RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17549
(418 letters)
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Length = 513
Score = 506 bits (1305), Expect = e-178
Identities = 257/338 (76%), Positives = 300/338 (88%), Gaps = 1/338 (0%)
Query: 55 AEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSV 114
A+EE++E AR+SSFIGAIAIGDLVKSTLGPKGMDKIL+S GR+ + +TNDGATILK++
Sbjct: 3 ADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRD-ASLMVTNDGATILKNI 61
Query: 115 GVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRAT 174
GVDNPAAK+LVDMS+VQDDEVGDGTTSVTVLA+ELL+ AE LI +++HPQTIIAGWR AT
Sbjct: 62 GVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREAT 121
Query: 175 DIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRLKGSG 234
AR+AL +++D+G + KFR+DL+NIA TTLSSK+L+ HK++F+KLAV+AVLRLKGSG
Sbjct: 122 KAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGSG 181
Query: 235 NLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQPKRIENAKLLIANTPMDTDKIKVFGS 294
NL AI +IKK GG L DS+LDEGFLLDKKIG +QPKRIENAK+LIANT MDTDKIK+FGS
Sbjct: 182 NLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGS 241
Query: 295 RVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEH 354
RVRVDS AK+AE+E AEKEKMK+KVE+ILKH N FINRQLIYNYPEQLF AGVMAIEH
Sbjct: 242 RVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEH 301
Query: 355 ADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEV 392
ADF G+ERLALVTGGEI STFD+P+ VKLG C LIEEV
Sbjct: 302 ADFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEV 339
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b*
Length = 527
Score = 501 bits (1292), Expect = e-176
Identities = 229/347 (65%), Positives = 289/347 (83%), Gaps = 3/347 (0%)
Query: 47 PVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITND 106
V+I + EE++E AR+S+F+GAIA+GDLVKSTLGPKGMDK+L S +S +TND
Sbjct: 2 SVQIFGDQVTEERAENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQS--ASSNTCMVTND 59
Query: 107 GATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQ-RLHPQT 165
GATILKS+ +DNPAAK+LV++SKVQDDEVGDGTTSVTVL++ELL+ AEKLIDQ ++HPQT
Sbjct: 60 GATILKSIPLDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQT 119
Query: 166 IIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVD 225
II G+R A+ A AL +A++DN + FREDL++IA+TTLSSKILSQ K++F++LA +
Sbjct: 120 IIEGYRLASAAALDALTKAAVDNSHDKTMFREDLIHIAKTTLSSKILSQDKDHFAELATN 179
Query: 226 AVLRLKGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQPKRIENAKLLIANTPMD 285
A+LRLKGS NL IQIIK GG L DSFLDEGF+L KK G +QPKRIENAK+LIANT +D
Sbjct: 180 AILRLKGSTNLEHIQIIKILGGKLSDSFLDEGFILAKKFGNNQPKRIENAKILIANTTLD 239
Query: 286 TDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFA 345
TDK+K+FG++ +VDS AK+A+LE AE+EKMK+K+ KI K N FINRQLIY+YPEQLF
Sbjct: 240 TDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFT 299
Query: 346 DAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEV 392
D G+ +IEHADF+G+ERLALVTGGE+VSTFD P + KLG+CD+IEE+
Sbjct: 300 DLGINSIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGECDVIEEI 346
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g*
Length = 550
Score = 478 bits (1234), Expect = e-167
Identities = 115/351 (32%), Positives = 188/351 (53%), Gaps = 9/351 (2%)
Query: 47 PVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITND 106
+ +LK + + + +S+ +A+ + +K TLGP G D ++V+ ++ + I+ND
Sbjct: 9 TIVVLKEGTDASQGKGQIISNINACVAVQEALKPTLGPLGSDILIVT---SNQKTTISND 65
Query: 107 GATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTI 166
GATILK + V +PAAK LVD+S+ QD EVGDGTTSVT+LA EL+K A+ +++ + I
Sbjct: 66 GATILKLLDVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLI 125
Query: 167 IAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDA 226
+ G+R+A +A + + E ++D RE L ART +SSK++ + ++F K+ VDA
Sbjct: 126 MKGYRKAVSLAVEKINELAVDITSEKSSGRELLERCARTAMSSKLIHNNADFFVKMCVDA 185
Query: 227 VLRLK-GSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIG----QHQPKRIENAKLLIAN 281
VL L + I I K GG +E+S G K + QPK+ N K+L N
Sbjct: 186 VLSLDRNDLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLN 245
Query: 282 TPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPE 341
++ K + VRV+ + + AE + + +K+ ++ + AN+ +++ I +
Sbjct: 246 VELELKAEK-DNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLAT 304
Query: 342 QLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEV 392
Q FAD + D + R+ GG I ST + LG C L EE+
Sbjct: 305 QFFADRNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEM 355
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 472 bits (1217), Expect = e-165
Identities = 121/346 (34%), Positives = 187/346 (54%), Gaps = 9/346 (2%)
Query: 52 KHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATIL 111
K + + +S+ I + V++TLGP+GMDK++V G+ I+NDGATIL
Sbjct: 1 KEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVD---GRGKATISNDGATIL 57
Query: 112 KSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWR 171
K + V +PAAK LVD++K QD EVGDGTTSVT+LA+E LK + +++ LHPQ II +R
Sbjct: 58 KLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFR 117
Query: 172 RATDIARKALREASID-NGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRL 230
AT +A ++E ++ + + R+ L A T LSSK++SQ K +F+K+ VDAV+ L
Sbjct: 118 TATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMML 177
Query: 231 KGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIG----QHQPKRIENAKLLIANTPMDT 286
L I I K +GG LE+S L G K + QPK+ N + + N ++
Sbjct: 178 DDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELEL 237
Query: 287 DKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFAD 346
K + +RV ++ + AE + DK+EKI A V +++ I + Q FAD
Sbjct: 238 KAEK-DNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFAD 296
Query: 347 AGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEV 392
+ + ++R + GG I ++ + LG+C + EE
Sbjct: 297 RDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEET 342
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d*
Length = 528
Score = 460 bits (1186), Expect = e-160
Identities = 104/357 (29%), Positives = 189/357 (52%), Gaps = 18/357 (5%)
Query: 47 PVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITND 106
V +EK + R ++ I A ++ D ++++LGPKGMDK++ + + G++ I+ND
Sbjct: 4 KVPSNATFKNKEKPQEVRKANIIAARSVADAIRTSLGPKGMDKMIKT---SRGEIIISND 60
