Query psy17551
Match_columns 73
No_of_seqs 103 out of 805
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 16:28:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17551.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17551hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00898 2A0119 cation transp 99.3 1E-11 2.3E-16 89.1 5.8 43 26-68 1-43 (505)
2 KOG0255|consensus 97.7 0.00014 3E-09 53.0 5.9 49 17-65 2-50 (521)
3 KOG0253|consensus 89.2 0.5 1.1E-05 35.9 3.3 43 14-57 59-101 (528)
4 TIGR01299 synapt_SV2 synaptic 86.6 1.9 4.2E-05 34.1 5.3 40 16-56 150-189 (742)
5 TIGR00887 2A0109 phosphate:H+ 76.3 6.1 0.00013 28.8 4.5 37 21-58 4-40 (502)
6 PRK00720 tatA twin arginine tr 69.5 6.4 0.00014 23.0 2.6 17 25-41 1-17 (78)
7 PRK02958 tatA twin arginine tr 68.0 7.2 0.00016 22.5 2.6 17 25-41 1-17 (73)
8 PRK04561 tatA twin arginine tr 61.5 11 0.00025 21.9 2.6 17 25-41 1-17 (75)
9 PRK00442 tatA twin arginine tr 59.1 12 0.00026 22.5 2.6 17 25-41 1-17 (92)
10 KOG3722|consensus 56.8 6.2 0.00013 30.1 1.2 47 24-70 464-522 (538)
11 PRK04598 tatA twin arginine tr 56.8 15 0.00033 21.6 2.6 17 25-41 1-17 (81)
12 PRK01833 tatA twin arginine tr 56.2 16 0.00035 21.1 2.6 17 25-41 1-17 (74)
13 PF08802 CytB6-F_Fe-S: Cytochr 55.7 27 0.00059 17.8 3.8 29 25-53 3-31 (39)
14 PF06528 Phage_P2_GpE: Phage P 52.3 5.8 0.00013 20.2 0.4 23 1-23 1-25 (39)
15 PRK03554 tatA twin arginine tr 51.5 20 0.00044 21.5 2.6 17 25-41 1-17 (89)
16 COG3114 CcmD Heme exporter pro 45.3 56 0.0012 18.6 3.7 27 24-50 11-37 (67)
17 PRK03625 tatE twin arginine tr 42.9 31 0.00067 19.5 2.4 17 25-41 1-17 (67)
18 PRK01614 tatE twin arginine tr 41.8 35 0.00076 20.3 2.6 16 26-41 2-17 (85)
19 PF14837 INTS5_N: Integrator c 37.3 51 0.0011 22.6 3.2 37 4-40 169-205 (213)
20 COG1826 TatA Sec-independent p 34.6 46 0.001 19.6 2.4 17 26-42 2-18 (94)
21 PF12382 Peptidase_A2E: Retrot 32.3 22 0.00047 22.2 0.7 18 52-69 34-51 (137)
22 PF15576 DUF4661: Domain of un 31.3 1.3E+02 0.0028 20.9 4.4 47 18-64 190-236 (253)
23 KOG4452|consensus 27.3 1.2E+02 0.0026 17.5 3.2 26 28-53 15-40 (79)
24 PF03875 Statherin: Statherin; 23.0 25 0.00055 18.0 -0.1 9 25-33 16-24 (42)
25 COG2442 Uncharacterized conser 21.6 1.8E+02 0.0039 16.8 3.6 35 6-41 35-69 (79)
26 PRK00575 tatA twin arginine tr 21.2 1.1E+02 0.0024 18.4 2.3 17 25-41 1-17 (92)
27 PF09781 NDUF_B5: NADH:ubiquin 21.1 1.6E+02 0.0035 19.9 3.4 21 37-57 71-92 (187)
28 cd01053 AOX Alternative oxidas 21.0 2.4E+02 0.0052 18.7 4.1 34 4-38 42-75 (168)
No 1
>TIGR00898 2A0119 cation transport protein.
