Query psy1755
Match_columns 103
No_of_seqs 107 out of 353
Neff 6.9
Searched_HMMs 46136
Date Sat Aug 17 01:22:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1755.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1755hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2563|consensus 99.8 2.5E-22 5.5E-27 159.0 1.3 95 3-97 364-462 (480)
2 PF11700 ATG22: Vacuole efflux 97.7 0.00045 9.7E-09 55.6 9.3 92 3-94 385-477 (477)
3 PRK05122 major facilitator sup 97.4 0.0012 2.6E-08 50.0 8.8 86 4-89 308-393 (399)
4 TIGR00879 SP MFS transporter, 97.3 0.00039 8.6E-09 52.5 5.0 85 8-92 393-477 (481)
5 PRK09556 uhpT sugar phosphate 97.3 0.0016 3.4E-08 51.1 7.7 91 4-97 355-462 (467)
6 PRK03699 putative transporter; 97.1 0.0027 5.8E-08 48.5 7.5 89 3-92 299-388 (394)
7 TIGR00880 2_A_01_02 Multidrug 97.0 0.012 2.6E-07 36.9 9.0 82 4-85 57-138 (141)
8 PRK11273 glpT sn-glycerol-3-ph 97.0 0.0065 1.4E-07 47.4 9.0 77 8-84 357-434 (452)
9 COG0738 FucP Fucose permease [ 97.0 0.0017 3.7E-08 51.8 5.6 62 5-68 331-392 (422)
10 PRK11663 regulatory protein Uh 96.9 0.0044 9.6E-08 48.1 7.5 82 7-88 346-428 (434)
11 PF07690 MFS_1: Major Facilita 96.9 0.012 2.6E-07 42.9 9.1 78 3-80 90-167 (352)
12 TIGR00892 2A0113 monocarboxyla 96.8 0.0014 2.9E-08 51.6 3.5 61 3-63 338-398 (455)
13 PRK11551 putative 3-hydroxyphe 96.7 0.012 2.7E-07 44.5 8.3 81 4-84 314-395 (406)
14 PRK10489 enterobactin exporter 96.7 0.011 2.3E-07 45.4 7.8 84 4-87 318-402 (417)
15 TIGR00900 2A0121 H+ Antiporter 96.7 0.015 3.3E-07 42.5 8.3 82 5-86 99-180 (365)
16 TIGR00899 2A0120 sugar efflux 96.7 0.019 4.2E-07 42.6 8.9 81 5-86 295-375 (375)
17 TIGR01272 gluP glucose/galacto 96.6 0.012 2.6E-07 44.3 7.6 62 5-68 237-298 (310)
18 TIGR00893 2A0114 d-galactonate 96.5 0.025 5.4E-07 41.4 8.5 76 6-81 319-395 (399)
19 cd06174 MFS The Major Facilita 96.5 0.02 4.3E-07 41.4 7.8 82 3-84 270-351 (352)
20 TIGR00903 2A0129 major facilit 96.5 0.022 4.8E-07 43.8 8.5 77 5-83 287-363 (368)
21 TIGR00710 efflux_Bcr_CflA drug 96.5 0.025 5.4E-07 42.0 8.4 83 4-86 99-182 (385)
22 TIGR00898 2A0119 cation transp 96.5 0.013 2.8E-07 45.9 7.1 83 5-89 417-499 (505)
23 TIGR00887 2A0109 phosphate:H+ 96.5 0.017 3.7E-07 45.7 7.7 82 12-93 406-497 (502)
24 TIGR00897 2A0118 polyol permea 96.4 0.039 8.5E-07 42.2 9.5 80 4-85 322-401 (402)
25 TIGR00893 2A0114 d-galactonate 96.4 0.019 4E-07 42.1 7.4 78 5-82 89-166 (399)
26 PRK11102 bicyclomycin/multidru 96.4 0.039 8.5E-07 41.2 9.1 83 5-87 86-169 (377)
27 PRK09874 drug efflux system pr 96.4 0.02 4.4E-07 43.1 7.4 81 4-84 317-397 (408)
28 TIGR00899 2A0120 sugar efflux 96.3 0.05 1.1E-06 40.4 9.3 81 6-86 95-178 (375)
29 TIGR00712 glpT glycerol-3-phos 96.3 0.013 2.9E-07 45.4 6.3 69 22-90 369-438 (438)
30 PF06813 Nodulin-like: Nodulin 96.1 0.035 7.5E-07 41.5 7.3 73 15-88 113-185 (250)
31 TIGR00890 2A0111 Oxalate/Forma 96.1 0.089 1.9E-06 38.5 9.4 80 6-86 99-179 (377)
32 PRK10642 proline/glycine betai 96.1 0.089 1.9E-06 41.6 9.9 82 8-90 352-435 (490)
33 PRK12382 putative transporter; 96.0 0.069 1.5E-06 40.4 8.8 81 5-85 309-389 (392)
34 PRK11551 putative 3-hydroxyphe 96.0 0.11 2.3E-06 39.4 9.8 84 4-87 109-193 (406)
35 PRK03633 putative MFS family t 96.0 0.065 1.4E-06 40.6 8.5 73 5-77 292-364 (381)
36 TIGR00891 2A0112 putative sial 95.9 0.13 2.9E-06 38.2 9.8 61 5-65 107-167 (405)
37 COG2270 Permeases of the major 95.9 0.029 6.3E-07 45.1 6.4 90 4-94 347-437 (438)
38 PRK11010 ampG muropeptide tran 95.9 0.11 2.4E-06 41.4 9.7 72 17-88 335-406 (491)
39 TIGR00711 efflux_EmrB drug res 95.8 0.033 7.2E-07 43.0 6.2 83 4-86 96-179 (485)
40 TIGR00879 SP MFS transporter, 95.8 0.086 1.9E-06 39.7 8.3 83 5-87 134-219 (481)
41 PRK09528 lacY galactoside perm 95.6 0.096 2.1E-06 40.2 8.1 90 7-96 324-415 (420)
42 TIGR01299 synapt_SV2 synaptic 95.5 0.095 2.1E-06 44.6 8.4 83 5-89 655-738 (742)
43 PRK11195 lysophospholipid tran 95.4 0.11 2.3E-06 40.0 7.7 81 6-87 301-382 (393)
44 PRK10077 xylE D-xylose transpo 95.3 0.12 2.6E-06 40.0 7.9 75 15-90 381-462 (479)
45 PRK11043 putative transporter; 95.3 0.25 5.3E-06 37.5 9.5 81 6-87 102-183 (401)
46 PRK10473 multidrug efflux syst 95.3 0.22 4.7E-06 37.7 9.0 82 6-87 99-181 (392)
47 TIGR00885 fucP L-fucose:H+ sym 95.1 0.13 2.8E-06 40.1 7.4 57 3-61 326-382 (410)
48 TIGR00889 2A0110 nucleoside tr 95.1 0.17 3.7E-06 39.3 8.1 92 5-96 315-414 (418)
49 PRK10213 nepI ribonucleoside t 95.0 0.29 6.3E-06 37.6 9.1 70 6-75 116-185 (394)
50 PRK11010 ampG muropeptide tran 95.0 0.31 6.7E-06 38.9 9.5 86 3-88 112-198 (491)
51 TIGR00895 2A0115 benzoate tran 95.0 0.11 2.4E-06 38.4 6.6 84 4-87 111-195 (398)
52 PRK03545 putative arabinose tr 95.0 0.31 6.7E-06 36.9 9.2 75 6-80 105-179 (390)
53 PRK09705 cynX putative cyanate 95.0 0.21 4.5E-06 38.3 8.2 59 6-64 300-359 (393)
54 PRK09874 drug efflux system pr 94.9 0.31 6.8E-06 36.7 9.0 80 6-86 115-195 (408)
55 PRK15011 sugar efflux transpor 94.9 0.44 9.4E-06 36.4 9.8 69 16-85 323-391 (393)
56 PRK12307 putative sialic acid 94.8 0.48 1E-05 36.0 9.9 58 5-62 113-170 (426)
57 PRK03893 putative sialic acid 94.8 0.15 3.3E-06 39.7 7.1 58 10-67 378-435 (496)
58 TIGR00890 2A0111 Oxalate/Forma 94.7 0.15 3.3E-06 37.3 6.7 71 5-75 302-372 (377)
59 TIGR00892 2A0113 monocarboxyla 94.7 0.18 4E-06 39.6 7.5 79 7-86 117-195 (455)
60 KOG2504|consensus 94.7 0.029 6.2E-07 45.7 3.0 84 2-85 392-476 (509)
61 PRK03545 putative arabinose tr 94.7 0.51 1.1E-05 35.8 9.7 81 4-85 300-380 (390)
62 PTZ00207 hypothetical protein; 94.7 0.29 6.3E-06 40.8 8.9 55 4-59 126-180 (591)
63 PRK03893 putative sialic acid 94.7 0.43 9.2E-06 37.2 9.4 61 4-64 114-174 (496)
64 PRK12307 putative sialic acid 94.5 0.35 7.5E-06 36.8 8.5 56 16-71 339-394 (426)
65 PLN00028 nitrate transmembrane 94.5 0.11 2.5E-06 41.0 6.0 81 8-91 358-439 (476)
66 PRK10489 enterobactin exporter 94.5 0.31 6.7E-06 37.3 8.1 80 7-86 119-198 (417)
67 TIGR00894 2A0114euk Na(+)-depe 94.5 0.15 3.3E-06 39.6 6.5 79 5-83 138-217 (465)
68 PRK15402 multidrug efflux syst 94.5 0.5 1.1E-05 35.9 9.3 80 6-86 109-190 (406)
69 TIGR00792 gph sugar (Glycoside 94.5 0.5 1.1E-05 36.0 9.2 88 5-92 318-428 (437)
70 TIGR00924 yjdL_sub1_fam amino 94.4 0.28 6.1E-06 39.0 7.9 83 6-88 110-195 (475)
71 PRK10091 MFS transport protein 94.3 0.48 1E-05 36.0 8.8 33 31-63 321-353 (382)
72 TIGR00712 glpT glycerol-3-phos 94.3 0.64 1.4E-05 36.0 9.5 81 6-87 126-209 (438)
73 TIGR00894 2A0114euk Na(+)-depe 94.1 0.23 5E-06 38.6 6.9 76 9-85 372-450 (465)
74 PRK15075 citrate-proton sympor 94.1 0.5 1.1E-05 36.6 8.7 57 7-63 340-397 (434)
75 TIGR00881 2A0104 phosphoglycer 94.1 0.12 2.6E-06 37.9 4.9 83 5-87 90-174 (379)
76 PRK09584 tppB putative tripept 94.1 0.3 6.5E-06 39.1 7.5 59 6-65 120-181 (500)
77 TIGR00898 2A0119 cation transp 94.0 0.54 1.2E-05 36.8 8.8 82 4-88 186-267 (505)
78 PRK11902 ampG muropeptide tran 94.0 0.93 2E-05 34.6 9.9 82 6-87 102-184 (402)
79 cd06174 MFS The Major Facilita 93.9 0.49 1.1E-05 34.1 7.8 80 5-84 94-173 (352)
80 PRK09952 shikimate transporter 93.9 0.71 1.5E-05 36.0 9.2 79 8-87 353-435 (438)
81 TIGR01299 synapt_SV2 synaptic 93.9 0.5 1.1E-05 40.3 8.8 56 4-59 261-316 (742)
82 PRK15011 sugar efflux transpor 93.6 1.2 2.6E-05 33.9 9.9 81 7-87 114-197 (393)
83 PRK10054 putative transporter; 93.6 0.53 1.2E-05 36.2 7.9 74 7-81 105-178 (395)
84 PRK11663 regulatory protein Uh 93.6 0.94 2E-05 35.1 9.3 81 7-88 120-202 (434)
85 PRK10504 putative transporter; 93.5 0.82 1.8E-05 35.5 8.9 55 6-60 361-415 (471)
86 PRK11043 putative transporter; 93.5 1 2.3E-05 34.0 9.3 55 5-60 303-357 (401)
87 PRK10207 dipeptide/tripeptide 93.5 0.52 1.1E-05 37.8 7.9 84 6-90 113-199 (489)
88 PRK14995 methyl viologen resis 93.4 0.82 1.8E-05 36.2 9.0 82 6-87 102-185 (495)
89 PF03092 BT1: BT1 family; Int 93.4 0.79 1.7E-05 36.2 8.8 76 19-95 339-422 (433)
90 PRK11652 emrD multidrug resist 93.4 0.85 1.8E-05 34.5 8.7 81 6-87 104-186 (394)
91 PRK10077 xylE D-xylose transpo 93.4 1.2 2.5E-05 34.5 9.5 46 6-51 128-173 (479)
92 TIGR00901 2A0125 AmpG-related 93.4 1.2 2.6E-05 33.1 9.3 56 7-62 92-147 (356)
93 PRK10207 dipeptide/tripeptide 93.3 0.44 9.5E-06 38.3 7.2 92 5-96 386-487 (489)
94 TIGR00924 yjdL_sub1_fam amino 93.3 0.45 9.9E-06 37.8 7.3 86 5-90 388-473 (475)
95 PRK11646 multidrug resistance 93.2 1.1 2.4E-05 34.5 9.1 75 5-80 106-180 (400)
96 PRK11128 putative 3-phenylprop 93.1 0.6 1.3E-05 35.4 7.5 76 6-83 102-177 (382)
97 PRK10504 putative transporter; 93.1 0.78 1.7E-05 35.6 8.2 79 5-84 105-184 (471)
98 PRK10133 L-fucose transporter; 93.1 0.6 1.3E-05 36.7 7.6 56 5-62 354-409 (438)
99 PRK15402 multidrug efflux syst 93.1 0.98 2.1E-05 34.3 8.6 58 6-64 317-374 (406)
100 PRK10091 MFS transport protein 93.0 1.1 2.3E-05 34.0 8.7 81 5-86 98-180 (382)
101 PRK15462 dipeptide/tripeptide 92.9 0.73 1.6E-05 37.5 8.0 74 15-89 117-193 (493)
102 TIGR00902 2A0127 phenyl propri 92.8 0.68 1.5E-05 35.2 7.4 60 6-67 102-161 (382)
103 PRK11652 emrD multidrug resist 92.8 1.4 3E-05 33.3 9.0 53 6-59 307-359 (394)
104 COG2271 UhpC Sugar phosphate p 92.7 0.21 4.5E-06 40.4 4.6 87 3-89 351-439 (448)
105 TIGR00903 2A0129 major facilit 92.7 1.1 2.4E-05 34.4 8.5 80 7-87 88-168 (368)
106 TIGR00896 CynX cyanate transpo 92.2 1.4 3.1E-05 32.7 8.3 59 7-66 96-154 (355)
107 TIGR02332 HpaX 4-hydroxyphenyl 92.1 1.8 3.9E-05 33.4 9.1 54 6-59 104-157 (412)
108 PRK06814 acylglycerophosphoeth 92.1 1.2 2.7E-05 38.7 8.9 83 4-86 114-196 (1140)
109 TIGR00897 2A0118 polyol permea 92.1 1.6 3.4E-05 33.4 8.7 57 7-63 114-171 (402)
110 PF03825 Nuc_H_symport: Nucleo 92.0 1.6 3.4E-05 34.4 8.7 81 8-88 311-399 (400)
111 PRK11902 ampG muropeptide tran 91.9 2.2 4.8E-05 32.5 9.3 80 9-92 318-397 (402)
112 TIGR00887 2A0109 phosphate:H+ 91.8 2.5 5.3E-05 33.5 9.7 49 6-54 123-171 (502)
113 PRK11195 lysophospholipid tran 91.6 1.9 4.1E-05 33.1 8.7 55 6-60 96-150 (393)
114 PRK03699 putative transporter; 91.6 2.2 4.7E-05 32.5 8.9 54 6-60 103-157 (394)
115 PRK09584 tppB putative tripept 91.6 1.1 2.3E-05 36.0 7.4 44 5-48 389-432 (500)
116 TIGR00710 efflux_Bcr_CflA drug 91.5 3.4 7.5E-05 30.5 9.7 50 6-56 308-357 (385)
117 TIGR00883 2A0106 metabolite-pr 91.4 3.2 6.9E-05 30.4 9.3 49 6-54 104-152 (394)
118 TIGR00900 2A0121 H+ Antiporter 90.7 0.73 1.6E-05 33.6 5.3 58 4-61 307-364 (365)
119 COG2814 AraJ Arabinose efflux 90.6 2.9 6.3E-05 33.4 8.9 85 7-92 309-393 (394)
120 PRK11646 multidrug resistance 90.5 1.6 3.4E-05 33.6 7.2 56 7-62 306-361 (400)
121 TIGR00881 2A0104 phosphoglycer 90.5 0.76 1.6E-05 33.6 5.2 58 5-62 317-374 (379)
122 TIGR00891 2A0112 putative sial 90.3 0.86 1.9E-05 33.8 5.5 58 6-63 336-393 (405)
123 PRK10054 putative transporter; 89.6 3.4 7.4E-05 31.7 8.5 76 5-81 305-380 (395)
124 PRK12382 putative transporter; 89.6 5.5 0.00012 30.0 9.4 57 6-62 120-176 (392)
125 TIGR01272 gluP glucose/galacto 89.5 5.6 0.00012 29.8 9.4 55 5-59 17-71 (310)
126 PRK09705 cynX putative cyanate 89.3 5.2 0.00011 30.5 9.3 56 5-61 104-159 (393)
127 PRK10406 alpha-ketoglutarate t 89.3 4.9 0.00011 31.0 9.2 73 16-89 354-428 (432)
128 TIGR00886 2A0108 nitrite extru 89.0 6.2 0.00014 29.0 9.2 49 6-55 99-147 (366)
129 TIGR02718 sider_RhtX_FptX side 88.9 6.1 0.00013 29.9 9.3 77 10-87 109-186 (390)
130 PRK15403 multidrug efflux syst 88.7 6.4 0.00014 30.4 9.4 81 6-87 112-194 (413)
131 KOG0569|consensus 88.7 4.1 8.8E-05 33.4 8.5 86 8-93 378-463 (485)
132 PRK06814 acylglycerophosphoeth 88.6 3.1 6.7E-05 36.3 8.3 55 5-59 341-395 (1140)
133 PRK08633 2-acyl-glycerophospho 88.5 5.1 0.00011 34.6 9.5 57 4-60 109-165 (1146)
134 TIGR00788 fbt folate/biopterin 88.2 5.5 0.00012 31.7 9.0 54 9-62 362-415 (468)
135 KOG0252|consensus 88.1 1 2.2E-05 37.2 4.7 72 23-96 431-508 (538)
136 PRK10642 proline/glycine betai 88.0 9 0.00019 30.3 10.0 39 6-44 126-164 (490)
137 PRK15403 multidrug efflux syst 88.0 7.5 0.00016 30.0 9.4 87 6-96 320-406 (413)
138 PRK05122 major facilitator sup 87.5 5.1 0.00011 30.2 8.1 58 6-63 120-177 (399)
139 TIGR00883 2A0106 metabolite-pr 87.3 2.1 4.5E-05 31.4 5.7 59 5-63 319-378 (394)
140 TIGR00805 oat sodium-independe 87.2 3 6.4E-05 34.8 7.1 54 5-58 179-232 (633)
141 PRK10406 alpha-ketoglutarate t 87.0 12 0.00027 28.8 10.1 36 6-41 132-167 (432)
142 PRK09952 shikimate transporter 86.9 13 0.00028 29.0 10.2 44 6-49 133-176 (438)
143 TIGR02718 sider_RhtX_FptX side 86.3 10 0.00023 28.6 9.2 52 12-63 317-369 (390)
144 PRK10213 nepI ribonucleoside t 85.9 10 0.00022 29.1 9.0 59 5-64 312-370 (394)
145 PF05977 MFS_3: Transmembrane 85.7 4.6 9.9E-05 33.1 7.3 85 4-88 109-193 (524)
146 PRK09528 lacY galactoside perm 85.1 5.7 0.00012 30.4 7.3 57 32-89 139-195 (420)
147 PRK11273 glpT sn-glycerol-3-ph 84.7 9.7 0.00021 29.6 8.6 82 6-87 128-211 (452)
148 PRK09848 glucuronide transport 84.4 13 0.00029 28.7 9.2 84 7-90 328-433 (448)
149 COG2223 NarK Nitrate/nitrite t 84.3 0.91 2E-05 36.5 2.6 62 27-91 342-404 (417)
150 KOG0255|consensus 84.2 11 0.00023 29.9 8.7 78 4-84 177-254 (521)
151 PLN00028 nitrate transmembrane 84.1 12 0.00026 29.5 9.0 48 6-55 132-180 (476)
152 KOG2532|consensus 84.1 2.3 5.1E-05 34.3 4.9 79 6-84 136-215 (466)
153 TIGR00792 gph sugar (Glycoside 84.1 8.9 0.00019 29.1 8.0 39 20-58 121-160 (437)
154 PRK03612 spermidine synthase; 83.8 10 0.00022 31.1 8.5 59 4-63 116-175 (521)
155 TIGR00896 CynX cyanate transpo 83.5 3.7 8E-05 30.5 5.6 59 5-63 292-351 (355)
156 PRK03633 putative MFS family t 83.2 12 0.00025 28.2 8.3 56 5-60 101-156 (381)
157 TIGR00885 fucP L-fucose:H+ sym 83.1 11 0.00024 29.2 8.3 52 7-58 103-154 (410)
158 PF03209 PUCC: PUCC protein; 83.0 21 0.00045 28.8 9.7 60 5-64 96-155 (403)
159 PRK11102 bicyclomycin/multidru 82.9 17 0.00037 27.0 9.1 39 15-54 304-342 (377)
160 TIGR00895 2A0115 benzoate tran 82.5 3.1 6.7E-05 30.6 4.8 54 4-57 344-397 (398)
161 PRK09669 putative symporter Ya 82.5 21 0.00045 27.7 9.9 56 4-59 325-387 (444)
162 TIGR00902 2A0127 phenyl propri 82.1 18 0.00039 27.3 9.0 74 5-80 300-374 (382)
163 PRK10473 multidrug efflux syst 80.2 23 0.00049 26.6 10.5 26 30-55 323-348 (392)
164 KOG3764|consensus 80.2 3.4 7.3E-05 33.7 4.4 85 7-92 168-254 (464)
165 COG2814 AraJ Arabinose efflux 80.0 19 0.00042 28.7 8.7 80 6-85 109-189 (394)
166 TIGR00882 2A0105 oligosacchari 79.5 15 0.00033 27.7 7.8 62 16-77 325-387 (396)
167 KOG2563|consensus 77.9 12 0.00026 30.8 6.9 59 3-63 272-330 (480)
168 PF00083 Sugar_tr: Sugar (and 77.9 0.14 2.9E-06 39.5 -4.0 82 12-94 363-446 (451)
169 PRK15034 nitrate/nitrite trans 77.2 25 0.00054 28.5 8.7 47 4-52 134-181 (462)
170 PRK10429 melibiose:sodium symp 76.4 26 0.00056 27.6 8.5 37 19-55 127-164 (473)
171 KOG2504|consensus 76.1 4.3 9.3E-05 33.2 4.0 59 28-86 164-222 (509)
172 PRK15034 nitrate/nitrite trans 75.6 4 8.7E-05 33.1 3.7 49 32-80 400-449 (462)
173 PRK08633 2-acyl-glycerophospho 74.9 23 0.00049 30.7 8.3 53 3-55 327-379 (1146)
174 KOG2325|consensus 74.9 11 0.00023 31.1 6.0 61 31-91 161-236 (488)
175 COG2271 UhpC Sugar phosphate p 73.4 8.5 0.00018 31.4 5.0 84 2-86 121-208 (448)
176 TIGR00882 2A0105 oligosacchari 73.4 29 0.00064 26.2 7.8 77 8-87 109-185 (396)
177 KOG3762|consensus 71.8 26 0.00057 29.7 7.6 91 7-97 468-559 (618)
178 PF07690 MFS_1: Major Facilita 70.0 8.6 0.00019 27.8 4.1 47 4-50 305-351 (352)
179 PF03092 BT1: BT1 family; Int 69.5 29 0.00063 27.4 7.2 77 11-87 98-177 (433)
180 PRK09556 uhpT sugar phosphate 69.4 11 0.00023 29.5 4.8 54 6-59 130-183 (467)
181 TIGR02332 HpaX 4-hydroxyphenyl 68.8 11 0.00023 29.1 4.6 37 27-63 361-398 (412)
182 PRK15075 citrate-proton sympor 68.4 52 0.0011 25.3 10.3 44 6-49 125-168 (434)
183 PF00854 PTR2: POT family; In 68.3 50 0.0011 25.0 9.2 85 7-92 42-130 (372)
184 KOG2532|consensus 66.5 20 0.00044 29.0 5.9 82 3-84 362-446 (466)
185 PF05977 MFS_3: Transmembrane 66.3 66 0.0014 26.4 8.9 79 6-84 315-393 (524)
186 PF02009 Rifin_STEVOR: Rifin/s 65.5 8.1 0.00018 29.8 3.3 13 87-99 280-293 (299)
187 PF11700 ATG22: Vacuole efflux 64.9 74 0.0016 25.8 9.2 57 33-89 187-252 (477)
188 PF01306 LacY_symp: LacY proto 64.3 40 0.00087 27.1 7.1 50 41-90 356-405 (412)
189 TIGR00806 rfc RFC reduced fola 63.9 70 0.0015 26.6 8.5 79 6-87 123-205 (511)
190 TIGR00711 efflux_EmrB drug res 63.1 23 0.00051 27.2 5.5 55 6-60 356-410 (485)
191 TIGR01301 GPH_sucrose GPH fami 60.5 92 0.002 25.4 8.9 86 4-89 386-475 (477)
192 PTZ00207 hypothetical protein; 60.2 76 0.0016 26.7 8.3 85 4-89 458-556 (591)
193 PRK11462 putative transporter; 58.6 86 0.0019 24.7 8.1 34 21-54 132-166 (460)
194 PF07857 DUF1632: CEO family ( 56.3 33 0.00072 25.8 5.1 60 31-90 56-141 (254)
195 PRK14995 methyl viologen resis 56.2 36 0.00078 26.9 5.6 54 5-58 358-411 (495)
196 PF13347 MFS_2: MFS/sugar tran 56.2 46 0.001 25.6 6.1 65 22-86 127-200 (428)
197 KOG0255|consensus 56.1 1E+02 0.0022 24.4 8.4 82 6-88 414-496 (521)
198 PF05546 She9_MDM33: She9 / Md 55.2 15 0.00034 26.9 3.1 32 64-95 152-183 (207)
199 PRK10921 twin-arginine protein 53.8 28 0.0006 26.1 4.4 12 15-26 129-140 (258)
200 KOG4112|consensus 52.8 62 0.0013 21.1 5.8 51 34-90 26-76 (101)
201 TIGR00769 AAA ADP/ATP carrier 52.2 1.3E+02 0.0028 24.6 9.0 63 1-64 269-333 (472)
202 PRK05886 yajC preprotein trans 51.6 18 0.0004 23.8 2.7 21 76-96 14-34 (109)
203 PRK09669 putative symporter Ya 50.8 1.1E+02 0.0025 23.5 7.9 34 20-53 131-165 (444)
204 cd08764 Cyt_b561_CG1275_like N 50.3 99 0.0022 22.7 7.0 33 66-98 176-209 (214)
205 TIGR00806 rfc RFC reduced fola 49.6 1.5E+02 0.0033 24.7 8.6 62 2-64 29-92 (511)
206 KOG0254|consensus 48.5 91 0.002 24.9 6.8 87 4-91 401-490 (513)
207 TIGR00769 AAA ADP/ATP carrier 48.2 1.1E+02 0.0023 25.0 7.2 52 7-58 137-189 (472)
208 KOG0253|consensus 47.8 12 0.00026 30.7 1.7 80 8-90 444-524 (528)
209 KOG3626|consensus 47.5 47 0.001 28.9 5.2 85 6-91 245-349 (735)
210 COG1862 YajC Preprotein transl 46.8 23 0.00049 22.9 2.5 21 76-96 19-39 (97)
211 PRK06531 yajC preprotein trans 46.2 21 0.00045 23.7 2.4 16 81-96 17-32 (113)
212 TIGR00739 yajC preprotein tran 45.9 22 0.00047 22.2 2.3 18 79-96 16-33 (84)
213 COG2807 CynX Cyanate permease 45.9 1.3E+02 0.0028 24.3 7.1 60 5-64 303-363 (395)
214 PRK11128 putative 3-phenylprop 44.3 1.4E+02 0.0029 22.5 9.2 58 5-63 300-358 (382)
215 COG3301 NrfD Formate-dependent 43.3 1.6E+02 0.0034 23.0 8.7 91 3-95 136-275 (305)
216 PF04246 RseC_MucC: Positive r 43.2 62 0.0014 21.4 4.4 9 93-101 121-129 (135)
217 PRK10429 melibiose:sodium symp 42.5 1.7E+02 0.0036 23.0 9.6 54 6-59 332-392 (473)
218 KOG0569|consensus 41.3 1.9E+02 0.0041 23.8 7.6 67 22-89 140-209 (485)
219 TIGR00926 2A1704 Peptide:H+ sy 40.8 1.1E+02 0.0023 26.0 6.3 54 37-90 127-187 (654)
220 TIGR00886 2A0108 nitrite extru 40.3 1.4E+02 0.0031 21.7 8.4 30 35-64 38-67 (366)
221 PF12273 RCR: Chitin synthesis 39.2 14 0.00029 24.6 0.7 27 69-95 3-29 (130)
222 COG3088 CcmH Uncharacterized p 38.1 48 0.001 23.3 3.2 37 53-89 83-131 (153)
223 PF03219 TLC: TLC ATP/ADP tran 38.0 1.7E+02 0.0038 23.9 7.0 49 11-59 156-205 (491)
224 TIGR00788 fbt folate/biopterin 37.5 2.1E+02 0.0045 22.7 8.0 80 7-87 129-211 (468)
225 COG1108 ZnuB ABC-type Mn2+/Zn2 37.3 1.8E+02 0.0039 22.1 6.5 40 15-55 75-114 (274)
226 PF01306 LacY_symp: LacY proto 37.1 61 0.0013 26.0 4.2 77 8-87 114-190 (412)
227 PF01102 Glycophorin_A: Glycop 36.3 20 0.00042 24.2 1.1 16 78-93 82-97 (122)
228 PF00558 Vpu: Vpu protein; In 35.6 49 0.0011 20.8 2.7 27 68-94 10-36 (81)
229 PRK10452 multidrug efflux syst 35.4 1.3E+02 0.0029 19.9 5.9 39 47-85 67-105 (120)
230 PF10856 DUF2678: Protein of u 35.1 18 0.00039 24.3 0.7 38 59-96 53-90 (118)
231 COG5336 Uncharacterized protei 34.6 64 0.0014 21.6 3.3 34 43-79 51-86 (116)
232 COG3104 PTR2 Dipeptide/tripept 34.3 69 0.0015 26.6 4.1 35 13-48 409-443 (498)
233 PF04120 Iron_permease: Low af 33.0 1.2E+02 0.0025 20.7 4.4 45 47-91 19-67 (132)
234 PRK10746 putative transport pr 32.3 1.1E+02 0.0024 24.4 4.9 18 80-97 443-460 (461)
235 KOG3415|consensus 32.1 1.1E+02 0.0023 20.7 4.0 21 35-55 41-61 (129)
236 PF09973 DUF2208: Predicted me 31.9 1.5E+02 0.0033 22.1 5.3 41 49-89 9-49 (233)
237 cd01324 cbb3_Oxidase_CcoQ Cyto 31.2 1E+02 0.0022 17.2 3.5 21 72-92 20-40 (48)
238 PF05255 UPF0220: Uncharacteri 31.0 1.5E+02 0.0033 20.8 4.9 50 36-85 105-159 (166)
239 PF06609 TRI12: Fungal trichot 30.8 3.3E+02 0.0072 23.1 7.9 26 64-89 196-222 (599)
240 PRK11056 hypothetical protein; 29.6 1.7E+02 0.0036 19.8 4.7 67 19-91 43-116 (120)
241 COG2056 Predicted permease [Ge 29.5 1.4E+02 0.003 24.3 4.9 20 65-84 192-211 (444)
242 PRK05585 yajC preprotein trans 29.4 66 0.0014 20.9 2.7 16 81-96 33-48 (106)
243 KOG4686|consensus 29.2 3.1E+02 0.0066 22.1 6.8 40 33-72 387-427 (459)
244 PF10777 YlaC: Inner membrane 28.6 2.1E+02 0.0046 20.1 5.6 28 65-92 62-90 (155)
245 PF07172 GRP: Glycine rich pro 28.3 98 0.0021 19.8 3.3 10 74-83 11-20 (95)
246 KOG1330|consensus 28.0 12 0.00025 30.9 -1.3 93 6-98 129-222 (493)
247 PF03137 OATP: Organic Anion T 26.7 16 0.00035 30.0 -0.7 36 6-41 149-184 (539)
248 PF12597 DUF3767: Protein of u 26.3 1.1E+02 0.0023 20.4 3.3 29 57-85 60-88 (118)
249 PRK10133 L-fucose transporter; 26.2 3.2E+02 0.0069 21.3 9.0 48 6-54 125-173 (438)
250 PF02699 YajC: Preprotein tran 25.7 37 0.0008 20.9 0.9 17 80-96 16-32 (82)
251 PF14143 YrhC: YrhC-like prote 25.6 1.7E+02 0.0036 17.9 3.9 18 55-72 27-46 (72)
252 KOG2533|consensus 25.3 2E+02 0.0044 23.6 5.4 52 6-58 142-194 (495)
253 KOG1479|consensus 25.1 83 0.0018 25.4 3.1 55 3-58 348-402 (406)
254 PF07226 DUF1422: Protein of u 24.3 2.3E+02 0.005 19.0 4.6 65 19-89 43-114 (117)
255 PF06609 TRI12: Fungal trichot 24.1 3.4E+02 0.0074 23.0 6.6 54 5-58 412-465 (599)
256 TIGR03141 cytochro_ccmD heme e 23.3 99 0.0022 16.8 2.3 22 65-86 9-30 (45)
257 PRK11387 S-methylmethionine tr 23.0 3.3E+02 0.0071 21.6 6.1 28 71-98 442-469 (471)
258 PF12270 Cyt_c_ox_IV: Cytochro 22.3 2.4E+02 0.0051 19.4 4.5 26 66-91 37-62 (137)
259 KOG2533|consensus 22.0 93 0.002 25.5 2.8 42 13-54 382-424 (495)
260 PF03821 Mtp: Golgi 4-transmem 21.7 3E+02 0.0065 20.6 5.2 15 18-32 8-22 (233)
261 TIGR03750 conj_TIGR03750 conju 21.7 2.5E+02 0.0055 18.5 4.9 27 72-98 53-80 (111)
262 PHA03240 envelope glycoprotein 21.3 1.2E+02 0.0026 22.8 3.0 26 66-91 213-238 (258)
263 PF10066 DUF2304: Uncharacteri 21.2 1.7E+02 0.0038 18.8 3.6 35 36-70 32-70 (115)
264 TIGR03770 anch_rpt_perm anchor 21.1 3.6E+02 0.0077 20.1 6.1 36 18-54 81-116 (270)
265 COG3202 ATP/ADP translocase [E 21.0 3.2E+02 0.0069 22.9 5.7 44 18-61 168-211 (509)
266 KOG0254|consensus 20.9 4.3E+02 0.0094 21.0 6.9 48 36-83 91-138 (513)
267 PF05545 FixQ: Cbb3-type cytoc 20.9 1.6E+02 0.0035 16.0 3.3 22 72-95 19-40 (49)
268 PF03125 Sre: C. elegans Sre G 20.7 3E+02 0.0065 21.2 5.3 43 36-80 167-209 (365)
269 PF04276 DUF443: Protein of un 20.3 2.5E+02 0.0053 20.0 4.5 33 47-79 69-104 (199)
No 1
>KOG2563|consensus
Probab=99.84 E-value=2.5e-22 Score=159.00 Aligned_cols=95 Identities=45% Similarity=0.724 Sum_probs=89.4
Q ss_pred HHHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc----hhHHHHHHHHHHHHHH
Q psy1755 3 LLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG----DIVANIALCLALVLGT 78 (103)
Q Consensus 3 v~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~----~~~~~~~~~~~~~~~~ 78 (103)
+.+.++|+|+.+.+|+++|+++|+|||++|++|+|+++.+||++|+++.++.+...++++ ....||.++..+.++.