Query: 107 GATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTI 166
G TILK + + +P A++LV++S QD E GDGTTSV +L LL AE+L+++ +HP I
Sbjct: 61 GHTILKQMAILHPVARMLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTII 120
Query: 167 IAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDA 226
++ A + L E S RE L+ A T+LSSKI+SQ+ + + LAVD+
Sbjct: 121 ADSFQSAAKRSVDILLEMCHK---VSLSDREQLVRAASTSLSSKIVSQYSSFLAPLAVDS 177
Query: 227 VLRLKGSG----NLSAIQIIKKKGGCLEDSFLDEGFLLDKKI--GQHQPKRIENAKLLIA 280
VL++ +L+ I+++KK GG ++D+ + +G +L + P R E AK+ +
Sbjct: 178 VLKISDENSKNVDLNDIRLVKKVGGTIDDTEMIDGVVLTQTAIKSAGGPTRKEKAKIGLI 237
Query: 281 NTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVF-----INRQL 335
+ K + + V+ ++ ++ E+ + + +KI K NV I R
Sbjct: 238 QFQISPPKPDT-ENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDA 296
Query: 336 IYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEV 392
+ + + +M ++ + + IE L+ G + ++ + + +L DL+EE+
Sbjct: 297 VNDLALHFLSKLNIMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRLDSADLVEEI 353
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e*
Length = 562
Score = 457 bits (1179), Expect = e-158
Identities = 124/384 (32%), Positives = 202/384 (52%), Gaps = 19/384 (4%)
Query: 23 PTKPTLQILPKFFDSCFTFQVSLNPVRILKHEA--EEEKSEIARMSSFIGAIAIGDLVKS 80
P +P ++ +P ++ P I+K + + + A+ S + A ++ ++K+
Sbjct: 5 PQQPPME-MPDLSNAIVAQDEMGRPFIIVKDQGNKKRQHGLEAKKSHILAARSVASIIKT 63
Query: 81 TLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSKVQDDEVGDGTT 140
+LGP+G+DKIL+S G++ ITNDGATIL + +DN AK+LV +SK QDDE+GDGTT
Sbjct: 64 SLGPRGLDKILIS---PDGEITITNDGATILSQMELDNEIAKLLVQLSKSQDDEIGDGTT 120
Query: 141 SVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGL-NSEKFREDL 199
V VLAS LL A +LI + +HP I G+ A +A L E D N E FR+ L
Sbjct: 121 GVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFL 180
Query: 200 LNIARTTLSSKILSQHKEYFSKLAVDAVLRL----KGSGNLSAIQIIKKKGGCLEDSFLD 255
L A+T+L SKI+S+ + F+++AV+AV+ + + + I++ + GG + DS L
Sbjct: 181 LRAAKTSLGSKIVSKDHDRFAEMAVEAVINVMDKDRKDVDFDLIKMQGRVGGSISDSKLI 240
Query: 256 EGFLLDKKIGQHQ-------PKRIENAKLLIANTPMDTDKIKVFGSRVRVDSMAKIAELE 308
G +LDK Q + + KL I P + K K ++ + S+ + +L+
Sbjct: 241 NGVILDKDFSHPQMPKCVLPKEGSDGVKLAILTCPFEPPKPKT-KHKLDISSVEEYQKLQ 299
Query: 309 LAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVTG 368
E++K K+ ++ + K A+V I + + L + A+ +E +A+ T
Sbjct: 300 TYEQDKFKEMIDDVKKAGADVVICQWGFDDEANHLLLQNDLPAVRWVGGQELEHIAISTN 359
Query: 369 GEIVSTFDNPDQVKLGKCDLIEEV 392
G IV F + + KLG C I E
Sbjct: 360 GRIVPRFQDLSKDKLGTCSRIYEQ 383
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 529
Score = 455 bits (1172), Expect = e-158
Identities = 123/352 (34%), Positives = 208/352 (59%), Gaps = 20/352 (5%)
Query: 55 AEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSV 114
+ E R + + A +I ++VKS+LGP G+DK+LV + G V ITNDGATILK +
Sbjct: 3 GDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVD---DIGDVTITNDGATILKLL 59
Query: 115 GVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRAT 174
V++PAAK+L +++ +QD EVGDGTTSV ++A+ELLKNA++L+ Q++HP ++I+G+R A
Sbjct: 60 EVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLAC 119
Query: 175 DIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRLKGSG 234
A + + E I N E R+ L+N A+T++SSK++ + ++F+ L VDAVL +K +
Sbjct: 120 KEAVRYISENLIIN--TDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTD 177
Query: 235 -------NLSAIQIIKKKGGCLEDSFLDEGFLLDKKIG-QHQPKRIENAKLLIANTPMDT 286
+++I ++K G +S L G+ L+ +G Q PKRI NAK+ + +
Sbjct: 178 IRGQPRYPVNSINVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQK 237
Query: 287 DKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFAD 346
K+K+ G +V + K+ ++ E + K++++KIL ANV + I + + F +
Sbjct: 238 TKMKL-GVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVE 296
Query: 347 AGVMAIEHADFDGIERLALVTGGEIVSTFDNP------DQVKLGKCDLIEEV 392
AG MA+ ++R+A +G ++ST N + LG+ + + +
Sbjct: 297 AGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQE 348
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a*
Length = 559
Score = 455 bits (1174), Expect = e-158
Identities = 114/367 (31%), Positives = 199/367 (54%), Gaps = 20/367 (5%)
Query: 41 FQVSLNPVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQ 100
+ + L E+ + R + + +A+ ++VKS+LGP G+DK+LV + G
Sbjct: 3 QLFNNSRSDTLFLGGEKISGDDIRNQNVLATMAVANVVKSSLGPVGLDKMLVD---DIGD 59
Query: 101 VEITNDGATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQR 160
+TNDGATIL + V +PA KILV++++ QD E+GDGTTSV ++ASELLK A +L+ +
Sbjct: 60 FTVTNDGATILSLLDVQHPAGKILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNK 119
Query: 161 LHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFS 220
+HP TII G+R A A + + E + +E L+NIA+T++SSKI+ ++FS
Sbjct: 120 IHPTTIITGFRVALREAIRFINEVLSTS--VDTLGKETLINIAKTSMSSKIIGADSDFFS 177
Query: 221 KLAVDAVLRLKGSGN-------LSAIQIIKKKGGCLEDSFLDEGFLLDKKIG-QHQPKRI 272
+ VDA+L +K + + A+ ++K G +S L G+ L+ + Q PKRI
Sbjct: 178 NMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESLLVPGYALNCTVASQAMPKRI 237
Query: 273 ENAKLLIANTPMDTDKIKV-FGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFI 331
+ IA ++ K ++ G ++ +D ++ ++ E + ++V+KI+ A V +
Sbjct: 238 AGGNVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVL 297
Query: 332 NRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVK------LGK 385
+ I + + F +A +M + + + R+A TG +VS+ N + + LG
Sbjct: 298 TTKGIDDLCLKEFVEAKIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGL 357
Query: 386 CDLIEEV 392
CD + +
Sbjct: 358 CDEVVQA 364
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_B* 1e0r_B
Length = 543
Score = 455 bits (1172), Expect = e-158
Identities = 120/357 (33%), Positives = 209/357 (58%), Gaps = 14/357 (3%)
Query: 43 VSLNPVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVE 102
++ P+ ILK + E + A + AIAI + V+S+LGP+GMDK+LV + G +
Sbjct: 2 IAGQPIFILKEGTKRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVD---SLGDIV 58
Query: 103 ITNDGATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLH 162
ITNDG TILK + V++PAAK++V++SK QD VGDGTT+ ++A LL+ A+ LI+Q +H
Sbjct: 59 ITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVH 118
Query: 163 PQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKL 222
P I G+R A++ A++ + E S G + + LL +A+T+L+SK S K+ +++