Probab=99.26 E-value=1e-11 Score=89.06 Aligned_cols=43 Identities=37% Similarity=0.593 Sum_probs=41.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCC
Q psy17551 26 GEFGRYQKRIYFLLCLPALSCAFHKLIGVFLNLKTQYRSFQSF 68 (73)
Q Consensus 26 G~fG~yQ~~~~~l~~l~~~~~a~~~l~~vF~~~~P~h~C~~p~ 68 (73)
|+|||||++++++++++.++.++|.++++|++++|+|||++|.
T Consensus 1 g~~g~~q~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~c~~~~ 43 (505)
T TIGR00898 1 GEFGPFQRRTFLLLALPIALLAFHFVLIVFLGATPEHHCRLPD 43 (505)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCCC
Confidence 8999999999999999999999999999999999999999883
No 2
>KOG0255|consensus
Probab=97.66 E-value=0.00014 Score=53.00 Aligned_cols=49 Identities=35% Similarity=0.672 Sum_probs=45.6
Q ss_pred CHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Q psy17551 17 AYDDVLLKLGEFGRYQKRIYFLLCLPALSCAFHKLIGVFLNLKTQYRSF 65 (73)
Q Consensus 17 ~fD~il~~vG~fG~yQ~~~~~l~~l~~~~~a~~~l~~vF~~~~P~h~C~ 65 (73)
++|++++++|++|+||+...++.....++.+.|....+|.+..|+++|.
T Consensus 2 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 50 (521)
T KOG0255|consen 2 DLDEILSSVGDFGRYQKLLLLLLGLPSIFSALHSFAQIFLAFVPDHHCT 50 (521)
T ss_pred chHHHHHHhcCCcHHHHHHHHHHHHHHhHHHHHHHHHHhhccCCCchhh
Confidence 5788889999999999999999999999999999999999999997774
No 3
>KOG0253|consensus
Probab=89.19 E-value=0.5 Score=35.88 Aligned_cols=43 Identities=21% Similarity=0.451 Sum_probs=35.1
Q ss_pred cCCCHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17551 14 NSMAYDDVLLKLGEFGRYQKRIYFLLCLPALSCAFHKLIGVFLN 57 (73)
Q Consensus 14 ~~~~fD~il~~vG~fG~yQ~~~~~l~~l~~~~~a~~~l~~vF~~ 57 (73)
+.-..||.++.+| |||||+..+++....++..++..+-.-++.
T Consensus 59 k~~tv~ea~~aig-fgrfq~yl~~~ag~gwmad~m~~m~~s~i~ 101 (528)
T KOG0253|consen 59 KSFTVDEAMNAIG-FGRFQWYLFFVAGMGWMADAMEMMLLSLIL 101 (528)
T ss_pred ceeeehhhhhhcC-cccchhhHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4466788999999 999999999999999888777766666554
No 4
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=86.56 E-value=1.9 Score=34.07 Aligned_cols=40 Identities=23% Similarity=0.500 Sum_probs=31.8
Q ss_pred CCHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17551 16 MAYDDVLLKLGEFGRYQKRIYFLLCLPALSCAFHKLIGVFL 56 (73)
Q Consensus 16 ~~fD~il~~vG~fG~yQ~~~~~l~~l~~~~~a~~~l~~vF~ 56 (73)
.++|++++++| +|++|+++++++++..+..++......++
T Consensus 150 ~~~d~~l~~~~-~~~~~~~l~~i~~l~~~~~g~d~~~is~i 189 (742)
T TIGR01299 150 QQYELIIQECG-HGRFQWALFFVLGLALMADGVEVFVVGFV 189 (742)
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999987 89999999988888888777755544444
No 5
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=76.31 E-value=6.1 Score=28.81 Aligned_cols=37 Identities=8% Similarity=0.017 Sum_probs=28.5
Q ss_pred HHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy17551 21 VLLKLGEFGRYQKRIYFLLCLPALSCAFHKLIGVFLNL 58 (73)
Q Consensus 21 il~~vG~fG~yQ~~~~~l~~l~~~~~a~~~l~~vF~~~ 58 (73)
.+++.| ||++|+++++++++..+..++......++..
