RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17549
(418 letters)
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain
{Archaeon Thermoplasma acidophilum, alpha chain [TaxId:
2303]}
Length = 245
Score = 125 bits (315), Expect = 3e-34
Identities = 77/208 (37%), Positives = 115/208 (55%), Gaps = 6/208 (2%)
Query: 58 EKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVD 117
E+ + A+ ++ A AI D V++TLGPKGMDK+LV + G + I+NDGATILK + V+
Sbjct: 2 EQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVD---SIGDIIISNDGATILKEMDVE 58
Query: 118 NPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIA 177
+P AK++V++SK QD VGDGTT+ VL+ ELLK AE L+DQ +HP I G+R A + A
Sbjct: 59 HPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEA 118
Query: 178 RKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHK---EYFSKLAVDAVLRLKGSG 234
RK + E + + L E L + ++ + + + E F+K L +
Sbjct: 119 RKIIDEIAEKSFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENA 178
Query: 235 NLSAIQIIKKKGGCLEDSFLDEGFLLDK 262
+ I + K E + G LD
Sbjct: 179 GIDPINTLIKLKADDEKGRISVGVDLDN 206
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain
{Archaeon Thermococcus sp. ks-1, alpha chain [TaxId:
79679]}
Length = 258
Score = 118 bits (296), Expect = 2e-31
Identities = 60/149 (40%), Positives = 91/149 (61%), Gaps = 3/149 (2%)
Query: 48 VRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDG 107
V IL + A+ + + A I + V++TLGPKGMDK+LV + G + +TND
Sbjct: 1 VVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVD---SLGDIVVTNDC 57
Query: 108 ATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTII 167
ATIL + + +PAAK++V+++K QD E GDGTT+ V+A ELL+ AE+L+DQ +HP I
Sbjct: 58 ATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIT 117
Query: 168 AGWRRATDIARKALREASIDNGLNSEKFR 196
G+ A + A++ L E +I L +
Sbjct: 118 KGYALAAEKAQEILDEIAIRAVLPAGGAP 146
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon
Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}
Length = 153
Score = 111 bits (280), Expect = 3e-30
Identities = 39/145 (26%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Query: 257 GFLLDKKI-GQHQPKRIENAKLLIANTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKM 315
G ++DK++ PKR+ENAK+ + N ++ K + +++ + S ++ E++ +
Sbjct: 2 GVVIDKEVVHPRMPKRVENAKIALINEALEVKKTET-DAKINITSPDQLMSFLEQEEKML 60
Query: 316 KDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEIVSTF 375
KD V+ I + ANV ++ I + + A G+MA+ +E+LA TG +IV+
Sbjct: 61 KDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNV 120
Query: 376 DNPDQVKLGKCDLIEEVCLWTKNVT 400
+ LG +++EE L +N+
Sbjct: 121 KDLTPEDLGYAEVVEERKLAGENMI 145
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain
{Archaeon Thermoplasma acidophilum, beta chain [TaxId:
2303]}
Length = 243
Score = 114 bits (285), Expect = 6e-30
Identities = 61/169 (36%), Positives = 98/169 (57%), Gaps = 3/169 (1%)
Query: 63 ARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAK 122
A + AIAI + V+S+LGP+GMDK+LV + G + ITNDG TILK + V++PAAK
Sbjct: 3 AMKENIEAAIAISNSVRSSLGPRGMDKMLVD---SLGDIVITNDGVTILKEMDVEHPAAK 59
Query: 123 ILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALR 182
++V++SK QD VGDGTT+ ++A LL+ A+ LI+Q +HP I G+R A++ A++ +
Sbjct: 60 MMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVID 119
Query: 183 EASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRLK 231
E S + R ++ + ++ + DA+ +
Sbjct: 120 EISTKIAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIP 168
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma
acidophilum, alpha chain [TaxId: 2303]}
Length = 152
Score = 109 bits (273), Expect = 3e-29