Sbjct: 119 PTVISEGYRMASEEAKRVIDEISTKIGADE---KALLLKMAQTSLNSKSASVAKDKLAEI 175
Query: 223 AVDAVLRL------KGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKI-GQHQPKRIENA 275
+ +AV + K + IQ++KK+GG ++D+ L G ++DK+ P +++A
Sbjct: 176 SYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDA 235
Query: 276 KLLIANTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQL 335
K+ + + P++ K + F + +R++ + I + E+ +++ V+KI ANV I ++
Sbjct: 236 KIALLDAPLEIKKPE-FDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKG 294
Query: 336 IYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEV 392
I + + + AG+ A+ +++LA TG IVST D LG + +E+V
Sbjct: 295 IDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQV 351
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone,
NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Length = 553
Score = 455 bits (1172), Expect = e-157
Identities = 124/353 (35%), Positives = 206/353 (58%), Gaps = 14/353 (3%)
Query: 47 PVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITND 106
PV ILK + + A ++ A+ + +KST GP+GMDK+LV + G + ITND
Sbjct: 15 PVIILKEGSSRTYGKEAVRANIAAVKAVEEALKSTYGPRGMDKMLVD---SLGDITITND 71
Query: 107 GATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTI 166
GATIL + + +PAAK+LV ++K QD+E DGT + + + EL+K AE L+ + +HP I
Sbjct: 72 GATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTII 131
Query: 167 IAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDA 226
I+G+++A ++A + ++E + +N + L IA T+LSSK ++ +EY + + V A
Sbjct: 132 ISGYKKAEEVALQTIQELAQTVSIND---TDLLRKIAMTSLSSKAVAGAREYIADIVVKA 188
Query: 227 VLRL------KGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKI-GQHQPKRIENAKLLI 279
V ++ K +L IQI+KK GG + D+ L G ++DK++ PKR+ENAK+ +
Sbjct: 189 VTQVAELRGDKWYVDLDNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGMPKRLENAKIAL 248
Query: 280 ANTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNY 339
+ ++ +K ++ + +R++ ++ + E+ +K+KV+KIL ANV I ++ I
Sbjct: 249 IDASLEVEKPEL-DAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEV 307
Query: 340 PEQLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEV 392
+ A GV+A+ A +E+LA TGG +VS D + LG LIEE
Sbjct: 308 AQSYLAKKGVLAVRRAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEER 360
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit
arrangement, acetylation, ATP-binding, chaperone,
cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Length = 515
Score = 445 bits (1148), Expect = e-154
Identities = 117/344 (34%), Positives = 188/344 (54%), Gaps = 10/344 (2%)
Query: 54 EAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKS 113
A S + A A+ + +K++LGP G+DK++V G V +TNDGATIL
Sbjct: 2 RKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVD---KDGDVTVTNDGATILSM 58
Query: 114 VGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRA 173
+ VD+ AK++V++SK QDDE+GDGTT V VLA LL+ AE+L+D+ +HP I G+ +A
Sbjct: 59 MDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQA 118
Query: 174 TDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRL--- 230
IA + L + S ++ K E L+ A+TTL SK+++ +++AV+AVL +
Sbjct: 119 ARIAIEHLDKISDSVLVD-MKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADM 177
Query: 231 -KGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIG-QHQPKRIENAKLLIANTPMDTDK 288
+ + I++ K GG LED+ L +G ++DK PK++E+AK+ I P + K
Sbjct: 178 QRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPK 237
Query: 289 IKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAG 348
K ++ V S+ L+ EKEK ++ + +I + AN+ + + + L
Sbjct: 238 PKT-KHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQND 296
Query: 349 VMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEV 392
+ A+ IE +A+ TGG IV F KLG L++E+
Sbjct: 297 LPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEI 340
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 518
Score = 440 bits (1135), Expect = e-152
Identities = 112/347 (32%), Positives = 185/347 (53%), Gaps = 17/347 (4%)
Query: 56 EEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVG 115
+ +K R S+ A A+ D ++++LGPKGMDK++ G V ITNDGATILK +
Sbjct: 5 DRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQD---GKGDVTITNDGATILKQMQ 61
Query: 116 VDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATD 175
V +PAA++LV++SK QD E GDGTTSV ++A LL + KL+ + +HP I +++A +
Sbjct: 62 VLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALE 121
Query: 176 IARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRL----- 230
+ L + S RE LLN A T+L+SK++SQ+ S ++VDAV+++
Sbjct: 122 KGIEILTDMSRP---VELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPAT 178
Query: 231 KGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQPKRIENAKLLIANTPMDTDKIK 290
S +L I+I+KK GG ++D L EG +L +K+ R+E AK+ + + K
Sbjct: 179 ATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVANSGITRVEKAKIGLIQFCLSAPKTD 238
Query: 291 VFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVF-----INRQLIYNYPEQLFA 345
+ +++ V ++ + E+ + + V++I K NV I R + +
Sbjct: 239 M-DNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLN 297
Query: 346 DAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEV 392
+M ++ + + IE + G + V+ D LG +L EEV
Sbjct: 298 KMKIMVVKDIEREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEV 344
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_A*
Length = 545
Score = 440 bits (1135), Expect = e-152
Identities = 122/354 (34%), Positives = 196/354 (55%), Gaps = 16/354 (4%)
Query: 46 NPVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITN 105
P+ +LK + E+ + A+ ++ A AI D V++TLGPKGMDK+LV + G + I+N
Sbjct: 6 VPILVLKEGTQREQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVD---SIGDIIISN 62
Query: 106 DGATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQT 165
DGATILK + V++P AK++V++SK QD VGDGTT+ VL+ ELLK AE L+DQ +HP
Sbjct: 63 DGATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTV 122
Query: 166 IIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVD 225
I G+R A + ARK + E + + L IA T LS K ++ + L V
Sbjct: 123 ISNGYRLAVNEARKIIDEIAEKS-----TDDATLRKIALTALSGKNTGLSNDFLADLVVK 177
Query: 226 AVLRL------KGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKI-GQHQPKRIENAKLL 278
AV + K + + I++ KK GG + D+ G ++DK+ P ++NAK+
Sbjct: 178 AVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIA 237