T Consensus 4 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~ 40 (502)
T TIGR00887 4 EADTAP-FGWQHFRAIVIAGVGFFTDSYDLFCISLVTK 40 (502)
T ss_pred hhhccc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 9999999999999998888887766655543
No 6
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=69.52 E-value=6.4 Score=23.02 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=12.2
Q ss_pred cCCCchHHHHHHHHHHH
Q psy17551 25 LGEFGRYQKRIYFLLCL 41 (73)
Q Consensus 25 vG~fG~yQ~~~~~l~~l 41 (73)
+|++|.|++++.+++.+
T Consensus 1 Mgg~g~~ellIIlvIvl 17 (78)
T PRK00720 1 MGSFSIWHWLIVLAVVL 17 (78)
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 47899999777665444
No 7
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=67.95 E-value=7.2 Score=22.50 Aligned_cols=17 Identities=18% Similarity=0.501 Sum_probs=12.5
Q ss_pred cCCCchHHHHHHHHHHH
Q psy17551 25 LGEFGRYQKRIYFLLCL 41 (73)
Q Consensus 25 vG~fG~yQ~~~~~l~~l 41 (73)
+|++|.|++++.+++.+
T Consensus 1 mg~~g~~elliIl~Ivl 17 (73)
T PRK02958 1 MGSFSIWHWLIVLVIVV 17 (73)
T ss_pred CCCccHHHHHHHHHHHH
Confidence 47899999877765544
No 8
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=61.53 E-value=11 Score=21.87 Aligned_cols=17 Identities=18% Similarity=0.526 Sum_probs=12.1
Q ss_pred cCCCchHHHHHHHHHHH
Q psy17551 25 LGEFGRYQKRIYFLLCL 41 (73)
Q Consensus 25 vG~fG~yQ~~~~~l~~l 41 (73)
+|++|.|++++.+++.+
T Consensus 1 Mgg~s~~ellIIlvIvl 17 (75)
T PRK04561 1 MGSFSIWHWLVVLVIVL 17 (75)
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 47899999777665443
No 9
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=59.11 E-value=12 Score=22.52 Aligned_cols=17 Identities=12% Similarity=0.300 Sum_probs=12.4
Q ss_pred cCCCchHHHHHHHHHHH
Q psy17551 25 LGEFGRYQKRIYFLLCL 41 (73)
Q Consensus 25 vG~fG~yQ~~~~~l~~l 41 (73)
+|.+|.+++++.+++.+
T Consensus 1 Mg~~g~~elliIlvIvl 17 (92)
T PRK00442 1 MGIFDWKHWIVILVVVV 17 (92)
T ss_pred CCCccHHHHHHHHHHHH
Confidence 48899999877665443
No 10
>KOG3722|consensus
Probab=56.83 E-value=6.2 Score=30.11 Aligned_cols=47 Identities=23% Similarity=0.164 Sum_probs=25.0
Q ss_pred HcCCCchHHHHHHH----HHHHHHHHHHHHHHHHHHhcCCC--------CccccCCCCc
Q psy17551 24 KLGEFGRYQKRIYF----LLCLPALSCAFHKLIGVFLNLKT--------QYRSFQSFEV 70 (73)
Q Consensus 24 ~vG~fG~yQ~~~~~----l~~l~~~~~a~~~l~~vF~~~~P--------~h~C~~p~e~ 70 (73)
-+|+|||+||+=-+ +..+......--.+.--|++++- .|+|..|.+.