T Consensus 364 ~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~ 443 (480)
T KOG2563|consen 364 TTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGA 443 (480)
T ss_pred hhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999988887 6678999999999999
Q ss_pred HHHhhcCCcchhhhhhhcC
Q psy1755 79 LLTLIIPPDLRRQAAHSDF 97 (103)
Q Consensus 79 il~~f~k~~~kR~~~e~~~ 97 (103)
++..|+|++|||+++|+..
T Consensus 444 ~lva~~r~~y~R~~~e~~~ 462 (480)
T KOG2563|consen 444 ILVAFFRPDYRRLRAEAGN 462 (480)
T ss_pred HHHhhhhhhHHhHhhhhcc
Confidence 9999999999999999753
No 2
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=97.65 E-value=0.00045 Score=55.60 Aligned_cols=92 Identities=21% Similarity=0.283 Sum_probs=83.3
Q ss_pred HHHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccch-hHHHHHHHHHHHHHHHHH
Q psy1755 3 LLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGD-IVANIALCLALVLGTLLT 81 (103)
Q Consensus 3 v~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~il~ 81 (103)
+...+.|+++++..+..=-+-+|+..|..|+.-=|+-..++...+++-+.+.+.+.+..|+ .+..+.+..+++++.+++
T Consensus 385 ~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll 464 (477)
T PF11700_consen 385 VLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL 464 (477)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999988774 477888889999999999
Q ss_pred hhcCCcchhhhhh
Q psy1755 82 LIIPPDLRRQAAH 94 (103)
Q Consensus 82 ~f~k~~~kR~~~e 94 (103)
.+++.+-.|+|+|
T Consensus 465 ~~v~~~~g~~~A~ 477 (477)
T PF11700_consen 465 FFVDVEKGREDAK 477 (477)
T ss_pred hhccchhhhhccC
Confidence 9999988887765
No 3
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.44 E-value=0.0012 Score=50.05 Aligned_cols=86 Identities=19% Similarity=0.088 Sum_probs=64.9
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI 83 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f 83 (103)
...+.|+..+...|...-...|...|...+...|+.+...++.+.+...+.+++.+..|..+..+..+.+.+++.++..+
T Consensus 308 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (399)
T PRK05122 308 GAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWL 387 (399)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888877777886666667899999999999988888888898888777656666666666777777666
Q ss_pred cCCcch
Q psy1755 84 IPPDLR 89 (103)
Q Consensus 84 ~k~~~k 89 (103)
.+++++
T Consensus 388 ~~~~~~ 393 (399)
T PRK05122 388 LYRRAP 393 (399)
T ss_pred hccccc
Confidence 666543
No 4
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=97.33 E-value=0.00039 Score=52.45 Aligned_cols=85 Identities=15% Similarity=0.230 Sum_probs=60.2
Q ss_pred HHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCCc
Q psy1755 8 RSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPPD 87 (103)
Q Consensus 8 ~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~~ 87 (103)
.+.+..+..|+..-+..|+..|...++..|+.....++.+++.+.+.+++.++.+..+..+..++++++++++.+++.++
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~ 472 (481)
T TIGR00879 393 IAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPE 472 (481)
T ss_pred HHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheeccc
Confidence 34444455577777778854444558999999999999999999999988887665555566666777777766655444
Q ss_pred chhhh
Q psy1755 88 LRRQA 92 (103)
Q Consensus 88 ~kR~~ 92 (103)
.||++
T Consensus 473 ~~~~~ 477 (481)
T TIGR00879 473 TKGRT 477 (481)
T ss_pred CCCCC
Confidence 44433
No 5
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=97.26 E-value=0.0016 Score=51.08 Aligned_cols=91 Identities=19% Similarity=0.115 Sum_probs=54.4
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCc-hhHHHHHHHHhhh-hHHHHHHHHHhhhc------------ccchhHHHH-
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPE-GTSSGLLNASAQV-FGILFTVVYGQLFT------------AFGDIVANI- 68 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e-~~ssgll~~~~qi-~g~i~~~i~~~l~~------------~~~~~~~~~- 68 (103)
...++|++..+......-...|. +|..+ ++.+|+.+..+++ .+++.+.+.+++.| ..| |.+.
T Consensus 355 ~~~~~G~~~~~~~~~~~~~~~~~-~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~--~~~~f 431 (467)
T PRK09556 355 SLFALGFLVFGPQLLIGVAAVGF-VPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTG--WAGTF 431 (467)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhh-cchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccC--hHHHH
Confidence 34456654433333223456684 45544 9999999999998 55888999999988 222 4433
Q ss_pred -HHHHHHHHHHHHHhhcC-CcchhhhhhhcC
Q psy1755 69 -ALCLALVLGTLLTLIIP-PDLRRQAAHSDF 97 (103)
Q Consensus 69 -~~~~~~~~~~il~~f~k-~~~kR~~~e~~~ 97 (103)
++.++.+++.+..++++ .+.||.+.||+.
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (467)
T PRK09556 432 AALDIAAIGCICLMAIVAVMEERKIRREKKI 462 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 33455666666655553 333454555543
No 6
>PRK03699 putative transporter; Provisional
Probab=97.11 E-value=0.0027 Score=48.50 Aligned_cols=89 Identities=15% Similarity=0.059 Sum_probs=65.8
Q ss_pred HHHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH-HH
Q psy1755 3 LLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTL-LT 81 (103)
Q Consensus 3 v~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~i-l~ 81 (103)
+.+.+.|++.++.+|...-.+.|. .|...+...|.+...+++++.+-+.+.+++.+..|.....+..+.++.++.+ ..
T Consensus 299 ~~~~~~G~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 377 (394)
T PRK03699 299 YAILGLGFFSSAIYTTIITLGSQQ-TKVASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCI 377 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-ccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHH
Confidence 455678998999999988888884 4666677889999999999999999999998877765555655555555544 34
Q ss_pred hhcCCcchhhh
Q psy1755 82 LIIPPDLRRQA 92 (103)
Q Consensus 82 ~f~k~~~kR~~ 92 (103)
.+.|-+.||++
T Consensus 378 ~~~~~~~~~~~ 388 (394)
T PRK03699 378 LLGFVSKHRQH 388 (394)
T ss_pred HHHHHHHHHhc
Confidence 44555556654
No 7
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.04 E-value=0.012 Score=36.92 Aligned_cols=82 Identities=21% Similarity=0.156 Sum_probs=59.5
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI 83 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f 83 (103)
...+.|+..+...|...-...|..-+...+...|+.....++.+.+.+.+.+++.+..+..+..+.......++.+...+
T Consensus 57 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (141)
T TIGR00880 57 ARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF 136 (141)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence 34678888888889998999997655556889999999999999998888888876655444555545555555555444
Q ss_pred cC
Q psy1755 84 IP 85 (103)
Q Consensus 84 ~k 85 (103)
..
T Consensus 137 ~~ 138 (141)
T TIGR00880 137 LL 138 (141)
T ss_pred cC
Confidence 43
No 8
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.02 E-value=0.0065 Score=47.41 Aligned_cols=77 Identities=18% Similarity=0.192 Sum_probs=50.9
Q ss_pred HHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHH-HHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhc
Q psy1755 8 RSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILF-TVVYGQLFTAFGDIVANIALCLALVLGTLLTLII 84 (103)
Q Consensus 8 ~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~-~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~ 84 (103)
.|++..+..+...-++.|...|...++.+|+.+..+++.+.+. +.+.+++.|..|..+..+.+.+++.+++++...+
T Consensus 357 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 434 (452)
T PRK11273 357 IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 434 (452)
T ss_pred HHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 4444433333333456786656667899999999999988775 7788888887775555555556666666655544
No 9
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=97.00 E-value=0.0017 Score=51.83 Aligned_cols=62 Identities=19% Similarity=0.134 Sum_probs=52.5
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHH
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANI 68 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~ 68 (103)
..+.|+|+++++|..+-+|.+ .-| .++..+|.+...+-++|++.+.+.+++.|..|......
T Consensus 331 l~~ig~F~simfPTIfslal~-~l~-~~ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 331 LFLIGLFNSIMFPTIFSLALK-NLG-EHTSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFL 392 (422)
T ss_pred HHHHHHHhHHHHHHHHHHHHh-ccC-ccccccceeeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence 456899999999999999999 556 66666677778889999999999999999998865544
No 10
>PRK11663 regulatory protein UhpC; Provisional
Probab=96.94 E-value=0.0044 Score=48.11 Aligned_cols=82 Identities=18% Similarity=0.133 Sum_probs=52.9
Q ss_pred HHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh-cC
Q psy1755 7 GRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI-IP 85 (103)
Q Consensus 7 l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f-~k 85 (103)
.+|++..+......-...|...|..-++..|+.+..+++.+++-+.+.+++.|..|-...-+...++.+++.+.+.+ .|
T Consensus 346 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 425 (434)
T PRK11663 346 TIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLN 425 (434)
T ss_pred HHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34544433222223345675556666999999999999999999999999998877444444455555555554443 44
Q ss_pred Ccc
Q psy1755 86 PDL 88 (103)
Q Consensus 86 ~~~ 88 (103)
++-
T Consensus 426 ~~~ 428 (434)
T PRK11663 426 AQA 428 (434)
T ss_pred hhc
Confidence 433
No 11
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=96.90 E-value=0.012 Score=42.90 Aligned_cols=78 Identities=22% Similarity=0.189 Sum_probs=60.2
Q ss_pred HHHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHH
Q psy1755 3 LLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLL 80 (103)
Q Consensus 3 v~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il 80 (103)
+...+.|+..+...|...-+..|...+...+...|+.....++..++.+.+.+.+.+..+-.+..+......+++.++
T Consensus 90 ~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 90 IARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAIL 167 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred hhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhh
Confidence 345678999999999999999996666566889999999999999998888888776666545555555555555554
No 12
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=96.78 E-value=0.0014 Score=51.56 Aligned_cols=61 Identities=13% Similarity=0.060 Sum_probs=49.5
Q ss_pred HHHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccch
Q psy1755 3 LLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGD 63 (103)
Q Consensus 3 v~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~ 63 (103)
+.+.+.|+..+...|....+..|..-|...+...|+.+...++.+++-+.+.+.+.+..+.
T Consensus 338 i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~ 398 (455)
T TIGR00892 338 IYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKN 398 (455)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCC
Confidence 4466788888888888899999976555558999999999999999999999888876653
No 13
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=96.72 E-value=0.012 Score=44.52 Aligned_cols=81 Identities=20% Similarity=0.184 Sum_probs=57.2
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchh-HHHHHHHHHHHHHHHHHh
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDI-VANIALCLALVLGTLLTL 82 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~il~~ 82 (103)
...+.|++..+..|....+..|..-|..-++..|+.+..+++.+.+-+.+.+++.+..+.. ...+....+.+++.++.+
T Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 314 AGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 4456788888888999999999665555588899999999999999999999988765543 223333344444444444
Q ss_pred hc
Q psy1755 83 II 84 (103)
Q Consensus 83 f~ 84 (103)
+.
T Consensus 394 ~~ 395 (406)
T PRK11551 394 LL 395 (406)
T ss_pred HH
Confidence 33
No 14
>PRK10489 enterobactin exporter EntS; Provisional
Probab=96.70 E-value=0.011 Score=45.38 Aligned_cols=84 Identities=18% Similarity=0.130 Sum_probs=54.6
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHH-HHHHHHHh
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLAL-VLGTLLTL 82 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~-~~~~il~~ 82 (103)
...+.|+..+...|...-+..|...+...+...|+.....++.+.+-..+.+++.+..|....-+..+.+. +++.+.+.
T Consensus 318 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 397 (417)
T PRK10489 318 CLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLL 397 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 34456666665566666666675544445888999999888888888899998888777644444444333 44444445
Q ss_pred hcCCc
Q psy1755 83 IIPPD 87 (103)
Q Consensus 83 f~k~~ 87 (103)
.+++.
T Consensus 398 ~~~~~ 402 (417)
T PRK10489 398 VLGEL 402 (417)
T ss_pred hcccc
Confidence 55543
No 15
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=96.69 E-value=0.015 Score=42.47 Aligned_cols=82 Identities=15% Similarity=0.120 Sum_probs=57.3
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhc
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLII 84 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~ 84 (103)
..+.|+..+...|...-+..|...|...+...|+.....++..++-+.+.+.+.+..|-.+..+.......++.++..++
T Consensus 99 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 178 (365)
T TIGR00900 99 AGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSV 178 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 45668888888898889999976555557788999999999988888888777766554444444444444554444444
Q ss_pred CC
Q psy1755 85 PP 86 (103)
Q Consensus 85 k~ 86 (103)
|.
T Consensus 179 ~~ 180 (365)
T TIGR00900 179 RI 180 (365)
T ss_pred cc
Confidence 43
No 16
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=96.69 E-value=0.019 Score=42.57 Aligned_cols=81 Identities=17% Similarity=0.172 Sum_probs=60.8
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhc
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLII 84 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~ 84 (103)
..+.|++.+...|.......|.. |...+...|+.+...++.+.+-+.+.+.+.+..|-.+..+....+.+++.++..++
T Consensus 295 ~~~~g~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 373 (375)
T TIGR00899 295 QLLNAIFIGILAGIGMLYFQDLM-PGRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLI 373 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhee
Confidence 34557777778888888888854 76677888999999999888888999988877665555555666667777776666
Q ss_pred CC
Q psy1755 85 PP 86 (103)
Q Consensus 85 k~ 86 (103)
|+
T Consensus 374 ~~ 375 (375)
T TIGR00899 374 KD 375 (375)
T ss_pred cC
Confidence 53
No 17
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=96.63 E-value=0.012 Score=44.28 Aligned_cols=62 Identities=24% Similarity=0.270 Sum_probs=50.8
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHH
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANI 68 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~ 68 (103)
..+.|++.++++|..+-++.+ .+|...+..++++ ..++++|++.+.+.+.+.|+.|..+..+
T Consensus 237 ~~l~g~~~s~i~P~~~s~a~~-~~~~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~ 298 (310)
T TIGR01272 237 VLALGLFNSIMFPTIFSLALN-ALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFA 298 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-hhhhhhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence 446899999999999999999 4666667777775 6788999999999999999877655544
No 18
>TIGR00893 2A0114 d-galactonate transporter.
Probab=96.52 E-value=0.025 Score=41.38 Aligned_cols=76 Identities=22% Similarity=0.306 Sum_probs=57.5
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc-hhHHHHHHHHHHHHHHHHH
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG-DIVANIALCLALVLGTLLT 81 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~-~~~~~~~~~~~~~~~~il~ 81 (103)
..+|.+..+..|....+..|...|...+...|+.+...++.+.+.+.+.+.+.+..| ..+..++.+.+.+++.+..
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 319 VALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred HHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 345556666899999999998777777999999999999999999999999988777 3344444445555554443
No 19
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=96.51 E-value=0.02 Score=41.38 Aligned_cols=82 Identities=29% Similarity=0.291 Sum_probs=66.0
Q ss_pred HHHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHh
Q psy1755 3 LLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTL 82 (103)
Q Consensus 3 v~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~ 82 (103)
+...+.|++.+...|....+..|...|...+...|+.....++.+.+.+.+.+.+.++.+..+..+....+.+++.++..
T Consensus 270 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 270 VALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 34567888899999999999999876677799999999999999999999999988876665666666666666666554
Q ss_pred hc
Q psy1755 83 II 84 (103)
Q Consensus 83 f~ 84 (103)
++
T Consensus 350 ~~ 351 (352)
T cd06174 350 LL 351 (352)
T ss_pred ec
Confidence 43
No 20
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=96.51 E-value=0.022 Score=43.81 Aligned_cols=77 Identities=8% Similarity=0.133 Sum_probs=57.2
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI 83 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f 83 (103)
.++.|++..+.+|....+..|+..|...++..|+.+..+++.|++.+.+.+.+.. +......+.....+++.+...+
T Consensus 287 ~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~~ 363 (368)
T TIGR00903 287 IGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIALL 363 (368)
T ss_pred HHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHh
Confidence 3456778888889999999997666677999999999999999999988887773 4333344445555555555443
No 21
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=96.49 E-value=0.025 Score=42.04 Aligned_cols=83 Identities=16% Similarity=0.069 Sum_probs=56.4
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHh-
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTL- 82 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~- 82 (103)
...+.|+..+...|...-+..|...|..-+...|+.....++.+.+-..+.+.+.+..+-.+..+.......+..++..
T Consensus 99 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 99 LRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF 178 (385)
T ss_pred HHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888999999999654444477889999999998888888888777666654444444444444444433
Q ss_pred hcCC
Q psy1755 83 IIPP 86 (103)
Q Consensus 83 f~k~ 86 (103)
+.|+
T Consensus 179 ~~~~ 182 (385)
T TIGR00710 179 ILPE 182 (385)
T ss_pred hCCC
Confidence 3443
No 22
>TIGR00898 2A0119 cation transport protein.
Probab=96.48 E-value=0.013 Score=45.92 Aligned_cols=83 Identities=18% Similarity=0.107 Sum_probs=56.8
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhc
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLII 84 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~ 84 (103)
..+.+++....++...-+..|+..+...++..|+.+..+.+++++-+.+.+ + ++.+.....+...++..++.++.+++
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l 494 (505)
T TIGR00898 417 AVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLFL 494 (505)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHcC
Confidence 345566677788888999999644444588889999999999998888876 3 33333334445555666666666777
Q ss_pred CCcch
Q psy1755 85 PPDLR 89 (103)
Q Consensus 85 k~~~k 89 (103)
++..+
T Consensus 495 pet~~ 499 (505)
T TIGR00898 495 PETKG 499 (505)
T ss_pred cCCCC
Confidence 76433
No 23
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=96.45 E-value=0.017 Score=45.73 Aligned_cols=82 Identities=21% Similarity=0.133 Sum_probs=55.2
Q ss_pred hhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc----------hhHHHHHHHHHHHHHHHHH
Q psy1755 12 MTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG----------DIVANIALCLALVLGTLLT 81 (103)
Q Consensus 12 ~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~----------~~~~~~~~~~~~~~~~il~ 81 (103)
..+..|+..-+..|+-.+.--++..|+.+..+++.+++.+.+.+.+.++.+ -....++.+++++++.+..
T Consensus 406 ~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~ 485 (502)
T TIGR00887 406 NFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT 485 (502)
T ss_pred hcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh
Confidence 344566777778895434445899999999999999999999988877432 1123344555666666666
Q ss_pred hhcCCcchhhhh
Q psy1755 82 LIIPPDLRRQAA 93 (103)
Q Consensus 82 ~f~k~~~kR~~~ 93 (103)
++++|..+|...
T Consensus 486 ~~lpEt~~~~le 497 (502)
T TIGR00887 486 LLIPETKGKSLE 497 (502)
T ss_pred eEeccCCCCCHH
Confidence 667776555433
No 24
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=96.45 E-value=0.039 Score=42.25 Aligned_cols=80 Identities=23% Similarity=0.364 Sum_probs=63.1
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI 83 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f 83 (103)
.+.+.|++.+...|.. ....| ..|...+...|+.+...++.+.+-+.+.+.+.+..|-....+..+++.+++.++.+|
T Consensus 322 ~~~~~G~~~~~~~~~~-~~~~~-~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 322 IAIALGIFLAGYVPLA-AVFPT-LAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHH-HHHHh-hCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777766654 34456 567777999999999999999999999999998888666677777788888888888
Q ss_pred cC
Q psy1755 84 IP 85 (103)
Q Consensus 84 ~k 85 (103)
+|
T Consensus 400 ~~ 401 (402)
T TIGR00897 400 IR 401 (402)
T ss_pred hc
Confidence 76
No 25
>TIGR00893 2A0114 d-galactonate transporter.
Probab=96.44 E-value=0.019 Score=42.07 Aligned_cols=78 Identities=15% Similarity=0.049 Sum_probs=55.3
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHh
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTL 82 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~ 82 (103)
-.+.|+..+...|...-+..|...|...+...|+.....++.+++...+.+++.++.+-.+..+......++..++..
T Consensus 89 ~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (399)
T TIGR00893 89 RVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWL 166 (399)
T ss_pred HHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhh
Confidence 457788888899999999999654444578888999999998888888888777766644444444444444444433
No 26
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=96.40 E-value=0.039 Score=41.21 Aligned_cols=83 Identities=17% Similarity=0.102 Sum_probs=55.7
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHH-hh
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLT-LI 83 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~-~f 83 (103)
..+.|++.+...|...-+..|...+..-+...|+.....++.+.+-+.+.+.+.+..+-.+..+..+....+..++. .+
T Consensus 86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (377)
T PRK11102 86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFF 165 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888888888888999965444447888888888888888777777777765554444444444444444443 44
Q ss_pred cCCc
Q psy1755 84 IPPD 87 (103)
Q Consensus 84 ~k~~ 87 (103)
.|++
T Consensus 166 ~~~~ 169 (377)
T PRK11102 166 IPET 169 (377)
T ss_pred CCcc
Confidence 4543
No 27
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=96.36 E-value=0.02 Score=43.13 Aligned_cols=81 Identities=7% Similarity=-0.062 Sum_probs=59.2
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI 83 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f 83 (103)
...+.|++.+...|.......+.+-|...+...|+.....++.+.+-+.+.+++.+..|-.+..+...++.+++.++..+
T Consensus 317 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 317 LRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888887766667888888888888888888888888887766545555555555665555444
Q ss_pred c
Q psy1755 84 I 84 (103)
Q Consensus 84 ~ 84 (103)
.
T Consensus 397 ~ 397 (408)
T PRK09874 397 S 397 (408)
T ss_pred H
Confidence 3
No 28
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=96.34 E-value=0.05 Score=40.37 Aligned_cols=81 Identities=23% Similarity=0.178 Sum_probs=50.0
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhH--HHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTS--SGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI 83 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~s--sgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f 83 (103)
.+.|.+.....|....+..|...+...... .|.....+++.+.+-+.+.+.+.+..+-.+..+....+.++..++..+
T Consensus 95 ~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 95 VLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL 174 (375)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 345667777889888888886533332322 567777777777777777777776655444555545544555444433
Q ss_pred -cCC
Q psy1755 84 -IPP 86 (103)
Q Consensus 84 -~k~ 86 (103)
.|+
T Consensus 175 ~~~~ 178 (375)
T TIGR00899 175 FLPS 178 (375)
T ss_pred hCCC
Confidence 444
No 29
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=96.31 E-value=0.013 Score=45.42 Aligned_cols=69 Identities=19% Similarity=0.199 Sum_probs=49.9
Q ss_pred HHHhhcCCCCchhHHHHHHHHhhhhHH-HHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCCcchh
Q psy1755 22 LAAELTYPEPEGTSSGLLNASAQVFGI-LFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPPDLRR 90 (103)
Q Consensus 22 la~E~tyPv~e~~ssgll~~~~qi~g~-i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~~~kR 90 (103)
.+.|..-|..-++..|+.+..+++.|. +-+.+.+.+.|..|-.+..+.+.+..+++.++.++++++.||
T Consensus 369 ~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (438)
T TIGR00712 369 HALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR 438 (438)
T ss_pred HHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 466754444558899999999998864 567888888887775455566666677777777777776676
No 30
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=96.10 E-value=0.035 Score=41.46 Aligned_cols=73 Identities=16% Similarity=0.278 Sum_probs=51.2
Q ss_pred hhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCCcc
Q psy1755 15 YLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPPDL 88 (103)
Q Consensus 15 ~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~~~ 88 (103)
.....+--+++ .||.+.++..|++-....+.+.++..+..++.+++.+............++++...|+|+.-
T Consensus 113 ~~ta~lvt~~~-NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 113 FNTASLVTCVR-NFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred hhhHHHHHHHH-hCccccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 34445555555 89999999999999999999999999999888774333222111233455666677776653
No 31
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=96.09 E-value=0.089 Score=38.51 Aligned_cols=80 Identities=14% Similarity=0.130 Sum_probs=50.3
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH-HHhhc
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTL-LTLII 84 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~i-l~~f~ 84 (103)
.+.|+..+..++.......| .+|...+...|+.....++.+++...+.+.+.+..+-.+..+......++..+ .+.+.
T Consensus 99 ~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 177 (377)
T TIGR00890 99 GLASAGVGIAYGIALNTAVK-WFPDKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLI 177 (377)
T ss_pred HHHhHHHHHHHHhHHHHHHH-HcCcccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhe
Confidence 46677777777888777777 56777788888888888887776666666665544443444444444444333 34444
Q ss_pred CC
Q psy1755 85 PP 86 (103)
Q Consensus 85 k~ 86 (103)
|+
T Consensus 178 ~~ 179 (377)
T TIGR00890 178 GY 179 (377)
T ss_pred ec
Confidence 43
No 32
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=96.06 E-value=0.089 Score=41.60 Aligned_cols=82 Identities=10% Similarity=0.101 Sum_probs=49.3
Q ss_pred HHHhhhchhHHHHHHHHhhcCCCCc-hhHHHHHHHHhhhhHHHHHHHHHhhhcccch-hHHHHHHHHHHHHHHHHHhhcC
Q psy1755 8 RSFFMTGYLPVGFELAAELTYPEPE-GTSSGLLNASAQVFGILFTVVYGQLFTAFGD-IVANIALCLALVLGTLLTLIIP 85 (103)
Q Consensus 8 ~G~f~~~~~Pi~lEla~E~tyPv~e-~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~il~~f~k 85 (103)
.|++.+...+...-...|+ ||... ++..|+.+..+.+.|.+.+.+.+++.+..+. ....+......+++.+..++.+
T Consensus 352 ~g~~~~~~~g~~~~~~~~~-~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~p 430 (490)
T PRK10642 352 LAVILNCFTGVMASTLPAM-FPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMK 430 (490)
T ss_pred HHHHHHHHHHHHHHHHHHH-CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 3444333444444556674 66554 5667877777888888888888888765543 2233334445555666666676
Q ss_pred Ccchh
Q psy1755 86 PDLRR 90 (103)
Q Consensus 86 ~~~kR 90 (103)
|..||
T Consensus 431 es~~~ 435 (490)
T PRK10642 431 ETANR 435 (490)
T ss_pred cccCC
Confidence 65443
No 33
>PRK12382 putative transporter; Provisional
Probab=96.03 E-value=0.069 Score=40.39 Aligned_cols=81 Identities=19% Similarity=0.066 Sum_probs=59.7
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhc
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLII 84 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~ 84 (103)
..+.|+..+...|...-...|..-|...++..|+.+...++.+.+-+.+.+++.+..|-.+..++.+.+.+++.++..+.