Query: 279 IANTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYN 338
+ ++ ++ K ++ ++V++ +KI + E K VEKI K ANV + ++ I +
Sbjct: 238 LIDSALEIKKTEI-EAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDD 296
Query: 339 YPEQLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEV 392
+ A G+ A+ +E+LA TG +IV+ D+ LG+ + +EE
Sbjct: 297 VAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEER 350
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II
chaperonin, binding, chaperone; HET: ANP; 2.24A
{Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A*
3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A*
3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Length = 543
Score = 438 bits (1129), Expect = e-151
Identities = 110/351 (31%), Positives = 194/351 (55%), Gaps = 11/351 (3%)
Query: 46 NPVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITN 105
+L + A+ + + I + V+STLGPKGMDK+LV + G V +TN
Sbjct: 3 QQPGVLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVD---DLGDVVVTN 59
Query: 106 DGATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQT 165
DG TIL+ + V++PAAK+L++++K Q+ EVGDGTT+ V+A ELL+ AE+L+DQ +HP
Sbjct: 60 DGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTI 119
Query: 166 IIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVD 225
++ G++ A A++ L+ + + + +E L IA T+++ K + KE +++ V+
Sbjct: 120 VVKGYQAAAQKAQELLKTIACE---VGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVE 176
Query: 226 AVLRL---KGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKI-GQHQPKRIENAKLLIAN 281
AV + +G + I+I KK G ++D+ L +G L+DK+ PK++ +AK+ + N
Sbjct: 177 AVSAVVDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLN 236
Query: 282 TPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPE 341
++ + + + +R+ AK+ E E++ +KD V +I ANV ++ I + +
Sbjct: 237 CAIEIKETET-DAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQ 295
Query: 342 QLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEV 392
A G++A +E+LA TG +++ LG L+EE
Sbjct: 296 HYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEER 346
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A
{Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1q2v_A* 1q3s_A* 1q3r_A
Length = 548
Score = 397 bits (1023), Expect = e-135
Identities = 123/359 (34%), Positives = 201/359 (55%), Gaps = 14/359 (3%)
Query: 41 FQVSLNPVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQ 100
Q+S PV IL + A+ + + A I + V++TLGPKGMDK+LV + G
Sbjct: 2 AQLSGQPVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVD---SLGD 58
Query: 101 VEITNDGATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQR 160
+ +TND ATIL + + +PAAK++V+++K QD E GDGTT+ V+A ELL+ AE+L+DQ
Sbjct: 59 IVVTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQN 118
Query: 161 LHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFS 220
+HP I G+ A + A++ L E +I + E LL IA T+++ K HKE +
Sbjct: 119 IHPSIITKGYALAAEKAQEILDEIAIRVDPDD---EETLLKIAATSITGKNAESHKELLA 175
Query: 221 KLAVDAVLRLKGSG------NLSAIQIIKKKGGCLEDSFLDEGFLLDKKIG-QHQPKRIE 273
KLAV+AV ++ +L I+ KK G +E+S L G ++DK++ PKR+E
Sbjct: 176 KLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVE 235
Query: 274 NAKLLIANTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINR 333
NAK+ + N ++ K + +++ + S ++ E++ +KD V+ I + ANV +
Sbjct: 236 NAKIALINEALEVKKTET-DAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQ 294
Query: 334 QLIYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEV 392
+ I + + A G+MA+ +E+LA TG +IV+ + LG +++EE
Sbjct: 295 KGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEER 353
>3aq1_B Thermosome subunit; group II chaperonin, protein folding,
chaperone; 2.75A {Methanococcoides burtonii}
Length = 500
Score = 389 bits (1001), Expect = e-132
Identities = 103/311 (33%), Positives = 169/311 (54%), Gaps = 15/311 (4%)
Query: 90 ILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASEL 149
+LV + G + ITNDGATILK + + +PAAK++V++SK QD EVGDGTT+ VL+ EL
Sbjct: 1 MLVD---SMGDIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGEL 57
Query: 150 LKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSS 209
L AE+LI + +H I G+R A + R+ L +I + L+ IA T ++
Sbjct: 58 LSKAEELIMKGVHSTIISEGYRHAAEKCREILETITIAISPDD---EAALIKIAGTAITG 114
Query: 210 KILSQHKEYFSKLAVDAVLRLKGSGN-------LSAIQIIKKKGGCLEDSFLDEGFLLDK 262
K +KE S L V AV + L I+I K+ GG ++DS L +G ++DK
Sbjct: 115 KGAEAYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDK 174
Query: 263 KIG-QHQPKRIENAKLLIANTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEK 321
+ + P+++ENAK+L+ + P++ K +V S +++ S ++ E++ M++ EK
Sbjct: 175 ERSHPNMPEKVENAKILLLSCPVEFRKTEV-DSEIKITSPGQMQLFLDQEEKMMREMAEK 233
Query: 322 ILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQV 381
++ ANV ++ I + + AG+ A+ ++RL+ VTG I+ D
Sbjct: 234 VIASGANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTE 293
Query: 382 KLGKCDLIEEV 392
+G L+EE
Sbjct: 294 DVGTAGLVEEK 304
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f*
Length = 546
Score = 362 bits (931), Expect = e-121
Identities = 99/361 (27%), Positives = 181/361 (50%), Gaps = 20/361 (5%)
Query: 47 PVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITND 106
+++L +AE + + A + A + ++++ LGPKG K+LV +G +++T D
Sbjct: 2 SLQLLNPKAESLRRDAALKVNVTSAEGLQSVLETNLGPKGTLKMLVD---GAGNIKLTKD 58
Query: 107 GATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTI 166
G +L + + +P A ++ + QD+ GDGTT+V L ELL+ A + I + +HP+ I
Sbjct: 59 GKVLLTEMQIQSPTAVLIARAAAAQDEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRII 118
Query: 167 IAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDA 226
G+ A + K L E I N RE LL +AR++L +K+ + E + + DA
Sbjct: 119 TDGFEIARKESMKFLDEFKISKT-NLSNDREFLLQVARSSLLTKVDADLTEVLTPIVTDA 177
Query: 227 VLRLKGSG----NLSAIQIIKKKGGCLEDSFLDEGFLLDKKI-GQHQPKRIENAKLLIAN 281
VL + + +L ++I++ + +D+ +G +LD P R++NA +LI N
Sbjct: 178 VLSVYDAQADNLDLHMVEIMQMQHLSPKDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILN 237
Query: 282 TPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKIL----------KHNANVFI 331
++ +K +V S S + +L +E++ + K++KI+ V I
Sbjct: 238 VSLEYEKTEV-NSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVII 296
Query: 332 NRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEE 391
