Query psy17551
Match_columns 73
No_of_seqs 103 out of 805
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 16:29:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17551.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17551hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3si5_X Protein CASC5; BUBR1-bl 51.2 5.2 0.00018 17.6 0.7 19 7-25 2-20 (24)
2 1b56_A Fatty acid binding prot 35.5 15 0.00051 22.0 1.3 31 1-32 1-32 (135)
3 1q90_R Cytochrome B6-F complex 34.9 47 0.0016 16.8 4.1 36 25-60 6-41 (49)
4 2eqf_A Tumor necrosis factor, 34.3 19 0.00064 18.1 1.3 13 58-70 6-19 (46)
5 3lu0_E DNA-directed RNA polyme 24.2 72 0.0025 18.1 2.8 20 16-37 4-23 (91)
6 1xv2_A ALDC, hypothetical prot 21.5 30 0.001 22.9 0.9 25 4-29 14-38 (237)
7 3ixz_B Potassium-transporting 18.9 1.3E+02 0.0043 20.5 3.6 14 29-42 36-49 (290)
8 2a6h_E RNA polymerase omega ch 18.6 1.1E+02 0.0036 17.5 2.8 20 16-37 4-23 (99)
9 2l16_A SEC-independent protein 17.5 88 0.003 17.2 2.2 17 25-41 2-18 (78)
10 1xn7_A Hypothetical protein YH 13.1 1.6E+02 0.0055 15.8 2.5 26 1-26 1-27 (78)
No 1
>3si5_X Protein CASC5; BUBR1-blinkin complex, mitotic checkpoint, BUBR1, blinkin/KN chromosome segregation, cell cycle; 2.20A {Homo sapiens}
Probab=51.18 E-value=5.2 Score=17.62 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=14.6
Q ss_pred HhhhccccCCCHHHHHHHc
Q psy17551 7 ILEISKKNSMAYDDVLLKL 25 (73)
Q Consensus 7 ~~~~~~~~~~~fD~il~~v 25 (73)
+|-.|+++.++|++.++++
T Consensus 2 ~~~~ssekKinfndFIKRL 20 (24)
T 3si5_X 2 PLGSSSENKIDFNDFIKRL 20 (26)
T ss_pred CCccchhhhccHHHHHHHH
Confidence 4556777889999998864
No 2
>1b56_A Fatty acid binding protein; lipid-binding, fatty acid transport, beta barrel, lipid binding protein; HET: PLM; 2.05A {Homo sapiens} SCOP: b.60.1.2 PDB: 1jjj_A
Probab=35.55 E-value=15 Score=22.04 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=18.3
Q ss_pred CcchhhHhh-hccccCCCHHHHHHHcCCCchHH
Q psy17551 1 MADISVILE-ISKKNSMAYDDVLLKLGEFGRYQ 32 (73)
Q Consensus 1 ~~~~~~~~~-~~~~~~~~fD~il~~vG~fG~yQ 32 (73)
||++..+.- .....+-+||+.|+.+| .|...
T Consensus 1 ~~~~~~f~G~wkl~sseNfdeylkalG-v~~~~ 32 (135)
T 1b56_A 1 MATVQQLEGRWRLVDSKGFDEYMKELG-VGIAL 32 (135)
T ss_dssp --CGGGGCEEEEEEECCSHHHHHHHHT-CCHHH
T ss_pred CCCchHcCEEEEEecccCHHHHHHHcC-CCHHH
Confidence 566664432 22224678999999998 56544
No 3
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=34.91 E-value=47 Score=16.82 Aligned_cols=36 Identities=8% Similarity=-0.112 Sum_probs=23.0
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy17551 25 LGEFGRYQKRIYFLLCLPALSCAFHKLIGVFLNLKT 60 (73)
Q Consensus 25 vG~fG~yQ~~~~~l~~l~~~~~a~~~l~~vF~~~~P 60 (73)
+-+.+|.|.+..+++....+..+.-.+-++-....|
T Consensus 6 ~pdm~RRqfln~l~~G~~a~~a~~~~~P~v~ffvpP 41 (49)
T 1q90_R 6 VPDMNKRNIMNLILAGGAGLPITTLALGYGAFFVPP 41 (49)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhhheeecCC
Confidence 456899999998888777666555444444333333
No 4
>2eqf_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=34.26 E-value=19 Score=18.07 Aligned_cols=13 Identities=8% Similarity=-0.038 Sum_probs=10.1
Q ss_pred CCCCccccCC-CCc
Q psy17551 58 LKTQYRSFQS-FEV 70 (73)
Q Consensus 58 ~~P~h~C~~p-~e~ 70 (73)
..|+-||+.| |++
T Consensus 6 ~~pKqrC~apgCdh 19 (46)
T 2eqf_A 6 SGPKQRCRAPACDH 19 (46)
T ss_dssp CCCSCSCSSTTCCS
T ss_pred CcccccccCccccc
Confidence 4678999999 763
No 5
>3lu0_E DNA-directed RNA polymerase subunit omega; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_E*
Probab=24.23 E-value=72 Score=18.08 Aligned_cols=20 Identities=20% Similarity=0.414 Sum_probs=15.6
Q ss_pred CCHHHHHHHcCCCchHHHHHHH
Q psy17551 16 MAYDDVLLKLGEFGRYQKRIYF 37 (73)
Q Consensus 16 ~~fD~il~~vG~fG~yQ~~~~~ 37 (73)
.++|+++++++ +||.+.+..