T Consensus 309 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 309 AALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 34567666777787766777766556668999999999999999999999999888775555566666666666665544
Q ss_pred C
Q psy1755 85 P 85 (103)
Q Consensus 85 k 85 (103)
+
T Consensus 389 ~ 389 (392)
T PRK12382 389 F 389 (392)
T ss_pred c
Confidence 3
No 34
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=96.02 E-value=0.11 Score=39.42 Aligned_cols=84 Identities=18% Similarity=0.033 Sum_probs=54.0
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHH-Hh
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLL-TL 82 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il-~~ 82 (103)
.-.+.|+..+...|....+..|...|...+...|+.+...++.+.+-..+...+.+..+-.+..+....+.++.+++ ..
T Consensus 109 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (406)
T PRK11551 109 ARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMR 188 (406)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888899999999996655566888898888888887777666555554444333333333333333333 34
Q ss_pred hcCCc
Q psy1755 83 IIPPD 87 (103)
Q Consensus 83 f~k~~ 87 (103)
++|++
T Consensus 189 ~l~~~ 193 (406)
T PRK11551 189 WLPES 193 (406)
T ss_pred hCCCC
Confidence 45554
No 35
>PRK03633 putative MFS family transporter protein; Provisional
Probab=95.99 E-value=0.065 Score=40.59 Aligned_cols=73 Identities=15% Similarity=-0.051 Sum_probs=51.8
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHH
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLG 77 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 77 (103)
..++|+......|...-.+.|...|.......+..+...++.+++-+.+.+++.|..+..+.-.....+..+.
T Consensus 292 ~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~ 364 (381)
T PRK03633 292 LFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIY 364 (381)
T ss_pred HHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3456776777899999999997655444566777778888999999999999988877544444444444333
No 36
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=95.92 E-value=0.13 Score=38.23 Aligned_cols=61 Identities=20% Similarity=0.096 Sum_probs=46.8
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhH
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIV 65 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~ 65 (103)
-.+.|+..+...|...-+..|...|..-+...|+.....++..++-..+.+.+.+..+..|
T Consensus 107 ~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w 167 (405)
T TIGR00891 107 RLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGW 167 (405)
T ss_pred HHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH
Confidence 3567888888899999999997766555888899888888888887777777766555334
No 37
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=95.89 E-value=0.029 Score=45.15 Aligned_cols=90 Identities=20% Similarity=0.194 Sum_probs=77.4
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchh-HHHHHHHHHHHHHHHHHh
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDI-VANIALCLALVLGTLLTL 82 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~il~~ 82 (103)
...+.|++.+|.....=.+-.++..|..|+.-=|+-+.+|+..++.-+++.+.+.+-.|+. .....+..++.++.+++.
T Consensus 347 ~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~ 426 (438)
T COG2270 347 LGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLL 426 (438)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEE
Confidence 3468999999999999999999999999999999999999999999998888777666653 566777788899999999
Q ss_pred hcCCcchhhhhh
Q psy1755 83 IIPPDLRRQAAH 94 (103)
Q Consensus 83 f~k~~~kR~~~e 94 (103)
++|.+ +|+++|
T Consensus 427 ~v~~~-~~~~~~ 437 (438)
T COG2270 427 RVKVP-GRREAE 437 (438)
T ss_pred eecCC-CCcccc
Confidence 99988 666665
No 38
>PRK11010 ampG muropeptide transporter; Validated
Probab=95.85 E-value=0.11 Score=41.38 Aligned_cols=72 Identities=25% Similarity=0.135 Sum_probs=49.1
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCCcc
Q psy1755 17 PVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPPDL 88 (103)
Q Consensus 17 Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~~~ 88 (103)
+...-+..+++-+.-.++..|+++...++.+.+...+.+++.+..|-.....+...+.+.+.++..+.|++.
T Consensus 335 ~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~~ 406 (491)
T PRK11010 335 AAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQTL 406 (491)
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333444444444455578889999999999898888899998877643444445566677777766666543
No 39
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=95.77 E-value=0.033 Score=43.00 Aligned_cols=83 Identities=13% Similarity=0.134 Sum_probs=57.2
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHH-h
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLT-L 82 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~-~ 82 (103)
...+.|+..+...|...-+..|...|...+...|+.....++.+.+-+.+.+++.++.+-.|..+......++..++. +
T Consensus 96 ~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~ 175 (485)
T TIGR00711 96 FRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFF 175 (485)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHH
Confidence 345678888889999999999976555557888888888888888888888888776665555554444433333333 3
Q ss_pred hcCC
Q psy1755 83 IIPP 86 (103)
Q Consensus 83 f~k~ 86 (103)
+.|+
T Consensus 176 ~~~~ 179 (485)
T TIGR00711 176 ILPR 179 (485)
T ss_pred HcCC
Confidence 3443
No 40
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=95.77 E-value=0.086 Score=39.72 Aligned_cols=83 Identities=10% Similarity=-0.129 Sum_probs=52.9
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHH---HhhhcccchhHHHHHHHHHHHHHHHHH
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVY---GQLFTAFGDIVANIALCLALVLGTLLT 81 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~---~~l~~~~~~~~~~~~~~~~~~~~~il~ 81 (103)
-.+.|+..+...|...-+..|...|...+...|+.....++++++-..+. ....+..+-.+..+......++..+..
T Consensus 134 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~ 213 (481)
T TIGR00879 134 RVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGL 213 (481)
T ss_pred HHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 35678888888999999999977666668888888888888777766665 322233333333333333334444445
Q ss_pred hhcCCc
Q psy1755 82 LIIPPD 87 (103)
Q Consensus 82 ~f~k~~ 87 (103)
++++++
T Consensus 214 ~~l~~~ 219 (481)
T TIGR00879 214 FFLPES 219 (481)
T ss_pred hcCCCC
Confidence 555553
No 41
>PRK09528 lacY galactoside permease; Reviewed
Probab=95.57 E-value=0.096 Score=40.21 Aligned_cols=90 Identities=12% Similarity=0.039 Sum_probs=53.1
Q ss_pred HHHHhhhchhHHHHHHHHhhcCCCCchhHHHH-HHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHH-HHHHhhc
Q psy1755 7 GRSFFMTGYLPVGFELAAELTYPEPEGTSSGL-LNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLG-TLLTLII 84 (103)
Q Consensus 7 l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgl-l~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~il~~f~ 84 (103)
+.|+......+...++..|..-|...++..+. .+..+++.+++-..+.+++.|..|-....+....+.+++ .+...+.
T Consensus 324 l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~ 403 (420)
T PRK09528 324 LHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTL 403 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444456666777786533333333333 456678888888889999998777434444444444433 3445566
Q ss_pred CCcchhhhhhhc
Q psy1755 85 PPDLRRQAAHSD 96 (103)
Q Consensus 85 k~~~kR~~~e~~ 96 (103)
|++.+|.+.+++
T Consensus 404 ~~~~~~~~~~~~ 415 (420)
T PRK09528 404 SGDRELSLLRRQ 415 (420)
T ss_pred cCCchhhHHHhh
Confidence 777666665554
No 42
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=95.49 E-value=0.095 Score=44.62 Aligned_cols=83 Identities=23% Similarity=0.227 Sum_probs=60.3
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCc-hhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPE-GTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI 83 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e-~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f 83 (103)
..++|++.++..|...-+.+|+ ||-.+ ++..|+..+.+.+++++-+.+.+.+.+. +.....++.+++++++.++.++
T Consensus 655 ~~l~g~~~~~~~~~~~a~~aEl-~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~ 732 (742)
T TIGR01299 655 LCLFGGLSIAAWNALDVLTVEL-YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALK 732 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHh
Confidence 3567888888999999999995 77666 7899999999999999999888877653 2222333344555666666667
Q ss_pred cCCcch
Q psy1755 84 IPPDLR 89 (103)
Q Consensus 84 ~k~~~k 89 (103)
+++..+
T Consensus 733 LPET~~ 738 (742)
T TIGR01299 733 LPDTRG 738 (742)
T ss_pred CCCCcc
Confidence 765443
No 43
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=95.37 E-value=0.11 Score=39.97 Aligned_cols=81 Identities=12% Similarity=0.040 Sum_probs=56.3
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCC-chhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhc
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEP-EGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLII 84 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~-e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~ 84 (103)
.+.|++.+...+.......|.+-+.. .+...++.+...|++..+-..+.+. .+..|..+.+++.+.+..+++.+...+
T Consensus 301 ~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (393)
T PRK11195 301 ILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSL-LVKLGVPVVAVIVGFGLLVALAMALLW 379 (393)
T ss_pred HHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35666655555544555556432322 3678889999999998888888774 467888889999888888888777666
Q ss_pred CCc
Q psy1755 85 PPD 87 (103)
Q Consensus 85 k~~ 87 (103)
|-+
T Consensus 380 ~~~ 382 (393)
T PRK11195 380 RWH 382 (393)
T ss_pred HHH
Confidence 554
No 44
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=95.32 E-value=0.12 Score=39.97 Aligned_cols=75 Identities=16% Similarity=0.251 Sum_probs=44.8
Q ss_pred hhHHHHHHHHhhcCCCC-chhHHHHHHHHhhhhHHHHHHHHHhhh------cccchhHHHHHHHHHHHHHHHHHhhcCCc
Q psy1755 15 YLPVGFELAAELTYPEP-EGTSSGLLNASAQVFGILFTVVYGQLF------TAFGDIVANIALCLALVLGTLLTLIIPPD 87 (103)
Q Consensus 15 ~~Pi~lEla~E~tyPv~-e~~ssgll~~~~qi~g~i~~~i~~~l~------~~~~~~~~~~~~~~~~~~~~il~~f~k~~ 87 (103)
..|...-+..|. +|.. -++..|+....+++++++...+...+. ++.+..+..++.....++++++..++.++
T Consensus 381 ~~~~~~~~~~e~-~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 459 (479)
T PRK10077 381 WGPVCWVLLSEI-FPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 459 (479)
T ss_pred ccchhHHHhHhh-CChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhcccc
Confidence 447788888995 6644 488899999988888887765554333 33333334444444445555554444333
Q ss_pred chh
Q psy1755 88 LRR 90 (103)
Q Consensus 88 ~kR 90 (103)
-|+
T Consensus 460 ~~~ 462 (479)
T PRK10077 460 TKG 462 (479)
T ss_pred CCC
Confidence 333
No 45
>PRK11043 putative transporter; Provisional
Probab=95.31 E-value=0.25 Score=37.51 Aligned_cols=81 Identities=16% Similarity=0.091 Sum_probs=49.0
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCc-hhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhc
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPE-GTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLII 84 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e-~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~ 84 (103)
.+.|+..+...+....+..| .||..+ ....+..+...++.+.+.+.+.+.+.+..+-.+..+....+.++..++..++
T Consensus 102 ~l~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 180 (401)
T PRK11043 102 FVQAVGVCSAAVIWQALVID-RYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRL 180 (401)
T ss_pred HHHHhhhHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence 34566555666666666777 455443 4455677777777777777777777776664444444444445555555555
Q ss_pred CCc
Q psy1755 85 PPD 87 (103)
Q Consensus 85 k~~ 87 (103)
+++
T Consensus 181 ~~~ 183 (401)
T PRK11043 181 KPS 183 (401)
T ss_pred CCC
Confidence 554
No 46
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=95.26 E-value=0.22 Score=37.67 Aligned_cols=82 Identities=15% Similarity=0.061 Sum_probs=51.2
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHH-Hhhc
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLL-TLII 84 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il-~~f~ 84 (103)
.+.|+..+...+...-+..|...|..-+...|+.+...++.+.+-+.+.+.+.+..+-.+..++.+.+..+..++ ..+.
T Consensus 99 ~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 178 (392)
T PRK10473 99 FLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFIL 178 (392)
T ss_pred HHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHc
Confidence 456777777788888888885544444677788888888777776666666555555334444444444444333 3445
Q ss_pred CCc
Q psy1755 85 PPD 87 (103)
Q Consensus 85 k~~ 87 (103)
|++
T Consensus 179 ~~~ 181 (392)
T PRK10473 179 KET 181 (392)
T ss_pred CCC
Confidence 554
No 47
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=95.08 E-value=0.13 Score=40.07 Aligned_cols=57 Identities=14% Similarity=0.040 Sum_probs=43.3
Q ss_pred HHHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhccc
Q psy1755 3 LLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAF 61 (103)
Q Consensus 3 v~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~ 61 (103)
+...+.|+|+++++|..+.++.+.. +.....+++.+.+.. ++|.+++.+.+++.|+.
T Consensus 326 ~~l~~~glf~s~~fp~i~sl~~~~~-g~~~~~~s~~l~~~~-~Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 326 YCLTLCSAFMSLMFPTIYGIALKGL-GQDTKYGAAGLVMAI-IGGGIVPPLQGFIIDMK 382 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhhhHHHHHHHH-hccchHHHHHHHHHHHh
Confidence 3456899999999999999999955 433333344444443 99999999999999954
No 48
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=95.07 E-value=0.17 Score=39.35 Aligned_cols=92 Identities=7% Similarity=-0.054 Sum_probs=56.7
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHH-HHhhhhHHHHHHHHHhhhcccch----hHHH-H-HHHHHHHHH
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLN-ASAQVFGILFTVVYGQLFTAFGD----IVAN-I-ALCLALVLG 77 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~-~~~qi~g~i~~~i~~~l~~~~~~----~~~~-~-~~~~~~~~~ 77 (103)
..+.|+......|....+..|..-|...+...|+.+ ...++.+++-+.+.+++.++.|. .|.. | ..+.+..++
T Consensus 315 ~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~ 394 (418)
T TIGR00889 315 MIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAIL 394 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHH
Confidence 345666666667887888888554455578888886 55677888888888888887653 1222 2 233343444
Q ss_pred H-HHHhhcCCcchhhhhhhc
Q psy1755 78 T-LLTLIIPPDLRRQAAHSD 96 (103)
Q Consensus 78 ~-il~~f~k~~~kR~~~e~~ 96 (103)
. ...+++|++-+..+.|++
T Consensus 395 ~~l~~~~~~~~~~~~~~~~~ 414 (418)
T TIGR00889 395 AVLFMIFFKYSHNAIKVDDR 414 (418)
T ss_pred HHHHHHHhCCcccCCCCccc
Confidence 4 445566765444455443
No 49
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=94.99 E-value=0.29 Score=37.59 Aligned_cols=70 Identities=11% Similarity=0.042 Sum_probs=50.7
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHH
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALV 75 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~ 75 (103)
.+.|++.+...|...-+..|..-+...+...|+.....++...+-+.+.+.+.+..|-.+..++...+.+
T Consensus 116 ~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~ 185 (394)
T PRK10213 116 ACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGV 185 (394)
T ss_pred HHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 5678888899999999999965444457888999988888888888888777766554444444333333
No 50
>PRK11010 ampG muropeptide transporter; Validated
Probab=94.99 E-value=0.31 Score=38.87 Aligned_cols=86 Identities=13% Similarity=-0.009 Sum_probs=54.9
Q ss_pred HHHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcc-cchhHHHHHHHHHHHHHHHHH
Q psy1755 3 LLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTA-FGDIVANIALCLALVLGTLLT 81 (103)
Q Consensus 3 v~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~-~~~~~~~~~~~~~~~~~~il~ 81 (103)
+...+.|++.....|..--+..|...|..-+...|+......+..++-..+..++.++ .|-.+..+..+...++..+..
T Consensus 112 ~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~ 191 (491)
T PRK11010 112 ALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIAT 191 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH
Confidence 3455678888888888888899975444446667877777777766666666666663 243334444444555555555
Q ss_pred hhcCCcc
Q psy1755 82 LIIPPDL 88 (103)
Q Consensus 82 ~f~k~~~ 88 (103)
++.|++.
T Consensus 192 ~~~~e~~ 198 (491)
T PRK11010 192 LLAPEPT 198 (491)
T ss_pred HhcCCCc
Confidence 5666653
No 51
>TIGR00895 2A0115 benzoate transport.
Probab=94.98 E-value=0.11 Score=38.35 Aligned_cols=84 Identities=21% Similarity=0.151 Sum_probs=56.2
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHH-HHHHHHHHHHh
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALC-LALVLGTLLTL 82 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~-~~~~~~~il~~ 82 (103)
...+.|+..+...|...-+..|...+...+...|+.....++.+.+-..+.+++.+..|-.+..++.. .......+...
T Consensus 111 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 190 (398)
T TIGR00895 111 LRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMR 190 (398)
T ss_pred HHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHH
Confidence 34567888888899999999996544455788899888888888888888877776655433333332 22233334445
Q ss_pred hcCCc
Q psy1755 83 IIPPD 87 (103)
Q Consensus 83 f~k~~ 87 (103)
+.+++
T Consensus 191 ~~~~~ 195 (398)
T TIGR00895 191 FLPES 195 (398)
T ss_pred hCCCC
Confidence 55554
No 52
>PRK03545 putative arabinose transporter; Provisional
Probab=94.98 E-value=0.31 Score=36.95 Aligned_cols=75 Identities=15% Similarity=0.079 Sum_probs=52.6
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHH
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLL 80 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il 80 (103)
.+.|+......|...-+..|...|...+...|+.....++...+-+.+.+.+.+..|-.+..+....+.++..++
T Consensus 105 ~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~ 179 (390)
T PRK03545 105 IGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLL 179 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Confidence 456666666778888888887766666888899988888888888888777766656545555555444444443
No 53
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=94.96 E-value=0.21 Score=38.26 Aligned_cols=59 Identities=15% Similarity=0.136 Sum_probs=45.8
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCC-CchhHHHHHHHHhhhhHHHHHHHHHhhhcccchh
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPE-PEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDI 64 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv-~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~ 64 (103)
.+.|+..+...|...-...+...|. ..+...|+.+..+++.+.+-+.+.+++.|..|..
T Consensus 300 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~ 359 (393)
T PRK09705 300 MVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNY 359 (393)
T ss_pred HHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 4567777788888777777755543 3367889999999999999999999999887754
No 54
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=94.94 E-value=0.31 Score=36.65 Aligned_cols=80 Identities=19% Similarity=0.162 Sum_probs=51.5
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHH-Hhhc
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLL-TLII 84 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il-~~f~ 84 (103)
.+.|+. ++..|.......+...|...+...|+.....++.+++-+.+.+.+.+..+-.+..+....+.+++.++ ..+.
T Consensus 115 ~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (408)
T PRK09874 115 ALLGLL-GGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCI 193 (408)
T ss_pred HHHHHh-hhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445654 45678777777786555445778888888888888888888887776655444444444444444443 3444
Q ss_pred CC
Q psy1755 85 PP 86 (103)
Q Consensus 85 k~ 86 (103)
|+
T Consensus 194 ~~ 195 (408)
T PRK09874 194 RE 195 (408)
T ss_pred cc
Confidence 44
No 55
>PRK15011 sugar efflux transporter B; Provisional
Probab=94.91 E-value=0.44 Score=36.37 Aligned_cols=69 Identities=14% Similarity=0.134 Sum_probs=48.2
Q ss_pred hHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcC
Q psy1755 16 LPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIP 85 (103)
Q Consensus 16 ~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k 85 (103)
.+.+.-...|+ .|...+...++.+...++.+.+-..+.+.+.+..|-.+..+....+.++++++..+.|
T Consensus 323 ~~~~~~~~~~~-~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 391 (393)
T PRK15011 323 GGIGMLYFQDL-MPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIK 391 (393)
T ss_pred HHHHHHHHHHh-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444555674 4767888999998889999988888888888766543444444556666666666665
No 56
>PRK12307 putative sialic acid transporter; Provisional
Probab=94.83 E-value=0.48 Score=36.05 Aligned_cols=58 Identities=16% Similarity=0.060 Sum_probs=43.5
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG 62 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~ 62 (103)
-.+.|+..+..+|...-+..|...|..-+...|+.....++..++...+.+.+.+..+
T Consensus 113 r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~ 170 (426)
T PRK12307 113 RFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG 170 (426)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC
Confidence 3567888888999999999995544444788888888888888777777666665544
No 57
>PRK03893 putative sialic acid transporter; Provisional
Probab=94.77 E-value=0.15 Score=39.69 Aligned_cols=58 Identities=12% Similarity=0.003 Sum_probs=40.9
Q ss_pred HhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHH
Q psy1755 10 FFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVAN 67 (103)
Q Consensus 10 ~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~ 67 (103)
++..+..++..-+..|...+...+...|+.+..+++++.+-+.+.+.+.++.|..+..
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~ 435 (496)
T PRK03893 378 MLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTAL 435 (496)
T ss_pred HHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHH
Confidence 3333444455556677655555688889999999999998899999888887754433
No 58
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=94.74 E-value=0.15 Score=37.26 Aligned_cols=71 Identities=17% Similarity=0.123 Sum_probs=51.6
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHH
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALV 75 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~ 75 (103)
..+.|++.+...+...-+..|..-|...++..|+.+...++.+.+-+.+.+.+.+..|-.+..+....+.+
T Consensus 302 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~ 372 (377)
T TIGR00890 302 VALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFAL 372 (377)
T ss_pred HHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHH
Confidence 34567777777777777888866566668999999999999999999999988877664333333333333
No 59
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=94.73 E-value=0.18 Score=39.56 Aligned_cols=79 Identities=15% Similarity=0.124 Sum_probs=52.6
Q ss_pred HHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCC
Q psy1755 7 GRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPP 86 (103)
Q Consensus 7 l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~ 86 (103)
+.|+..+...|...-+..+ .||...+...|+......+++.+.+.+.+.+.+..|-.+.-+....+.+++.+.+++.++
T Consensus 117 l~G~~~~~~~~~~~~~~~~-~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~ 195 (455)
T TIGR00892 117 ITGLGLAFNFQPSLTMLGK-YFYRRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRP 195 (455)
T ss_pred HHHhcchhhhhHHHHHHHH-HHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4566666655666666667 567666899999999999999888888888877666444444444444444444445443
No 60
>KOG2504|consensus
Probab=94.73 E-value=0.029 Score=45.68 Aligned_cols=84 Identities=18% Similarity=0.170 Sum_probs=67.9
Q ss_pred hHHHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchh-HHHHHHHHHHHHHHHH
Q psy1755 2 SLLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDI-VANIALCLALVLGTLL 80 (103)
Q Consensus 2 av~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~il 80 (103)
.+.|.++|++.+....+..+...|+-=+..-+.+-|++..+..++.++-+.+.+++.|..++. ....+...+.+++..+
T Consensus 392 ~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~ 471 (509)
T KOG2504|consen 392 IVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVL 471 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHH
Confidence 467889999999999999999999876767799999999999999999999999888877763 2344445566666666
Q ss_pred HhhcC
Q psy1755 81 TLIIP 85 (103)
Q Consensus 81 ~~f~k 85 (103)
+++.+
T Consensus 472 ~~~~~ 476 (509)
T KOG2504|consen 472 LLILR 476 (509)
T ss_pred HHHhH
Confidence 66666
No 61
>PRK03545 putative arabinose transporter; Provisional
Probab=94.70 E-value=0.51 Score=35.77 Aligned_cols=81 Identities=9% Similarity=-0.086 Sum_probs=54.3
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI 83 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f 83 (103)
...+.|+......|.......|. +|...+...|+.+...++...+-..+.+++.++.|-....+....+..++.+...+
T Consensus 300 ~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (390)
T PRK03545 300 LSIFWGIAIMCIGLAMQVKVLKL-APDATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSIL 378 (390)
T ss_pred HHHHHHHHHhcchHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Confidence 34455666555556555566664 57555667788888888888888888888888887766666666666666655444
Q ss_pred cC
Q psy1755 84 IP 85 (103)
Q Consensus 84 ~k 85 (103)
..
T Consensus 379 ~~ 380 (390)
T PRK03545 379 IF 380 (390)
T ss_pred Hc
Confidence 43
No 62
>PTZ00207 hypothetical protein; Provisional
Probab=94.70 E-value=0.29 Score=40.77 Aligned_cols=55 Identities=5% Similarity=0.046 Sum_probs=44.1
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhc
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFT 59 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~ 59 (103)
...+.|+..+...+...-...+ -||...+...|++....++.++++..+...+..
T Consensus 126 ~r~l~G~G~~~~~~~~~~~i~~-~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~ 180 (591)
T PTZ00207 126 YNGLMTLGCMLFDLGAVVTVLS-VFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFS 180 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777777777777 689888999999999999999988888776654
No 63
>PRK03893 putative sialic acid transporter; Provisional
Probab=94.69 E-value=0.43 Score=37.17 Aligned_cols=61 Identities=15% Similarity=0.062 Sum_probs=45.5
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchh
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDI 64 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~ 64 (103)
...+.|++.++..|...-+..|...+..-+...|+.....++.+.+-+.+.+.+.+..+-.
T Consensus 114 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~ 174 (496)
T PRK03893 114 ARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWR 174 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 3456788888888998889999655544467778888888888888887877777655533
No 64
>PRK12307 putative sialic acid transporter; Provisional
Probab=94.54 E-value=0.35 Score=36.85 Aligned_cols=56 Identities=16% Similarity=0.014 Sum_probs=40.7
Q ss_pred hHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHH
Q psy1755 16 LPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALC 71 (103)
Q Consensus 16 ~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~ 71 (103)
.++...+..|...|...++..|+....+++.+.+-+.+.+++.+..|..+..++..
T Consensus 339 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~ 394 (426)
T PRK12307 339 GGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIV 394 (426)
T ss_pred hHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 34444566785555556899999999999999999999999888777544434333
No 65
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=94.51 E-value=0.11 Score=41.00 Aligned_cols=81 Identities=16% Similarity=0.071 Sum_probs=46.9
Q ss_pred HHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccch-hHHHHHHHHHHHHHHHHHhhcCC
Q psy1755 8 RSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGD-IVANIALCLALVLGTLLTLIIPP 86 (103)
Q Consensus 8 ~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~il~~f~k~ 86 (103)
+|++.....+..+-+..| ..|..-++..|+.+..+++.+++...+.+ .+..+. .+..++..++.+++.++.++.|.
T Consensus 358 ~~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~g~lg~~i~~~l~~--~~~~~~y~~~f~~~~~~~~i~~~~~~~~~~ 434 (476)
T PLN00028 358 FSIFVQAACGATFGIVPF-VSRRSLGVISGLTGAGGNVGAVLTQLLFF--TGSSYSTETGISLMGVMIIACTLPVAFIHF 434 (476)
T ss_pred HHHHHHHhhhhhcccCcc-cChhhchhhhhhhhccccHHHHHHHHHHH--hcCCccHhhHHHHHHHHHHHHHHHHHheec
Confidence 344333333333333444 24555578899998888888888776654 112222 23444455667777777777765
Q ss_pred cchhh
Q psy1755 87 DLRRQ 91 (103)
Q Consensus 87 ~~kR~ 91 (103)
..++.
T Consensus 435 ~~~~~ 439 (476)
T PLN00028 435 PQWGG 439 (476)
T ss_pred cchhh
Confidence 44444
No 66
>PRK10489 enterobactin exporter EntS; Provisional
Probab=94.50 E-value=0.31 Score=37.31 Aligned_cols=80 Identities=14% Similarity=0.032 Sum_probs=50.0
Q ss_pred HHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCC
Q psy1755 7 GRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPP 86 (103)
Q Consensus 7 l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~ 86 (103)
+.|++.+...|.......|.+-|...+...++.....++...+-+.+.+.+.+..+..|..+......+++.++...+++
T Consensus 119 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (417)
T PRK10489 119 WDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPA 198 (417)
T ss_pred HHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34555555556666666675544444677788888888888777777777776555545555444555555555555544
No 67
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=94.50 E-value=0.15 Score=39.64 Aligned_cols=79 Identities=13% Similarity=0.124 Sum_probs=54.9
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhccc-chhHHHHHHHHHHHHHHHHHhh
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAF-GDIVANIALCLALVLGTLLTLI 83 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~-~~~~~~~~~~~~~~~~~il~~f 83 (103)
-.+.|+..++..|...-+..|...|..-+...|+.....++.+++-+.+.+.+.+.. +-.+..++.....++..+++++
T Consensus 138 r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~ 217 (465)
T TIGR00894 138 RVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFV 217 (465)
T ss_pred HHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHH
Confidence 356788889999999999999554445588999999999999998888888887663 4333333333333333344433
No 68
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=94.49 E-value=0.5 Score=35.92 Aligned_cols=80 Identities=14% Similarity=0.055 Sum_probs=48.1
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCch-hHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh-
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEG-TSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI- 83 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~-~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f- 83 (103)
.+.|+..+...|...-...|. +|..+. ...|+....+++.+.+-+.+.+.+.+..+-.+..++.+.+.+++.+...+
T Consensus 109 ~l~G~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~ 187 (406)
T PRK15402 109 FLQGIGLCFIGAVGYAAIQES-FEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRA 187 (406)
T ss_pred HHHHhHhhhHHHHHHHHHHHH-hChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHh
Confidence 445666666778888777885 565553 44566666666666666666666666555445555555555555544333
Q ss_pred cCC
Q psy1755 84 IPP 86 (103)
Q Consensus 84 ~k~ 86 (103)
.|+
T Consensus 188 ~~~ 190 (406)
T PRK15402 188 MPE 190 (406)
T ss_pred CCC
Confidence 443
No 69
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=94.46 E-value=0.5 Score=36.04 Aligned_cols=88 Identities=15% Similarity=0.064 Sum_probs=54.9
Q ss_pred HHHHHHhhhchhHHHHHHHHhhc-------CCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc--------hh---HH
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELT-------YPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG--------DI---VA 66 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~t-------yPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~--------~~---~~ 66 (103)
..+.|+..+...|...-+..|+. -+..++...|+.+...++.+.+-..+.+++.+..| +. ..
