Query psy1755
Match_columns 103
No_of_seqs 107 out of 353
Neff 6.9
Searched_HMMs 29240
Date Sat Aug 17 01:22:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1755.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1755hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 97.9 6.1E-05 2.1E-09 55.7 8.8 85 3-87 351-436 (451)
2 4aps_A DI-OR tripeptide H+ sym 97.5 0.0005 1.7E-08 51.7 8.8 90 4-94 392-481 (491)
3 2xut_A Proton/peptide symporte 97.3 0.00045 1.5E-08 52.5 6.6 91 4-94 411-512 (524)
4 3o7q_A L-fucose-proton symport 96.9 0.0037 1.2E-07 46.0 7.7 57 4-62 353-409 (438)
5 4aps_A DI-OR tripeptide H+ sym 96.8 0.0072 2.5E-07 45.3 9.0 82 4-85 114-197 (491)
6 2gfp_A EMRD, multidrug resista 96.8 0.0051 1.7E-07 44.5 7.4 84 4-87 94-178 (375)
7 2xut_A Proton/peptide symporte 96.7 0.012 4.3E-07 44.4 9.7 85 4-88 115-202 (524)
8 3o7q_A L-fucose-proton symport 96.5 0.034 1.2E-06 40.7 10.3 55 4-58 123-177 (438)
9 1pw4_A Glycerol-3-phosphate tr 96.1 0.015 5.3E-07 42.6 6.4 86 4-89 125-212 (451)
10 2cfq_A Lactose permease; trans 95.8 0.019 6.6E-07 42.7 6.1 80 8-87 322-402 (417)
11 4gc0_A D-xylose-proton symport 95.6 0.088 3E-06 39.2 9.1 85 8-93 380-472 (491)
12 4gc0_A D-xylose-proton symport 86.5 4.8 0.00017 29.6 8.6 41 6-46 134-174 (491)
13 2gfp_A EMRD, multidrug resista 82.0 0.23 8E-06 35.6 -0.4 56 4-60 297-352 (375)
14 2rdd_B UPF0092 membrane protei 64.4 3.2 0.00011 21.2 1.4 21 77-97 14-34 (37)
15 2knc_B Integrin beta-3; transm 56.0 3.4 0.00012 24.8 0.7 25 72-96 20-52 (79)
16 2klu_A T-cell surface glycopro 49.2 4.3 0.00015 23.9 0.3 24 75-98 23-46 (70)
17 1pi7_A VPU protein, U ORF prot 27.1 31 0.0011 17.6 1.4 24 70-93 11-34 (36)
18 2l2t_A Receptor tyrosine-prote 20.7 50 0.0017 17.5 1.5 10 77-86 27-36 (44)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=97.91 E-value=6.1e-05 Score=55.70 Aligned_cols=85 Identities=15% Similarity=0.110 Sum_probs=65.6
Q ss_pred HHHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhh-hHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHH
Q psy1755 3 LLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQV-FGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLT 81 (103)
Q Consensus 3 v~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi-~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~ 81 (103)
+...+.|++.+...|...-+..|...|...++..|+.+...++ .+.+.+.+.+.+.+..|..+..+...++.+++.++.
