [Energy metabolism, Biosynthesis and
degradation of polysaccharides, Cellular processes,
Adaptations to atypical conditions].
Length = 688
Score = 28.8 bits (64), Expect = 7.3
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 55 AEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSM--GRNSG---QVEITNDGAT 109
+EEE +++RM++ AI I D++ + G KG D L + G G VEI +
Sbjct: 128 SEEELIQLSRMAAAHNAITIDDIIPAHTG-KGADFRLAELAHGDYPGLYHMVEIREEDWA 186
Query: 110 ILKSVGVDNPAAKILVDMSKVQDDEV 135
+L V PA + V++ Q DE+
Sbjct: 187 LLPEV----PAGRDAVNLLPAQCDEL 208
>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 6. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek6 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek6 is required
for the transition from metaphase to anaphase. It also
plays important roles in mitotic spindle formation and
cytokinesis. Activated by Nek9 during mitosis, Nek6
phosphorylates Eg5, a kinesin that is important for
spindle bipolarity. Nek6 localizes to spindle
microtubules during metaphase and anaphase, and to the
midbody during cytokinesis.
Length = 267
Score = 28.5 bits (63), Expect = 7.4
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 258 FLLDKKIGQHQPKRIENAKLLIANTPMDTDKIKVF---GSRVRVDSMAKIAELE 308
F ++KKIG+ Q + A L+ P+ K+++F ++ R D + +I L+
Sbjct: 4 FQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLK 57
>gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination,
and repair].
Length = 845
Score = 28.4 bits (64), Expect = 7.9
Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 6/106 (5%)
Query: 174 TDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVL-RLKG 232
D R + R + E + + S + EY S L V AV +
Sbjct: 1 RDEERLSRRLREATDAAMQEMKNQVRGSGMDARSRSANVPDILEYRSGLPVTAVRDEILK 60
Query: 233 SGNLSAIQIIKKKGGC-----LEDSFLDEGFLLDKKIGQHQPKRIE 273
+ + + II + G L L+EG + KIG QP+R+
Sbjct: 61 AIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLA 106
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.377
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,460,632
Number of extensions: 2158070
Number of successful extensions: 2344
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2226
Number of HSP's successfully gapped: 74
Length of query: 418
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 319
Effective length of database: 6,546,556
Effective search space: 2088351364
Effective search space used: 2088351364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)