T Consensus 318 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~~~~~~~~~~~~~~ 397 (437)
T TIGR00792 318 IILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYVANAAQSPITLNGI 397 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCCHHHHHHH
Confidence 35566666666777666666643 13457888999999999998888888887765322 10 11
Q ss_pred H----HHHHHHHHHHHHHHh-hcCCcchhhh
Q psy1755 67 N----IALCLALVLGTLLTL-IIPPDLRRQA 92 (103)
Q Consensus 67 ~----~~~~~~~~~~~il~~-f~k~~~kR~~ 92 (103)
. +..+.+.+++.++.. ++|.+-||.+
T Consensus 398 ~~~~~~~p~i~~~~~~~~~~~~y~l~~~~~~ 428 (437)
T TIGR00792 398 KILMFAVPALFLLLAAIIIGRFYKLTEKKHA 428 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHeeCcHHHHH
Confidence 1 122345566666665 7777655544
No 70
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=94.38 E-value=0.28 Score=39.02 Aligned_cols=83 Identities=12% Similarity=0.035 Sum_probs=53.5
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCC---chhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHh
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEP---EGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTL 82 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~---e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~ 82 (103)
.+.|+..+...|..--+..+...+.+ .+...++.....|+++++-+.+.+++.++.|-.+.-...+..++++.+..+
T Consensus 110 ~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~ 189 (475)
T TIGR00924 110 GTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFF 189 (475)
T ss_pred HHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 34566666677777777777443322 344678889999999999888988888776643343333444445555555
Q ss_pred hcCCcc
Q psy1755 83 IIPPDL 88 (103)
Q Consensus 83 f~k~~~ 88 (103)
+.++++
T Consensus 190 ~~~~~~ 195 (475)
T TIGR00924 190 AGRHML 195 (475)
T ss_pred Hccccc
Confidence 556554
No 71
>PRK10091 MFS transport protein AraJ; Provisional
Probab=94.33 E-value=0.48 Score=35.95 Aligned_cols=33 Identities=9% Similarity=-0.199 Sum_probs=24.1
Q ss_pred CchhHHHHHHHHhhhhHHHHHHHHHhhhcccch
Q psy1755 31 PEGTSSGLLNASAQVFGILFTVVYGQLFTAFGD 63 (103)
Q Consensus 31 ~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~ 63 (103)
+|..+.+..+...++++.+-+.+.+++.|..+.
T Consensus 321 ~~~~~~~~~~~~~~~g~~~Gp~~~G~l~~~~~~ 353 (382)
T PRK10091 321 GELLGAAGGQIAFNLGSAIGAYCGGMMLTLGLA 353 (382)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHHHcccC
Confidence 566666555677788888888888888886544
No 72
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=94.25 E-value=0.64 Score=36.04 Aligned_cols=81 Identities=10% Similarity=-0.001 Sum_probs=50.1
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCC-CchhHHHHHHHHhhhhHHHHHHHHHhhhccc-chhHHHHHHHHHHHHH-HHHHh
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPE-PEGTSSGLLNASAQVFGILFTVVYGQLFTAF-GDIVANIALCLALVLG-TLLTL 82 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv-~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~-~~~~~~~~~~~~~~~~-~il~~ 82 (103)
.+.|++.+...|.......|. +|. ..+...|+.+...++.+.+...+.+...+.. +-.+..+......++. .+.++
T Consensus 126 ~l~g~~~g~~~~~~~~~i~~~-~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~ 204 (438)
T TIGR00712 126 FLNGWFQGMGWPPCGRTMVHW-WSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFA 204 (438)
T ss_pred HHHHHHhhcchHHHHHHHHHh-cCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 356777777788888888884 554 4588999999999998888777666544332 2122223323333333 34455
Q ss_pred hcCCc
Q psy1755 83 IIPPD 87 (103)
Q Consensus 83 f~k~~ 87 (103)
++|++
T Consensus 205 ~~~~~ 209 (438)
T TIGR00712 205 MMRDT 209 (438)
T ss_pred hccCC
Confidence 55553
No 73
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=94.15 E-value=0.23 Score=38.62 Aligned_cols=76 Identities=14% Similarity=0.208 Sum_probs=46.4
Q ss_pred HHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc-hhHHH--HHHHHHHHHHHHHHhhcC
Q psy1755 9 SFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG-DIVAN--IALCLALVLGTLLTLIIP 85 (103)
Q Consensus 9 G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~-~~~~~--~~~~~~~~~~~il~~f~k 85 (103)
|++.+...+.....+.|. -|..-++..|+.+..+++.+++.+.+.+++.++.+ ..|.. .+..+..+++.++..+++
T Consensus 372 ~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 450 (465)
T TIGR00894 372 NAVSSGPLAGVLINSLDL-APRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIFG 450 (465)
T ss_pred HHHhhhhhhhhhhchhhc-ChhHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeeee
Confidence 333333445444455554 36567999999999999999999999998876542 11322 222344455555544443
No 74
>PRK15075 citrate-proton symporter; Provisional
Probab=94.13 E-value=0.5 Score=36.59 Aligned_cols=57 Identities=21% Similarity=0.150 Sum_probs=38.5
Q ss_pred HHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhh-hHHHHHHHHHhhhcccch
Q psy1755 7 GRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQV-FGILFTVVYGQLFTAFGD 63 (103)
Q Consensus 7 l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi-~g~i~~~i~~~l~~~~~~ 63 (103)
+.|++.+...|...-...|...|..-++..|+.+..++. +|.+.+.+.+++.+..|.
T Consensus 340 ~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 340 WLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred HHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 345555555566666778865444456777776666666 488888899988887764
No 75
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=94.07 E-value=0.12 Score=37.85 Aligned_cols=83 Identities=14% Similarity=0.021 Sum_probs=49.8
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHH-HHHhhhcccchhHHHHHHHHHHHH-HHHHHh
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTV-VYGQLFTAFGDIVANIALCLALVL-GTLLTL 82 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~-i~~~l~~~~~~~~~~~~~~~~~~~-~~il~~ 82 (103)
-.+.|++.+...|...-+..|..-+...+...|+.....++++.+... +...+.+..+-.+..+....+..+ +.+.++
T Consensus 90 ~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (379)
T TIGR00881 90 WALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFL 169 (379)
T ss_pred HHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhe
Confidence 356788888888998889999543333467778888888888877773 433344444433444433333333 334444
Q ss_pred hcCCc
Q psy1755 83 IIPPD 87 (103)
Q Consensus 83 f~k~~ 87 (103)
+.|++
T Consensus 170 ~~~~~ 174 (379)
T TIGR00881 170 LLRDS 174 (379)
T ss_pred eeCCC
Confidence 55543
No 76
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=94.05 E-value=0.3 Score=39.15 Aligned_cols=59 Identities=10% Similarity=-0.006 Sum_probs=42.0
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchh---HHHHHHHHhhhhHHHHHHHHHhhhcccchhH
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGT---SSGLLNASAQVFGILFTVVYGQLFTAFGDIV 65 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~---ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~ 65 (103)
.+.|+..+...|...-+..| .||.++.. ..++.++..++++++-+.+.+++.++.|-.+
T Consensus 120 ~l~gig~g~~~~~~~~l~~~-~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~ 181 (500)
T PRK09584 120 ATIAVGNGLFKANPSSLLST-CYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSV 181 (500)
T ss_pred HHHHHhhhcccCCHHHHHHH-hcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHH
Confidence 34566666667777778888 46655433 4567788999999988899998887766433
No 77
>TIGR00898 2A0119 cation transport protein.
Probab=94.03 E-value=0.54 Score=36.84 Aligned_cols=82 Identities=15% Similarity=0.088 Sum_probs=46.8
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI 83 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f 83 (103)
.-.+.|+..++..|...-+..|...|..-+...++...+..++.++.+.+ .....+ -.+..+......++..+..++
T Consensus 186 ~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~-~~~~~~--wr~~~~~~~i~~~~~~~~~~~ 262 (505)
T TIGR00898 186 FRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLV-AYFIPD--WRWLQLAVSLPTFLFFLLSWF 262 (505)
T ss_pred HHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHH-HHHhhH--HHHHHHHHHHHHHHHHHHHHh
Confidence 34678989999999999999996544334566666655544444444433 333322 112333333344445555566
Q ss_pred cCCcc
Q psy1755 84 IPPDL 88 (103)
Q Consensus 84 ~k~~~ 88 (103)
++++.
T Consensus 263 ~~esp 267 (505)
T TIGR00898 263 VPESP 267 (505)
T ss_pred cCCCh
Confidence 76643
No 78
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=94.02 E-value=0.93 Score=34.59 Aligned_cols=82 Identities=15% Similarity=0.045 Sum_probs=48.7
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhccc-chhHHHHHHHHHHHHHHHHHhhc
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAF-GDIVANIALCLALVLGTLLTLII 84 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~-~~~~~~~~~~~~~~~~~il~~f~ 84 (103)
.+.|++.....|..--+..|..-|..-+...++.....++..++-..+...+.+.. |-.+.-++.+...++.....++.
T Consensus 102 ~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~ 181 (402)
T PRK11902 102 VLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTLWA 181 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 44577777788888888899754443466777777666666665566555555543 33333343344444444444556
Q ss_pred CCc
Q psy1755 85 PPD 87 (103)
Q Consensus 85 k~~ 87 (103)
|++
T Consensus 182 ~e~ 184 (402)
T PRK11902 182 PEP 184 (402)
T ss_pred CCC
Confidence 554
No 79
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=93.93 E-value=0.49 Score=34.06 Aligned_cols=80 Identities=23% Similarity=0.166 Sum_probs=56.6
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhc
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLII 84 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~ 84 (103)
..+.|+..+...|...-+..|..-+..-+...|+.....++++.+-+.+.+.+.+..+..+..+......+++.+...+.
T Consensus 94 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (352)
T cd06174 94 RFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFL 173 (352)
T ss_pred HHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888899989999966554558888999999999999998888888776654444444444444444443333
No 80
>PRK09952 shikimate transporter; Provisional
Probab=93.90 E-value=0.71 Score=35.96 Aligned_cols=79 Identities=16% Similarity=0.147 Sum_probs=50.0
Q ss_pred HHHhhhchhHHHHHHHHhhcCCCCc-hhHHHHHHHHhh-hhHHHHHHHHHhhhcccchhH--HHHHHHHHHHHHHHHHhh
Q psy1755 8 RSFFMTGYLPVGFELAAELTYPEPE-GTSSGLLNASAQ-VFGILFTVVYGQLFTAFGDIV--ANIALCLALVLGTLLTLI 83 (103)
Q Consensus 8 ~G~f~~~~~Pi~lEla~E~tyPv~e-~~ssgll~~~~q-i~g~i~~~i~~~l~~~~~~~~--~~~~~~~~~~~~~il~~f 83 (103)
.|+..+...+...-+..| .||... .+..|+.+..++ ++|.+-+.+.+++.+..+..| .-.+.+.+.+++.+..++
T Consensus 353 ~~~~~~~~~~~~~~~~~e-~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~ 431 (438)
T PRK09952 353 ANIAHDMVVCVQQPMFTE-MFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL 431 (438)
T ss_pred HHHHHHHHHHHHHHHHHH-HCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 345555556766777788 566644 557777665555 788888999998877543323 233344556666666666
Q ss_pred cCCc
Q psy1755 84 IPPD 87 (103)
Q Consensus 84 ~k~~ 87 (103)
+|++
T Consensus 432 ~~~~ 435 (438)
T PRK09952 432 MKDN 435 (438)
T ss_pred cccc
Confidence 7653
No 81
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=93.87 E-value=0.5 Score=40.34 Aligned_cols=56 Identities=20% Similarity=0.154 Sum_probs=42.5
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhc
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFT 59 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~ 59 (103)
.-.+.|++.++..|+..-+..|...|..-+...+++.++..+++++-..+..++.+
T Consensus 261 ~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~ 316 (742)
T TIGR01299 261 CRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIP 316 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999997655555778888888887777766665555544
No 82
>PRK15011 sugar efflux transporter B; Provisional
Probab=93.62 E-value=1.2 Score=33.95 Aligned_cols=81 Identities=20% Similarity=0.132 Sum_probs=47.8
Q ss_pred HHHHhhhchhHHHHHHHHhhcCCCCch--hHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHH-Hhh
Q psy1755 7 GRSFFMTGYLPVGFELAAELTYPEPEG--TSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLL-TLI 83 (103)
Q Consensus 7 l~G~f~~~~~Pi~lEla~E~tyPv~e~--~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il-~~f 83 (103)
+.|.+.....|....+..+...+.... .-.|+.....++..++-+.+.+.+.++.|-.+.-+..+...++..++ +.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 193 (393)
T PRK15011 114 FLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLF 193 (393)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhh
Confidence 345555567788888887754333322 23467777888888888888887777665443333334434444444 444
Q ss_pred cCCc
Q psy1755 84 IPPD 87 (103)
Q Consensus 84 ~k~~ 87 (103)
.|++
T Consensus 194 ~~~~ 197 (393)
T PRK15011 194 LPSM 197 (393)
T ss_pred cCcc
Confidence 5554
No 83
>PRK10054 putative transporter; Provisional
Probab=93.58 E-value=0.53 Score=36.16 Aligned_cols=74 Identities=5% Similarity=-0.197 Sum_probs=43.7
Q ss_pred HHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHH
Q psy1755 7 GRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLT 81 (103)
Q Consensus 7 l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~ 81 (103)
+.|.......|..-....|...|..-+...|+.....++++++-+.+.+++.+ .+-.+..+....+.+++.++.
T Consensus 105 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~ 178 (395)
T PRK10054 105 LINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFI 178 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHH
Confidence 34444445566666666776544434666788999999988888888777653 332223333334444444443
No 84
>PRK11663 regulatory protein UhpC; Provisional
Probab=93.57 E-value=0.94 Score=35.13 Aligned_cols=81 Identities=20% Similarity=0.226 Sum_probs=54.5
Q ss_pred HHHHhhhchhHHHHHHHHhhcCCCC-chhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHH-HHHHHHhhc
Q psy1755 7 GRSFFMTGYLPVGFELAAELTYPEP-EGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALV-LGTLLTLII 84 (103)
Q Consensus 7 l~G~f~~~~~Pi~lEla~E~tyPv~-e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~-~~~il~~f~ 84 (103)
+.|++.+...|....+..| .||.. -+...|+.+...++.+.+-+.+.+++.+..|-.+..+..+...+ .+.+..+++
T Consensus 120 l~g~~~g~~~~~~~~~~~~-~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~ 198 (434)
T PRK11663 120 LNAFFQGWGWPVCAKLLTA-WYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRL 198 (434)
T ss_pred HHHHHHHccchHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4577777778888888888 46654 48888999999999998888888888776664334333333322 333344455
Q ss_pred CCcc
Q psy1755 85 PPDL 88 (103)
Q Consensus 85 k~~~ 88 (103)
|++.
T Consensus 199 ~~~p 202 (434)
T PRK11663 199 RDKP 202 (434)
T ss_pred CCCH
Confidence 6543
No 85
>PRK10504 putative transporter; Provisional
Probab=93.53 E-value=0.82 Score=35.45 Aligned_cols=55 Identities=11% Similarity=-0.031 Sum_probs=39.7
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcc
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTA 60 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~ 60 (103)
.+.|+..+..+|...-+..+..-|..++...|+.+...++.+.+-+.+.+.+.+.
T Consensus 361 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~ 415 (471)
T PRK10504 361 FLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGL 415 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666677777777866667788999999988888877777777766543
No 86
>PRK11043 putative transporter; Provisional
Probab=93.48 E-value=1 Score=34.04 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=43.9
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcc
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTA 60 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~ 60 (103)
..+.|+..+..+|...-.+.|. .|...+...|+.+..++..+.....+.+.+.++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 303 FCVMAAANGAIYPIVVAQALRP-FPQATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh-CcccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3456777788888887777774 576678899999999888999888888888764
No 87
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=93.46 E-value=0.52 Score=37.84 Aligned_cols=84 Identities=12% Similarity=0.070 Sum_probs=53.4
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCc---hhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHh
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPE---GTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTL 82 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e---~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~ 82 (103)
.+.|+..+...|...-+..| .||.++ +..-++..+..|+.+++-+.+.+++.++.|-.+.-+.......++.+.+.
T Consensus 113 ~l~~ig~g~~~~~~~~li~~-~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~ 191 (489)
T PRK10207 113 GTIAVGNGLFKANPASLLSK-CYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYF 191 (489)
T ss_pred HHHHhccccccCCHHHHHHH-hcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHH
Confidence 44566667777888888888 566554 33567788899999888888888888777632332222223344444444
Q ss_pred hcCCcchh
Q psy1755 83 IIPPDLRR 90 (103)
Q Consensus 83 f~k~~~kR 90 (103)
+.|+.+++
T Consensus 192 ~~~~~~~~ 199 (489)
T PRK10207 192 ACRGMVKD 199 (489)
T ss_pred Hcchhhcc
Confidence 55555543
No 88
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=93.45 E-value=0.82 Score=36.24 Aligned_cols=82 Identities=12% Similarity=-0.027 Sum_probs=54.5
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCc-hhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHH-Hhh
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPE-GTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLL-TLI 83 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e-~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il-~~f 83 (103)
.+.|+..+...|.......+..+|..+ +...|+.....++...+-+.+.+++.+..|-.|.-+....+.++..++ ..+
T Consensus 102 ~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~ 181 (495)
T PRK14995 102 ALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARY 181 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHh
Confidence 467888888888887777665445333 677888888888888888888888887766555544444444444433 333
Q ss_pred cCCc
Q psy1755 84 IPPD 87 (103)
Q Consensus 84 ~k~~ 87 (103)
.|++
T Consensus 182 l~~~ 185 (495)
T PRK14995 182 VPRQ 185 (495)
T ss_pred CCCC
Confidence 4443
No 89
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=93.42 E-value=0.79 Score=36.25 Aligned_cols=76 Identities=25% Similarity=0.368 Sum_probs=48.4
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc-------hhHHHHHHHHHH-HHHHHHHhhcCCcchh
Q psy1755 19 GFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG-------DIVANIALCLAL-VLGTLLTLIIPPDLRR 90 (103)
Q Consensus 19 ~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~-------~~~~~~~~~~~~-~~~~il~~f~k~~~kR 90 (103)
.+-+++|+..|..|++.-+++....|+.+.+--.+...+.+..+ +.|..+..+.+. ++..+++.+++++ +|
T Consensus 339 ~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~lLp~~-~~ 417 (433)
T PF03092_consen 339 SLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFLLPPQ-KR 417 (433)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHcCCC-ch
Confidence 45679999999999999999999999888766666555543332 234444444333 4444444455554 55
Q ss_pred hhhhh
Q psy1755 91 QAAHS 95 (103)
Q Consensus 91 ~~~e~ 95 (103)
...|.
T Consensus 418 ~~~~~ 422 (433)
T PF03092_consen 418 ITDEL 422 (433)
T ss_pred hhHHH
Confidence 44433
No 90
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=93.41 E-value=0.85 Score=34.46 Aligned_cols=81 Identities=19% Similarity=0.080 Sum_probs=45.9
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCc-hhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHH-HHHHhh
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPE-GTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLG-TLLTLI 83 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e-~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~il~~f 83 (103)
.+.|+..+...|...++..| .+|..+ +...++.....++.+.+-+.+.+.+.+..|-.+..+.......+. .....+
T Consensus 104 ~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 182 (394)
T PRK11652 104 AIQGLGTGVGGVMARTLPRD-LYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARW 182 (394)
T ss_pred HHHHhhhhHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHh
Confidence 45676666677777777777 455433 445566666666666666666666666555444444443333333 333444
Q ss_pred cCCc
Q psy1755 84 IPPD 87 (103)
Q Consensus 84 ~k~~ 87 (103)
.|++
T Consensus 183 ~~~~ 186 (394)
T PRK11652 183 MPET 186 (394)
T ss_pred CCcc
Confidence 5553
No 91
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=93.38 E-value=1.2 Score=34.52 Aligned_cols=46 Identities=7% Similarity=-0.177 Sum_probs=33.1
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHH
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFT 51 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~ 51 (103)
.+.|+..++..|...-+..|..-|..-+...|+......+++++-.
T Consensus 128 ~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~ 173 (479)
T PRK10077 128 IIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVY 173 (479)
T ss_pred HHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHH
Confidence 5678888999999999999966555557777776665555554433
No 92
>TIGR00901 2A0125 AmpG-related permease.
Probab=93.37 E-value=1.2 Score=33.07 Aligned_cols=56 Identities=14% Similarity=-0.134 Sum_probs=40.2
Q ss_pred HHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc
Q psy1755 7 GRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG 62 (103)
Q Consensus 7 l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~ 62 (103)
+.|++.....|..--+..|.+-|..-+...|+.....+++.++-..+...+.+..+
T Consensus 92 ~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g 147 (356)
T TIGR00901 92 LIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEF 147 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 45566666667777778897755555778888888888877777777766665554
No 93
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=93.28 E-value=0.44 Score=38.25 Aligned_cols=92 Identities=13% Similarity=-0.078 Sum_probs=58.0
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhccc------c-h---hHHHHHHHHHH
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAF------G-D---IVANIALCLAL 74 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~------~-~---~~~~~~~~~~~ 74 (103)
-.+.|+--....|.++|++.+...|..-+..+|+.+...|+.+.+-..+.+...... . + .+....++...
T Consensus 386 ~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 465 (489)
T PRK10207 386 YLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVT 465 (489)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHH
Confidence 345677777789999999999888877799999999888887777666665442111 1 1 11112223334
Q ss_pred HHHHHHHhhcCCcchhhhhhhc
Q psy1755 75 VLGTLLTLIIPPDLRRQAAHSD 96 (103)
Q Consensus 75 ~~~~il~~f~k~~~kR~~~e~~ 96 (103)
.++.+++++.++++||.-.++|
T Consensus 466 ~~~~v~~~~~~~~~~~~~~~~~ 487 (489)
T PRK10207 466 LGVAVVMALMVPWLNRMINTPE 487 (489)
T ss_pred HHHHHHHHHHHHHHHHHhcccc
Confidence 4444555555677777644433
No 94
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=93.28 E-value=0.45 Score=37.82 Aligned_cols=86 Identities=13% Similarity=-0.014 Sum_probs=55.2
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhc
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLII 84 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~ 84 (103)
..+.|+--....|.+.++..|.+.|...+...|+......+.+.+-..+.+...+..+..+..-......+++.++..+.
T Consensus 388 ~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (475)
T TIGR00924 388 YLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALM 467 (475)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 34556666668899999999999888889999999888877777766666655444333222222233334444444455
Q ss_pred CCcchh
Q psy1755 85 PPDLRR 90 (103)
Q Consensus 85 k~~~kR 90 (103)
+++.||
T Consensus 468 ~~~~~k 473 (475)
T TIGR00924 468 VPWLNR 473 (475)
T ss_pred HHHHHh
Confidence 554444
No 95
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=93.22 E-value=1.1 Score=34.49 Aligned_cols=75 Identities=15% Similarity=0.064 Sum_probs=50.1
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHH
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLL 80 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il 80 (103)
..+.|+..+...|...-+..|...|..-+...|+.....++...+-+.+.+++. +.+-.+..++.+...++..++
T Consensus 106 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~ 180 (400)
T PRK11646 106 CILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAF 180 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHH
Confidence 345676666667777777778666666688899999999999888888888877 444333334333333333333
No 96
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=93.12 E-value=0.6 Score=35.39 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=45.8
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI 83 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f 83 (103)
.+.|++.+...|..--++.+. +.+.+..-|.....+.+...+-+.+.+.+.++.|-...-+..+...++..++.++
T Consensus 102 ~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 177 (382)
T PRK11128 102 GLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLL 177 (382)
T ss_pred HHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHc
Confidence 446777777888755454443 3344555677777778888888888887777766544444444333333333333
No 97
>PRK10504 putative transporter; Provisional
Probab=93.12 E-value=0.78 Score=35.58 Aligned_cols=79 Identities=15% Similarity=0.065 Sum_probs=52.7
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCc-hhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPE-GTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI 83 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e-~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f 83 (103)
-.+.|+..+...|...-...|. +|..+ +...|+.....++.+.+-+.+.+.+.+..|-.|..+....+..++.++...
T Consensus 105 ~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~ 183 (471)
T PRK10504 105 RVLQGVGGAMMVPVGRLTVMKI-VPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLM 183 (471)
T ss_pred HHHHHhhhHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888899988888885 45333 677888888888888888888888877665434433333333444444333
Q ss_pred c
Q psy1755 84 I 84 (103)
Q Consensus 84 ~ 84 (103)
.
T Consensus 184 ~ 184 (471)
T PRK10504 184 L 184 (471)
T ss_pred h
Confidence 3
No 98
>PRK10133 L-fucose transporter; Provisional
Probab=93.06 E-value=0.6 Score=36.65 Aligned_cols=56 Identities=23% Similarity=0.154 Sum_probs=46.1
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG 62 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~ 62 (103)
..+.|++.+.++|..+-.+.|. +|...++.++++.+ ..+++.+.+.+.+.+.+..|
T Consensus 354 ~~l~glg~~~i~P~~~s~a~~~-~~~~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g 409 (438)
T PRK10133 354 LTLCSAFMSIQYPTIFSLGIKN-LGQDTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc-cchhhccchhHHhH-HhccchHHHHHHHHHHHhcc
Confidence 4578999999999999999995 66666888888864 44678889999998888776
No 99
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=93.05 E-value=0.98 Score=34.33 Aligned_cols=58 Identities=12% Similarity=-0.028 Sum_probs=37.7
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchh
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDI 64 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~ 64 (103)
.+.|+..+...|...... ....|...+...++.+...++.+.+-..+.+++.+..+..
T Consensus 317 ~~~g~g~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 374 (406)
T PRK15402 317 SLYAFGIGLANAGLYRLT-LFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNG 374 (406)
T ss_pred HHHHHHHHHHhhhHHHHH-hhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchH
Confidence 344544444555544443 3345667788999988888888777777777776665653
No 100
>PRK10091 MFS transport protein AraJ; Provisional
Probab=92.98 E-value=1.1 Score=33.99 Aligned_cols=81 Identities=10% Similarity=0.015 Sum_probs=47.0
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCc-hhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHH-Hh
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPE-GTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLL-TL 82 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e-~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il-~~ 82 (103)
-.+.|+..+...|...-...|. +|.++ +...|+.....++.+.+-+.+.+++.+..+-.+..+..+....+..+. ..
T Consensus 98 r~l~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~ 176 (382)
T PRK10091 98 RLVSGFPHGAFFGVGAIVLSKI-IKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYF 176 (382)
T ss_pred HHHHHhhhHHHHHHHHHHHHHh-CChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777776666664 44433 456777777777777776777676666555444444444333333333 33
Q ss_pred hcCC
Q psy1755 83 IIPP 86 (103)
Q Consensus 83 f~k~ 86 (103)
+.++
T Consensus 177 ~lp~ 180 (382)
T PRK10091 177 WVPD 180 (382)
T ss_pred hCCC
Confidence 3444
No 101
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=92.88 E-value=0.73 Score=37.53 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=47.7
Q ss_pred hhHHHHHHHHhhcCCCC---chhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCCcch
Q psy1755 15 YLPVGFELAAELTYPEP---EGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPPDLR 89 (103)
Q Consensus 15 ~~Pi~lEla~E~tyPv~---e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~~~k 89 (103)
..|..--+..| .||.+ .+...++....+|+++++-+.+.+++.++.|-.+..........++.+..++.++.++
T Consensus 117 ~~~~~~alv~e-lfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~ 193 (493)
T PRK15462 117 FKSNVSCLLGE-LYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFT 193 (493)
T ss_pred ccccHHHHHHH-HCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 33544556778 56654 4667889999999999999999999887776444433333334445444444444443
No 102
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=92.84 E-value=0.68 Score=35.17 Aligned_cols=60 Identities=18% Similarity=0.261 Sum_probs=45.0
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHH
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVAN 67 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~ 67 (103)
.+.|.+.++..|...-++.+ ++...+..-|.+...+.++.++-+.+.+++.+..|-.+..
T Consensus 102 ~l~~~~~~~~~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f 161 (382)
T TIGR00902 102 GLFALFFSAGMPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNIL 161 (382)
T ss_pred HHHHHHHccchhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHH
Confidence 34677777888887777765 4455577788999999998888888888888876654433
No 103
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=92.79 E-value=1.4 Score=33.34 Aligned_cols=53 Identities=21% Similarity=0.138 Sum_probs=41.3
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhc
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFT 59 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~ 59 (103)
.+.|+..+...|.....+.| ..|...++.+++.+...++++.+-..+.+.+..
T Consensus 307 ~~~~~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~ 359 (394)
T PRK11652 307 ALFFFGAGMLFPLATSGAME-PFPYLAGTAGALLGGLQNIGSGLAALLSAMLPQ 359 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHh-hccccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 45566667788999998988 457778999999999988888887777765543
No 104
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=92.74 E-value=0.21 Score=40.42 Aligned_cols=87 Identities=23% Similarity=0.213 Sum_probs=57.4
Q ss_pred HHHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHH-HHhhhcccchhHHHHHHHHHHHHHHHHH
Q psy1755 3 LLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVV-YGQLFTAFGDIVANIALCLALVLGTLLT 81 (103)
Q Consensus 3 v~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i-~~~l~~~~~~~~~~~~~~~~~~~~~il~ 81 (103)
++...+||+..+-.=+.=-.|+|+..--.-++++|+.-.++-++|.++--. .+++.|+.|=....+++.++.+++.++.
T Consensus 351 ~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll 430 (448)
T COG2271 351 ILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLL 430 (448)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHH
Confidence 455678998776555555578999988899999999999999977765332 3444555443345566655555555443
Q ss_pred -hhcCCcch
Q psy1755 82 -LIIPPDLR 89 (103)
Q Consensus 82 -~f~k~~~k 89 (103)
.+.+.+-|
T Consensus 431 ~~~~~~~~~ 439 (448)
T COG2271 431 LPVWNAEER 439 (448)
T ss_pred HHHHhhcch
Confidence 33444433
No 105
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=92.68 E-value=1.1 Score=34.43 Aligned_cols=80 Identities=18% Similarity=0.039 Sum_probs=49.4
Q ss_pred HHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH-HHhhcC
Q psy1755 7 GRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTL-LTLIIP 85 (103)
Q Consensus 7 l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~i-l~~f~k 85 (103)
+.|+.... .+...-..+|...|...+...|+.....++++.+-..+..++.++.|-.+..+......++..+ ...++|
T Consensus 88 l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp 166 (368)
T TIGR00903 88 LAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALP 166 (368)
T ss_pred HHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44555543 4444555678666655588899999888888888877777777665544444444444434333 444566
Q ss_pred Cc
Q psy1755 86 PD 87 (103)
Q Consensus 86 ~~ 87 (103)
++
T Consensus 167 ~~ 168 (368)
T TIGR00903 167 AL 168 (368)
T ss_pred CC
Confidence 54
No 106
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=92.18 E-value=1.4 Score=32.71 Aligned_cols=59 Identities=14% Similarity=-0.035 Sum_probs=35.7
Q ss_pred HHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHH
Q psy1755 7 GRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVA 66 (103)
Q Consensus 7 l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~ 66 (103)
+.|+..+...+.......| .+|...+...|+.....++.+.+-..+...+.+..+..|.