T Consensus 464 LLGdfgrfnWLGnFyIVl~YNllFai~TtlcLvnkfTaavRrEL~kalgl~rl~lpn~s 522 (538)
T KOG3722|consen 464 LLGDFGRFNWLGNFYIVLLYNLLFAILTTLCLVNKFTAAVRRELFKALGLHRLHLPNTS 522 (538)
T ss_pred hccccccceeccceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcC
Confidence 68999999976422 11111111222234445665544 3888877543
No 11
>PRK04598 tatA twin arginine translocase protein A; Provisional
Probab=56.77 E-value=15 Score=21.58 Aligned_cols=17 Identities=18% Similarity=0.344 Sum_probs=11.8
Q ss_pred cCCCchHHHHHHHHHHH
Q psy17551 25 LGEFGRYQKRIYFLLCL 41 (73)
Q Consensus 25 vG~fG~yQ~~~~~l~~l 41 (73)
+|++|.+++++.+++.+
T Consensus 1 m~glg~~elliIlvivl 17 (81)
T PRK04598 1 MGGISIWQLLIIAVIVV 17 (81)
T ss_pred CCCccHHHHHHHHHHHH
Confidence 47799999777654433
No 12
>PRK01833 tatA twin arginine translocase protein A; Provisional
Probab=56.21 E-value=16 Score=21.11 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=12.1
Q ss_pred cCCCchHHHHHHHHHHH
Q psy17551 25 LGEFGRYQKRIYFLLCL 41 (73)
Q Consensus 25 vG~fG~yQ~~~~~l~~l 41 (73)
+|++|.|++++.+++.+
T Consensus 1 m~g~g~~elliIl~i~l 17 (74)
T PRK01833 1 MGGISIWQLLIIVAIIV 17 (74)
T ss_pred CCCccHHHHHHHHHHHH
Confidence 47799999777665443
No 13
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=55.75 E-value=27 Score=17.78 Aligned_cols=29 Identities=14% Similarity=-0.102 Sum_probs=18.7
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy17551 25 LGEFGRYQKRIYFLLCLPALSCAFHKLIG 53 (73)
Q Consensus 25 vG~fG~yQ~~~~~l~~l~~~~~a~~~l~~ 53 (73)
+-++||.|.+.+++........+...+-+
T Consensus 3 VPdm~RR~lmN~ll~Gava~~a~~~lyP~ 31 (39)
T PF08802_consen 3 VPDMSRRQLMNLLLGGAVAVPAGGMLYPY 31 (39)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHhhHHHHHHHHhhhh
Confidence 45789999999988877766655444433
No 14
>PF06528 Phage_P2_GpE: Phage P2 GpE; InterPro: IPR009493 This entry is represented by Burkholderia phage phiE202, Gp27. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins which are closely related to the GpE tail protein from Phage P2.
Probab=52.27 E-value=5.8 Score=20.25 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=16.2
Q ss_pred CcchhhHhh--hccccCCCHHHHHH
Q psy17551 1 MADISVILE--ISKKNSMAYDDVLL 23 (73)
Q Consensus 1 ~~~~~~~~~--~~~~~~~~fD~il~ 23 (73)
||||+..-- .+.-..|+++|++.
T Consensus 1 MADiA~~FhW~Pse~~~m~l~El~~ 25 (39)
T PF06528_consen 1 MADIAWVFHWPPSEMDAMSLDELMD 25 (39)
T ss_pred CcceeeecCCCHHHHhcCCHHHHHH
Confidence 788887765 33336788888764
No 15
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=51.48 E-value=20 Score=21.45 Aligned_cols=17 Identities=18% Similarity=0.344 Sum_probs=11.8
Q ss_pred cCCCchHHHHHHHHHHH
Q psy17551 25 LGEFGRYQKRIYFLLCL 41 (73)
Q Consensus 25 vG~fG~yQ~~~~~l~~l 41 (73)
+|++|.+++++.+++.+
T Consensus 1 M~glG~~eLlIIlvIvL 17 (89)
T PRK03554 1 MGGISIWQLLIIAVIVV 17 (89)
T ss_pred CCCccHHHHHHHHHHHH
Confidence 46789999777655444
No 16
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=45.35 E-value=56 Score=18.56 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=19.5
Q ss_pred HcCCCchHHHHHHHHHHHHHHHHHHHH
Q psy17551 24 KLGEFGRYQKRIYFLLCLPALSCAFHK 50 (73)
Q Consensus 24 ~vG~fG~yQ~~~~~l~~l~~~~~a~~~ 50 (73)
.+|+||.|=+..+.+..++....-.|.