Identities = 38/146 (26%), Positives = 74/146 (50%), Gaps = 2/146 (1%)
Query: 256 EGFLLDKKI-GQHQPKRIENAKLLIANTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEK 314
G ++DK+ P ++NAK+ + ++ ++ K ++ ++V++ +KI + E
Sbjct: 2 SGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEI-EAKVQISDPSKIQDFLNQETNT 60
Query: 315 MKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEIVST 374
K VEKI K ANV + ++ I + + A G+ A+ +E+LA TG +IV+
Sbjct: 61 FKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTD 120
Query: 375 FDNPDQVKLGKCDLIEEVCLWTKNVT 400
D+ LG+ + +EE + +T
Sbjct: 121 LDDLTPSVLGEAETVEERKIGDDRMT 146
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon
Thermoplasma acidophilum, beta chain [TaxId: 2303]}
Length = 152
Score = 107 bits (269), Expect = 1e-28
Identities = 36/145 (24%), Positives = 74/145 (51%), Gaps = 2/145 (1%)
Query: 257 GFLLDKKI-GQHQPKRIENAKLLIANTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKM 315
G ++DK+ P +++AK+ + + P++ K + + +R++ + I + E+ +
Sbjct: 1 GIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEF-DTNLRIEDPSMIQKFLAQEENML 59
Query: 316 KDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEIVSTF 375
++ V+KI ANV I ++ I + + + AG+ A+ +++LA TG IVST
Sbjct: 60 REMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTI 119
Query: 376 DNPDQVKLGKCDLIEEVCLWTKNVT 400
D LG + +E+V + +T
Sbjct: 120 DEISSSDLGTAERVEQVKVGEDYMT 144
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus),
gamma chain [TaxId: 10090]}
Length = 168
Score = 97.8 bits (243), Expect = 8e-25
Identities = 26/143 (18%), Positives = 60/143 (41%), Gaps = 2/143 (1%)
Query: 251 DSFLDEGFLLDKKI-GQHQPKRIENAKLLIANTPMDTDKIKVFGSRVRVDSMAKIAELEL 309
DS + G +++K + + I+N ++++ ++ ++ K + + + + +
Sbjct: 1 DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGES-QTDIEITREEDFTRILQ 59
Query: 310 AEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVTGG 369
E+E + E I++ +V I + I + + A V AI R+A G
Sbjct: 60 MEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGA 119
Query: 370 EIVSTFDNPDQVKLGKCDLIEEV 392
IVS + + +G + E+
Sbjct: 120 RIVSRPEELREDDVGTGAGLLEI 142
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia
coli [TaxId: 562]}
Length = 252
Score = 94.5 bits (234), Expect = 8e-23
Identities = 49/243 (20%), Positives = 97/243 (39%), Gaps = 19/243 (7%)
Query: 60 SEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVD-- 117
A + G + D VK TLGPKG + +L G IT DG ++ + + ++
Sbjct: 8 GNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSF---GAPTITKDGVSVAREIELEDK 64
Query: 118 --NPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATD 175
N A+++ +++ +D GDGTT+ TVLA ++ K + ++P + G +A
Sbjct: 65 FENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVT 124
Query: 176 IARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRL----- 230
+A + L+ S+ + + + A++A LR
Sbjct: 125 VAVEELKALSVGVVAGGGVALIRVASKLADLRGQNADQNVGIKVALRAMEAPLRQIVLNC 184
Query: 231 KGSGNLSAIQIIKKKGGCLEDSFLD-EGFLLDKKIGQHQPKRIENAKL----LIANTPMD 285
++ A + G ++ + G ++D G P ++ + L +A +
Sbjct: 185 GEEPSVVANTVKGGDGNYGYNAATEEYGNMIDM--GILDPTKVTRSALQYAASVAGLMIT 242
Query: 286 TDK 288
T+
Sbjct: 243 TEC 245
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain
{Archaeon Thermoplasma acidophilum, beta chain [TaxId:
2303]}
Length = 107
Score = 80.7 bits (199), Expect = 2e-19
Identities = 23/102 (22%), Positives = 50/102 (49%), Gaps = 12/102 (11%)
Query: 196 REDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRL------KGSGNLSAIQIIKKKGGCL 249
+ LL +A+T+L+SK S K+ ++++ +AV + K + IQ++KK+GG +
Sbjct: 5 KALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAI 64
Query: 250 EDSFLDEGFLLDK------KIGQHQPKRIENAKLLIANTPMD 285