T Consensus 96 ~~g~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~ 154 (355)
T TIGR00896 96 LIGVGIAIINVLLPSLIKR-DFPQRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQ 154 (355)
T ss_pred HHHHHHHHHhccchHHHHH-hCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 4455555444444444555 6676557788888887777777666666666554443343
No 107
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=92.15 E-value=1.8 Score=33.40 Aligned_cols=54 Identities=13% Similarity=0.012 Sum_probs=41.9
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhc
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFT 59 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~ 59 (103)
.+.|++.++..|....+..|...|...+...|+.+....+++++-..+.+.+.+
T Consensus 104 ~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~ 157 (412)
T TIGR02332 104 ILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILA 157 (412)
T ss_pred HHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567999999999999999995444445788899888888877777777776654
No 108
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=92.14 E-value=1.2 Score=38.69 Aligned_cols=83 Identities=17% Similarity=0.099 Sum_probs=60.2
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI 83 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f 83 (103)
...+.|++.....|...-+..+...+..-+...|+..+..++..++-+.+.+++.+..+..+..+....+.+++.++..+
T Consensus 114 ~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (1140)
T PRK06814 114 ALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLF 193 (1140)
T ss_pred HHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhh
Confidence 45667888888999999999997777666889999999999999999999998887655433332223333444444555
Q ss_pred cCC
Q psy1755 84 IPP 86 (103)
Q Consensus 84 ~k~ 86 (103)
+++
T Consensus 194 ~~~ 196 (1140)
T PRK06814 194 IPK 196 (1140)
T ss_pred CCC
Confidence 544
No 109
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=92.10 E-value=1.6 Score=33.38 Aligned_cols=57 Identities=12% Similarity=-0.075 Sum_probs=35.4
Q ss_pred HHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHH-HHHHHHHhhhcccch
Q psy1755 7 GRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGI-LFTVVYGQLFTAFGD 63 (103)
Q Consensus 7 l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~-i~~~i~~~l~~~~~~ 63 (103)
+.|+......|...-...+...|..-+...|+.....++... +-+.+.+.+.+..|.
T Consensus 114 i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~ 171 (402)
T TIGR00897 114 IRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGE 171 (402)
T ss_pred HHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch
Confidence 345555555555555566755565568888888888777653 345555566665553
No 110
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=92.03 E-value=1.6 Score=34.37 Aligned_cols=81 Identities=21% Similarity=0.302 Sum_probs=57.6
Q ss_pred HHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHH-hhhhHHHHHHHHHhhhcccchh----H-HHHHHHHH--HHHHHH
Q psy1755 8 RSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNAS-AQVFGILFTVVYGQLFTAFGDI----V-ANIALCLA--LVLGTL 79 (103)
Q Consensus 8 ~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~-~qi~g~i~~~i~~~l~~~~~~~----~-~~~~~~~~--~~~~~i 79 (103)
-|+......+.+..+..|.+.|.-.++..|+.... .++++.+-..+.|++.|+.|.. | ..|...++ +....+
T Consensus 311 hG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~ 390 (400)
T PF03825_consen 311 HGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVL 390 (400)
T ss_pred hhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence 47777778899999999988888889999998875 4677777788899999887743 2 22322222 233345
Q ss_pred HHhhcCCcc
Q psy1755 80 LTLIIPPDL 88 (103)
Q Consensus 80 l~~f~k~~~ 88 (103)
.++++|++-
T Consensus 391 f~~~fk~~~ 399 (400)
T PF03825_consen 391 FVILFKPKH 399 (400)
T ss_pred HHhhccCCC
Confidence 566677764
No 111
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=91.94 E-value=2.2 Score=32.53 Aligned_cols=80 Identities=18% Similarity=0.195 Sum_probs=47.5
Q ss_pred HHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCCcc
Q psy1755 9 SFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPPDL 88 (103)
Q Consensus 9 G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~~~ 88 (103)
|+......+....+..+ .+| ++.-++.....++.+++...+.+.+.|..|-.+.......+..+++++....+.+-
T Consensus 318 g~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~~~~~ 393 (402)
T PRK11902 318 GMGTAAFVALLMALCNR-SFS---ATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLMRGTI 393 (402)
T ss_pred HHHHHHHHHHHHHhcCC-CCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34444555555556555 455 33445555555666666666778888887765555555556666666665555555
Q ss_pred hhhh
Q psy1755 89 RRQA 92 (103)
Q Consensus 89 kR~~ 92 (103)
||.|
T Consensus 394 ~~~~ 397 (402)
T PRK11902 394 GRYE 397 (402)
T ss_pred cccc
Confidence 5533
No 112
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=91.81 E-value=2.5 Score=33.50 Aligned_cols=49 Identities=12% Similarity=-0.031 Sum_probs=37.1
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHH
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVY 54 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~ 54 (103)
.+.|+..+...|...-+..|...|..-+...++...+.+++.++-..+.
T Consensus 123 ~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~ 171 (502)
T TIGR00887 123 FWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVA 171 (502)
T ss_pred HHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999966666668888888777766654444443
No 113
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=91.64 E-value=1.9 Score=33.07 Aligned_cols=55 Identities=22% Similarity=0.172 Sum_probs=44.2
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcc
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTA 60 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~ 60 (103)
.+.|+......|...-+..|...|..-+...|++....++..++-+.+.+++.+.
T Consensus 96 ~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~ 150 (393)
T PRK11195 96 GLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP 150 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999976665568889998888887777777777777653
No 114
>PRK03699 putative transporter; Provisional
Probab=91.63 E-value=2.2 Score=32.50 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=37.1
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCc-hhHHHHHHHHhhhhHHHHHHHHHhhhcc
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPE-GTSSGLLNASAQVFGILFTVVYGQLFTA 60 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e-~~ssgll~~~~qi~g~i~~~i~~~l~~~ 60 (103)
.+.|++.+...|...-...|. +|..+ +...++.....++.+.+.+.+.+++.++
T Consensus 103 ~l~G~~~g~~~~~~~~~i~~~-~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 157 (394)
T PRK03699 103 FVLGVVSGITMSIGTFLITHV-YEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR 157 (394)
T ss_pred HHHHHhhHhhccchhHHhhhh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777777777777777884 46544 5556666677777788888777776543
No 115
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=91.58 E-value=1.1 Score=36.03 Aligned_cols=44 Identities=14% Similarity=-0.037 Sum_probs=32.9
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHH
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGI 48 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~ 48 (103)
..+.|+.-....|+++++..+.+.|.-.+...|+.....-+.+.
T Consensus 389 ~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~ 432 (500)
T PRK09584 389 YGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAAL 432 (500)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 35567777889999999999999998889998855433333333
No 116
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=91.48 E-value=3.4 Score=30.51 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=39.0
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHh
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQ 56 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~ 56 (103)
.+.|+......|...-...| .+|..-++..++.+...+..|.+...+.+.
T Consensus 308 ~~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~g~i~~~~~~~ 357 (385)
T TIGR00710 308 MFVGIGNSMISSIAMAYALE-DFPHVAGTASALFGTLRLVLGAIVGYLVSL 357 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhc-cCcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666677788888888888 467666888999998888888888887773
No 117
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=91.38 E-value=3.2 Score=30.45 Aligned_cols=49 Identities=18% Similarity=0.074 Sum_probs=31.1
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHH
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVY 54 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~ 54 (103)
.+.|+..+...|...-+..|...+..-+...++......++.++-..+.
T Consensus 104 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~ 152 (394)
T TIGR00883 104 LIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTV 152 (394)
T ss_pred HHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777778888865554446667776666665555444443
No 118
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=90.69 E-value=0.73 Score=33.56 Aligned_cols=58 Identities=14% Similarity=-0.136 Sum_probs=46.0
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhccc
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAF 61 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~ 61 (103)
...+.|++.+...|....+..|..-|...+...|+.+...++.+.+-+.+.+.+.|..
T Consensus 307 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~ 364 (365)
T TIGR00900 307 LWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL 364 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4456788888888888888888766666688889999999988888888888777654
No 119
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=90.56 E-value=2.9 Score=33.37 Aligned_cols=85 Identities=21% Similarity=0.112 Sum_probs=61.3
Q ss_pred HHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCC
Q psy1755 7 GRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPP 86 (103)
Q Consensus 7 l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~ 86 (103)
+.|+...+..+...--.+| .-|...+...++.....|+.-.+=-.+-+.+.++.|-...-|.-....+++..+.+..+.
T Consensus 309 ~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 309 LWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555555555555555555 668888999999999999988777777777888877666666666677777777777777
Q ss_pred cchhhh
Q psy1755 87 DLRRQA 92 (103)
Q Consensus 87 ~~kR~~ 92 (103)
++||++
T Consensus 388 ~~~~~~ 393 (394)
T COG2814 388 KDRRTA 393 (394)
T ss_pred cccccC
Confidence 766653
No 120
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=90.45 E-value=1.6 Score=33.62 Aligned_cols=56 Identities=18% Similarity=-0.003 Sum_probs=42.2
Q ss_pred HHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc
Q psy1755 7 GRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG 62 (103)
Q Consensus 7 l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~ 62 (103)
+.|.......|...-+..|...|...+...|+.+...++++.+-+.+.+++.++.+
T Consensus 306 l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~ 361 (400)
T PRK11646 306 LFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK 361 (400)
T ss_pred HHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 34444555567767777787767777999999999888888888888888877643
No 121
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=90.45 E-value=0.76 Score=33.58 Aligned_cols=58 Identities=28% Similarity=0.280 Sum_probs=45.1
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG 62 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~ 62 (103)
..+.|++..+..+...-...|...|...++..|+.+..+++++.+-+.+.+.+.++.|
T Consensus 317 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 374 (379)
T TIGR00881 317 LFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG 374 (379)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc
Confidence 3456766666666666778887666666999999999999999998888888887655
No 122
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=90.30 E-value=0.86 Score=33.84 Aligned_cols=58 Identities=10% Similarity=0.075 Sum_probs=47.3
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccch
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGD 63 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~ 63 (103)
.+.|++..+..++...+..|..-|...++..|+.+..+++.+.+-+.+.+++.++.|.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~ 393 (405)
T TIGR00891 336 FFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDE 393 (405)
T ss_pred HHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4556677777777777888966555568999999999999999999999999988775
No 123
>PRK10054 putative transporter; Provisional
Probab=89.64 E-value=3.4 Score=31.69 Aligned_cols=76 Identities=17% Similarity=0.116 Sum_probs=48.0
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHH
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLT 81 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~ 81 (103)
..+.|+......|....+..+...|...++..|..+ .++++..+-+.+.+.+.|+.|.....+.+.++..+..++.
T Consensus 305 ~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 380 (395)
T PRK10054 305 AAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLM 380 (395)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHH
Confidence 344555555567777777778776665566655443 5557778888888888888776555554444444444433
No 124
>PRK12382 putative transporter; Provisional
Probab=89.57 E-value=5.5 Score=30.01 Aligned_cols=57 Identities=14% Similarity=-0.045 Sum_probs=39.0
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG 62 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~ 62 (103)
.+.|+......|.......|...|...+...|+.....+....+-+.+.+.+.+..|
T Consensus 120 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g 176 (392)
T PRK12382 120 LILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFG 176 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 356666666777777778887766666778888777666666666666666655544
No 125
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=89.47 E-value=5.6 Score=29.80 Aligned_cols=55 Identities=13% Similarity=-0.109 Sum_probs=44.9
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhc
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFT 59 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~ 59 (103)
..+.|.-.....+...=+.+.+.-|...+..-+++..+..++.++-+.+.+.+..
T Consensus 17 ~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~ 71 (310)
T TIGR01272 17 LFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLIL 71 (310)
T ss_pred HHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3456666777888888888998877777888899999999999999999988774
No 126
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=89.32 E-value=5.2 Score=30.53 Aligned_cols=56 Identities=13% Similarity=-0.097 Sum_probs=39.8
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhccc
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAF 61 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~ 61 (103)
-.+.|+..+...|....+..| .||...+...|+........+.+-..+.+.+.++.
T Consensus 104 r~l~Gig~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~ 159 (393)
T PRK09705 104 ALLGGVGIGIIQAVMPSVIKR-RFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQHS 159 (393)
T ss_pred HHHHHhHHHHHhhhhhHHHHH-HccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356788888888888888777 57855577888877766666666666666666554
No 127
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=89.31 E-value=4.9 Score=31.05 Aligned_cols=73 Identities=19% Similarity=0.103 Sum_probs=41.1
Q ss_pred hHHHHHHHHhhcCCCCchhHHHHHHHHhhhh-HHHHHHHHHhhhcccchh-HHHHHHHHHHHHHHHHHhhcCCcch
Q psy1755 16 LPVGFELAAELTYPEPEGTSSGLLNASAQVF-GILFTVVYGQLFTAFGDI-VANIALCLALVLGTLLTLIIPPDLR 89 (103)
Q Consensus 16 ~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~-g~i~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~il~~f~k~~~k 89 (103)
.+...-+..|...|..-++..|+.+..+++. +..-+.+.+ +.++.|.. ...++.+.+.+++.+..++++++-|
T Consensus 354 ~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~-~l~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~ 428 (432)
T PRK10406 354 TSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVAL-SLKSIGMETAFFWYVTLMAVVAFLVSLMLHRKGK 428 (432)
T ss_pred HHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHH-HHHHhCCCcHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3444556778544444689999999888863 554555555 44444432 2233344555555555555655433
No 128
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=88.97 E-value=6.2 Score=29.03 Aligned_cols=49 Identities=14% Similarity=-0.008 Sum_probs=29.5
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHH
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYG 55 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~ 55 (103)
.+.|+.. +.++...-+..|...|...+...++....+++.+.+-..+..
T Consensus 99 ~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 147 (366)
T TIGR00886 99 LFIGIAG-GSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMP 147 (366)
T ss_pred HHHHHhc-hhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 4456653 345666777788554444577778777666666554444443
No 129
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=88.91 E-value=6.1 Score=29.85 Aligned_cols=77 Identities=13% Similarity=-0.067 Sum_probs=38.5
Q ss_pred HhhhchhHHHHHHHHhhcCCCCc-hhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCCc
Q psy1755 10 FFMTGYLPVGFELAAELTYPEPE-GTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPPD 87 (103)
Q Consensus 10 ~f~~~~~Pi~lEla~E~tyPv~e-~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~~ 87 (103)
++.....|..=-++.|.. +..+ +..++.......++.++-....+++.++.|-....+....+.++..+..++.+++
T Consensus 109 ~~~a~~d~~~d~~~~~~~-~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~ 186 (390)
T TIGR02718 109 LASATQDIATDGMAAEHF-NGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDR 186 (390)
T ss_pred HHHHHHHHHHHHHHHHhC-CHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344444444444666633 3333 4445555544444544444455556666564444444444555555555556554
No 130
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=88.71 E-value=6.4 Score=30.44 Aligned_cols=81 Identities=11% Similarity=0.025 Sum_probs=44.5
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCc-hhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHH-Hhh
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPE-GTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLL-TLI 83 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e-~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il-~~f 83 (103)
.+.|+......+...-...| .||..+ +...++.....++...+-+.+.+.+.+..|-.+.-+......+++.++ +.+
T Consensus 112 ~l~Gi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~ 190 (413)
T PRK15403 112 FIQGTSICFIATVGYVTVQE-AFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLA 190 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34565554445555544455 677655 455677777777777666666666655444334444444444444444 334
Q ss_pred cCCc
Q psy1755 84 IPPD 87 (103)
Q Consensus 84 ~k~~ 87 (103)
.|++
T Consensus 191 lp~~ 194 (413)
T PRK15403 191 MPET 194 (413)
T ss_pred CCCC
Confidence 5543
No 131
>KOG0569|consensus
Probab=88.66 E-value=4.1 Score=33.38 Aligned_cols=86 Identities=15% Similarity=0.138 Sum_probs=57.7
Q ss_pred HHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCCc
Q psy1755 8 RSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPPD 87 (103)
Q Consensus 8 ~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~~ 87 (103)
.-.|..+.=|+..=+.+|+-.|-+-+.+.++.....-+..++..+.+-.+.+-.|....-++.+.+....+.++..++|.
T Consensus 378 ~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPET 457 (485)
T KOG0569|consen 378 IISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPET 457 (485)
T ss_pred HHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCccc
Confidence 44456678899999999988888888888877777777777666666555555566333333344555555566667776
Q ss_pred chhhhh
Q psy1755 88 LRRQAA 93 (103)
Q Consensus 88 ~kR~~~ 93 (103)
-+|.-.
T Consensus 458 kgr~~~ 463 (485)
T KOG0569|consen 458 KGRTPY 463 (485)
T ss_pred CCCCHH
Confidence 556433
No 132
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=88.60 E-value=3.1 Score=36.26 Aligned_cols=55 Identities=15% Similarity=0.015 Sum_probs=44.6
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhc
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFT 59 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~ 59 (103)
..++|++.+...+...-+..+.+-|..-+...|+.+..+++++.+...+.+.+.+
T Consensus 341 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 341 LFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred HHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888887888888888897777777999999999999988888888777664
No 133
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=88.52 E-value=5.1 Score=34.62 Aligned_cols=57 Identities=23% Similarity=0.187 Sum_probs=44.4
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcc
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTA 60 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~ 60 (103)
...+.|++.+...|...-+..|.+-|..-+...|+.....+++.++-..+.+++.+.
T Consensus 109 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 109 VTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678888888899999999987666568889999988888777777777766544
No 134
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=88.23 E-value=5.5 Score=31.66 Aligned_cols=54 Identities=15% Similarity=-0.002 Sum_probs=41.6
Q ss_pred HHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc
Q psy1755 9 SFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG 62 (103)
Q Consensus 9 G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~ 62 (103)
++..+..+...+-++.|.+.|..|++..++++...++.+.+-..+.+.+.+..|
T Consensus 362 ~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 362 EVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444344444458899999999999999999999999999888877666665544
No 135
>KOG0252|consensus
Probab=88.11 E-value=1 Score=37.19 Aligned_cols=72 Identities=26% Similarity=0.325 Sum_probs=54.7
Q ss_pred HHhhcCCCC-chhHHHHHHHHhhhhHHHHHHHHHhhhc-----ccchhHHHHHHHHHHHHHHHHHhhcCCcchhhhhhhc
Q psy1755 23 AAELTYPEP-EGTSSGLLNASAQVFGILFTVVYGQLFT-----AFGDIVANIALCLALVLGTLLTLIIPPDLRRQAAHSD 96 (103)
Q Consensus 23 a~E~tyPv~-e~~ssgll~~~~qi~g~i~~~i~~~l~~-----~~~~~~~~~~~~~~~~~~~il~~f~k~~~kR~~~e~~ 96 (103)
.+| .||-. -++.-|+--++|-.+.++-...++++.+ ..+..+..|.++++.+++.+..++++|. ||+++|+.
T Consensus 431 paE-~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEt-k~~~leei 508 (538)
T KOG0252|consen 431 PAE-IFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPET-KGKSLEEI 508 (538)
T ss_pred ehh-hchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecc-cccCHHHh
Confidence 356 44543 3777888888999999988888888887 3456678888899999999999999955 55555554
No 136
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=88.03 E-value=9 Score=30.26 Aligned_cols=39 Identities=15% Similarity=0.122 Sum_probs=28.7
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhh
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQ 44 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~q 44 (103)
.+.|+..++.+|...-+..|...|..-+...++....+.
T Consensus 126 ~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~ 164 (490)
T PRK10642 126 MAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSI 164 (490)
T ss_pred HHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Confidence 467999999999999999995444455677776655443
No 137
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=88.01 E-value=7.5 Score=30.03 Aligned_cols=87 Identities=22% Similarity=0.197 Sum_probs=49.5
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcC
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIP 85 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k 85 (103)
.+.|+..+...|...-.+.+ ..+.+.++.+++........+..-....+++.+. +..+..... .++++.++...++
T Consensus 320 ~l~~~G~~~~~p~~~~~al~-~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~--~~~~~~~~~~~~~ 395 (413)
T PRK15403 320 SLYAFGIGLIFPTLFRFTLF-SNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLL--AVVAGVIVVFTLA 395 (413)
T ss_pred HHHHHHHHHHhHHHHHHHhc-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHH--HHHHHHHHHHHHH
Confidence 34555556667777665543 5566678888888887777776666666655544 332222222 2222233444556
Q ss_pred Ccchhhhhhhc
Q psy1755 86 PDLRRQAAHSD 96 (103)
Q Consensus 86 ~~~kR~~~e~~ 96 (103)
.+.||.++|+.
T Consensus 396 ~~~~~~~~~~~ 406 (413)
T PRK15403 396 GLLNRVRQHQA 406 (413)
T ss_pred HHHhhhhhhhh
Confidence 66666665554
No 138
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=87.54 E-value=5.1 Score=30.21 Aligned_cols=58 Identities=5% Similarity=-0.337 Sum_probs=37.6
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccch
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGD 63 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~ 63 (103)
.+.|+......|...-...|...+...+...|+.....++...+-..+.+.+.+..|-
T Consensus 120 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~ 177 (399)
T PRK05122 120 LLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGL 177 (399)
T ss_pred HHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccH
Confidence 3567777777787777778876565557777776666555555555555666655553
No 139
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=87.33 E-value=2.1 Score=31.41 Aligned_cols=59 Identities=20% Similarity=0.116 Sum_probs=40.6
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHH-hhhhHHHHHHHHHhhhcccch
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNAS-AQVFGILFTVVYGQLFTAFGD 63 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~-~qi~g~i~~~i~~~l~~~~~~ 63 (103)
..+.|++.+...|...-+..|...+...+...|+.... +.+.+.+-+.+.+++.++.|.
T Consensus 319 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~ 378 (394)
T TIGR00883 319 VLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGD 378 (394)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCc
Confidence 34567777778888888889965444446666765444 445666778888888887774
No 140
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=87.22 E-value=3 Score=34.76 Aligned_cols=54 Identities=13% Similarity=0.054 Sum_probs=39.2
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhh
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLF 58 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~ 58 (103)
-.+.|+..++.+|++.-+..|..-|..-+...|+......++.++-..+.+++.
T Consensus 179 r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~ 232 (633)
T TIGR00805 179 QLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCL 232 (633)
T ss_pred HHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 357888999999999999999655555577778877776666555555555444
No 141
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=86.97 E-value=12 Score=28.82 Aligned_cols=36 Identities=8% Similarity=0.021 Sum_probs=27.6
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHH
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNA 41 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~ 41 (103)
.+.|+..++..|...-+..|...|...+...++...
T Consensus 132 ~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~ 167 (432)
T PRK10406 132 LFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYV 167 (432)
T ss_pred HHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHH
Confidence 467888899999999999997666655666665543
No 142
>PRK09952 shikimate transporter; Provisional
Probab=86.93 E-value=13 Score=28.95 Aligned_cols=44 Identities=18% Similarity=-0.007 Sum_probs=30.4
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHH
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGIL 49 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i 49 (103)
.+.|+..++.+|...-+..|...|...+...+.......++.++
T Consensus 133 ~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l 176 (438)
T PRK09952 133 AIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLL 176 (438)
T ss_pred HHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 45788999999999999999554444466666666555544433
No 143
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=86.33 E-value=10 Score=28.56 Aligned_cols=52 Identities=12% Similarity=0.094 Sum_probs=37.9
Q ss_pred hhchhHHHHHHHHhhcCC-CCchhHHHHHHHHhhhhHHHHHHHHHhhhcccch
Q psy1755 12 MTGYLPVGFELAAELTYP-EPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGD 63 (103)
Q Consensus 12 ~~~~~Pi~lEla~E~tyP-v~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~ 63 (103)
.+...+...-...+..-| ...++..++.+...++.+.+-+.+.+++.+..|-
T Consensus 317 ~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~ 369 (390)
T TIGR02718 317 TGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGY 369 (390)
T ss_pred HHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344445555555555544 5568888999999999999999999998887664
No 144
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=85.88 E-value=10 Score=29.07 Aligned_cols=59 Identities=7% Similarity=-0.119 Sum_probs=38.9
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchh
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDI 64 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~ 64 (103)
..+.|+..+...|..--+..+.+ |...+...++.....++...+-..+.+++.|..|..
T Consensus 312 ~~l~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~ 370 (394)
T PRK10213 312 AIIWGLTFALVPVGWSTWITRSL-ADQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLT 370 (394)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh
Confidence 34456555444444444666755 544456677777777888888888899988877653
No 145
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=85.67 E-value=4.6 Score=33.09 Aligned_cols=85 Identities=20% Similarity=0.124 Sum_probs=57.4
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI 83 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f 83 (103)
...+.|.+..-..|.---.--|+.-+..-....++.....|+..++-+.+-+.+....|..+..++-+.+.+++..++..
T Consensus 109 ~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~ 188 (524)
T PF05977_consen 109 LTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLR 188 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777766777777777787644343566778888888888888888887777667655555555555555556666
Q ss_pred cCCcc
Q psy1755 84 IPPDL 88 (103)
Q Consensus 84 ~k~~~ 88 (103)
.|++.
T Consensus 189 ~~~~~ 193 (524)
T PF05977_consen 189 WKPPP 193 (524)
T ss_pred ccccc
Confidence 66644
No 146
>PRK09528 lacY galactoside permease; Reviewed
Probab=85.10 E-value=5.7 Score=30.41 Aligned_cols=57 Identities=16% Similarity=0.096 Sum_probs=34.6
Q ss_pred chhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCCcch
Q psy1755 32 EGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPPDLR 89 (103)
Q Consensus 32 e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~~~k 89 (103)
.+...|.....+++...+-+.+.+.+.+. +..+..+......+++.++.++.+++.+
T Consensus 139 ~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 195 (420)
T PRK09528 139 SGFEYGRARMWGSLGWALCAFIAGILFNI-NPQINFWLGSGSALILLVLLFFAKPDAP 195 (420)
T ss_pred ccccchhhHHhhhHHHHHHHHHHHHHHhc-CchHhHHHHHHHHHHHHHHHhccccccc
Confidence 34455777788888888888888777653 3223334444444555566666655443
No 147
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=84.74 E-value=9.7 Score=29.63 Aligned_cols=82 Identities=12% Similarity=-0.049 Sum_probs=45.3
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHh-hhcccchhHHHHHHHHHHHH-HHHHHhh
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQ-LFTAFGDIVANIALCLALVL-GTLLTLI 83 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~-l~~~~~~~~~~~~~~~~~~~-~~il~~f 83 (103)
.+.|++.+...|..--..+|...|..-+...|+.+..+++++.+...+... +....+-.+..++.+...++ ..+.+++
T Consensus 128 ~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~ 207 (452)
T PRK11273 128 FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAM 207 (452)
T ss_pred HHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888777888777777885433334778888888888876554443322 11112222333333333333 3444555
Q ss_pred cCCc
Q psy1755 84 IPPD 87 (103)
Q Consensus 84 ~k~~ 87 (103)
.|++
T Consensus 208 ~~~~ 211 (452)
T PRK11273 208 MRDT 211 (452)
T ss_pred ccCC
Confidence 6653
No 148
>PRK09848 glucuronide transporter; Provisional
Probab=84.35 E-value=13 Score=28.69 Aligned_cols=84 Identities=13% Similarity=0.065 Sum_probs=47.5
Q ss_pred HHHHhhhchhHHHHHHHHhhcCC-------CCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc--------hh---HHH-
Q psy1755 7 GRSFFMTGYLPVGFELAAELTYP-------EPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG--------DI---VAN- 67 (103)
Q Consensus 7 l~G~f~~~~~Pi~lEla~E~tyP-------v~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~--------~~---~~~- 67 (103)
+.|+..+...|...-+..+..-+ ..|+...|+.+...++.+.+-..+.+.+.+..| +. ...
T Consensus 328 l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~~~~~~~~~~~~~i~~ 407 (448)
T PRK09848 328 IASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYIANQVQTPEVIMGIRT 407 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCCHHHHHHHHH
Confidence 44555555566666666664322 235888899888888888777776666543211 11 111
Q ss_pred ---HHHHHHHHHHHHHHhhcCCcchh
Q psy1755 68 ---IALCLALVLGTLLTLIIPPDLRR 90 (103)
Q Consensus 68 ---~~~~~~~~~~~il~~f~k~~~kR 90 (103)
+..+.+.+++.++..++|-+-+|
T Consensus 408 ~~~~~p~~~~~~~~~~~~~y~l~~~~ 433 (448)
T PRK09848 408 SIALVPCGFMLLAFVIIWFYPLTDKK 433 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHeeCCHHH
Confidence 22234556666666677665443
No 149
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=84.27 E-value=0.91 Score=36.54 Aligned_cols=62 Identities=18% Similarity=0.306 Sum_probs=43.7
Q ss_pred cCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchh-HHHHHHHHHHHHHHHHHhhcCCcchhh
Q psy1755 27 TYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDI-VANIALCLALVLGTLLTLIIPPDLRRQ 91 (103)
Q Consensus 27 tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~il~~f~k~~~kR~ 91 (103)
-||..-+..+|+.-+.|+++|+.++..++...+..|+. ...+++..+.+++..+ .+..|+|+
T Consensus 342 if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~---~~~~y~r~ 404 (417)
T COG2223 342 IFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVL---TWALYARR 404 (417)
T ss_pred HHHhhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHhc
Confidence 45667789999999999999999999999988887743 3444444454555444 34444444
No 150
>KOG0255|consensus
Probab=84.20 E-value=11 Score=29.92 Aligned_cols=78 Identities=23% Similarity=0.191 Sum_probs=52.9
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI 83 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f 83 (103)
.=.+.|++..+.+.++.-+..|..-|..-+....+ ..+.-..|.+.+.....+.+ +=.|..|......++.++++++
T Consensus 177 ~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l 253 (521)
T KOG0255|consen 177 FRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFL 253 (521)
T ss_pred HHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHc
Confidence 33678999999999999999999988777777777 66666666666666666665 2223444444444444444444
Q ss_pred c
Q psy1755 84 I 84 (103)
Q Consensus 84 ~ 84 (103)
.
T Consensus 254 ~ 254 (521)
T KOG0255|consen 254 P 254 (521)
T ss_pred c
Confidence 4
No 151
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=84.13 E-value=12 Score=29.54 Aligned_cols=48 Identities=10% Similarity=0.099 Sum_probs=30.4
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCC-chhHHHHHHHHhhhhHHHHHHHHH
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEP-EGTSSGLLNASAQVFGILFTVVYG 55 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~-e~~ssgll~~~~qi~g~i~~~i~~ 55 (103)
.+.|++.+...| ......| .||.. -+...|+.+..+++++.+-..+..