T Consensus 11 aMGgyafyVWlA~~~tll~l~~l~v~s 37 (67)
T COG3114 11 AMGGYAFYVWLAVGMTLLPLAVLVVHS 37 (67)
T ss_pred HccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999888877766655444443
No 17
>PRK03625 tatE twin arginine translocase protein E; Validated
Probab=42.88 E-value=31 Score=19.50 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=12.2
Q ss_pred cCCCchHHHHHHHHHHH
Q psy17551 25 LGEFGRYQKRIYFLLCL 41 (73)
Q Consensus 25 vG~fG~yQ~~~~~l~~l 41 (73)
+|++|.+++++.+++.+
T Consensus 1 M~~ig~~elliIlvI~l 17 (67)
T PRK03625 1 MGEISITKLLVVAALVV 17 (67)
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 36789999877665554
No 18
>PRK01614 tatE twin arginine translocase protein A; Validated
Probab=41.84 E-value=35 Score=20.28 Aligned_cols=16 Identities=6% Similarity=-0.039 Sum_probs=11.3
Q ss_pred CCCchHHHHHHHHHHH
Q psy17551 26 GEFGRYQKRIYFLLCL 41 (73)
Q Consensus 26 G~fG~yQ~~~~~l~~l 41 (73)
+++|.+++++.+++.+
T Consensus 2 ~GlG~~ELLIIlvIvL 17 (85)
T PRK01614 2 EGLSITKLLVVGILIV 17 (85)
T ss_pred CCccHHHHHHHHHHHH
Confidence 6789999777655444
No 19
>PF14837 INTS5_N: Integrator complex subunit 5 N-terminus
Probab=37.28 E-value=51 Score=22.61 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=29.7
Q ss_pred hhhHhhhccccCCCHHHHHHHcCCCchHHHHHHHHHH
Q psy17551 4 ISVILEISKKNSMAYDDVLLKLGEFGRYQKRIYFLLC 40 (73)
Q Consensus 4 ~~~~~~~~~~~~~~fD~il~~vG~fG~yQ~~~~~l~~ 40 (73)
+..+++.|-.+...||.|+.++|..=++.++.-++-+
T Consensus 169 v~~Ll~tsv~hsphFDWVvahigs~FP~tIis~lL~~ 205 (213)
T PF14837_consen 169 VDALLDTSVQHSPHFDWVVAHIGSCFPGTIISRLLSC 205 (213)
T ss_pred HHHHHHHHhccCCchhhhHHHHHhhCcHHHHHHHHHH
Confidence 4567888878999999999999988888776666544
No 20
>COG1826 TatA Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]
Probab=34.61 E-value=46 Score=19.56 Aligned_cols=17 Identities=18% Similarity=0.131 Sum_probs=11.9
Q ss_pred CCCchHHHHHHHHHHHH
Q psy17551 26 GEFGRYQKRIYFLLCLP 42 (73)
Q Consensus 26 G~fG~yQ~~~~~l~~l~ 42 (73)
+.+|++++++.+++.+.
T Consensus 2 ~~ig~~elliIlvV~ll 18 (94)
T COG1826 2 FGIGWSELLIILVVALL 18 (94)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 34899998877655543
No 21
>PF12382 Peptidase_A2E: Retrotransposon peptidase; InterPro: IPR024648 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This entry represents a small family of fungal retroviral aspartyl peptidases.
