RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1755
(103 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.006
Identities = 16/100 (16%), Positives = 28/100 (28%), Gaps = 29/100 (29%)
Query: 20 FELAAELTYPEPEGTSSGLLNASAQ-------VFGILFTVVYGQ------------LFTA 60
P + ++S L A + +FG GQ L+
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG-------GQGNTDDYFEELRDLYQT 179
Query: 61 FGDIVANIALCLALVLGTLLTLIIPPDLRRQAAHSDFNIK 100
+ +V ++ A L L+ D + NI
Sbjct: 180 YHVLVGDLIKFSAETLSELIRT--TLDAEKVFTQG-LNIL 216
Score = 25.8 bits (56), Expect = 3.8
Identities = 18/123 (14%), Positives = 35/123 (28%), Gaps = 41/123 (33%)
Query: 15 YLPVGFELAAELTYPEPEGTSSGLLNASAQV----FGIL----FTVV-------YGQLFT 59
G + L P L S + G++ + V G+L +
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDYL--LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRS 265
Query: 60 AF-------GDIVANIALCLALVLG------------TLLTLIIPPDLRRQAAHSDFNIK 100
+V A+ +A T+L I +R A+ + ++
Sbjct: 266 YLKGATGHSQGLVT--AVAIAETDSWESFFVSVRKAITVLFFI---GVRCYEAYPNTSLP 320
Query: 101 PIV 103
P +
Sbjct: 321 PSI 323
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 30.4 bits (69), Expect = 0.084
Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 10 FFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFT-VVYGQLFTAFG-DIVAN 67
F + G + + A EL + GT++G + G + + G FG D
Sbjct: 358 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFM 417
Query: 68 IALCLALVLGTLLTLIIPPDLRRQ 91
+ + +++ LL +++ + RR
Sbjct: 418 VMIGGSILAVILLIVVMIGEKRRH 441
>3ky8_A Putative riboflavin biosynthesis protein; structural genomic center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE UNL; 2.12A {Shewanella loihica}
Length = 197
Score = 26.9 bits (60), Expect = 1.1
Identities = 6/27 (22%), Positives = 8/27 (29%)
Query: 3 LLGSGRSFFMTGYLPVGFELAAELTYP 29
LLG G F + F +
Sbjct: 158 LLGGGVPLFGELESSLSFNVIKSEVVL 184
>2gd9_A Hypothetical protein YYAP; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, oxidoreductase; 2.30A {Bacillus subtilis}
Length = 189
Score = 26.2 bits (58), Expect = 1.8
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 3 LLGSGRSFFMTGYLPVGFELAAELTYP 29
+LG G+ F+ + ++ T+
Sbjct: 151 VLGEGKPLFIDVKQRINLKMVNTRTFS 177
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase,
enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos}
SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A*
1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A
1k62_A
Length = 468
Score = 26.0 bits (58), Expect = 2.2
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 63 DIVANIALCLALVLGTLLTLIIPPDLRRQAAHSDFN 98
D+V + L + G + TL I + +A +
Sbjct: 336 DVVDTLTAVLQVATGVISTLQISKENMEKALTPEML 371
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase;
2.44A {Escherichia coli} SCOP: a.127.1.1
Length = 457
Score = 25.6 bits (57), Expect = 3.0
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 63 DIVANIALCLALVLGTLLTLIIPPDLRRQAAHSDF 97
D + CL + L + + ++AA +
Sbjct: 330 DALDTWLDCLHMAALVLDGIQVKRPRCQEAAQQGY 364
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase;
chimerical protein, P-loop protein, capsule
biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus
aureus} PDB: 2ved_A*
Length = 271
Score = 25.7 bits (57), Expect = 3.0
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 64 IVANIALCLALVLGTLLTLIIPPDLRRQAAHSDFNIK 100
I AN+A+ A G TLI+ D+R+ H FN+
Sbjct: 99 IAANLAVAYAQ-AGYK-TLIVDGDMRKPTQHYIFNLP 133
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics,
PSI, protein structure initiative, NYSG oxidoreductase;
2.20A {Escherichia coli}
Length = 483
Score = 25.8 bits (57), Expect = 3.1
Identities = 10/83 (12%), Positives = 25/83 (30%), Gaps = 2/83 (2%)
Query: 3 LLG--SGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTA 60
LG SG + ++ + ++ +L G+ A
Sbjct: 273 RLGKKSGLGVYDWRAEREAVVGLEAVSDSFSPMKVEKKSDGVTEIDDVLLIETQGETAQA 332
Query: 61 FGDIVANIALCLALVLGTLLTLI 83
+A + + + G ++T+
Sbjct: 333 LAIRLARPVVVIDKMAGKVVTIA 355
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A
{Thermus thermophilus}
Length = 462
Score = 25.6 bits (57), Expect = 3.8
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 63 DIVANIALCLALVLGTLLTLIIPPDLRRQAAHSDF 97
D +A L L+ L L + +AA +
Sbjct: 333 DALATYRDSLRLLAALLPGLKWRRERMWRAAEGGY 367
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine
kinase domain, signaling protein, transferase, inner
membrane, membrane; 2.50A {Escherichia coli}
Length = 299
Score = 25.0 bits (55), Expect = 4.6
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 68 IALCLALVLGTL--LTLIIPPDLRRQAAHSDFNIKP 101
++ LA V+ L I DLRR +H+ F +
Sbjct: 121 VSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSN 156
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding
domain, walker A motif, B protein kinase,
oligomerization; HET: ADP; 3.20A {Escherichia coli}
Length = 286
Score = 25.0 bits (55), Expect = 5.5
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 64 IVANIALCLALVLGTLLTLIIPPDLRRQAAHSDFNIKP 101
+ AN+A ++ L+I D+R+ H
Sbjct: 109 VCANLAAVISQ-TN-KRVLLIDCDMRKGYTHELLGTNN 144
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus
abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Length = 262
Score = 24.9 bits (55), Expect = 5.6
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 11 FMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLFTAFGDIVANIAL 70
F TGY E E+ PEG ++ L A+ G+ +V G GD++ N A+
Sbjct: 44 FDTGYNFETREEVFEIAQKIPEGETTTFLMDVARDTGV--YIVAG-TAEKDGDVLYNSAV 100
Query: 71 CL 72
+
Sbjct: 101 VV 102
>3jtw_A Dihydrofolate reductase; YP_805003.1, structural GE joint center
for structural genomics, JCSG, protein structu
initiative; 1.90A {Pediococcus pentosaceus atcc 25745}
Length = 178
Score = 24.6 bits (54), Expect = 6.6
Identities = 7/26 (26%), Positives = 7/26 (26%)
Query: 3 LLGSGRSFFMTGYLPVGFELAAELTY 28
LGSG F V L
Sbjct: 142 FLGSGIRLFDRLEEQVPVRLIDVYQK 167
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.143 0.416
Gapped
Lambda K H
0.267 0.0537 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,575,680
Number of extensions: 82967
Number of successful extensions: 214
Number of sequences better than 10.0: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 21
Length of query: 103
Length of database: 6,701,793
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,803,165
Effective search space: 168110775
Effective search space used: 168110775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.9 bits)