N++ I +FA ++A+ A +ERL LVTGGE ++ ++ LG L+ +
Sbjct: 297 NQKGIDPMSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQ 356
Query: 392 V 392
Sbjct: 357 E 357
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 517
Score = 351 bits (904), Expect = e-117
Identities = 98/352 (27%), Positives = 184/352 (52%), Gaps = 21/352 (5%)
Query: 54 EAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKS 113
+AE +++ A + A + D++++ LGPKG K+LVS +G +++T DG +L
Sbjct: 2 KAEVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVS---GAGDIKLTKDGNVLLHE 58
Query: 114 VGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRA 173
+ + +P A ++ ++ QDD GDGTTS ++ ELLK A+ I + LHP+ I G+ A
Sbjct: 59 MQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAA 118
Query: 174 TDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRLKGS 233
+ A + L + + ++ RE L+++ART+L +K+ ++ + ++ VD++L +K
Sbjct: 119 KEKALQFLEQVKVSKEMD----RETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQ 174
Query: 234 G---NLSAIQIIKKKGGCLEDSFLDEGFLLDKKIG-QHQPKRIENAKLLIANTPMDTDKI 289
+L ++I++ K D+ L G +LD KR+E+A +L N ++ +K
Sbjct: 175 DEPIDLFMVEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKT 234
Query: 290 KVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNAN---------VFINRQLIYNYP 340
+V S S + +L AE++ ++D+V+KI++ V IN++ I +
Sbjct: 235 EV-NSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFS 293
Query: 341 EQLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEV 392
A G++A+ A +ERL L GG +++ D+ + L + E
Sbjct: 294 LDALAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAGVYEY 345
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B
2bbn_B
Length = 590
Score = 344 bits (884), Expect = e-114
Identities = 90/362 (24%), Positives = 177/362 (48%), Gaps = 23/362 (6%)
Query: 47 PVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITND 106
PV + E A++S+ A A+ D++++ LGPK M K+L+ G + +TND
Sbjct: 4 PVVFMNASQERTTGRQAQISNITAAKAVADVIRTCLGPKAMLKMLLD---PMGGLVLTND 60
Query: 107 GATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKN-AEKLIDQRLHPQT 165
G IL+ + V +PAAK ++++S+ QD+EVGDGTT+V +LA E+L A LI++ +HP
Sbjct: 61 GHAILREIDVAHPAAKSMLELSRTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVI 120
Query: 166 IIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVD 225
II ++A A + +++ S + + + + + ++ +K + E +LA+D
Sbjct: 121 IIQALKKALTDALEVIKQVSKPVDVEN---DAAMKKLIQASIGTKYVIHWSEKMCELALD 177
Query: 226 AVLRLKGSGN-------------LSAIQIIKKKGGCLEDSFLDEGFLLDKKI-GQHQPKR 271
AV ++ +++ K GG + DS + +G LL+K + +
Sbjct: 178 AVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHPKMSRH 237
Query: 272 IENAKLLIANTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFI 331
IEN ++++ + P++ K + + + ++ + E+E+++ E+IL + I
Sbjct: 238 IENPRVVLLDCPLEYKKGES-QTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVI 296
Query: 332 NRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLG-KCDLIE 390
+ + + + G + R+A VTG IV+ ++ + +G C L +
Sbjct: 297 TEKGVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFK 356
Query: 391 EV 392
Sbjct: 357 VE 358
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 321 bits (825), Expect = e-106
Identities = 90/338 (26%), Positives = 176/338 (52%), Gaps = 15/338 (4%)
Query: 63 ARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAK 122
+ + A I D++++ LGPK M K+L+ G + +TNDG IL+ + V +PAAK
Sbjct: 10 VQSGNINAAKTIADIIRTCLGPKSMMKMLLD---PMGGIVMTNDGNAILREIQVQHPAAK 66
Query: 123 ILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALR 182
++++S+ QD+EVGDGTTSV +LA E+L AE ++Q++HP +I+ +R+A D L+
Sbjct: 67 SMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLK 126
Query: 183 EASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRLKGSGN------- 235
+ SI ++ R+ +LNI +++++K++S+ +A+DAV ++ N
Sbjct: 127 KISIPVDTSN---RDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDI 183
Query: 236 LSAIQIIKKKGGCLEDSFLDEGFLLDKKIG-QHQPKRIENAKLLIANTPMDTDKIKVFGS 294
++ K GG +EDS + G +++K + + I+N ++++ ++ ++ K + +
Sbjct: 184 KKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGES-QT 242
Query: 295 RVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEH 354
+ + + E+E ++ E I++ +V I + I + + A + AI
Sbjct: 243 DIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRR 302
Query: 355 ADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEV 392
R+A G IVS + + +G + E+
Sbjct: 303 VRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEI 340
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 512
Score = 315 bits (811), Expect = e-103
Identities = 77/333 (23%), Positives = 149/333 (44%), Gaps = 10/333 (3%)
Query: 63 ARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAK 122
A + + ++ GP GM+K++++ + ++ +TND ATIL+ + V +PAAK
Sbjct: 12 AVYRNIQACKELAQTTRTAYGPNGMNKMVIN---HLEKLFVTNDAATILRELEVQHPAAK 68
Query: 123 ILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALR 182
++V S +Q+ EVGDGT V V A LL+ AE+L+ L +I G+ A A + L
Sbjct: 69 MIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILP 128
Query: 183 EASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRL---KGSGNLSAI 239
+ + N +++ ++ T++ SK + + +KL A + + G N+ I
Sbjct: 129 DLVCCSAKNLRD-VDEVSSLLHTSVMSKQYGN-EVFLAKLIAQACVSIFPDSGHFNVDNI 186
Query: 240 QIIKKKGGCLEDSFLDEGFLLDKKIGQHQPKRIENAKLLIANTPMDTDKIKVFGSRVRVD 299
++ K G + S + G + K+ + +++AK+ + + P D + V +
Sbjct: 187 RVCKILGSGVHSSSVLHGMVFKKET-EGDVTSVKDAKIAVYSCPFDGMITET-KGTVLIK 244
Query: 300 SMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDG 359
S ++ E+ M +V+ I ANV + + + +M +
Sbjct: 245 SAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIMLVRLNSKWD 304
Query: 360 IERLALVTGGEIVSTFDNPDQVKLGKCDLIEEV 392
+ RL G + + P ++G CD +
Sbjct: 305 LRRLCKTVGATALPRLNPPVLEEMGHCDSVYLS 337
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h*
Length = 568
Score = 311 bits (799), Expect = e-101
Identities = 76/358 (21%), Positives = 157/358 (43%), Gaps = 18/358 (5%)
Query: 47 PVRILKHEAE-EEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITN 105
+ K ++ + S + + +++GP G +KI+V+ + G++ ITN
Sbjct: 10 NAGLFKQGYNSYSNADGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVN---HLGKIIITN 66
Query: 106 DGATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQT 165
D AT+L+ + + +PA K+LV ++ Q ++GDGT V +LA ELL +EKLI L