T Consensus 351 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 430 (451)
T 1pw4_A 351 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 430 (451)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 3456688888888999899999966555579999999999999 999999999999888775555566666666666665
Q ss_pred hhcCCc
Q psy1755 82 LIIPPD 87 (103)
Q Consensus 82 ~f~k~~ 87 (103)
++.+++
T Consensus 431 ~~~~~~ 436 (451)
T 1pw4_A 431 IVVMIG 436 (451)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 555443
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.52 E-value=0.0005 Score=51.73 Aligned_cols=90 Identities=10% Similarity=-0.016 Sum_probs=58.7
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhh
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLI 83 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f 83 (103)
...+.|+..+...|....+..|...+..-++..|+.+...++++++-+.+.+.+.+. +..+..+....+.+++.++.++
T Consensus 392 ~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 392 SWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVF 470 (491)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777888999999999977666679999999999999999988887766543 3334444455555566555555
Q ss_pred cCCcchhhhhh
Q psy1755 84 IPPDLRRQAAH 94 (103)
Q Consensus 84 ~k~~~kR~~~e 94 (103)
.+++.||...+
T Consensus 471 ~~~~~~~~~~~ 481 (491)
T 4aps_A 471 LSKRIQGLMQG 481 (491)
T ss_dssp C----------
T ss_pred HHHHHHHHHhc
Confidence 55555554433
No 3
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.34 E-value=0.00045 Score=52.48 Aligned_cols=91 Identities=11% Similarity=-0.037 Sum_probs=59.1
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhH-----------HHHHHHH
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIV-----------ANIALCL 72 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~-----------~~~~~~~ 72 (103)
...+.|+..+...|....+..|...|...++..|+.+...++++++-+.+.+.+.+..+..| ..+..++
T Consensus 411 ~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (524)
T 2xut_A 411 PYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAG 490 (524)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHH
Confidence 34567888888899999999998777777999999999999999999999988876432111 1233445
Q ss_pred HHHHHHHHHhhcCCcchhhhhh
Q psy1755 73 ALVLGTLLTLIIPPDLRRQAAH 94 (103)
Q Consensus 73 ~~~~~~il~~f~k~~~kR~~~e 94 (103)
+.+++.++.+++++++||++.+
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~ 512 (524)
T 2xut_A 491 FAILAAIVFALYARSYQMQDHY 512 (524)
T ss_dssp HHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHhccchhh
Confidence 5566666666666666654443
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=96.92 E-value=0.0037 Score=45.96 Aligned_cols=57 Identities=23% Similarity=0.161 Sum_probs=47.1
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG 62 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~ 62 (103)
...+.|++.+...|....++.| .+|...+..+++.. .+++.+.+.+.+.+++.+..|
T Consensus 353 ~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 353 ALTLCSAFMSIQYPTIFSLGIK-NLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHS-SCGGGHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hccccccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 3467899999999999999999 56655677777766 788999999999999988877
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=96.85 E-value=0.0072 Score=45.31 Aligned_cols=82 Identities=12% Similarity=-0.036 Sum_probs=57.8
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCC--chhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHH
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEP--EGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLT 81 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~--e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~ 81 (103)
.-.+.|+..+...|...-+..|...|.. .+...++.....++++.+-+.+.+.+.+..|-.+..+..+...+++.++.
T Consensus 114 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 193 (491)
T 4aps_A 114 SIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVY 193 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3456888899999999999999665544 34466667788888888888888888877665455454444555555555
Q ss_pred hhcC
Q psy1755 82 LIIP 85 (103)
Q Consensus 82 ~f~k 85 (103)
++.+
T Consensus 194 ~~~~ 197 (491)
T 4aps_A 194 YFGG 197 (491)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 5443
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=96.76 E-value=0.0051 Score=44.54 Aligned_cols=84 Identities=15% Similarity=0.023 Sum_probs=59.2
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH-HHh
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTL-LTL 82 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~i-l~~ 82 (103)
...+.|+..+...|...-+..|..-|...+...|+.....++.+.+-+.+.+++.+..+-.+..+.......+..+ ...
T Consensus 94 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (375)
T 2gfp_A 94 ASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMAR 173 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888899999999999776677788999999999999988888888777655533333433444444444 333
Q ss_pred hcCCc
Q psy1755 83 IIPPD 87 (103)
Q Consensus 83 f~k~~ 87 (103)
+.|++
T Consensus 174 ~~~~~ 178 (375)
T 2gfp_A 174 WMPET 178 (375)
T ss_dssp SSCCC
T ss_pred HCccc
Confidence 44444
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=96.74 E-value=0.012 Score=44.45 Aligned_cols=85 Identities=9% Similarity=-0.028 Sum_probs=57.5
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHH---HHHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHH
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGL---LNASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLL 80 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgl---l~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il 80 (103)
...+.|+..+...|...-+..|...|...+...+. .....++++++-+.+.+++.+..|-.+..+....+.+++.++
T Consensus 115 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 194 (524)
T 2xut_A 115 GLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVF 194 (524)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 34567888899999999999996544444444555 888888888888888887776666444444444455555555
Q ss_pred HhhcCCcc
Q psy1755 81 TLIIPPDL 88 (103)
Q Consensus 81 ~~f~k~~~ 88 (103)
+++.++++
T Consensus 195 ~~~~~~~~ 202 (524)
T 2xut_A 195 FWLGRKRY 202 (524)
T ss_dssp HHSSSSSC
T ss_pred HHHhcccc
Confidence 55555443
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=96.49 E-value=0.034 Score=40.67 Aligned_cols=55 Identities=9% Similarity=-0.189 Sum_probs=45.5
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhh
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLF 58 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~ 58 (103)
.-.+.|+..+...|...-+..|...|...+...|+.....++++++-+.+.+.+.
