BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17551
         (73 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
           With A Peptide Substrate
 pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
           With A Peptide Substrate
 pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
           With A Peptide Substrate
 pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
           With A Peptide Substrate
 pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
           With A Peptide Substrate
 pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
           With A Peptide Substrate
 pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
           Human O- Glcnac Transferase
 pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
           Human O- Glcnac Transferase
 pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
           Glycopeptide
 pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
           Glycopeptide
 pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
           Glycopeptide
 pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
           Glycopeptide
 pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
           Udp-5sglcnac And Substrate Peptide
 pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
           Udp-5sglcnac And Substrate Peptide
 pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
           Udp-5sglcnac And Substrate Peptide
 pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
           Udp-5sglcnac And Substrate Peptide
 pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
           With Udp And A Glycopeptide
 pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
           With Udp And A Glycopeptide
 pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-5sglcnac And A Peptide Substrate
 pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-5sglcnac And A Peptide Substrate
 pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
           And A Thioglycopeptide
 pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
           And A Thioglycopeptide
 pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-Glcnac
 pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-Glcnac
 pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-Glcnac
 pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-Glcnac
 pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-5sglcnac
 pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-5sglcnac
 pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-5sglcnac
 pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-5sglcnac
          Length = 723

 Score = 25.8 bits (55), Expect = 6.3,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 8   LEISKKNSMAYDDVLLKLGEFGRYQKRI 35
           LE+  KN   Y+D+ +KLG    Y K++
Sbjct: 648 LELIAKNRQEYEDIAVKLGTDLEYLKKV 675


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.330    0.143    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,841,473
Number of Sequences: 62578
Number of extensions: 56704
Number of successful extensions: 164
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 163
Number of HSP's gapped (non-prelim): 1
length of query: 73
length of database: 14,973,337
effective HSP length: 43
effective length of query: 30
effective length of database: 12,282,483
effective search space: 368474490
effective search space used: 368474490
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 45 (21.9 bits)