+D+ L + + + I ++ ++A+ D
Sbjct: 65 DDTQLINKAVSILVRGETEHVVDEMERSITDSLHVVASALED 106
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus
denitrificans [TaxId: 266]}
Length = 252
Score = 84.1 bits (207), Expect = 4e-19
Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 7/151 (4%)
Query: 63 ARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVD----N 118
AR G + D VK TLGPKG + ++ G IT DG ++ K + + N
Sbjct: 11 ARDRMLKGVNILADAVKVTLGPKGRNVVIDKSF---GAPRITKDGVSVAKEIELSDKFEN 67
Query: 119 PAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIAR 178
A+++ +++ +DE GDGTT+ TVLA +++ K + ++P + G AT
Sbjct: 68 MGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVV 127
Query: 179 KALREASIDNGLNSEKFREDLLNIARTTLSS 209
+A++ A+ + + +
Sbjct: 128 EAIKSAARGIVVGGGVALVQGAKVLEGLSGA 158
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain
{Archaeon Thermococcus sp. ks-1, alpha chain [TaxId:
79679]}
Length = 107
Score = 79.9 bits (197), Expect = 5e-19
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 196 REDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRL------KGSGNLSAIQIIKKKGGCL 249
E LL IA T+++ K HKE +KLAV+AV ++ K +L I+ KK G +
Sbjct: 6 EETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGV 65
Query: 250 EDSFLDEGFLLDKKIGQHQPKRIENAKLLIANTPMD 285
E+S L + + + G I+ + + +
Sbjct: 66 EESELVKAVTILIRGG--TEHVIDEVERALEDAVKV 99
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain
{Archaeon Thermoplasma acidophilum, alpha chain [TaxId:
2303]}
Length = 105
Score = 74.2 bits (182), Expect = 5e-17
Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 8/99 (8%)
Query: 196 REDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRL------KGSGNLSAIQIIKKKGGCL 249
L IA T LS K ++ + L V AV + K + + I++ KK GG +
Sbjct: 3 DATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSV 62
Query: 250 EDSFLDEGFLLDKKIGQHQPKRIENAKLLIANTPMDTDK 288
D+ + + G + + + +
Sbjct: 63 NDTQFISAVSILIRGG--TDHVVSEVERALNDAIRVVAI 99
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus
thermophilus [TaxId: 274]}
Length = 255
Score = 75.7 bits (185), Expect = 3e-16
Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 60 SEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVD-- 117
E AR + G A+ + VK TLGP+G + +L G IT DG T+ K V ++
Sbjct: 7 DEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKF---GSPTITKDGVTVAKEVELEDH 63
Query: 118 --NPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATD 175
N A++L +++ +D GDGTT+ TVLA +++ K + +P + G +A +
Sbjct: 64 LENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVE 123
Query: 176 IARKALREASIDNG 189
A + ++ +I G
Sbjct: 124 AAVEKIKALAIPVG 137
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain
{Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}
Length = 180
Score = 64.8 bits (157), Expect = 5e-13
Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 2/114 (1%)
Query: 116 VDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATD 175
+ A+++ +++K DD GDGTT+ TVLA L++ + + +P + G +A +
Sbjct: 3 YEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVE 62
Query: 176 IARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLR 229
+ L + + + L + K+A++A L+
Sbjct: 63 KVTETLLKGAKIVAGGGVTLLQA--APTLDELKLEGDEATGANIVKVALEAPLK 114
>d1uzea_ d.92.1.5 (A:) Angiotensin converting enzyme, ACE {Human
(Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 29.0 bits (64), Expect = 1.1
Identities = 17/128 (13%), Positives = 39/128 (30%), Gaps = 14/128 (10%)
Query: 146 ASELLKNAEKLIDQRLHPQTIIAGWRRATDI----ARKALREASIDNGLNSEKFRE---- 197
AS+ ++ ++ Q + + A W T+I ++ L++ + +
Sbjct: 5 ASKFVEEYDRTS-QVVWNEYAEANWNYNTNITTETSKILLQKNMQIANHTLKYGTQARKF 63