T Consensus 123 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999665555566689999999999998888888777
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=96.06 E-value=0.015 Score=42.63 Aligned_cols=86 Identities=13% Similarity=-0.024 Sum_probs=59.9
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcccc-hhHHHHHHHHHHHHHHH-HH
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFG-DIVANIALCLALVLGTL-LT 81 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~~~-~~~~~~~~~~~~~~~~i-l~ 81 (103)
.-.+.|++.+...|...-+..|..-|..-+...|+.....+++.++-+.+.+++.+..| -.+..+..+.+.++..+ .+
T Consensus 125 ~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~ 204 (451)
T 1pw4_A 125 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 204 (451)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 34678888999999999999996655555788899999999888888888877776665 33444444444444433 44
Q ss_pred hhcCCcch
Q psy1755 82 LIIPPDLR 89 (103)
Q Consensus 82 ~f~k~~~k 89 (103)
++.|++.+
T Consensus 205 ~~~~~~~~ 212 (451)
T 1pw4_A 205 AMMRDTPQ 212 (451)
T ss_dssp HHCCCSST
T ss_pred hhccCCHh
Confidence 55665433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=95.81 E-value=0.019 Score=42.70 Aligned_cols=80 Identities=18% Similarity=0.075 Sum_probs=47.5
Q ss_pred HHHhhhchhHHHHHHHHhhcCCCCchhHHHHH-HHHhhhhHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhcCC
Q psy1755 8 RSFFMTGYLPVGFELAAELTYPEPEGTSSGLL-NASAQVFGILFTVVYGQLFTAFGDIVANIALCLALVLGTLLTLIIPP 86 (103)
Q Consensus 8 ~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll-~~~~qi~g~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~il~~f~k~ 86 (103)
.|++.....+....+..|...+..-++..|+. +..+++.+++-+.+.+++.++.|.....+...++.+++.++.++..+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 322 HMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34444445566677888854333334555663 56667888888888888887666333334445555666655445444
Q ss_pred c
Q psy1755 87 D 87 (103)
Q Consensus 87 ~ 87 (103)
+
T Consensus 402 ~ 402 (417)
T 2cfq_A 402 G 402 (417)
T ss_dssp C
T ss_pred C
Confidence 3
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=95.61 E-value=0.088 Score=39.21 Aligned_cols=85 Identities=14% Similarity=0.155 Sum_probs=55.9
Q ss_pred HHHhhhchhHHHHHHHHhhcCCCCc-hhHHHHHHHHhhhhHHHHHHHHHhhhccc------chhHHHHHHHHHHHHHHHH
Q psy1755 8 RSFFMTGYLPVGFELAAELTYPEPE-GTSSGLLNASAQVFGILFTVVYGQLFTAF------GDIVANIALCLALVLGTLL 80 (103)
Q Consensus 8 ~G~f~~~~~Pi~lEla~E~tyPv~e-~~ssgll~~~~qi~g~i~~~i~~~l~~~~------~~~~~~~~~~~~~~~~~il 80 (103)
.+.+..+..|+..-+.+| .||-.- ++..|+....+++++++...+...+.+.. +..+..++.+++++++.+.
T Consensus 380 ~~~~~~~~~~~~~~~~~E-~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~ 458 (491)
T 4gc0_A 380 VAAFAMSWGPVCWVLLSE-IFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALF 458 (491)
T ss_dssp HHHHHTTTTHHHHHHHHH-SSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHH-hCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 344556677888889999 677554 88889999999999988777765444322 1223445555666666554
Q ss_pred -HhhcCCcchhhhh
Q psy1755 81 -TLIIPPDLRRQAA 93 (103)
Q Consensus 81 -~~f~k~~~kR~~~ 93 (103)
+++++|..+|.-.