T Consensus 132 ~l~G~~~~~~~~-~~~~i~~-~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~ 180 (476)
T PLN00028 132 FFIGFSLATFVS-CQYWMST-MFNGKIVGTANGIAAGWGNLGGGVTQLLMP 180 (476)
T ss_pred HHHHHHHHhhHH-HHHHHHH-hcChhheeHHHHHHHHHHHHHHHHHHHHHH
Confidence 456776665544 3446677 45544 488889988777777665544443
No 152
>KOG2532|consensus
Probab=84.11 E-value=2.3 Score=34.32 Aligned_cols=79 Identities=16% Similarity=0.083 Sum_probs=58.1
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcc-cchhHHHHHHHHHHHHHHHHHhhc
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTA-FGDIVANIALCLALVLGTLLTLII 84 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~-~~~~~~~~~~~~~~~~~~il~~f~ 84 (103)
.+.|+..+..+|..-.+.++=..|-.-+.-.+++..+.|++.++-..+.+.+-+. .|=.+.-.+.+++.++-.++|+++
T Consensus 136 ~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~ 215 (466)
T KOG2532|consen 136 FLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLF 215 (466)
T ss_pred HHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888888866665558889999999999999988899988877 454444444555555555555544
No 153
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=84.10 E-value=8.9 Score=29.15 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=21.8
Q ss_pred HHHHHhhcCCCCc-hhHHHHHHHHhhhhHHHHHHHHHhhh
Q psy1755 20 FELAAELTYPEPE-GTSSGLLNASAQVFGILFTVVYGQLF 58 (103)
Q Consensus 20 lEla~E~tyPv~e-~~ssgll~~~~qi~g~i~~~i~~~l~ 58 (103)
.-+..|++.+-+| +...++-...+++.+.+...+...+.
T Consensus 121 ~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~ 160 (437)
T TIGR00792 121 WSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLV 160 (437)
T ss_pred hhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456787765454 44556666666666655544444443
No 154
>PRK03612 spermidine synthase; Provisional
Probab=83.78 E-value=10 Score=31.09 Aligned_cols=59 Identities=10% Similarity=0.096 Sum_probs=38.4
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhh-hcccch
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQL-FTAFGD 63 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l-~~~~~~ 63 (103)
.+.+.|++++..+|+...+..+.. ....+.+.|-+...+.+++++=.++.+.+ .+..|.
T Consensus 116 ~~~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~ 175 (521)
T PRK03612 116 LVLLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGL 175 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcch
Confidence 345678999999999998887622 21235566777777777666665555543 344554
No 155
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=83.50 E-value=3.7 Score=30.50 Aligned_cols=59 Identities=14% Similarity=0.136 Sum_probs=41.7
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCC-CchhHHHHHHHHhhhhHHHHHHHHHhhhcccch
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPE-PEGTSSGLLNASAQVFGILFTVVYGQLFTAFGD 63 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv-~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~ 63 (103)
+.+.|+..+..+|...........|. ..+...|+.+..+++.+++-+.+.+++.|+.|+
T Consensus 292 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~ 351 (355)
T TIGR00896 292 ALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN 351 (355)
T ss_pred HHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45678888888888777665433332 225667888888888888888888888877654
No 156
>PRK03633 putative MFS family transporter protein; Provisional
Probab=83.22 E-value=12 Score=28.25 Aligned_cols=56 Identities=7% Similarity=-0.211 Sum_probs=40.1
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcc
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTA 60 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~ 60 (103)
-.+.|+..+...|...-...+...|...+...|......++...+-+.+.+.+.+.
T Consensus 101 ~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 156 (381)
T PRK03633 101 RFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE 156 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 35667777777787666666665565567788888888888888777777766544
No 157
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=83.06 E-value=11 Score=29.23 Aligned_cols=52 Identities=12% Similarity=-0.136 Sum_probs=34.0
Q ss_pred HHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhh
Q psy1755 7 GRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLF 58 (103)
Q Consensus 7 l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~ 58 (103)
+.|+..+...+...-+..|+..|...+...++.....++++.+-+.+...+.
T Consensus 103 l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 103 ILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred HHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555556666665555677788888888888777777766554
No 158
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=82.96 E-value=21 Score=28.77 Aligned_cols=60 Identities=17% Similarity=0.045 Sum_probs=47.2
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchh
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDI 64 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~ 64 (103)
-.+.|+.....-..++-++++.+-|..-+...+++|..--++-++=-.+.+.+.+++...
T Consensus 96 F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~ 155 (403)
T PF03209_consen 96 FLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPE 155 (403)
T ss_pred HHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence 356788888888899999999999998899999998876655555556677778777653
No 159
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=82.90 E-value=17 Score=26.95 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=20.8
Q ss_pred hhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHH
Q psy1755 15 YLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVY 54 (103)
Q Consensus 15 ~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~ 54 (103)
..+..+....| .+|...+...++.+......|.+...+.
T Consensus 304 ~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 304 ISSNAMAVILD-EFPHMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred hhHHHHHHHhc-cccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556 4675556666766655554444433333
No 160
>TIGR00895 2A0115 benzoate transport.
Probab=82.53 E-value=3.1 Score=30.63 Aligned_cols=54 Identities=22% Similarity=0.218 Sum_probs=38.1
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhh
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQL 57 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l 57 (103)
...+.|++.+...|...-+..|..-|...+...|+....+++.+.+-+.+.+++
T Consensus 344 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 344 LGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 345677777778888888888865444447777888888887777776666543
No 161
>PRK09669 putative symporter YagG; Provisional
Probab=82.53 E-value=21 Score=27.68 Aligned_cols=56 Identities=11% Similarity=0.024 Sum_probs=36.1
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhc-------CCCCchhHHHHHHHHhhhhHHHHHHHHHhhhc
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELT-------YPEPEGTSSGLLNASAQVFGILFTVVYGQLFT 59 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~t-------yPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~ 59 (103)
.+.+.|+..+...|+..-+..|+. =.-.|+...|..+.+.++...+-..+.+++.+
T Consensus 325 ~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~ 387 (444)
T PRK09669 325 LNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA 387 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777787777777643 12346666777777777776666666665543
No 162
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=82.15 E-value=18 Score=27.33 Aligned_cols=74 Identities=11% Similarity=0.035 Sum_probs=48.6
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHH-HHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHH
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLN-ASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLL 80 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~-~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il 80 (103)
..+-|+..+...|..+.+..+. .|...++..++.+ ...++.+.+...+.+++.|+.|. ...+.+....+++.++
T Consensus 300 q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 300 QILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 4566777777888888888875 3333355567765 45667888888899999988874 3444444444444433
No 163
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=80.18 E-value=23 Score=26.64 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=13.2
Q ss_pred CCchhHHHHHHHHhhhhHHHHHHHHH
Q psy1755 30 EPEGTSSGLLNASAQVFGILFTVVYG 55 (103)
Q Consensus 30 v~e~~ssgll~~~~qi~g~i~~~i~~ 55 (103)
..++..+++..+...+.+.+...+.+
T Consensus 323 ~~~g~~~~~~~~~~~~g~~~~~~l~~ 348 (392)
T PRK10473 323 LRAGVASSTLGIAQVCGSSLWIWLAA 348 (392)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666554444444544444444
No 164
>KOG3764|consensus
Probab=80.18 E-value=3.4 Score=33.66 Aligned_cols=85 Identities=16% Similarity=0.176 Sum_probs=56.0
Q ss_pred HHHHhhhchhHHHHHHHHhhcCCCCc--hhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhc
Q psy1755 7 GRSFFMTGYLPVGFELAAELTYPEPE--GTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLII 84 (103)
Q Consensus 7 l~G~f~~~~~Pi~lEla~E~tyPv~e--~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~ 84 (103)
+-|+-.......++-+.+. .||.++ +.+-|.+..+..++.++=+..-+.+-+..|....-.++...+++...+-+++
T Consensus 168 LQgvgsA~~~tsglamlAd-~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~v 246 (464)
T KOG3764|consen 168 LQGVGSAFADTSGLAMLAD-VFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLV 246 (464)
T ss_pred HhhhhHHHHHhhhHHHHHH-HcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhe
Confidence 4455566667778888888 888888 6777777777666655555555555555566556666666677777776666
Q ss_pred CCcchhhh
Q psy1755 85 PPDLRRQA 92 (103)
Q Consensus 85 k~~~kR~~ 92 (103)
-+.+|+.+
T Consensus 247 i~p~~~~~ 254 (464)
T KOG3764|consen 247 IEPTEMDP 254 (464)
T ss_pred eCccccCc
Confidence 55544444
No 165
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=80.00 E-value=19 Score=28.73 Aligned_cols=80 Identities=20% Similarity=0.185 Sum_probs=50.8
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH-HHhhc
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTL-LTLII 84 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~i-l~~f~ 84 (103)
.+.|+.-+.+.++....+.++..|...+...+++.....+--.+=.-+-.++-+..|=.+.-+....+..++.+ ++..+
T Consensus 109 ~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~l 188 (394)
T COG2814 109 ALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLL 188 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45788889999999999999999999999999887765544333333333333333433444444444444444 34445
Q ss_pred C
Q psy1755 85 P 85 (103)
Q Consensus 85 k 85 (103)
+
T Consensus 189 P 189 (394)
T COG2814 189 P 189 (394)
T ss_pred C
Confidence 5
No 166
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=79.50 E-value=15 Score=27.71 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=37.0
Q ss_pred hHHHHHHHHhhcCCCCchhHHHH-HHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHH
Q psy1755 16 LPVGFELAAELTYPEPEGTSSGL-LNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLG 77 (103)
Q Consensus 16 ~Pi~lEla~E~tyPv~e~~ssgl-l~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 77 (103)
.....+...|..-+..+++..+. .+...++.+++...+.+++.|..|-.........+.++.
T Consensus 325 ~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~ 387 (396)
T TIGR00882 325 LVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLF 387 (396)
T ss_pred HHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 33455666664334444443444 567788888888899999988777544444444433333
No 167
>KOG2563|consensus
Probab=77.89 E-value=12 Score=30.82 Aligned_cols=59 Identities=19% Similarity=0.086 Sum_probs=49.3
Q ss_pred HHHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccch
Q psy1755 3 LLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGD 63 (103)
Q Consensus 3 v~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~ 63 (103)
.++...|+.++-..+..++.+.+++++.+ ..+|.+....++.|.+-..+.+.+.|+...
T Consensus 272 ~~~ygi~~g~F~~l~~~l~~~l~~sgY~~--~~aG~ig~l~iv~Gmlga~~~gii~Dktk~ 330 (480)
T KOG2563|consen 272 AICYGIGLGLFNSLSTLLNLALCPSGYEG--VFAGYIGALMIVAGMLGALASGIIADKTKK 330 (480)
T ss_pred HHHHhhhHHHHHHHHHHhhhccccccCCc--cccchhHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 45667788888899999999999998876 788888888888888888888888887654
No 168
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=77.87 E-value=0.14 Score=39.46 Aligned_cols=82 Identities=17% Similarity=0.342 Sum_probs=54.1
Q ss_pred hhchhHHHHHHHHhhcCCCC-chhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH-HHHhhcCCcch
Q psy1755 12 MTGYLPVGFELAAELTYPEP-EGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGT-LLTLIIPPDLR 89 (103)
Q Consensus 12 ~~~~~Pi~lEla~E~tyPv~-e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-il~~f~k~~~k 89 (103)
..+..|+..-+..| .||-. -++..|+....+++++++...+...+.+..+.....+...+++.++. +..++.+|..+
T Consensus 363 ~~g~~~~~~~~~~E-lfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g 441 (451)
T PF00083_consen 363 SLGWGPLPWIYTAE-LFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKG 441 (451)
T ss_pred cccccccccccccc-cccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCC
Confidence 33566777788899 55544 48889999999999998887777666666553334444444444444 45566677655
Q ss_pred hhhhh
Q psy1755 90 RQAAH 94 (103)
Q Consensus 90 R~~~e 94 (103)
|.-.|
T Consensus 442 ~~l~e 446 (451)
T PF00083_consen 442 KTLEE 446 (451)
T ss_pred CCHHH
Confidence 54444
No 169
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=77.25 E-value=25 Score=28.52 Aligned_cols=47 Identities=9% Similarity=0.126 Sum_probs=34.1
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCC-chhHHHHHHHHhhhhHHHHHH
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEP-EGTSSGLLNASAQVFGILFTV 52 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~-e~~ssgll~~~~qi~g~i~~~ 52 (103)
...+.|+. ++.+|.+.....+ -||.. .+...|+....++++..+...
T Consensus 134 ~r~l~Gig-g~~f~~~~~~vs~-wfp~~~rG~A~Gi~~g~G~~G~~l~~~ 181 (462)
T PRK15034 134 IALLCGFA-GANFASSMGNISF-FFPKAKQGSALGINGGLGNLGVSVMQL 181 (462)
T ss_pred HHHHHHHH-HHhHHHHHHHHHH-HCCHhHhHHHHHHHHHHHhhHHHHHHH
Confidence 34567775 7788999999888 46655 689999997777777654333
No 170
>PRK10429 melibiose:sodium symporter; Provisional
Probab=76.37 E-value=26 Score=27.56 Aligned_cols=37 Identities=16% Similarity=0.024 Sum_probs=23.7
Q ss_pred HHHHHHhhcCCCCchhH-HHHHHHHhhhhHHHHHHHHH
Q psy1755 19 GFELAAELTYPEPEGTS-SGLLNASAQVFGILFTVVYG 55 (103)
Q Consensus 19 ~lEla~E~tyPv~e~~s-sgll~~~~qi~g~i~~~i~~ 55 (103)
..-+..|+|-.-.|-+. ++.-...+++.+.+...+..
T Consensus 127 ~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~ 164 (473)
T PRK10429 127 FWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTL 164 (473)
T ss_pred HHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888865455444 67767778877776654443
No 171
>KOG2504|consensus
Probab=76.05 E-value=4.3 Score=33.16 Aligned_cols=59 Identities=12% Similarity=0.158 Sum_probs=51.3
Q ss_pred CCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCC
Q psy1755 28 YPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPP 86 (103)
Q Consensus 28 yPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~ 86 (103)
|+-.-+.++|+.+....++.++|+.+.+.+.+++|..++.+.+....+-+++.-+.+|+
T Consensus 164 F~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 164 FEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred hHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45566899999999999999999999999999999888888888777777777777877
No 172
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=75.56 E-value=4 Score=33.06 Aligned_cols=49 Identities=18% Similarity=0.275 Sum_probs=37.5
Q ss_pred chhHHHHHHHHhhhhHHHHHHHHHhhhcccchh-HHHHHHHHHHHHHHHH
Q psy1755 32 EGTSSGLLNASAQVFGILFTVVYGQLFTAFGDI-VANIALCLALVLGTLL 80 (103)
Q Consensus 32 e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~il 80 (103)
-+..+|+..+.|.++|++.+.++++..+..|.. ...+.+.+..+++..+
T Consensus 400 ~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 449 (462)
T PRK15034 400 TAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLL 449 (462)
T ss_pred HHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999888766653 4555555666666554
No 173
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=74.87 E-value=23 Score=30.74 Aligned_cols=53 Identities=15% Similarity=-0.104 Sum_probs=38.5
Q ss_pred HHHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHH
Q psy1755 3 LLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYG 55 (103)
Q Consensus 3 v~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~ 55 (103)
+...+.|++.+...+...-+..|.+.+...+...|+.+...++++++...+..
T Consensus 327 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~ 379 (1146)
T PRK08633 327 VLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTT 379 (1146)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777788777766788899988888877765554443
No 174
>KOG2325|consensus
Probab=74.85 E-value=11 Score=31.06 Aligned_cols=61 Identities=11% Similarity=0.199 Sum_probs=35.7
Q ss_pred CchhHHHHHHHHhhhhHHHHHHHHHhhhcccch--------------hHHHHHHHHHHHHHHH-HHhhcCCcchhh
Q psy1755 31 PEGTSSGLLNASAQVFGILFTVVYGQLFTAFGD--------------IVANIALCLALVLGTL-LTLIIPPDLRRQ 91 (103)
Q Consensus 31 ~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~--------------~~~~~~~~~~~~~~~i-l~~f~k~~~kR~ 91 (103)
++...+-.....|++.|.++....|......++ ....|++.....+.++ +.+++||++|+.
T Consensus 161 ~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~ 236 (488)
T KOG2325|consen 161 EDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGI 236 (488)
T ss_pred cchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCc
Confidence 333344444455667777776666665543321 2466777776666654 566778877664
No 175
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=73.41 E-value=8.5 Score=31.37 Aligned_cols=84 Identities=18% Similarity=0.116 Sum_probs=59.6
Q ss_pred hHHHHHHHHhhhchhHHHHHHHHhhcCCCCc-hhHHHHHHHHhhhhHHHHHHHH--HhhhcccchhHHHHHHHH-HHHHH
Q psy1755 2 SLLGSGRSFFMTGYLPVGFELAAELTYPEPE-GTSSGLLNASAQVFGILFTVVY--GQLFTAFGDIVANIALCL-ALVLG 77 (103)
Q Consensus 2 av~~~l~G~f~~~~~Pi~lEla~E~tyPv~e-~~ssgll~~~~qi~g~i~~~i~--~~l~~~~~~~~~~~~~~~-~~~~~ 77 (103)
+++-.+.|+|.+.=-|-....-+. =||.+| ++--++-+.+-|++|.+.+.+. .++.++.+-....++-.. .++++
T Consensus 121 ~~l~~lng~fQg~Gwpp~~~~i~~-Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiiva 199 (448)
T COG2271 121 AVLWVLNGWFQGMGWPPCARTITH-WFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVA 199 (448)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHH-HcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 445566777777777777777777 678888 8888999999999999999888 666666544445555543 44556
Q ss_pred HHHHhhcCC
Q psy1755 78 TLLTLIIPP 86 (103)
Q Consensus 78 ~il~~f~k~ 86 (103)
++++...|.
T Consensus 200 l~~~~~~rd 208 (448)
T COG2271 200 LILLFLLRD 208 (448)
T ss_pred HHHHHHhCC
Confidence 666666554
No 176
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=73.36 E-value=29 Score=26.17 Aligned_cols=77 Identities=13% Similarity=0.021 Sum_probs=38.3
Q ss_pred HHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCCc
Q psy1755 8 RSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPPD 87 (103)
Q Consensus 8 ~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~~ 87 (103)
.|+......|..-.+..+.+- +++..-|.....++++.++-+.+.+.+.+ .+..+.-+....+..+..+++++.+++
T Consensus 109 ~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~ 185 (396)
T TIGR00882 109 LGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPK 185 (396)
T ss_pred HHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344455556665555555331 22333466667777777777766665543 333222222333334444444454444
No 177
>KOG3762|consensus
Probab=71.75 E-value=26 Score=29.67 Aligned_cols=91 Identities=16% Similarity=0.125 Sum_probs=61.9
Q ss_pred HHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHH-HHHhhhcccchhHHHHHHHHHHHHHHHHHhhcC
Q psy1755 7 GRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTV-VYGQLFTAFGDIVANIALCLALVLGTLLTLIIP 85 (103)
Q Consensus 7 l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~-i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k 85 (103)
+-|+....+.-...-++.-.+.|.-+.+..|++...-.-.|--+.. +-+.+..+.+...+.+..+..+++.+++.+.++
T Consensus 468 lqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq 547 (618)
T KOG3762|consen 468 LQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQ 547 (618)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555566667778888999999999999987655433332222 334455667776777777777777788888887
Q ss_pred CcchhhhhhhcC
Q psy1755 86 PDLRRQAAHSDF 97 (103)
Q Consensus 86 ~~~kR~~~e~~~ 97 (103)
...||+...++.
T Consensus 548 ~~l~~~~~i~~~ 559 (618)
T KOG3762|consen 548 LLLKRRGFIKEQ 559 (618)
T ss_pred hhhccccccCcc
Confidence 777776655543
No 178
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=69.97 E-value=8.6 Score=27.77 Aligned_cols=47 Identities=32% Similarity=0.299 Sum_probs=38.6
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHH
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILF 50 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~ 50 (103)
...+.|++.+...|....+..|...|...++..|+.+...++.+.+-
T Consensus 305 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ig 351 (352)
T PF07690_consen 305 ALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIG 351 (352)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 45668888888899999999997766777889999999888887753
No 179
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=69.51 E-value=29 Score=27.43 Aligned_cols=77 Identities=19% Similarity=0.267 Sum_probs=37.6
Q ss_pred hhhchhHHHHH-HHHhhcCCCCch--hHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCCc
Q psy1755 11 FMTGYLPVGFE-LAAELTYPEPEG--TSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPPD 87 (103)
Q Consensus 11 f~~~~~Pi~lE-la~E~tyPv~e~--~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~~ 87 (103)
+...+.=+.-| +-+|.....+++ ..-+..+..-.+++++--.+.+.+.++.+..+.-.....+..+..+..++.+++
T Consensus 98 ~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 98 FGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 33333334444 556777666665 223344445555555555555666665554333333333444444455555554
No 180
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=69.35 E-value=11 Score=29.52 Aligned_cols=54 Identities=19% Similarity=0.038 Sum_probs=39.2
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhc
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFT 59 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~ 59 (103)
.+.|++.+...|...-+..|...|...+...|+....+++++++-..+..++.+
T Consensus 130 ~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~ 183 (467)
T PRK09556 130 ALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGAN 183 (467)
T ss_pred HHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHH
Confidence 456887788889888889995444445888899888888887776666544443
No 181
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=68.82 E-value=11 Score=29.10 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=30.3
Q ss_pred cCCCC-chhHHHHHHHHhhhhHHHHHHHHHhhhcccch
Q psy1755 27 TYPEP-EGTSSGLLNASAQVFGILFTVVYGQLFTAFGD 63 (103)
Q Consensus 27 tyPv~-e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~ 63 (103)
.+|-. -++..|+.+..+++.+++.+.+.+.+.+..|.
T Consensus 361 ~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~ 398 (412)
T TIGR02332 361 SISLQARAIAIAVINATGNIGSALSPFLIGILKDATGS 398 (412)
T ss_pred ccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCC
Confidence 45543 37789999999999999999999988887764
No 182
>PRK15075 citrate-proton symporter; Provisional
Probab=68.43 E-value=52 Score=25.33 Aligned_cols=44 Identities=23% Similarity=0.073 Sum_probs=31.7
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHH
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGIL 49 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i 49 (103)
.+.|+..+...|...-+..|...|..-+...++.....|+...+
T Consensus 125 ~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~ 168 (434)
T PRK15075 125 LLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVF 168 (434)
T ss_pred HHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHH
Confidence 45677777778888889999766666688888877766655433
No 183
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=68.26 E-value=50 Score=25.05 Aligned_cols=85 Identities=13% Similarity=0.060 Sum_probs=57.0
Q ss_pred HHHHhhhchhHHHHHHHHhhcCCCC--chhHHH--HHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHh
Q psy1755 7 GRSFFMTGYLPVGFELAAELTYPEP--EGTSSG--LLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTL 82 (103)
Q Consensus 7 l~G~f~~~~~Pi~lEla~E~tyPv~--e~~ssg--ll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~ 82 (103)
+.++-.+++=|-.--+..+ -|+.. +...++ +..+..|+++++-..+..++.+++|-.+.-....++.+++.+..+
T Consensus 42 lia~G~G~~K~ni~~~~~d-q~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 42 LIAVGTGGIKPNISPFGAD-QYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHCCHHHHHHHHHH-CSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccccccHHHHHHH-HhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHH
Confidence 4555566677777778888 56544 333333 467788888888778888888777766666666677778888777
Q ss_pred hcCCcchhhh
Q psy1755 83 IIPPDLRRQA 92 (103)
Q Consensus 83 f~k~~~kR~~ 92 (103)
.-|++|++..
T Consensus 121 ~~~~~y~~~~ 130 (372)
T PF00854_consen 121 SGRKRYRKVA 130 (372)
T ss_dssp CCCCTT--S-
T ss_pred hCCcCCcCcC
Confidence 7788887763
No 184
>KOG2532|consensus
Probab=66.46 E-value=20 Score=28.97 Aligned_cols=82 Identities=17% Similarity=0.248 Sum_probs=49.8
Q ss_pred HHHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhccc-chhHHHHHHH--HHHHHHHH
Q psy1755 3 LLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAF-GDIVANIALC--LALVLGTL 79 (103)
Q Consensus 3 v~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~-~~~~~~~~~~--~~~~~~~i 79 (103)
+.+...+....+..-.|+....=..=|.--++..|+.+..+++.+++-+.+.+.+..+. -+.|...++. +..+++.+
T Consensus 362 ~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i 441 (466)
T KOG2532|consen 362 VILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNI 441 (466)
T ss_pred HHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhch
Confidence 33444444444444445444443223555688889999999999999999999887522 2347777664 34455544
Q ss_pred HHhhc
Q psy1755 80 LTLII 84 (103)
Q Consensus 80 l~~f~ 84 (103)
...++
T Consensus 442 ~f~~f 446 (466)
T KOG2532|consen 442 IFLFF 446 (466)
T ss_pred heeEe
Confidence 44443
No 185
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=66.33 E-value=66 Score=26.38 Aligned_cols=79 Identities=16% Similarity=-0.062 Sum_probs=41.6
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhc
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLII 84 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~ 84 (103)
.+.|++.........-..-+.+.+.--+...++..+..+....+-..+.+.+.+..|........+++++++.++....
T Consensus 315 ~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~ 393 (524)
T PF05977_consen 315 FLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRF 393 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445554444444333444444444446666666666655555555667777777776554443334444444444333
No 186
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=65.51 E-value=8.1 Score=29.79 Aligned_cols=13 Identities=15% Similarity=0.327 Sum_probs=8.0
Q ss_pred cchh-hhhhhcCCC
Q psy1755 87 DLRR-QAAHSDFNI 99 (103)
Q Consensus 87 ~~kR-~~~e~~~~~ 99 (103)
+||| .+..++.+|
T Consensus 280 RYRRKKKmkKKlQY 293 (299)
T PF02009_consen 280 RYRRKKKMKKKLQY 293 (299)
T ss_pred HHHHHhhhhHHHHH
Confidence 4888 666655543
No 187
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=64.94 E-value=74 Score=25.76 Aligned_cols=57 Identities=25% Similarity=0.225 Sum_probs=35.1
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHhhhcccc-h------hHHHHHHHHH--HHHHHHHHhhcCCcch
Q psy1755 33 GTSSGLLNASAQVFGILFTVVYGQLFTAFG-D------IVANIALCLA--LVLGTLLTLIIPPDLR 89 (103)
Q Consensus 33 ~~ssgll~~~~qi~g~i~~~i~~~l~~~~~-~------~~~~~~~~~~--~~~~~il~~f~k~~~k 89 (103)
+..+|.=+..|.++|++...+.-.+....+ + ......++++ .+.+.+..+++|++.+
T Consensus 187 ~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 187 GRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPG 252 (477)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 899999999999999988777554432221 1 1111222332 3555666777777655
No 188
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=64.29 E-value=40 Score=27.07 Aligned_cols=50 Identities=16% Similarity=0.172 Sum_probs=34.3
Q ss_pred HHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCCcchh
Q psy1755 41 ASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPPDLRR 90 (103)
Q Consensus 41 ~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~~~kR 90 (103)
...|+..+++..+.|.+.|+.|-..+.++++...+...++..|.-++-|+
T Consensus 356 ~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 356 FAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 56788889999999999999886666677776665555555555443344
No 189
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=63.93 E-value=70 Score=26.62 Aligned_cols=79 Identities=15% Similarity=0.091 Sum_probs=56.3
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCc-hhHHHHHHHHhhhhHHHHHHHHHhhhcccchh---HHHHHHHHHHHHHHHHH
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPE-GTSSGLLNASAQVFGILFTVVYGQLFTAFGDI---VANIALCLALVLGTLLT 81 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e-~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~---~~~~~~~~~~~~~~il~ 81 (103)
.++|++-++.+ ...-+... -+|..| +..+|+...+.+++.++-..+.++ ....|-. ..|.+-.+...+++++.
T Consensus 123 ~llGvaEA~~~-A~~syI~~-WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a 199 (511)
T TIGR00806 123 VFYSVTMAARI-AYSSYIFS-LVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLA 199 (511)
T ss_pred HHHHHHHHHHH-HHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHH
Confidence 56788888877 66666666 456666 888999988888888888888877 4444432 35666667777777777
Q ss_pred hhcCCc
Q psy1755 82 LIIPPD 87 (103)
Q Consensus 82 ~f~k~~ 87 (103)
+|++..
T Consensus 200 ~~LP~~ 205 (511)
T TIGR00806 200 LFLKRP 205 (511)
T ss_pred HhCCCC
Confidence 777643
No 190
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=63.15 E-value=23 Score=27.19 Aligned_cols=55 Identities=22% Similarity=0.099 Sum_probs=40.5
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcc
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTA 60 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~ 60 (103)
.+.|+..+...+...-.+.|..-|...+..+|+.+...++++.+-+.+.+.+.++
T Consensus 356 ~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 356 FIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567666666666666667755455668889999999999988888888877654
No 191
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=60.46 E-value=92 Score=25.35 Aligned_cols=86 Identities=23% Similarity=0.247 Sum_probs=57.6
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCC--CCchhHHHHHHHHhhhhHHHHHHHHHhhhcccch--hHHHHHHHHHHHHHHH
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYP--EPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGD--IVANIALCLALVLGTL 79 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyP--v~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~--~~~~~~~~~~~~~~~i 79 (103)
.+.++|+.-..++.+=+.+.+|..-+ ...+.-.|+++.+-.+-.++-....+.+.+-.|. .+...+-.++.+++.+
T Consensus 386 ~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~ 465 (477)
T TIGR01301 386 VFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGL 465 (477)
T ss_pred HHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHH
Confidence 34567888888888888888886653 4459999999999887777776666664444443 2333333456677777
Q ss_pred HHhhcCCcch
Q psy1755 80 LTLIIPPDLR 89 (103)
Q Consensus 80 l~~f~k~~~k 89 (103)
+..+.-++.+
T Consensus 466 ~~~~~~~~~~ 475 (477)
T TIGR01301 466 LALILLPRPR 475 (477)
T ss_pred HHHHhCCCCC
Confidence 7666655543
No 192
>PTZ00207 hypothetical protein; Provisional
Probab=60.17 E-value=76 Score=26.67 Aligned_cols=85 Identities=9% Similarity=0.037 Sum_probs=55.2
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHH-HHHHHhhhcccc----h---------hHHHHH
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILF-TVVYGQLFTAFG----D---------IVANIA 69 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~-~~i~~~l~~~~~----~---------~~~~~~ 69 (103)
-..+.|++.+...++..-...| -|-.+-++-=.++...+=+.+.+| ..+.+.+-|+.. + .-+.++
T Consensus 458 ~~~lvg~~~G~~~~~~~~i~se-lFgk~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v 536 (591)
T PTZ00207 458 PYFIAAFANGFMAATIALVTRT-IFAKDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAF 536 (591)
T ss_pred HHHHHHHHhhHhHHHHHHHHHH-HhccchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHH
Confidence 3467888888888888888888 455566777777777777777777 566666554432 1 134455
Q ss_pred HHHHHHHHHHHHhhcCCcch
Q psy1755 70 LCLALVLGTLLTLIIPPDLR 89 (103)
Q Consensus 70 ~~~~~~~~~il~~f~k~~~k 89 (103)
+.+.+++++++...+.-|||
T Consensus 537 ~~~~~~~g~~~s~~l~~R~r 556 (591)
T PTZ00207 537 LLGLSFLAFITSTYVHLQYR 556 (591)
T ss_pred HHHHHHHHHHHHhheeeehH
Confidence 55666666666555444443
No 193
>PRK11462 putative transporter; Provisional
Probab=58.61 E-value=86 Score=24.73 Aligned_cols=34 Identities=24% Similarity=0.172 Sum_probs=21.5
Q ss_pred HHHHhhcC-CCCchhHHHHHHHHhhhhHHHHHHHH
Q psy1755 21 ELAAELTY-PEPEGTSSGLLNASAQVFGILFTVVY 54 (103)
Q Consensus 21 Ela~E~ty-Pv~e~~ssgll~~~~qi~g~i~~~i~ 54 (103)
-++.|+|. |...+.-++.-..++++++++...+.