Probab=32.33 E-value=22 Score=22.17 Aligned_cols=18 Identities=6% Similarity=-0.106 Sum_probs=14.2
Q ss_pred HHHHhcCCCCccccCCCC
Q psy17551 52 IGVFLNLKTQYRSFQSFE 69 (73)
Q Consensus 52 ~~vF~~~~P~h~C~~p~e 69 (73)
-+|.-+.-|++.|.+||.
T Consensus 34 emvlqa~lp~fkcsipcl 51 (137)
T PF12382_consen 34 EMVLQAKLPDFKCSIPCL 51 (137)
T ss_pred HhhhhhhCCCccccceeE
Confidence 356677889999999963
No 22
>PF15576 DUF4661: Domain of unknown function (DUF4661)
Probab=31.35 E-value=1.3e+02 Score=20.90 Aligned_cols=47 Identities=17% Similarity=0.165 Sum_probs=38.1
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Q psy17551 18 YDDVLLKLGEFGRYQKRIYFLLCLPALSCAFHKLIGVFLNLKTQYRS 64 (73)
Q Consensus 18 fD~il~~vG~fG~yQ~~~~~l~~l~~~~~a~~~l~~vF~~~~P~h~C 64 (73)
..-+++.+|--|+--.|+--++++.....|+|.+.....+..+-+-|
T Consensus 190 lr~~LdaLGlrGPlgLWLHGllsFl~alhglha~L~lltahp~hFAc 236 (253)
T PF15576_consen 190 LRAALDALGLRGPLGLWLHGLLSFLAALHGLHAVLSLLTAHPLHFAC 236 (253)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 34577888888888888888888888888999988888887766667
No 23
>KOG4452|consensus
Probab=27.29 E-value=1.2e+02 Score=17.46 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=16.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH
Q psy17551 28 FGRYQKRIYFLLCLPALSCAFHKLIG 53 (73)
Q Consensus 28 fG~yQ~~~~~l~~l~~~~~a~~~l~~ 53 (73)
+-.|--+..+++.++.++.||..+..
T Consensus 15 pAvfPhLttvLl~iG~fftAwFf~~~ 40 (79)
T KOG4452|consen 15 PAVFPHLTTVLLGIGLFFTAWFFMIQ 40 (79)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhee
Confidence 33455556677777777777765443
No 24
>PF03875 Statherin: Statherin; InterPro: IPR005575 Statherin functions biologically to inhibit the nucleation and growth of calcium phosphate minerals. The N terminus of statherin is highly charged, the glutamic acids of which have been shown to be important in the recognition hydroxyapatite [].
Probab=23.02 E-value=25 Score=17.95 Aligned_cols=9 Identities=44% Similarity=1.025 Sum_probs=5.9
Q ss_pred cCCCchHHH
Q psy17551 25 LGEFGRYQK 33 (73)
Q Consensus 25 vG~fG~yQ~ 33 (73)
-|.||+||-
T Consensus 16 ~grygpyqp 24 (42)
T PF03875_consen 16 YGRYGPYQP 24 (42)
T ss_pred ccccCCcCC
Confidence 355788873
No 25
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=21.57 E-value=1.8e+02 Score=16.76 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=26.7
Q ss_pred hHhhhccccCCCHHHHHHHcCCCchHHHHHHHHHHH
Q psy17551 6 VILEISKKNSMAYDDVLLKLGEFGRYQKRIYFLLCL 41 (73)
Q Consensus 6 ~~~~~~~~~~~~fD~il~~vG~fG~yQ~~~~~l~~l 41 (73)
.+++... ...+.||+++..++..+-|+...+-...
