RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1755
         (103 letters)



>d1xdna_ d.142.2.4 (A:) RNA editing ligase MP52 {Trypanosoma brucei
           [TaxId: 5691]}
          Length = 265

 Score = 23.8 bits (51), Expect = 5.1
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 8/57 (14%)

Query: 2   SLLGSGRSFFMTGYLPVGFELAAELTYPEPEGTSSGLLNASAQVFGILFTVVYGQLF 58
            ++    +FF  GY  +  E  A++         + LL     +  +   V+ G+LF
Sbjct: 62  GIMDPNENFF--GYHILIDEFTAQIR------ILNDLLKQKYGLSRVGRLVLNGELF 110


>d1u60a_ e.3.1.2 (A:) Probable glutaminase YbaS {Escherichia coli
          [TaxId: 562]}
          Length = 309

 Score = 23.2 bits (50), Expect = 8.3
 Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 10/46 (21%)

Query: 38 LLNASAQVFGILFTVVYGQLFTAFGD---------IVANIALCLAL 74
          L N   Q+  +      G +++A GD         I     L LAL
Sbjct: 32 LANVPGQLAAVAIVTCDGNVYSA-GDSDYRFALESISKVCTLALAL 76


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.143    0.416 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 364,109
Number of extensions: 13570
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 8
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.1 bits)