T Consensus 459 ~~~~~PETkg~tLe 472 (491)
T 4gc0_A 459 MWKFVPETKGKTLE 472 (491)
T ss_dssp HHHHCCCCTTCCHH
T ss_pred HHheecCCCCCCHH
Confidence 5667776555433
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=86.54 E-value=4.8 Score=29.62 Aligned_cols=41 Identities=10% Similarity=-0.203 Sum_probs=29.6
Q ss_pred HHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhh
Q psy1755 6 SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVF 46 (103)
Q Consensus 6 ~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~ 46 (103)
.+.|+..++..|+..-+..|.+.|..-+...++...+..++
T Consensus 134 ~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g 174 (491)
T 4gc0_A 134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFG 174 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhh
Confidence 46788999999999999999776655566655554444333
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=81.99 E-value=0.23 Score=35.60 Aligned_cols=56 Identities=16% Similarity=0.042 Sum_probs=43.3
Q ss_pred HHHHHHHhhhchhHHHHHHHHhhcCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhcc
Q psy1755 4 LGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTA 60 (103)
Q Consensus 4 ~~~l~G~f~~~~~Pi~lEla~E~tyPv~e~~ssgll~~~~qi~g~i~~~i~~~l~~~ 60 (103)
...+.|+..+...|....+..|.. |...++..|+.+..+++.+.+.+.+.+.+.+.
T Consensus 297 ~~~l~g~~~~~~~~~~~~~~~~~~-p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 352 (375)
T 2gfp_A 297 PAALFFFGAGMLFPLATSGAMEPF-PFLAGTAGALVGGLQNIGSGVLASLSAMLPQT 352 (375)
T ss_dssp HHHHHHHHHHHTSSTTHHHHHTHH-HHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhC-CcccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345678888888899999999964 75558888999999888888777777766543
No 14
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=64.38 E-value=3.2 Score=21.23 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=14.3
Q ss_pred HHHHHhhcCCcchhhhhhhcC
Q psy1755 77 GTLLTLIIPPDLRRQAAHSDF 97 (103)
Q Consensus 77 ~~il~~f~k~~~kR~~~e~~~ 97 (103)
+...++.+|++-||.+..++.
T Consensus 14 ~ifYFl~iRPQ~Kr~K~~~~m 34 (37)
T 2rdd_B 14 LIFYFMILRPQQKRTKEHKKL 34 (37)
T ss_dssp HHHHHHTHHHHHHHHHHHTTG
T ss_pred HHHHHHHhhhHHHHHHHHHHH
Confidence 334455678888888777664
No 15
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=55.95 E-value=3.4 Score=24.82 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhhc--------CCcchhhhhhhc
Q psy1755 72 LALVLGTLLTLII--------PPDLRRQAAHSD 96 (103)
Q Consensus 72 ~~~~~~~il~~f~--------k~~~kR~~~e~~ 96 (103)
+.+++++++++.. |.+|+|-+.|++
T Consensus 20 gilliGllllliwk~~~~i~DrrE~~kFEkE~~ 52 (79)
T 2knc_B 20 AILLIGLAALLIWKLLITIHDRKEFAKFEEERA 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555444444 567777666654
No 16
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=49.24 E-value=4.3 Score=23.89 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=15.5
Q ss_pred HHHHHHHhhcCCcchhhhhhhcCC
Q psy1755 75 VLGTLLTLIIPPDLRRQAAHSDFN 98 (103)
Q Consensus 75 ~~~~il~~f~k~~~kR~~~e~~~~ 98 (103)
+.++..++..|-+-||+++|+-.+
T Consensus 23 ~~glcI~ccvkcrhRrrqAeRMSQ 46 (70)
T 2klu_A 23 FIGLGIFFSVRSRHRRRQAERMSQ 46 (70)
T ss_dssp HHHHHHHHHHHSSCCSSSCTTSSH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 444444556778878888887554
No 17
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=27.13 E-value=31 Score=17.59 Aligned_cols=24 Identities=17% Similarity=0.237 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhhcCCcchhhhh
Q psy1755 70 LCLALVLGTLLTLIIPPDLRRQAA 93 (103)
Q Consensus 70 ~~~~~~~~~il~~f~k~~~kR~~~ 93 (103)
+.+.+.++.+.|.+.-.+|||...
T Consensus 11 livalIiaIVVWtiv~ieYrk~~k 34 (36)
T 1pi7_A 11 LVVAIIIAIVVWSIVIIEGRGGKK 34 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777788888778887654
No 18
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=20.73 E-value=50 Score=17.53 Aligned_cols=10 Identities=10% Similarity=0.301 Sum_probs=4.5
Q ss_pred HHHHHhhcCC
Q psy1755 77 GTLLTLIIPP 86 (103)
Q Consensus 77 ~~il~~f~k~ 86 (103)
....++++|.
T Consensus 27 ~~~~~~~~RR 36 (44)
T 2l2t_A 27 GLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhh
Confidence 3344455544
Done!