Sbjct: 67 DAATMLRELDIVHPAVKVLVMATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVE 126
Query: 166 IIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVD 225
II G+ A K L E + + + +LL + + +SSK + S+L +
Sbjct: 127 IIQGYNMARKFTLKELDEMVVGEITDKND-KNELLKMIKPVISSKKYGSE-DILSELVSE 184
Query: 226 AVLRLKGSG---------NLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQH--QPKRIEN 274
AV + N+ +I+++K GG L +S + +G + +++ H +
Sbjct: 185 AVSHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTVIKGMVFNREPEGHVKSLSEDKK 244
Query: 275 AKLLIANTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQ 334
K+ + P+D + V + + ++ + E++++ +++I +
Sbjct: 245 HKVAVFTCPLDIANTET-KGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGA 303
Query: 335 LIYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEV 392
+ G++ ++ + RL V G + P +LG + ++ +
Sbjct: 304 GVGELALHYLNRYGILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTM 361
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin,
tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Length = 178
Score = 103 bits (259), Expect = 2e-26
Identities = 28/145 (19%), Positives = 62/145 (42%), Gaps = 3/145 (2%)
Query: 249 LEDSFLDEGFLLDKKIG-QHQPKRIENAKLLIANTPMDTDKIKVFGSRVRVDSMAKIAEL 307
+EDS + G +++K + + I+N ++++ ++ ++ K + + + + +
Sbjct: 1 MEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGES-QTDIEITREEDFTRI 59
Query: 308 ELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVT 367
E+E + E I++ +V I + I + + A V AI R+A
Sbjct: 60 LQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARAC 119
Query: 368 GGEIVSTFDNPDQVKLGK-CDLIEE 391
G IVS + + +G L+E
Sbjct: 120 GARIVSRPEELREDDVGTGAGLLEI 144
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI
ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP:
c.8.5.2 PDB: 1asx_A
Length = 159
Score = 101 bits (254), Expect = 7e-26
Identities = 37/138 (26%), Positives = 71/138 (51%), Gaps = 2/138 (1%)
Query: 256 EGFLLDKKIG-QHQPKRIENAKLLIANTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEK 314
G ++DK+ P ++NAK+ + ++ ++ K ++ ++V++ +KI + E
Sbjct: 2 SGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEI-EAKVQISDPSKIQDFLNQETNT 60
Query: 315 MKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEIVST 374
K VEKI K ANV + ++ I + + A G+ A+ +E+LA TG +IV+
Sbjct: 61 FKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTD 120
Query: 375 FDNPDQVKLGKCDLIEEV 392
D+ LG+ + +EE
Sbjct: 121 LDDLTPSVLGEAETVEER 138
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A
{Mycobacterium tuberculosis} PDB: 1sjp_A
Length = 546
Score = 58.3 bits (142), Expect = 2e-09
Identities = 42/132 (31%), Positives = 70/132 (53%), Gaps = 7/132 (5%)
Query: 60 SEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNP 119
E AR G A+ D VK TLGPKG + V + + G ITNDG +I K + +++P
Sbjct: 8 DEEARRGLERGLNALADAVKVTLGPKGRN---VVLEKKWGAPTITNDGVSIAKEIELEDP 64
Query: 120 ----AAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATD 175
A+++ +++K DD GDGTT+ TVLA L++ + + +P + G +A +
Sbjct: 65 YEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVE 124
Query: 176 IARKALREASID 187
+ L + + +
Sbjct: 125 KVTETLLKGAKE 136
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1
Length = 545
Score = 58.0 bits (141), Expect = 2e-09
Identities = 38/130 (29%), Positives = 68/130 (52%), Gaps = 7/130 (5%)
Query: 60 SEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNP 119
+ AR G + D VK TLGPKG + V + ++ G IT DG ++ K + + +
Sbjct: 9 NSDARDRMLKGVNILADAVKVTLGPKGRN---VVIDKSFGAPRITKDGVSVAKEIELSDK 65
Query: 120 ----AAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATD 175
A+++ +++ +DE GDGTT+ TVLA +++ K + ++P + G AT
Sbjct: 66 FENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATA 125
Query: 176 IARKALREAS 185
+A++ A+
Sbjct: 126 KVVEAIKSAA 135
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding,
ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Length = 543
Score = 57.2 bits (139), Expect = 4e-09
Identities = 39/132 (29%), Positives = 69/132 (52%), Gaps = 7/132 (5%)
Query: 60 SEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNP 119
E AR + G A+ + VK TLGP+G + V + + G IT DG T+ K V +++
Sbjct: 8 DEAARRALERGVNAVANAVKVTLGPRGRN---VVLEKKFGSPTITKDGVTVAKEVELEDH 64
Query: 120 ----AAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATD 175
A++L +++ +D GDGTT+ TVLA +++ K + +P + G +A +
Sbjct: 65 LENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVE 124
Query: 176 IARKALREASID 187
A + ++ +I
Sbjct: 125 AAVEKIKALAIP 136
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone;
HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1
c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A
1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A
3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A
3cau_A ...
Length = 547
Score = 56.8 bits (138), Expect = 5e-09
Identities = 35/130 (26%), Positives = 66/130 (50%), Gaps = 7/130 (5%)
Query: 60 SEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNP 119
A + G + D VK TLGPKG + V + ++ G IT DG ++ + + +++
Sbjct: 8 GNDAGVKMLRGVNVLADAVKVTLGPKGRN---VVLDKSFGAPTITKDGVSVAREIELEDK 64
Query: 120 ----AAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATD 175
A+++ +++ +D GDGTT+ TVLA ++ K + ++P + G +A
Sbjct: 65 FENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVT 124
Query: 176 IARKALREAS 185
+A + L+ S
Sbjct: 125 VAVEELKALS 134
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 4e-08
Identities = 54/422 (12%), Positives = 125/422 (29%), Gaps = 142/422 (33%)
Query: 28 LQILPKFFDSCFTFQVS-LNPVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKG 86
LQ L D +T + + +++ H + E + + + + + V++
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 87 MD---KILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSKV-QDDEVGDGTTSV 142
+ KIL+ T + + L S DE
Sbjct: 262 FNLSCKILL----------TTRF-KQVTDFLSAATTTHISLDHHSMTLTPDE------VK 304
Query: 143 TVLASELLKNAEKLIDQ--RLHPQTI--IA-----------GWRRATDIARKALREASID 187
++L L + L + +P+ + IA W+ + E+S++
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 188 NGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAV---DA-----VLR---------- 229
L ++R+ F +L+V A +L