T Consensus 35 ~Il~~l~-~G~s~eeil~dyp~Lt~~dI~aal~ya~ 69 (79)
T COG2442 35 DILEMLA-AGESIEEILADYPDLTLEDIRAALRYAA 69 (79)
T ss_pred HHHHHHH-CCCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 4555444 6789999999999999999877665443
No 26
>PRK00575 tatA twin arginine translocase protein A; Provisional
Probab=21.16 E-value=1.1e+02 Score=18.39 Aligned_cols=17 Identities=12% Similarity=0.401 Sum_probs=11.0
Q ss_pred cCCCchHHHHHHHHHHH
Q psy17551 25 LGEFGRYQKRIYFLLCL 41 (73)
Q Consensus 25 vG~fG~yQ~~~~~l~~l 41 (73)
+|+.|.+++++.+++.+
T Consensus 1 m~~iG~~ElliIlvi~L 17 (92)
T PRK00575 1 MGSLSPWHWAILAVVVI 17 (92)
T ss_pred CCcccHHHHHHHHHHHH
Confidence 36788998766554433
No 27
>PF09781 NDUF_B5: NADH:ubiquinone oxidoreductase, NDUFB5/SGDH subunit; InterPro: IPR019173 Members of this family mediate the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone, the reaction that occurs being: NADH + ubiquinone = NAD(+) + ubiquinol [, ].
Probab=21.09 E-value=1.6e+02 Score=19.91 Aligned_cols=21 Identities=19% Similarity=0.471 Sum_probs=12.1
Q ss_pred HHHHHHHHHH-HHHHHHHHHhc
Q psy17551 37 FLLCLPALSC-AFHKLIGVFLN 57 (73)
Q Consensus 37 ~l~~l~~~~~-a~~~l~~vF~~ 57 (73)
+.+.+..++. .+..+..||++
T Consensus 71 FY~lLg~IPv~~~it~vNvFiG 92 (187)
T PF09781_consen 71 FYILLGGIPVAIIITYVNVFIG 92 (187)
T ss_pred HHHHHHHHHHHHHHHHhheeee
Confidence 3444566654 35566677765
No 28
>cd01053 AOX Alternative oxidase, ferritin-like diiron-binding domain. Alternative oxidase (AOX) is a mitochondrial ubiquinol oxidase found in plants and some fungi and protists. AOX is a member of the ferritin-like diiron-carboxylate superfamily. The plant mitochondrial protein alternative oxidase catalyses dioxygen dependent ubiquinol oxidation to yield ubiquinone and water. AOX is a cyanide-resistant, salicylhydroxamic acid-sensitive oxidase that transfers electrons from ubiquinol to oxygen, bypassing the cytochrome chain. AOX has been proposed to contain a hydroxo-bridged diiron center within a four-helix bundle and a proximal redox-active tyrosine residue. AOX is proposed to be peripherally associated with the matrix side of the inner mitochondrial membrane. Fungal and protozoan AOXs generally exist as monomers. In plants, AOX is dimeric. Pyruvate is an allosteric activator of plant AOX involved in the reversible inactivation of the enzyme though the formation of an intermolecular
Probab=20.98 E-value=2.4e+02 Score=18.70 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=24.6
Q ss_pred hhhHhhhccccCCCHHHHHHHcCCCchHHHHHHHH
Q psy17551 4 ISVILEISKKNSMAYDDVLLKLGEFGRYQKRIYFL 38 (73)
Q Consensus 4 ~~~~~~~~~~~~~~fD~il~~vG~fG~yQ~~~~~l 38 (73)
|+.+++-+.|+.+.+. ++.++|+-|+|..+.++.
T Consensus 42 i~~lleEaeNErmHLl-tf~~l~~p~~~~r~~v~~ 75 (168)
T cd01053 42 IKTLLEEAENERMHLL-IFEELGGPGWWFRRFVAQ 75 (168)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhcCCcHHHHHHHHH
Confidence 5677777777777766 455888899998776553
Done!