T Consensus 132 al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~ 166 (460)
T PRK11462 132 ALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLM 166 (460)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677776 33335667777777777666554443
No 194
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=56.30 E-value=33 Score=25.81 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=39.4
Q ss_pred CchhHHHHHHHHhhhhHHHHH----------------HHHHhhhcccc----------hhHHHHHHHHHHHHHHHHHhhc
Q psy1755 31 PEGTSSGLLNASAQVFGILFT----------------VVYGQLFTAFG----------DIVANIALCLALVLGTLLTLII 84 (103)
Q Consensus 31 ~e~~ssgll~~~~qi~g~i~~----------------~i~~~l~~~~~----------~~~~~~~~~~~~~~~~il~~f~ 84 (103)
+-+.-+|.+|..||+..+-.+ .+.+|...+.| ..+.|++-.++..++.++..|+
T Consensus 56 p~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fi 135 (254)
T PF07857_consen 56 PWAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFI 135 (254)
T ss_pred eHHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeee
Confidence 347788888888886543322 22334444432 2367777788889999999999
Q ss_pred CCcchh
Q psy1755 85 PPDLRR 90 (103)
Q Consensus 85 k~~~kR 90 (103)
|++-++
T Consensus 136 k~~~~~ 141 (254)
T PF07857_consen 136 KSEEKE 141 (254)
T ss_pred cCCCCC
Confidence 887743
No 195
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=56.17 E-value=36 Score=26.94 Aligned_cols=54 Identities=13% Similarity=0.074 Sum_probs=39.4
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhh
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLF 58 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~ 58 (103)
..+.|+..+...|...-.+.+..-|...+..+|+.+...++++.+-..+.+.+.
T Consensus 358 ~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~ 411 (495)
T PRK14995 358 MALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLL 411 (495)
T ss_pred HHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777666666788888888888888777776666553
No 196
>PF13347 MFS_2: MFS/sugar transport protein
Probab=56.17 E-value=46 Score=25.60 Aligned_cols=65 Identities=18% Similarity=0.108 Sum_probs=31.8
Q ss_pred HHHhhcCCCCc-hhHHHHHHHHhhhhHHHHHHHHHhhhcccch-------hHHHHHHHHHHHHHHH-HHhhcCC
Q psy1755 22 LAAELTYPEPE-GTSSGLLNASAQVFGILFTVVYGQLFTAFGD-------IVANIALCLALVLGTL-LTLIIPP 86 (103)
Q Consensus 22 la~E~tyPv~e-~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~-------~~~~~~~~~~~~~~~i-l~~f~k~ 86 (103)
+..|+|-.-.| ..-++.-..++++++++...+...+.+..|. .+..++.+....++.+ ..+..||
T Consensus 127 l~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 127 LIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred cCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 45666653233 5555666666666665555555544433321 2233333344444443 3445577
No 197
>KOG0255|consensus
Probab=56.07 E-value=1e+02 Score=24.42 Aligned_cols=82 Identities=27% Similarity=0.271 Sum_probs=47.6
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHH-HHHHHHHHHHhhc
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALC-LALVLGTLLTLII 84 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~-~~~~~~~il~~f~ 84 (103)
.+..++.+..+-+.+..++|+....--.+..|.....+.+.++.-+.+...... ........... ...+.+++..+++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~l 492 (521)
T KOG0255|consen 414 LLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLL 492 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcC
Confidence 334445555666669999997666666888888888888888777666543332 22222222223 3333344444666
Q ss_pred CCcc
Q psy1755 85 PPDL 88 (103)
Q Consensus 85 k~~~ 88 (103)
++..
T Consensus 493 pet~ 496 (521)
T KOG0255|consen 493 PETK 496 (521)
T ss_pred cccC
Confidence 5533
No 198
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=55.17 E-value=15 Score=26.93 Aligned_cols=32 Identities=16% Similarity=0.054 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCcchhhhhhh
Q psy1755 64 IVANIALCLALVLGTLLTLIIPPDLRRQAAHS 95 (103)
Q Consensus 64 ~~~~~~~~~~~~~~~il~~f~k~~~kR~~~e~ 95 (103)
.|+.|.+.++=++-+++..++-+++||++.-+
T Consensus 152 TwgT~~lmgvNvllFl~~~~~~EPwkRrRLv~ 183 (207)
T PF05546_consen 152 TWGTWGLMGVNVLLFLVAQLLVEPWKRRRLVK 183 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 47888888777777788888889999977543
No 199
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=53.84 E-value=28 Score=26.08 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=8.6
Q ss_pred hhHHHHHHHHhh
Q psy1755 15 YLPVGFELAAEL 26 (103)
Q Consensus 15 ~~Pi~lEla~E~ 26 (103)
..|..+++-..-
T Consensus 129 vlP~~~~Fl~~f 140 (258)
T PRK10921 129 VFPLAFGFLAKT 140 (258)
T ss_pred HHHHHHHHHHHc
Confidence 578888876653
No 200
>KOG4112|consensus
Probab=52.81 E-value=62 Score=21.06 Aligned_cols=51 Identities=24% Similarity=0.246 Sum_probs=26.2
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCCcchh
Q psy1755 34 TSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPPDLRR 90 (103)
Q Consensus 34 ~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~~~kR 90 (103)
...-++.+++.+.|+++.+..+.+. ++.....+.+++++++.+---+-|||
T Consensus 26 r~~q~ilti~aiVg~i~Gf~~Qqls------~tvy~vg~~~v~t~li~LPpwP~y~r 76 (101)
T KOG4112|consen 26 RFQQLILTIGAIVGFIYGFAQQQLS------VTVYIVGAGFVFTLLITLPPWPWYRR 76 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCchhhhc
Confidence 3445566666777777766654332 33333333444444444333445666
No 201
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=52.23 E-value=1.3e+02 Score=24.56 Aligned_cols=63 Identities=16% Similarity=0.216 Sum_probs=39.9
Q ss_pred ChHHHHHHHHhhhchhHHHHHHHHhhcCCCCchhHH--HHHHHHhhhhHHHHHHHHHhhhcccchh
Q psy1755 1 MSLLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSS--GLLNASAQVFGILFTVVYGQLFTAFGDI 64 (103)
Q Consensus 1 ~av~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ss--gll~~~~qi~g~i~~~i~~~l~~~~~~~ 64 (103)
||+.+.+.|+..+-..-.--+...| .||-+++.++ |-....-|+..+++....+.+.++.|-.
T Consensus 269 ia~~vi~y~~~~nlve~~~k~~v~~-~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~ 333 (472)
T TIGR00769 269 LALLVIAYGISINLVEVTWKSKLKA-QYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWL 333 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3566677888888777666667766 8897765532 3344444555555555556777777754
No 202
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=51.58 E-value=18 Score=23.84 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=13.0
Q ss_pred HHHHHHhhcCCcchhhhhhhc
Q psy1755 76 LGTLLTLIIPPDLRRQAAHSD 96 (103)
Q Consensus 76 ~~~il~~f~k~~~kR~~~e~~ 96 (103)
++++.++++|++.||++..++
T Consensus 14 ~~i~yF~~iRPQkKr~K~~~~ 34 (109)
T PRK05886 14 MGGFMYFASRRQRKAMQATID 34 (109)
T ss_pred HHHHHHHHccHHHHHHHHHHH
Confidence 334455567888777766554
No 203
>PRK09669 putative symporter YagG; Provisional
Probab=50.82 E-value=1.1e+02 Score=23.53 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=20.9
Q ss_pred HHHHHhhcCCCCchh-HHHHHHHHhhhhHHHHHHH
Q psy1755 20 FELAAELTYPEPEGT-SSGLLNASAQVFGILFTVV 53 (103)
Q Consensus 20 lEla~E~tyPv~e~~-ssgll~~~~qi~g~i~~~i 53 (103)
--+..|+|.+-.|-+ -++.-...+++++.+...+
T Consensus 131 ~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~ 165 (444)
T PRK09669 131 CAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVI 165 (444)
T ss_pred HHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889887655544 3466666666666555443
No 204
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=50.32 E-value=99 Score=22.69 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHH-HHHHhhcCCcchhhhhhhcCC
Q psy1755 66 ANIALCLALVLG-TLLTLIIPPDLRRQAAHSDFN 98 (103)
Q Consensus 66 ~~~~~~~~~~~~-~il~~f~k~~~kR~~~e~~~~ 98 (103)
.|..-....+.+ ++...-.+++|||.+.++++.
T Consensus 176 ~N~~gl~~~~fg~~V~~~~~~~~~kr~~~~~~~~ 209 (214)
T cd08764 176 GNFIGIVLVIFGGLVVYLVTEPDYKRIELPEEEE 209 (214)
T ss_pred HHHHHHHHHHHHHHHHHhccCcccCCCCCchhhh
Confidence 444333333333 455667799999987766654
No 205
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=49.59 E-value=1.5e+02 Score=24.67 Aligned_cols=62 Identities=10% Similarity=-0.193 Sum_probs=47.4
Q ss_pred hHHHHHHHHhhh--chhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchh
Q psy1755 2 SLLGSGRSFFMT--GYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDI 64 (103)
Q Consensus 2 av~~~l~G~f~~--~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~ 64 (103)
+...+++||+-- +..|+....-.+ -+-.+++...|.+.......-+++-+..+++.|+.|..
T Consensus 29 ~~~lC~fGF~~e~R~n~s~a~p~L~~-elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K 92 (511)
T TIGR00806 29 VLYLCFYGFMAQFRPGESFITPYLLT-VLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYK 92 (511)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHH-HcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 455788899844 577777777776 67777777688888888888888888888888888754
No 206
>KOG0254|consensus
Probab=48.46 E-value=91 Score=24.86 Aligned_cols=87 Identities=15% Similarity=0.106 Sum_probs=50.4
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCc-hhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHH-HHHH-HH
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPE-GTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLAL-VLGT-LL 80 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e-~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~-~~~~-il 80 (103)
.+.....|..+.-|+..-+..| .||..- +...++....++.++.+....+..+....+....-....+.+ +... ..
T Consensus 401 ~~~~v~~f~~g~g~v~w~~~sE-ifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv 479 (513)
T KOG0254|consen 401 LCLFIFSFAIGWGPVPWVIVSE-IFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFV 479 (513)
T ss_pred HHHHHHHHhcccccchhhhhhc-cCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHh
Confidence 3455666777788888888899 677665 777777788888887776555444444433122223333333 3333 34
Q ss_pred HhhcCCcchhh
Q psy1755 81 TLIIPPDLRRQ 91 (103)
Q Consensus 81 ~~f~k~~~kR~ 91 (103)
.++++|.-.|.
T Consensus 480 ~~~~pETkg~s 490 (513)
T KOG0254|consen 480 FFFVPETKGLT 490 (513)
T ss_pred eEEcccCCCCc
Confidence 44455544443
No 207
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=48.18 E-value=1.1e+02 Score=25.01 Aligned_cols=52 Identities=13% Similarity=0.025 Sum_probs=41.3
Q ss_pred HHHHhhhchhH-HHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhh
Q psy1755 7 GRSFFMTGYLP-VGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLF 58 (103)
Q Consensus 7 l~G~f~~~~~P-i~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~ 58 (103)
+...+.+-.+. ++-.+++|+|-+..-..--+++...+|+..++-..+..++.
T Consensus 137 ~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 137 MAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666 78999999887777788899999999999988887777655
No 208
>KOG0253|consensus
Probab=47.84 E-value=12 Score=30.67 Aligned_cols=80 Identities=18% Similarity=0.325 Sum_probs=52.3
Q ss_pred HHHhhhchhHHHHHHHHhhcCCCCc-hhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCC
Q psy1755 8 RSFFMTGYLPVGFELAAELTYPEPE-GTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPP 86 (103)
Q Consensus 8 ~G~f~~~~~Pi~lEla~E~tyPv~e-~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~ 86 (103)
.-+|.++.+-+.+.+.-| .||-.- ++.-|.-...+-++|++-+++. ++-.......-.+..++++++.++.+|++-
T Consensus 444 arafisg~fqvaYvYtPE-VyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPi 520 (528)
T KOG0253|consen 444 ARAFISGAFQVAYVYTPE-VYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPI 520 (528)
T ss_pred HHHHHhchheEEEEecCc-ccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeee
Confidence 345666666667777778 677544 5566777777888888888775 443333333333445778888888888876
Q ss_pred cchh
Q psy1755 87 DLRR 90 (103)
Q Consensus 87 ~~kR 90 (103)
+-|-
T Consensus 521 EtkG 524 (528)
T KOG0253|consen 521 ETKG 524 (528)
T ss_pred ccCC
Confidence 5443
No 209
>KOG3626|consensus
Probab=47.48 E-value=47 Score=28.85 Aligned_cols=85 Identities=15% Similarity=0.253 Sum_probs=43.2
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhc----cc---------------chhHH
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFT----AF---------------GDIVA 66 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~----~~---------------~~~~~ 66 (103)
.+.|....|++|+|.-+.=|=.=.-.-..=-|+++ +.-++|-++.++.+-+.. +. |..|.
T Consensus 245 ~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~-~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWl 323 (735)
T KOG3626|consen 245 LLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILY-SMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWL 323 (735)
T ss_pred HHhhcCCCCCccCCCccccccccccCCcHHHHHHH-HHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHH
Confidence 46777888889988766555322221122223332 233444444444432211 11 22355
Q ss_pred HHHHH-HHHHHHHHHHhhcCCcchhh
Q psy1755 67 NIALC-LALVLGTLLTLIIPPDLRRQ 91 (103)
Q Consensus 67 ~~~~~-~~~~~~~il~~f~k~~~kR~ 91 (103)
.+..+ .+.++..+.++|++.+++|.
T Consensus 324 GFLi~g~~~~~~a~p~f~fPk~lp~~ 349 (735)
T KOG3626|consen 324 GFLICGALLLFSAVPLFFFPKELPKS 349 (735)
T ss_pred HHHHHHHHHHHHHHHHHhCcccCccc
Confidence 54444 45566677777777766653
No 210
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=46.76 E-value=23 Score=22.94 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=13.8
Q ss_pred HHHHHHhhcCCcchhhhhhhc
Q psy1755 76 LGTLLTLIIPPDLRRQAAHSD 96 (103)
Q Consensus 76 ~~~il~~f~k~~~kR~~~e~~ 96 (103)
.+...++.+|++.||++..++
T Consensus 19 ~~ifyFli~RPQrKr~K~~~~ 39 (97)
T COG1862 19 FAIFYFLIIRPQRKRMKEHQE 39 (97)
T ss_pred HHHHHHhhcCHHHHHHHHHHH
Confidence 333444467888888877765
No 211
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=46.16 E-value=21 Score=23.73 Aligned_cols=16 Identities=0% Similarity=0.104 Sum_probs=11.3
Q ss_pred HhhcCCcchhhhhhhc
Q psy1755 81 TLIIPPDLRRQAAHSD 96 (103)
Q Consensus 81 ~~f~k~~~kR~~~e~~ 96 (103)
++.+|++.||++..++
T Consensus 17 yf~iRPQkKr~Ke~~e 32 (113)
T PRK06531 17 FFMQRQQKKQAQERQN 32 (113)
T ss_pred HheechHHHHHHHHHH
Confidence 4568888888766654
No 212
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=45.94 E-value=22 Score=22.19 Aligned_cols=18 Identities=39% Similarity=0.643 Sum_probs=11.0
Q ss_pred HHHhhcCCcchhhhhhhc
Q psy1755 79 LLTLIIPPDLRRQAAHSD 96 (103)
Q Consensus 79 il~~f~k~~~kR~~~e~~ 96 (103)
..++.+|++.||++..++
T Consensus 16 ~yf~~~rpqkK~~k~~~~ 33 (84)
T TIGR00739 16 FYFLIIRPQRKRRKAHKK 33 (84)
T ss_pred HHHheechHHHHHHHHHH
Confidence 344456777777666654
No 213
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=45.93 E-value=1.3e+02 Score=24.34 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=38.9
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcC-CCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchh
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTY-PEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDI 64 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~ty-Pv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~ 64 (103)
..++|+-.++.+|+++-+..--+- |...+.=+|+....|-+.-..-+.+++.+.|..|..
T Consensus 303 ~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw 363 (395)
T COG2807 303 ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSW 363 (395)
T ss_pred HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCCh
Confidence 367788888899999888776442 222233445555555555566677777777777763
No 214
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=44.30 E-value=1.4e+02 Score=22.50 Aligned_cols=58 Identities=17% Similarity=-0.014 Sum_probs=35.2
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHh-hhhHHHHHHHHHhhhcccch
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASA-QVFGILFTVVYGQLFTAFGD 63 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~-qi~g~i~~~i~~~l~~~~~~ 63 (103)
..+.|+......|....+..+. .|...+...|+....+ ++.+.+-+.+.+.+.|..|.
T Consensus 300 ~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~ 358 (382)
T PRK11128 300 QILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA 358 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 4456666666677777777774 2333345555555333 33446677788888887764
No 215
>COG3301 NrfD Formate-dependent nitrite reductase, membrane component [Inorganic ion transport and metabolism]
Probab=43.27 E-value=1.6e+02 Score=22.97 Aligned_cols=91 Identities=20% Similarity=0.149 Sum_probs=55.6
Q ss_pred HHHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhh-HHHHHHHHHhhhccc--------------------
Q psy1755 3 LLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVF-GILFTVVYGQLFTAF-------------------- 61 (103)
Q Consensus 3 v~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~-g~i~~~i~~~l~~~~-------------------- 61 (103)
+...++|.+.+.+ .|++++++..||-=.+-.--.+...+.+. |.....+...+.++.
T Consensus 136 iL~~i~gi~~~aY--TGflLaa~~giPFwNnp~LPvLfL~sg~sag~a~~~L~~lv~~~~~~~~~~~~~~~r~~~~v~~~ 213 (305)
T COG3301 136 ILMAILGVLLGAY--TGFLLAALKGIPFWNNPALPVLFLFSGLSAGSAALILLMLVRTRENPHSTESKFLHRFEIPVVVT 213 (305)
T ss_pred HHHHHHHHHHHHH--HHHHHHHhcCCCcccCchhHHHHHHhhhhhhHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHH
Confidence 3445556555554 48999999999987777766676666544 222333333333330
Q ss_pred --------------c--------------hhHHHHHHHHHHHHHHHHHhhcCCcchhhhhhh
Q psy1755 62 --------------G--------------DIVANIALCLALVLGTLLTLIIPPDLRRQAAHS 95 (103)
Q Consensus 62 --------------~--------------~~~~~~~~~~~~~~~~il~~f~k~~~kR~~~e~ 95 (103)
| -.|.-++..+.+.++.+.-.+.+.-+||+..+.
T Consensus 214 ell~la~f~~l~~~G~~a~~~a~~~al~gg~~a~~fwiGV~giGliiplll~~~~~~k~~~~ 275 (305)
T COG3301 214 ELLLLAAFFVLLSLGGVAAARALATALAGGFWAWVFWIGVLGLGLIIPLLLKFGVNPKVPES 275 (305)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 0 024556677778888777777777766665544
No 216
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=43.21 E-value=62 Score=21.35 Aligned_cols=9 Identities=11% Similarity=0.302 Sum_probs=4.0
Q ss_pred hhhcCCCCC
Q psy1755 93 AHSDFNIKP 101 (103)
Q Consensus 93 ~e~~~~~~~ 101 (103)
.+++.+++|
T Consensus 121 ~~~~~~~~p 129 (135)
T PF04246_consen 121 LKKKSKFQP 129 (135)
T ss_pred hccCCCCce
Confidence 333444554
No 217
>PRK10429 melibiose:sodium symporter; Provisional
Probab=42.50 E-value=1.7e+02 Score=23.01 Aligned_cols=54 Identities=7% Similarity=-0.021 Sum_probs=32.9
Q ss_pred HHHHHhhhchhHHHHHHHHhhc----C---CCCchhHHHHHHHHhhhhHHHHHHHHHhhhc
Q psy1755 6 SGRSFFMTGYLPVGFELAAELT----Y---PEPEGTSSGLLNASAQVFGILFTVVYGQLFT 59 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~t----y---Pv~e~~ssgll~~~~qi~g~i~~~i~~~l~~ 59 (103)
.+.|+..+...+...-+..|+. + --.|+...|......++.+.+-..+.+++.+
T Consensus 332 ~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 332 ILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555541 2 2346778888888877777776666666553
No 218
>KOG0569|consensus
Probab=41.26 E-value=1.9e+02 Score=23.81 Aligned_cols=67 Identities=15% Similarity=0.154 Sum_probs=33.4
Q ss_pred HHHhhcCCCCchhHHHHHHHHhhhhHHHH-HHHHHhhhcccchhHHHHHHH--HHHHHHHHHHhhcCCcch
Q psy1755 22 LAAELTYPEPEGTSSGLLNASAQVFGILF-TVVYGQLFTAFGDIVANIALC--LALVLGTLLTLIIPPDLR 89 (103)
Q Consensus 22 la~E~tyPv~e~~ssgll~~~~qi~g~i~-~~i~~~l~~~~~~~~~~~~~~--~~~~~~~il~~f~k~~~k 89 (103)
+-.|++...-.+..+.+...+.+++-.+- .+....+.++ .+.|...+.. ....+..+++.+++|.-|
T Consensus 140 yl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt-~~~W~~l~~~~~i~~~~~l~~l~~~PESPk 209 (485)
T KOG0569|consen 140 YLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGT-EDLWPYLLAFPLIPALLQLALLPFLPESPK 209 (485)
T ss_pred HHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCC-CcchHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 44598876666666655555555444332 1112223332 2335443332 334666667777777433
No 219
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=40.78 E-value=1.1e+02 Score=26.03 Aligned_cols=54 Identities=7% Similarity=0.045 Sum_probs=29.9
Q ss_pred HHHHHHhhhhHHHHHHHHHhhhccc---ch--hHHHHHH--HHHHHHHHHHHhhcCCcchh
Q psy1755 37 GLLNASAQVFGILFTVVYGQLFTAF---GD--IVANIAL--CLALVLGTLLTLIIPPDLRR 90 (103)
Q Consensus 37 gll~~~~qi~g~i~~~i~~~l~~~~---~~--~~~~~~~--~~~~~~~~il~~f~k~~~kR 90 (103)
.+-.+++|+++++-..+..++.++. |. .|...+. +++.+++++.....++.||+
T Consensus 127 ~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~ 187 (654)
T TIGR00926 127 SFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKK 187 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 4556678888888888888776543 21 2333232 23344444444444555544
No 220
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=40.32 E-value=1.4e+02 Score=21.69 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=24.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhhhcccchh
Q psy1755 35 SSGLLNASAQVFGILFTVVYGQLFTAFGDI 64 (103)
Q Consensus 35 ssgll~~~~qi~g~i~~~i~~~l~~~~~~~ 64 (103)
..|++.....+...+...+.+.+.|+.|..
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r 67 (366)
T TIGR00886 38 QLGNLVAVPVLAGAVLRIILGFLVDKFGPR 67 (366)
T ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHhCch
Confidence 457788888888888888999999998753
No 221
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=39.22 E-value=14 Score=24.61 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHhhcCCcchhhhhhh
Q psy1755 69 ALCLALVLGTLLTLIIPPDLRRQAAHS 95 (103)
Q Consensus 69 ~~~~~~~~~~il~~f~k~~~kR~~~e~ 95 (103)
++.+++++.+++++|+--.-+|++..+
T Consensus 3 ~l~~iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 3 VLFAIIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333444444444444444334444433
No 222
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=38.09 E-value=48 Score=23.28 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=20.7
Q ss_pred HHHhhhcccch-----------hHHHHHH-HHHHHHHHHHHhhcCCcch
Q psy1755 53 VYGQLFTAFGD-----------IVANIAL-CLALVLGTLLTLIIPPDLR 89 (103)
Q Consensus 53 i~~~l~~~~~~-----------~~~~~~~-~~~~~~~~il~~f~k~~~k 89 (103)
|.+++.+++|+ .+..|.. .++++++..++.....+.+
T Consensus 83 Iid~mVaRYG~FVly~Pp~~~~T~lLW~~Pv~llllG~~~~~~~~rrr~ 131 (153)
T COG3088 83 IIDYMVARYGEFVLYKPPLTGQTLLLWGLPVVLLLLGGVLLVRRARRRV 131 (153)
T ss_pred HHHHHHHhhcceeeecCCCchhHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 34556666764 2445555 3455667666666555443
No 223
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=38.05 E-value=1.7e+02 Score=23.94 Aligned_cols=49 Identities=16% Similarity=0.056 Sum_probs=36.6
Q ss_pred hhhchhH-HHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhc
Q psy1755 11 FMTGYLP-VGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFT 59 (103)
Q Consensus 11 f~~~~~P-i~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~ 59 (103)
+.+-.++ ++-.+|+|.|-+..-..-=+++...+|+.+++-..+...+.+
T Consensus 156 wgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 156 WGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556 478999997766555788899999999998877777665554
No 224
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=37.50 E-value=2.1e+02 Score=22.70 Aligned_cols=80 Identities=11% Similarity=0.041 Sum_probs=39.4
Q ss_pred HHHHhhhchhHHHHHHHHhhcCCCCchhH---HHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755 7 GRSFFMTGYLPVGFELAAELTYPEPEGTS---SGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI 83 (103)
Q Consensus 7 l~G~f~~~~~Pi~lEla~E~tyPv~e~~s---sgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f 83 (103)
+.+++.....+..=-+.+|..- ...+.. .++.+.+.+++.++-..+.+.+.+..+.....+......++......+
T Consensus 129 l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~ 207 (468)
T TIGR00788 129 LAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNL 207 (468)
T ss_pred HHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHh
Confidence 3444444444555555666443 222222 224444434555554555666665555444444444444444555677
Q ss_pred cCCc
Q psy1755 84 IPPD 87 (103)
Q Consensus 84 ~k~~ 87 (103)
+||+
T Consensus 208 ~~E~ 211 (468)
T TIGR00788 208 SKER 211 (468)
T ss_pred cccc
Confidence 7876
No 225
>COG1108 ZnuB ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]
Probab=37.34 E-value=1.8e+02 Score=22.09 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=31.5
Q ss_pred hhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHH
Q psy1755 15 YLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYG 55 (103)
Q Consensus 15 ~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~ 55 (103)
..-...|+..+ .+.+.|+++.|+++..+=-.|+++....+
T Consensus 75 ~~a~~i~~l~~-~~~~~~D~aigiv~s~~~alGlvl~s~~~ 114 (274)
T COG1108 75 LAALLIGYLRR-RSKLKEDTAIGIVFSSGLALGLVLLSLVP 114 (274)
T ss_pred HHHHHHHHHHh-hccchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33445555555 89999999999999999999998877654
No 226
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=37.11 E-value=61 Score=26.03 Aligned_cols=77 Identities=19% Similarity=0.222 Sum_probs=37.3
Q ss_pred HHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCCc
Q psy1755 8 RSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPPD 87 (103)
Q Consensus 8 ~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~~ 87 (103)
+|++.++..|+. |--+| .+-...+.-=|=.=+.|.+..++-..+.|.+.+.++. ..-|...++..+..++.++.|++
T Consensus 114 l~~~f~~~~~~~-Ea~~e-r~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~-~~fwi~s~~~~il~lll~~~~~~ 190 (412)
T PF01306_consen 114 LGLVFNAGVPLS-EAYAE-RVSRRNGFEYGRARMWGSIGFAIASLLAGILFNINPN-IIFWIASAAAIILLLLLLLLKPD 190 (412)
T ss_dssp TTTTTTTHHHHH-HHHHH-HHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHSS---
T ss_pred HHHHHcccchHH-HHHHH-HHHHHhcCCcchHHHHhhHHHHHHHHHhheeeeeCcc-HHHHHHHHHHHHHHHHHHHcCCc
Confidence 344455555655 44444 2223334444556677777777777777777653222 23333222323334445556654
No 227
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=36.25 E-value=20 Score=24.18 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=5.2
Q ss_pred HHHHhhcCCcchhhhh
Q psy1755 78 TLLTLIIPPDLRRQAA 93 (103)
Q Consensus 78 ~il~~f~k~~~kR~~~ 93 (103)
+++.+++|++-||...
T Consensus 82 lli~y~irR~~Kk~~~ 97 (122)
T PF01102_consen 82 LLISYCIRRLRKKSSS 97 (122)
T ss_dssp HHHHHHHHHHS-----
T ss_pred HHHHHHHHHHhccCCC
Confidence 3344555554444433
No 228
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=35.59 E-value=49 Score=20.77 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhhcCCcchhhhhh
Q psy1755 68 IALCLALVLGTLLTLIIPPDLRRQAAH 94 (103)
Q Consensus 68 ~~~~~~~~~~~il~~f~k~~~kR~~~e 94 (103)
+.+++.+.++.+.|.++-.+|||.+..
T Consensus 10 ialiv~~iiaIvvW~iv~ieYrk~~rq 36 (81)
T PF00558_consen 10 IALIVALIIAIVVWTIVYIEYRKIKRQ 36 (81)
T ss_dssp HHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666777777766666665443
No 229
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=35.38 E-value=1.3e+02 Score=19.89 Aligned_cols=39 Identities=28% Similarity=0.273 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcC
Q psy1755 47 GILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIP 85 (103)
Q Consensus 47 g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k 85 (103)
|.+...+.+.+.-+....+..++-..+...+.+.+-...