Sbjct: 365 V-LEPAEYRK--------------------MFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 230 ----LKGSGNLSAIQIIKKKGGC-LEDSFLDEGFLLDKKIGQHQ--------PKRIENAK 276
+ S ++ K+ + +L+ L+ + H+ PK ++
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 277 LLIANTPMD----------------TDKIKVF----------GSRVRVDSMAK------- 303
L+ +D +++ +F ++R DS A
Sbjct: 464 LIP--PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 304 --IAELELAEK---------EKMKDKVEKIL-KHNANVFINR-----QLIYNYP-EQLFA 345
+ +L+ + E++ + + L K N+ ++ ++ E +F
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Query: 346 DA 347
+A
Sbjct: 582 EA 583
Score = 47.2 bits (111), Expect = 8e-06
Identities = 75/476 (15%), Positives = 140/476 (29%), Gaps = 141/476 (29%)
Query: 12 HTYGGQILPTIPTKPTLQILPKF---FDSCFTFQVSLNPVRILKHEAEE---EKSEIARM 65
+ Y IL F FD C Q + + K E + K ++
Sbjct: 16 YQYK-DILSVF--------EDAFVDNFD-CKDVQDMPKSI-LSKEEIDHIIMSKDAVSGT 64
Query: 66 SSFIGAI------AIGDLVKSTL----------------GPKGMDKILVSMGRNSGQVEI 103
+ + V+ L P M ++ + R+ +
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ-RD----RL 119
Query: 104 TNDGATILK-SVGVDNPAAKILVDMSKVQDDE----VGDGTTSVTVLASELLKN------ 152
ND K +V P K+ + +++ + G + T +A ++ +
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 153 ---------------AEKLID--QRLHPQTIIAGWRRATDIARKALREASIDNGLN---- 191
E +++ Q+L Q R+ + LR SI L
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 192 SEKFREDLL--------NIART-TLSSKIL--SQHKEYFSKLAVDAVLRLKGSGNLSAIQ 240
S+ + LL LS KIL ++ K+ D + + + I
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ-----VTDFL----SAATTTHIS 290
Query: 241 IIKKKGGCLEDSFLDEGFLLDKKIGQHQPKRIENAKLLIANTPMDTDKIKVFGSRVRVDS 300
+ D LL K + +P+ + L P ++ + +R D
Sbjct: 291 LDHHSMTLTPDEVKS---LLLKYLD-CRPQDLPREVLTTN--PR---RLSIIAESIR-DG 340
Query: 301 MAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAI--EHADFD 358
+A + +K+ +E L L ++F +++ A
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLN---------VLEPAEYRKMFDR---LSVFPPSAH-- 386
Query: 359 GIERLALVTGGEIV---STFDNPDQV--KLGKCDLIEEVCLWTKNVTGPTVSTYSI 409
I + L ++ + V KL K L+E+ K ST SI
Sbjct: 387 -IPTILL----SLIWFDVIKSDVMVVVNKLHKYSLVEK---QPKE------STISI 428
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 3e-07
Identities = 51/316 (16%), Positives = 92/316 (29%), Gaps = 117/316 (37%)
Query: 131 QDDEVGDG----TTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASI 186
Q E G G TS A ++ A+ G+ DI +I
Sbjct: 1627 Q--EQGMGMDLYKTSKA--AQDVWNRADNHFKDTY-------GFS-ILDIVINNPVNLTI 1674
Query: 187 DN-GLNSEKFREDLLNIARTTL------SSKILSQHKEYFSKL----------------- 222
G ++ RE+ + T+ + KI + E+ +
Sbjct: 1675 HFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP 1734
Query: 223 AVDAVLRLKGSGNLSAIQIIKKKGGCLEDSF-----LDE--------GFLLDKKIGQHQP 269
A+ + +A + +K KG D+ L E +
Sbjct: 1735 ALTLM-------EKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVM---------- 1777
Query: 270 KRIENA-KLL------IANT-PMDTDKIKVFG-SRVRVDSMAKIAELELAEKEKMKDKVE 320
IE+ +++ + P D +G + +A +E ++ VE
Sbjct: 1778 -SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAAS-----FSQEALQYVVE 1831
Query: 321 KILKHN------ANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEIVST 374
++ K N YN Q + AG D ++ + V
Sbjct: 1832 RVGKRTGWLVEIVN--------YNVENQQYVAAG-------DLRALDTVTNVL------- 1869
Query: 375 FDNPDQVKLGKCDLIE 390
+ +KL K D+IE
Sbjct: 1870 ----NFIKLQKIDIIE 1881
Score = 46.2 bits (109), Expect = 2e-05
Identities = 42/225 (18%), Positives = 68/225 (30%), Gaps = 67/225 (29%)
Query: 5 ITRTSRFHTYGGQ---ILPTIPTKPTLQILPKFFDSCFTFQVSLNPVRILKHEAEEEK-- 59
I S +T+ + + T T+P L + LK +
Sbjct: 1710 INEHSTSYTFRSEKGLLSATQFTQPAL----------TL--MEKAAFEDLKSKGLIPADA 1757
Query: 60 -----S--EIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQ-----VEITNDG 107
S E A ++S ++I LV+ +V R G V G
Sbjct: 1758 TFAGHSLGEYAALASLADVMSIESLVE-----------VVFY-R--GMTMQVAVPRDELG 1803
Query: 108 ATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLK----NAEKLIDQRLHP 163
+ + + NP ++ S+ V + T L++ N E +Q
Sbjct: 1804 RSNYGMIAI-NPG-RVAASFSQEALQYVVERVGKRT---GWLVEIVNYNVE---NQ---- 1851
Query: 164 QTIIAGWRRATDIARKALREA---SIDNG-----LNSEKFREDLL 200
Q + AG RA D L ID L+ E+ L
Sbjct: 1852 QYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 44.7 bits (105), Expect = 5e-05
Identities = 47/280 (16%), Positives = 82/280 (29%), Gaps = 97/280 (34%)
Query: 171 RRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQH---------KEYFSK 221
+ + A+ A DN + + +L+I + L+ H +E +S
Sbjct: 1636 YKTSKAAQDVWNRA--DNHF-KDTYGFSILDIVIN--NPVNLTIHFGGEKGKRIRENYSA 1690
Query: 222 LAVDAVLRLKGSGNLSAIQIIKKKGGCLED-SFLDEGFLLDKKIGQH-QPKRIENAKLLI 279
+ + ++ G L +I K+ +F E LL Q QP A L+
Sbjct: 1691 MIFETIV----DGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT--QFTQP-----ALTLM 1739
Query: 280 ANTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKH-----NANVFINRQ 334
A +L+ + + H A
Sbjct: 1740 --------------------EKAAFEDLK---SKGLIPADATFAGHSLGEYAA------- 1769
Query: 335 LIYNYPEQLFADAGVMAIEHADFDGIE----R-LAL---VTGGEI-VSTFD----NPDQV 381
L + A VM+IE +E R + + V E+ S + NP +V
Sbjct: 1770 --------LASLADVMSIE----SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRV 1817
Query: 382 KLGKC-DLIEEVCLWTKNVTGPTVS---------TYSISG 411
+ ++ V TG V Y +G
Sbjct: 1818 AASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAG 1857
Score = 44.3 bits (104), Expect = 7e-05
Identities = 76/491 (15%), Positives = 132/491 (26%), Gaps = 161/491 (32%)
Query: 12 HTYGGQILPTIPTKP--TLQILPKFFDSCFTFQVSLNPVR--ILKHEAEEEKSEIARMSS 67
H ++L T T +++ + + + + L E +++ ++
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL--VAI 159
Query: 68 FIG------------------AIAIGDLVKSTLGPKGMDKILVSMGRNSGQVE------- 102
F G + +GDL+K + L + R + E
Sbjct: 160 FGGQGNTDDYFEELRDLYQTYHVLVGDLIKF------SAETLSELIRTTLDAEKVFTQGL 213
Query: 103 -----ITNDGAT----ILKSVGVDNP------AAKILVDMSKVQD---DEVGDGTTSVTV 144
+ N T L S+ + P A +V +K+ E+ T
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV-TAKLLGFTPGELRSYLKGATG 272
Query: 145 LASELLKNAEKLIDQRLHPQTIIAG---WRRATDIARKALREA-SIDNGLNS-EKFREDL 199
+ L+ A IA W RKA+ I G+ E +
Sbjct: 273 HSQGLV-TA-----------VAIAETDSWESFFVSVRKAITVLFFI--GVRCYEAYP--- 315
Query: 200 LNIARTTLSSKILSQHKEYFSKLAVDAVLRLKGSGNLS---AIQIIKKKGGCLEDSFLDE 256
T+L IL E G S +I L + +
Sbjct: 316 ----NTSLPPSILEDSLE-------------NNEGVPSPMLSI-----SN--LTQEQVQD 351