Query: 198 DLLNIARTTLSSKILSQHKEYFSKLAVDAVLRLKG-----SGNLSAIQIIKKKGGCLEDS 252
D+ + TT+ I + L + S + G CL+
Sbjct: 64 DVNQLQNTTIKRIIKKVQDLERAALPAQELEEYNKILLDMETTYSVATVCHPNGSCLQLE 123
Query: 253 FLDEGFLL 260
+
Sbjct: 124 PDLTNVMA 131
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli
[TaxId: 562]}
Length = 459
Score = 28.3 bits (62), Expect = 1.8
Identities = 10/80 (12%), Positives = 28/80 (35%), Gaps = 16/80 (20%)
Query: 139 TTSVTVLASELLKNAE---KLIDQRLHPQTIIA-------GWRRATDIARKA------LR 182
T + L + + ++ + ++ I G + + +R
Sbjct: 380 TNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVR 439
Query: 183 EASIDNGLNSEKFREDLLNI 202
E ++ GL +E +D+ ++
Sbjct: 440 EVVLERGLLTEAELDDIFSV 459
>d1j36a_ d.92.1.5 (A:) Angiotensin converting enzyme, ACE {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 598
Score = 28.2 bits (62), Expect = 2.2
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
Query: 146 ASELLKNAEKLIDQRLHPQTIIAGWRRATDI---ARKALREASIDNGLNSEKFREDLLNI 202
A E L+N K + A W + I K E S + ++ D
Sbjct: 3 AKEYLENLNK-ELAKRTNVETEAAWAYRSAITDENEKKKNEISAELAKFMKEVASDTTKF 61
Query: 203 ARTTLSSKIL 212
+ S+ L
Sbjct: 62 QWRSYQSEDL 71
>d1bxba_ c.1.15.3 (A:) D-xylose isomerase {Thermus aquaticus, subsp.
Thermophilus [TaxId: 271]}
Length = 387
Score = 26.9 bits (59), Expect = 5.0
Identities = 12/81 (14%), Positives = 23/81 (28%), Gaps = 10/81 (12%)
Query: 312 KEKMKDKVEKILKHNANVF-----INRQLIYNYPE--QLFADAGVMAIEHADFDGIERLA 364
K+ + + K+ AN+F + P + ++ G E
Sbjct: 75 KKALDETGLKVPMVTANLFSDPAFKDGAFTSPDPWVRAYALRKSLETMDLGAELGAEIYV 134
Query: 365 LVTGGEIVSTFDNPDQVKLGK 385
+ G E + K K
Sbjct: 135 VWPGREG---AEVEATGKARK 152
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp.,
ym55-1 [TaxId: 1409]}
Length = 462
Score = 26.8 bits (58), Expect = 6.0
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 169 GWRRATDIARKA------LREASIDNGLNSEKFREDLLNIARTT 206
G+ A +AR+A +RE I G+ +E+ ++LN
Sbjct: 413 GYETAAKLAREAYLTGESIRELCIKYGVLTEEQLNEILNPYEMI 456
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 459
Score = 26.6 bits (58), Expect = 6.8
Identities = 9/42 (21%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 169 GWRRATDIARKA------LREASIDNGLNSEKFREDLLNIAR 204
G+ A+ +A+ A L+E++++ G+ +EK ++ +
Sbjct: 416 GYDAASKVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEH 457
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]}
Length = 456
Score = 26.3 bits (57), Expect = 7.5
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 169 GWRRATDIARKA------LREASIDNGLNSEKFREDLLN 201
G+ +A +IA+KA L+ A++ G SE + +
Sbjct: 414 GYDKAAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVR 452
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]}
Length = 460
Score = 26.3 bits (57), Expect = 9.0
Identities = 16/84 (19%), Positives = 38/84 (45%), Gaps = 16/84 (19%)
Query: 139 TTSVTVLASELLKNAE---KLIDQRLHPQTIIA-------GWRRATDIARKA------LR 182
+V + L + E + I++ L ++A G+ +A +I +KA L+
Sbjct: 374 ADAVASFDAHLAQGIEPNLERIEEYLQKNPMLATALNKAIGYDKAAEIVKKALKEKKTLK 433
Query: 183 EASIDNGLNSEKFREDLLNIARTT 206
+A+++ G +E+ + ++ R
Sbjct: 434 QAALELGYLTEEEFDRIVVPMRLA 457
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.377
Gapped
Lambda K H
0.267 0.0664 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,513,205
Number of extensions: 73155
Number of successful extensions: 209
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 25
Length of query: 418
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 330
Effective length of database: 1,199,356
Effective search space: 395787480
Effective search space used: 395787480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)