T Consensus 67 G~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 67 GILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 333334444433222223555555555566665544433
No 230
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=35.12 E-value=18 Score=24.31 Aligned_cols=38 Identities=8% Similarity=0.023 Sum_probs=20.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhhcCCcchhhhhhhc
Q psy1755 59 TAFGDIVANIALCLALVLGTLLTLIIPPDLRRQAAHSD 96 (103)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~il~~f~k~~~kR~~~e~~ 96 (103)
++....+.|++++++..+.++....+--=|||.|.|.+
T Consensus 53 ~~~~p~p~~iffavcI~l~~~s~~lLI~WYR~gdl~Pk 90 (118)
T PF10856_consen 53 PQDPPKPLHIFFAVCILLICISAILLIFWYRQGDLDPK 90 (118)
T ss_pred cCCCCCceEEehHHHHHHHHHHHHhheeehhcCCCChh
Confidence 33333456777776665555544444444566555544
No 231
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.60 E-value=64 Score=21.56 Aligned_cols=34 Identities=29% Similarity=0.296 Sum_probs=20.1
Q ss_pred hhhhHHHHHHHHHhhhcccc-h-hHHHHHHHHHHHHHHH
Q psy1755 43 AQVFGILFTVVYGQLFTAFG-D-IVANIALCLALVLGTL 79 (103)
Q Consensus 43 ~qi~g~i~~~i~~~l~~~~~-~-~~~~~~~~~~~~~~~i 79 (103)
=-+-|+.....++|+.|++- + .|..+ ++++++++
T Consensus 51 efIsGilVGa~iG~llD~~agTsPwglI---v~lllGf~ 86 (116)
T COG5336 51 EFISGILVGAGIGWLLDKFAGTSPWGLI---VFLLLGFG 86 (116)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHH---HHHHHHHH
Confidence 33556677777888888863 2 35554 44444443
No 232
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=34.28 E-value=69 Score=26.57 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=21.0
Q ss_pred hchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHH
Q psy1755 13 TGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGI 48 (103)
Q Consensus 13 ~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~ 48 (103)
..+-|+++|++..+..|.--+...+ +|..++..+-
T Consensus 409 L~iSpvGLs~~t~laP~~~~s~~ma-~wfLt~a~~~ 443 (498)
T COG3104 409 LFISPVGLSMVTKLAPPALKSFIMA-MWFLTVAAGQ 443 (498)
T ss_pred HHhCHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHH
Confidence 3467999999999887633333333 2344444443
No 233
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=32.97 E-value=1.2e+02 Score=20.73 Aligned_cols=45 Identities=16% Similarity=0.193 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhhc----ccchhHHHHHHHHHHHHHHHHHhhcCCcchhh
Q psy1755 47 GILFTVVYGQLFT----AFGDIVANIALCLALVLGTLLTLIIPPDLRRQ 91 (103)
Q Consensus 47 g~i~~~i~~~l~~----~~~~~~~~~~~~~~~~~~~il~~f~k~~~kR~ 91 (103)
.+.+..+..|+.. ++++.|-.++-....+++++.++++...++|.
T Consensus 19 ~~~~~~Ii~W~i~Gp~~~~sdtWQLviNt~ttIitFlmvfLIQn~q~Rd 67 (132)
T PF04120_consen 19 VIAVAVIIVWAISGPVFGFSDTWQLVINTATTIITFLMVFLIQNTQNRD 67 (132)
T ss_pred HHHHHHHHHHHHHhccccCcchHHHHHccHHHHHHHHHHHHHHhhhhhH
Confidence 3333444444443 23555666666677777777788887766663
No 234
>PRK10746 putative transport protein YifK; Provisional
Probab=32.29 E-value=1.1e+02 Score=24.37 Aligned_cols=18 Identities=22% Similarity=-0.062 Sum_probs=12.0
Q ss_pred HHhhcCCcchhhhhhhcC
Q psy1755 80 LTLIIPPDLRRQAAHSDF 97 (103)
Q Consensus 80 l~~f~k~~~kR~~~e~~~ 97 (103)
...++...+||.|.||-+
T Consensus 443 ~~y~~~~~~~~~~~~~~~ 460 (461)
T PRK10746 443 LIYKVFGLNRHGKAHKLE 460 (461)
T ss_pred HHHHHHHhhhhcchhhcc
Confidence 344456677888888754
No 235
>KOG3415|consensus
Probab=32.05 E-value=1.1e+02 Score=20.71 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=16.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHH
Q psy1755 35 SSGLLNASAQVFGILFTVVYG 55 (103)
Q Consensus 35 ssgll~~~~qi~g~i~~~i~~ 55 (103)
---++..+-|++|+++.++.+
T Consensus 41 llDViyW~rQVi~l~lGviwG 61 (129)
T KOG3415|consen 41 LLDVIYWIRQVIGLILGVIWG 61 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345678889999998888865
No 236
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=31.92 E-value=1.5e+02 Score=22.07 Aligned_cols=41 Identities=7% Similarity=0.171 Sum_probs=17.5
Q ss_pred HHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCCcch
Q psy1755 49 LFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPPDLR 89 (103)
Q Consensus 49 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~~~k 89 (103)
+.++++.++..-.+..|...++.-..+...+....-...+|
T Consensus 9 ~~il~fa~Vla~~p~y~~~~filYfiv~~~i~~~~~~Rs~r 49 (233)
T PF09973_consen 9 VSILLFAAVLAFFPQYYFEVFILYFIVFFGIMIVMGIRSYR 49 (233)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 33344443333334434334444444444444444445555
No 237
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=31.15 E-value=1e+02 Score=17.17 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhhcCCcchhhh
Q psy1755 72 LALVLGTLLTLIIPPDLRRQA 92 (103)
Q Consensus 72 ~~~~~~~il~~f~k~~~kR~~ 92 (103)
.+++++.+++.+-|.+-||-+
T Consensus 20 ~~~Figiv~wa~~p~~k~~f~ 40 (48)
T cd01324 20 ALFFLGVVVWAFRPGRKKAFD 40 (48)
T ss_pred HHHHHHHHHHHhCCCcchhHH
Confidence 356777778887777544433
No 238
>PF05255 UPF0220: Uncharacterised protein family (UPF0220); InterPro: IPR007919 This family of proteins is functionally uncharacterised.
Probab=31.03 E-value=1.5e+02 Score=20.83 Aligned_cols=50 Identities=14% Similarity=0.230 Sum_probs=35.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHhhhccc--chh---HHHHHHHHHHHHHHHHHhhcC
Q psy1755 36 SGLLNASAQVFGILFTVVYGQLFTAF--GDI---VANIALCLALVLGTLLTLIIP 85 (103)
Q Consensus 36 sgll~~~~qi~g~i~~~i~~~l~~~~--~~~---~~~~~~~~~~~~~~il~~f~k 85 (103)
-|+...+|.+.|.+-+.+...+.+++ .+. +.+.+...+..++.+++.+-|
T Consensus 105 igf~l~fggl~~s~~vli~~yv~~~~~~~~~~~Gva~vlqN~lI~~Sslvl~~~r 159 (166)
T PF05255_consen 105 IGFALSFGGLAGSVWVLILKYVVPQYTKPTLWPGVANVLQNALIFLSSLVLWFGR 159 (166)
T ss_pred HHHHHHHHHHHHHHHHhhcccccCCCCCCCcccccHHHHHHHHHHHHHHHHHhcc
Confidence 37788888899988888888777753 333 356666677777776666655
No 239
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=30.76 E-value=3.3e+02 Score=23.05 Aligned_cols=26 Identities=12% Similarity=-0.027 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHH-HhhcCCcch
Q psy1755 64 IVANIALCLALVLGTLL-TLIIPPDLR 89 (103)
Q Consensus 64 ~~~~~~~~~~~~~~~il-~~f~k~~~k 89 (103)
.|.-+.......+++++ .+|++++-|
T Consensus 196 Rw~~~~~~i~~~i~~vl~~~fY~PP~~ 222 (599)
T PF06609_consen 196 RWIFYIFIIWSGIALVLIFFFYFPPPR 222 (599)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCCch
Confidence 35555554444555443 445555433
No 240
>PRK11056 hypothetical protein; Provisional
Probab=29.62 E-value=1.7e+02 Score=19.75 Aligned_cols=67 Identities=21% Similarity=0.193 Sum_probs=31.7
Q ss_pred HHHHHHhh------cCCCCchhHHHHHHHHhhhhHHHHHHHHHhh-hcccchhHHHHHHHHHHHHHHHHHhhcCCcchhh
Q psy1755 19 GFELAAEL------TYPEPEGTSSGLLNASAQVFGILFTVVYGQL-FTAFGDIVANIALCLALVLGTLLTLIIPPDLRRQ 91 (103)
Q Consensus 19 ~lEla~E~------tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l-~~~~~~~~~~~~~~~~~~~~~il~~f~k~~~kR~ 91 (103)
.+-+++-| ..|.+|++.. .+.+..+=-+ +..+++ ...+.+..+|.+ ...+.+...+|+-.|-+.+++
T Consensus 43 aLvLavycLyQ~Yl~~~m~eg~P~---~a~acFflG~--f~ySA~vraeyPeiGSNF~-p~il~~~L~~Wi~~kl~~~~~ 116 (120)
T PRK11056 43 ALVLAVYCLHQRYLNRPMPEGLPG---LAAACFFLGV--FLYSAFVRAEYPEIGSNFF-PAVLSVILVFWIGRKLRNRKK 116 (120)
T ss_pred HHHHHHHHHHHHHhcCCCCCCChH---HHHHHHHHHH--HHHHHHHHhcCcccccchH-HHHHHHHHHHHHHHHHhcccc
Confidence 56667655 4588888762 2222222111 122333 233444445543 333444455566555554433
No 241
>COG2056 Predicted permease [General function prediction only]
Probab=29.48 E-value=1.4e+02 Score=24.26 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q psy1755 65 VANIALCLALVLGTLLTLII 84 (103)
Q Consensus 65 ~~~~~~~~~~~~~~il~~f~ 84 (103)
..+|+......++.++-+|+
T Consensus 192 ~am~ip~lgMi~GLl~ai~~ 211 (444)
T COG2056 192 KAMWIPGLGMIVGLLLAIFV 211 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36677777777777766665
No 242
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=29.40 E-value=66 Score=20.93 Aligned_cols=16 Identities=44% Similarity=0.669 Sum_probs=8.7
Q ss_pred HhhcCCcchhhhhhhc
Q psy1755 81 TLIIPPDLRRQAAHSD 96 (103)
Q Consensus 81 ~~f~k~~~kR~~~e~~ 96 (103)
++.+|++.||++..++
T Consensus 33 f~~~RpqkK~~k~~~~ 48 (106)
T PRK05585 33 FLIIRPQQKRQKEHKK 48 (106)
T ss_pred HHhccHHHHHHHHHHH
Confidence 3345666666655544
No 243
>KOG4686|consensus
Probab=29.16 E-value=3.1e+02 Score=22.13 Aligned_cols=40 Identities=13% Similarity=0.170 Sum_probs=30.4
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHhhhcccch-hHHHHHHHH
Q psy1755 33 GTSSGLLNASAQVFGILFTVVYGQLFTAFGD-IVANIALCL 72 (103)
Q Consensus 33 ~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~-~~~~~~~~~ 72 (103)
++.-|.+...-|+.-.+.+++.+.+.|+.|. .|...+...
T Consensus 387 GTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~ 427 (459)
T KOG4686|consen 387 GTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLI 427 (459)
T ss_pred cchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHH
Confidence 7888999988888888888888888888774 355544433
No 244
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=28.59 E-value=2.1e+02 Score=20.10 Aligned_cols=28 Identities=18% Similarity=0.250 Sum_probs=16.8
Q ss_pred HHHHHHHHH-HHHHHHHHhhcCCcchhhh
Q psy1755 65 VANIALCLA-LVLGTLLTLIIPPDLRRQA 92 (103)
Q Consensus 65 ~~~~~~~~~-~~~~~il~~f~k~~~kR~~ 92 (103)
+..|.++++ ++++.++++=+|++||=-+
T Consensus 62 ~s~~~ftv~fv~m~~~llfDI~P~YrfED 90 (155)
T PF10777_consen 62 GSVWGFTVFFVVMAAFLLFDIKPRYRFED 90 (155)
T ss_pred HHHHHHHHHHHHHHHHHHhhccceeeecc
Confidence 444555544 4555566666899987443
No 245
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=28.30 E-value=98 Score=19.76 Aligned_cols=10 Identities=40% Similarity=0.620 Sum_probs=3.9
Q ss_pred HHHHHHHHhh
Q psy1755 74 LVLGTLLTLI 83 (103)
Q Consensus 74 ~~~~~il~~f 83 (103)
++++++|++.
T Consensus 11 l~LA~lLlis 20 (95)
T PF07172_consen 11 LLLAALLLIS 20 (95)
T ss_pred HHHHHHHHHH
Confidence 3333444333
No 246
>KOG1330|consensus
Probab=28.00 E-value=12 Score=30.93 Aligned_cols=93 Identities=16% Similarity=-0.037 Sum_probs=49.1
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccch-hHHHHHHHHHHHHHHHHHhhc
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGD-IVANIALCLALVLGTLLTLII 84 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~il~~f~ 84 (103)
++.|+--....|+.=-+-+...--..-+..-|+.++...+++.+=..+-+.+.+..+. .|.-+.-.++..+..++.+++
T Consensus 129 ~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f 208 (493)
T KOG1330|consen 129 GFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLF 208 (493)
T ss_pred HHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhh
Confidence 3444444455565555666633223336666777777776654332232323322222 134444456667777777777
Q ss_pred CCcchhhhhhhcCC
Q psy1755 85 PPDLRRQAAHSDFN 98 (103)
Q Consensus 85 k~~~kR~~~e~~~~ 98 (103)
+.+.+|.+.|+.++
T Consensus 209 ~~eP~rga~~~~~~ 222 (493)
T KOG1330|consen 209 VREPERGARDEVDG 222 (493)
T ss_pred ccCccccccccccc
Confidence 77767755555433
No 247
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=26.69 E-value=16 Score=30.04 Aligned_cols=36 Identities=14% Similarity=0.014 Sum_probs=2.4
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHH
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNA 41 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~ 41 (103)
.+.|+-..|++|+|.-+-=|=.-|.+-..=-|++..
T Consensus 149 ~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~ 184 (539)
T PF03137_consen 149 LLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYA 184 (539)
T ss_dssp ---SSS------------------------------
T ss_pred HHHhccccCCccceeeeeccccccccCccchhhhhH
Confidence 457788889999999888886555444444444433
No 248
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=26.31 E-value=1.1e+02 Score=20.38 Aligned_cols=29 Identities=21% Similarity=-0.080 Sum_probs=19.6
Q ss_pred hhcccchhHHHHHHHHHHHHHHHHHhhcC
Q psy1755 57 LFTAFGDIVANIALCLALVLGTLLTLIIP 85 (103)
Q Consensus 57 l~~~~~~~~~~~~~~~~~~~~~il~~f~k 85 (103)
+..+.-....||-...+++.++..|.+=+
T Consensus 60 l~~~~~~~A~nwavgsF~l~s~~~we~Cr 88 (118)
T PF12597_consen 60 LFTSNPRKAANWAVGSFFLGSLGSWEYCR 88 (118)
T ss_pred cccCCCccchhhhhHHHHHHHHHHHHHHH
Confidence 34343445789988888888888766543
No 249
>PRK10133 L-fucose transporter; Provisional
Probab=26.15 E-value=3.2e+02 Score=21.32 Aligned_cols=48 Identities=15% Similarity=-0.029 Sum_probs=29.9
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchh-HHHHHHHHhhhhHHHHHHHH
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGT-SSGLLNASAQVFGILFTVVY 54 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~-ssgll~~~~qi~g~i~~~i~ 54 (103)
.+.|+..+...+...-+..|. .|..+.. -.++.....++++.+=..+.
T Consensus 125 ~l~G~g~g~~~~~~~~~v~~~-~~~~~~~~~~s~~~~~~~~G~~~g~~~g 173 (438)
T PRK10133 125 FIIAAGLGCLETAANPFVTVL-GPESSGHFRLNLAQTFNSFGAIIAVVFG 173 (438)
T ss_pred HHHHHHHHHHHhhHHHHHHHh-CChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777774 4555543 46677776666555544443
No 250
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=25.67 E-value=37 Score=20.93 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=8.9
Q ss_pred HHhhcCCcchhhhhhhc
Q psy1755 80 LTLIIPPDLRRQAAHSD 96 (103)
Q Consensus 80 l~~f~k~~~kR~~~e~~ 96 (103)
.++.+|++-||++..++
T Consensus 16 yf~~~rpqkk~~k~~~~ 32 (82)
T PF02699_consen 16 YFLMIRPQKKQQKEHQE 32 (82)
T ss_dssp HHHTHHHHHHHHHHHTT
T ss_pred hhheecHHHHHHHHHHH
Confidence 34445666565555444
No 251
>PF14143 YrhC: YrhC-like protein
Probab=25.62 E-value=1.7e+02 Score=17.92 Aligned_cols=18 Identities=11% Similarity=0.063 Sum_probs=7.9
Q ss_pred Hhhhcccch--hHHHHHHHH
Q psy1755 55 GQLFTAFGD--IVANIALCL 72 (103)
Q Consensus 55 ~~l~~~~~~--~~~~~~~~~ 72 (103)
|.+.++.+. .-.++.+.+
T Consensus 27 G~viP~~~~~~~~~~~m~~~ 46 (72)
T PF14143_consen 27 GTVIPIGAKETAQKYIMMGA 46 (72)
T ss_pred HhhCCccchhHHHHHHHHHH
Confidence 445554432 234454443
No 252
>KOG2533|consensus
Probab=25.25 E-value=2e+02 Score=23.55 Aligned_cols=52 Identities=23% Similarity=0.148 Sum_probs=39.8
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCc-hhHHHHHHHHhhhhHHHHHHHHHhhh
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPE-GTSSGLLNASAQVFGILFTVVYGQLF 58 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e-~~ssgll~~~~qi~g~i~~~i~~~l~ 58 (103)
.++|++-++..|.. ..-.-.-|..+| +.-.|+.+.+++++++.=..+...+.
T Consensus 142 ~llGl~es~~wP~~-~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~ 194 (495)
T KOG2533|consen 142 FLLGLFESGGWPGV-VAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVF 194 (495)
T ss_pred HHHHHHhcccchHH-HHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhh
Confidence 57899999999854 344444788888 88899999999888887777766643
No 253
>KOG1479|consensus
Probab=25.12 E-value=83 Score=25.38 Aligned_cols=55 Identities=16% Similarity=0.042 Sum_probs=42.5
Q ss_pred HHHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhh
Q psy1755 3 LLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLF 58 (103)
Q Consensus 3 v~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~ 58 (103)
+..+++|+.-+=...+.+=+|-+ ++|-+|.-.+|.+....-..|+....+.+++.
T Consensus 348 ~l~~~lglsnGYltsl~m~~aPk-~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~l~ 402 (406)
T KOG1479|consen 348 FLMSLLGLSNGYLTSLIMMYAPK-QVKPSEKEAAGNLMVFFLVGGLALGSLLSWVF 402 (406)
T ss_pred HHHHHHHhccchHhhheehhcCC-CCChHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 45567777777777778888888 58888888888888888888888777776653
No 254
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=24.25 E-value=2.3e+02 Score=19.02 Aligned_cols=65 Identities=28% Similarity=0.229 Sum_probs=31.6
Q ss_pred HHHHHHhh------cCCCCchhHHHHHHHHhhhhHHHHHHHHHhh-hcccchhHHHHHHHHHHHHHHHHHhhcCCcch
Q psy1755 19 GFELAAEL------TYPEPEGTSSGLLNASAQVFGILFTVVYGQL-FTAFGDIVANIALCLALVLGTLLTLIIPPDLR 89 (103)
Q Consensus 19 ~lEla~E~------tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l-~~~~~~~~~~~~~~~~~~~~~il~~f~k~~~k 89 (103)
.+-+++-+ ..|.+|++. ....+..+=-+| ..+++ ...+.+..+|.+ ...+.+...+|+-.|-+++
T Consensus 43 aLvLavy~LyQ~Yl~~~m~eg~P---~~a~acFflG~f--~ySA~vraqyPeiGSNFf-p~il~l~L~~Wi~~kl~~~ 114 (117)
T PF07226_consen 43 ALVLAVYCLYQRYLNHPMPEGTP---KLALACFFLGLF--GYSAFVRAQYPEIGSNFF-PSILCLILVFWIGYKLGFR 114 (117)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCh---HHHHHHHHHHHH--HHHHHHHHhchhhhhhHH-HHHHHHHHHHHHHHHHhhh
Confidence 66677665 458999876 223333221111 22333 334445455653 3334444555665555443
No 255
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=24.12 E-value=3.4e+02 Score=22.99 Aligned_cols=54 Identities=22% Similarity=0.250 Sum_probs=37.0
Q ss_pred HHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhh
Q psy1755 5 GSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLF 58 (103)
Q Consensus 5 ~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~ 58 (103)
..+.|++.+.......-.+.-.+.+..=++++|+....-.++|.+...+...+.
T Consensus 412 ~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 412 LVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345666666655555555544455555599999999998888888888876654
No 256
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=23.34 E-value=99 Score=16.78 Aligned_cols=22 Identities=9% Similarity=0.131 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC
Q psy1755 65 VANIALCLALVLGTLLTLIIPP 86 (103)
Q Consensus 65 ~~~~~~~~~~~~~~il~~f~k~ 86 (103)
|+-.-.+.+++++.+.+...+.
T Consensus 9 W~sYg~t~l~l~~li~~~~~~~ 30 (45)
T TIGR03141 9 WLAYGITALVLAGLILWSLLDR 30 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555454455555554444433
No 257
>PRK11387 S-methylmethionine transporter; Provisional
Probab=23.04 E-value=3.3e+02 Score=21.57 Aligned_cols=28 Identities=7% Similarity=-0.151 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhcCCcchhhhhhhcCC
Q psy1755 71 CLALVLGTLLTLIIPPDLRRQAAHSDFN 98 (103)
Q Consensus 71 ~~~~~~~~il~~f~k~~~kR~~~e~~~~ 98 (103)
.....++.+...+.|++-||..+|.++.
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T PRK11387 442 IPFVALCYGAYYLTQRLKRNMTQEARHV 469 (471)
T ss_pred HHHHHHHHHHHHHhccccccccHhhhhc
Confidence 3444556666666777777777776654
No 258
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=22.34 E-value=2.4e+02 Score=19.41 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcchhh
Q psy1755 66 ANIALCLALVLGTLLTLIIPPDLRRQ 91 (103)
Q Consensus 66 ~~~~~~~~~~~~~il~~f~k~~~kR~ 91 (103)
...-+.....++..+-.+++-..||.
T Consensus 37 Gt~aL~ls~~l~~mig~yl~~~~rr~ 62 (137)
T PF12270_consen 37 GTVALVLSGGLALMIGFYLRFTARRI 62 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33444444445554444554445554
No 259
>KOG2533|consensus
Probab=21.97 E-value=93 Score=25.49 Aligned_cols=42 Identities=2% Similarity=0.007 Sum_probs=18.6
Q ss_pred hchhHHHHHHHHhhcCCCCchhH-HHHHHHHhhhhHHHHHHHH
Q psy1755 13 TGYLPVGFELAAELTYPEPEGTS-SGLLNASAQVFGILFTVVY 54 (103)
Q Consensus 13 ~~~~Pi~lEla~E~tyPv~e~~s-sgll~~~~qi~g~i~~~i~ 54 (103)
.+..|+.+-...+-+=|.....+ .+....+.+..|++-+.+.
T Consensus 382 ~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~ 424 (495)
T KOG2533|consen 382 IATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLF 424 (495)
T ss_pred HHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhc
Confidence 33444455444554434333333 3333444445555544443
No 260
>PF03821 Mtp: Golgi 4-transmembrane spanning transporter; InterPro: IPR004687 LAPTM4 and 5 are lysosome-associated transmembrane proteins, found in mammals, insects and nematodes. ; GO: 0016021 integral to membrane
Probab=21.70 E-value=3e+02 Score=20.63 Aligned_cols=15 Identities=13% Similarity=0.096 Sum_probs=10.6
Q ss_pred HHHHHHHhhcCCCCc
Q psy1755 18 VGFELAAELTYPEPE 32 (103)
Q Consensus 18 i~lEla~E~tyPv~e 32 (103)
++.|.++|++-|-.-
T Consensus 8 l~i~~~v~v~~~~~~ 22 (233)
T PF03821_consen 8 LLIEHSVEVAHGKDS 22 (233)
T ss_pred HHHHhheeeccCCcc
Confidence 467888888876544
No 261
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=21.65 E-value=2.5e+02 Score=18.53 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhcCC-cchhhhhhhcCC
Q psy1755 72 LALVLGTLLTLIIPP-DLRRQAAHSDFN 98 (103)
Q Consensus 72 ~~~~~~~il~~f~k~-~~kR~~~e~~~~ 98 (103)
.+..++.++.+++-. -.+|.+.-|.++
T Consensus 53 ~~~lig~~l~v~~gg~~l~rlKRGrPe~ 80 (111)
T TIGR03750 53 TGALLGPILVVLIGGKLLARLKRGKPEG 80 (111)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHcCCCch
Confidence 444555555555533 244444444433
No 262
>PHA03240 envelope glycoprotein M; Provisional
Probab=21.25 E-value=1.2e+02 Score=22.78 Aligned_cols=26 Identities=0% Similarity=0.004 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcchhh
Q psy1755 66 ANIALCLALVLGTLLTLIIPPDLRRQ 91 (103)
Q Consensus 66 ~~~~~~~~~~~~~il~~f~k~~~kR~ 91 (103)
..|++....++.++.++|+|-..|=.
T Consensus 213 ~~WIiilIIiIiIIIL~cfKiPQKl~ 238 (258)
T PHA03240 213 IAWIFIAIIIIIVIILFFFKIPQKLF 238 (258)
T ss_pred HhHHHHHHHHHHHHHHHHHhccHHHH
Confidence 45666666667777777777765543
No 263
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=21.23 E-value=1.7e+02 Score=18.82 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=15.2
Q ss_pred HHHHHHHhhhh---HHHHHHHHHhhhcccchh-HHHHHH
Q psy1755 36 SGLLNASAQVF---GILFTVVYGQLFTAFGDI-VANIAL 70 (103)
Q Consensus 36 sgll~~~~qi~---g~i~~~i~~~l~~~~~~~-~~~~~~ 70 (103)
-+++|....+. -.+++-+.+++.+-.|.. ++|..+
T Consensus 32 ~~l~Wl~~~i~~l~~~ifP~~~~~vA~~lGi~~~~n~lf 70 (115)
T PF10066_consen 32 YSLLWLVFSIILLILSIFPNILDWVAKLLGIGRPPNLLF 70 (115)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHCCCchhHHHH
Confidence 34444444433 334444445555444542 344333
No 264
>TIGR03770 anch_rpt_perm anchored repeat-type ABC transporter, permease subunit. This protein family is the permease subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in the adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous permease subunits outside the scope of this family include manganese transporter MntB in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=21.13 E-value=3.6e+02 Score=20.10 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=25.7
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHH
Q psy1755 18 VGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVY 54 (103)
Q Consensus 18 i~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~ 54 (103)
..++...+ ....+++...|++...+--.|.++....
T Consensus 81 ~li~~l~~-~~~~~~d~~igiv~s~~~algvills~~ 116 (270)
T TIGR03770 81 ILIAVFSQ-NRRLKEDSIIGIFFVAAFALGLVIISRV 116 (270)
T ss_pred HHHHHHHH-hcCCchhHHHHHHHHHHHHHHHhhhhcc
Confidence 34455544 6788899999999888887777655543
No 265
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=21.01 E-value=3.2e+02 Score=22.88 Aligned_cols=44 Identities=20% Similarity=0.063 Sum_probs=33.7
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhccc
Q psy1755 18 VGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAF 61 (103)
Q Consensus 18 i~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~ 61 (103)
.+..+|+|+|--..-..=-++....+|+..++-..+..++..+.
T Consensus 168 lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~ 211 (509)
T COG3202 168 LFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHR 211 (509)
T ss_pred HHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 57889999886555566778889999988888777777766543
No 266
>KOG0254|consensus
Probab=20.94 E-value=4.3e+02 Score=20.99 Aligned_cols=48 Identities=15% Similarity=0.295 Sum_probs=33.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755 36 SGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI 83 (103)
Q Consensus 36 sgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f 83 (103)
.+++.....+.+++...+.+.+.|..|.....++......++.++..+
T Consensus 91 ~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~ 138 (513)
T KOG0254|consen 91 QGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIAL 138 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 378888888888888888888888888766555555555555544444
No 267
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=20.91 E-value=1.6e+02 Score=16.01 Aligned_cols=22 Identities=9% Similarity=0.314 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhhcCCcchhhhhhh
Q psy1755 72 LALVLGTLLTLIIPPDLRRQAAHS 95 (103)
Q Consensus 72 ~~~~~~~il~~f~k~~~kR~~~e~ 95 (103)
..++++.+.+.+-|.+ |.+.|+
T Consensus 19 ~~~F~gi~~w~~~~~~--k~~~e~ 40 (49)
T PF05545_consen 19 FVFFIGIVIWAYRPRN--KKRFEE 40 (49)
T ss_pred HHHHHHHHHHHHcccc--hhhHHH
Confidence 3445566666665544 444444
No 268
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=20.70 E-value=3e+02 Score=21.24 Aligned_cols=43 Identities=26% Similarity=0.359 Sum_probs=20.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHH
Q psy1755 36 SGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLL 80 (103)
Q Consensus 36 sgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il 80 (103)
+-++....|+.++...... ..+..+.............++.++
T Consensus 167 ~~~l~~~~~~~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 209 (365)
T PF03125_consen 167 SILLIIFSQIFSIIFSYFV--IFNIIPFIFHVIIFIVSNIISFVL 209 (365)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHhccHHHHHHHHHHHHHHHHHH
Confidence 4456667777776554332 233334333333333444444433
No 269
>PF04276 DUF443: Protein of unknown function (DUF443) ; InterPro: IPR005915 The members of this family share 50 % or greater sequence identity. They are found as eleven tandem genes, arranged head-to-tail, in Staphylococcus aureus (strain COL). Distant full-length homologs are found in a Staphylococcus haemolyticus plasmid and in Bacillus halodurans. The function of these proteins is unknown.
Probab=20.31 E-value=2.5e+02 Score=20.04 Aligned_cols=33 Identities=27% Similarity=0.641 Sum_probs=14.4
Q ss_pred HHHHHHHHHhhhcccc---hhHHHHHHHHHHHHHHH
Q psy1755 47 GILFTVVYGQLFTAFG---DIVANIALCLALVLGTL 79 (103)
Q Consensus 47 g~i~~~i~~~l~~~~~---~~~~~~~~~~~~~~~~i 79 (103)
|+++....+.+.+-.+ +...+++++....++.+
T Consensus 69 ~vli~~llr~~~~~~~i~~~~~i~~~i~~i~~l~v~ 104 (199)
T PF04276_consen 69 SVLISVLLRPYIDYFNIQSSRIINIIICIIVILGVL 104 (199)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Confidence 4444444444333222 22345555554444443
Done!