Query: 257 GFLLDKKIGQHQPKRIENAKLLIA--NTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEK 314
++ K H P ++ I+ N + V G + + A
Sbjct: 352 --YVN-KTNSHLP---AGKQVEISLVNGA---KNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 315 MKDKV----EKILKHNANVFINRQLIYNYP--EQLFADAGVMAIEHADFDGIE----RLA 364
+ ++ K+ F NR L P L A + + + + +
Sbjct: 403 DQSRIPFSERKL------KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 365 L-VTGGEIVSTFDNPDQVKLGK------CDLI-EEVCLWTKNVT---------GPTVSTY 407
+ V TFD D L D I W GP
Sbjct: 457 IPV-----YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPG---- 507
Query: 408 SISGFRYIGIL 418
SG +G+L
Sbjct: 508 GASG---LGVL 515
Score = 37.7 bits (87), Expect = 0.008
Identities = 23/134 (17%), Positives = 41/134 (30%), Gaps = 41/134 (30%)
Query: 147 SELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREA--SIDNGLNSEKFREDLL-NIA 203
S LL A LI++ L + K ++ +G + + I
Sbjct: 429 SHLLVPASDLINKDLVKNNV--------SFNAKDIQIPVYDTFDGSDLRVLSGSISERIV 480
Query: 204 R--TTL-----------SSKILSQHKEYFSKLAVDAVLRL-----KGSGNLSAIQIIKKK 245
L ++ IL F + L G+G +++I
Sbjct: 481 DCIIRLPVKWETTTQFKATHILD-----FGPGGASGLGVLTHRNKDGTG----VRVI--V 529
Query: 246 GGCLEDSFLDE-GF 258
G L+ + D+ GF
Sbjct: 530 AGTLDINPDDDYGF 543
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold,
oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis}
PDB: 3f4r_A* 3f4t_A*
Length = 226
Score = 30.6 bits (69), Expect = 0.75
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 170 WRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDA 226
W L+ + + L + F + + + + KI++ +KL + A
Sbjct: 118 WNYYNLSDLTLLQRIAALSNLKQDAFNQCIND---KKIMDKIVNDKSLAINKLGITA 171
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 30.9 bits (69), Expect = 0.78
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 344 FADAGVMAIEHADFDGIERLALVTGGEIVS 373
+ D+ + +I D +G R ++ + ++
Sbjct: 556 WVDSKLHSISSIDVNGGNRKTILEDEKRLA 585
>3p1v_A Metallo-endopeptidase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-biology; HET: MSE; 1.93A {Bacteroides ovatus atcc
8483} PDB: 4df9_A*
Length = 407
Score = 30.8 bits (69), Expect = 0.85
Identities = 25/173 (14%), Positives = 52/173 (30%), Gaps = 33/173 (19%)
Query: 137 DGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIA--RKALREASIDNGLN--- 191
V V K + P I+ R + I R L+ + + ++
Sbjct: 103 KQPVEVEVTLYSPRKKTMATYKHIVRPDDILIHKRGVSHITPHRYMLQSGNEKDCIDVAI 162
Query: 192 ---------SEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRLKGSGNLSAIQII 242
+ F +D + S + K F+ +AV + G
Sbjct: 163 LAEGYTEKEMDVFYQDAQRTCESLFSYEPFRSMKSKFNIVAVASPSTDSGVSV------- 215
Query: 243 KKKGGCLEDSFLDEGF---LLDKKIGQHQPKRIENAK--------LLIANTPM 284
+ + + + F D+ + + K + NA +++ANT +
Sbjct: 216 -PRENQWKQTAVHSHFDTFYSDRYLTTSRVKSVHNALAGIPYEHIIILANTDV 267
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 30.6 bits (68), Expect = 1.2
Identities = 6/41 (14%), Positives = 17/41 (41%), Gaps = 6/41 (14%)
Query: 333 RQLIYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEIVS 373
+Y + D+ + +I D +G R ++ + ++
Sbjct: 569 SGRLY------WVDSKLHSISSIDVNGGNRKTILEDEKRLA 603
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 30.2 bits (67), Expect = 1.4
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 344 FADAGVMAIEHADFDGIERLALVTGGEIVS 373
+ D+ + +I D +G R ++ + ++
Sbjct: 262 WVDSKLHSISSIDVNGGNRKTILEDEKRLA 291
>1up8_A Vanadium-dependent bromoperoxidase 1; haloperoxidase, vanadate;
2.20A {Corallina pilulifera} SCOP: a.111.1.2 PDB: 1qhb_A
Length = 598
Score = 29.9 bits (66), Expect = 2.1
Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 5/91 (5%)
Query: 98 SGQVEITNDGATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLI 157
SG + TILK+ + ++ K +D V +A EL K A+ +
Sbjct: 485 SGHAVVAGACVTILKAFFDSGIEIDQVFEVDKDEDKLVKSSFKGTLTVAGELNKLADNIA 544
Query: 158 DQRLH-----PQTIIAGWRRATDIARKALRE 183
R +A L E
Sbjct: 545 IGRNMAGVHYFSDQFESLLLGEQVAIGILEE 575
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 2.1
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 297 RVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQL 343
R + ++ EL+ A K ++ EK K + EQ+
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQS------EQV 131
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 2.2
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 12/33 (36%)
Query: 58 EKSEIARMSSFIG--------AIAIGDLVKSTL 82
EK + ++ + + A+AI K+T+
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAI----KATM 46
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 29.0 bits (64), Expect = 3.0
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 8/68 (11%)
Query: 344 FADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEVCLWTKNVTGPT 403
+ D G IE +G R L++ + P + L D + WT P
Sbjct: 408 WTDTGTDRIEVTRLNGTMRKILISED-----LEEPRAIVL---DPMVGYMYWTDWGEIPK 459
Query: 404 VSTYSISG 411
+ ++ G
Sbjct: 460 IERAALDG 467
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 28.2 bits (62), Expect = 5.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 344 FADAGVMAIEHADFDGIERLALVTGG 369
+ DA IE A+ DG R A+++ G
Sbjct: 262 WVDAKHHVIERANLDGSHRKAVISQG 287
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 27.7 bits (61), Expect = 7.6
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 344 FADAGVMAIEHADFDGIERLALVTGG 369
+ D+ + + AD G++R L
Sbjct: 93 WTDSVLGTVSVADTKGVKRKTLFREN 118
>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel,
oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A
{Trypanosoma cruzi} PDB: 3atz_A*
Length = 379
Score = 27.5 bits (62), Expect = 7.7
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 342 QLFADAGVMAIEHADFDGIE 361
LF + AI A FDG+E
Sbjct: 174 PLFVEGAKNAIFKAGFDGVE 193
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.377
Gapped
Lambda K H
0.267 0.0502 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,399,127
Number of extensions: 413288
Number of successful extensions: 999
Number of sequences better than 10.0: 1
Number of HSP's gapped: 869
Number of HSP's successfully gapped: 53
Length of query: 418
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 322
Effective length of database: 4,021,377
Effective search space: 1294883394
Effective search space used: 1294883394
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.7 bits)