T Consensus 4 ~tvddlL~kV~--nRY~LV~~A 23 (91)
T 3lu0_E 4 VTVQDAVEKIG--NRFDLVLVA 23 (91)
T ss_dssp TTHHHHHHHSS--SHHHHHHHH
T ss_pred CCHHHHHHHcC--CHhHHHHHH
Confidence 57899999999 799855443
No 6
>1xv2_A ALDC, hypothetical protein, similar to alpha- acetolactate decarboxylase; structural genomics, MCSG; 2.00A {Staphylococcus aureus subsp} SCOP: d.290.1.1
Probab=21.45 E-value=30 Score=22.95 Aligned_cols=25 Identities=12% Similarity=0.361 Sum_probs=18.4
Q ss_pred hhhHhhhccccCCCHHHHHHHcCCCc
Q psy17551 4 ISVILEISKKNSMAYDDVLLKLGEFG 29 (73)
Q Consensus 4 ~~~~~~~~~~~~~~fD~il~~vG~fG 29 (73)
++.|++..-.-.+++++++++ |.||
T Consensus 14 ~~aLm~G~y~G~~ti~eLl~h-GdfG 38 (237)
T 1xv2_A 14 LGTLMAGLLEGTATINELLEH-GNLG 38 (237)
T ss_dssp HHHHHTTCCCCCEEHHHHHTT-CSEE
T ss_pred HHHHhccccCCcccHHHHHhC-CCce
Confidence 355666666677888999977 8776
No 7
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B
Probab=18.88 E-value=1.3e+02 Score=20.49 Aligned_cols=14 Identities=7% Similarity=0.121 Sum_probs=7.2
Q ss_pred chHHHHHHHHHHHH
Q psy17551 29 GRYQKRIYFLLCLP 42 (73)
Q Consensus 29 G~yQ~~~~~l~~l~ 42 (73)
++.++++|.++...
T Consensus 36 sW~~IllFYliFY~ 49 (290)
T 3ixz_B 36 RWVWISLYYVAFYV 49 (290)
T ss_pred hHHHHHHHHHHHHH
Confidence 44566665544433
No 8
>2a6h_E RNA polymerase omega chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.143.1.1 PDB: 1smy_E* 1zyr_E* 1iw7_E* 2a69_E* 2a6e_E 2a68_E* 2be5_E* 2cw0_E 3dxj_E* 2o5i_E 2o5j_E* 2ppb_E* 3aoh_E* 3aoi_E* 3eql_E* 1ynj_K* 1i6v_E* 1l9u_E 1l9z_E 1hqm_E* ...
Probab=18.61 E-value=1.1e+02 Score=17.55 Aligned_cols=20 Identities=10% Similarity=0.243 Sum_probs=15.0
Q ss_pred CCHHHHHHHcCCCchHHHHHHH
Q psy17551 16 MAYDDVLLKLGEFGRYQKRIYF 37 (73)
Q Consensus 16 ~~fD~il~~vG~fG~yQ~~~~~ 37 (73)
.+.|++++++++ ||...+..
T Consensus 4 p~iddll~kv~n--rY~LV~~a 23 (99)
T 2a6h_E 4 PGIDKLFGMVDS--KYRLTVVV 23 (99)
T ss_dssp TTHHHHHHHSSS--HHHHHHHH
T ss_pred CCHHHHHhhcCC--HhHHHHHH
Confidence 468999999994 88855443
No 9
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=17.47 E-value=88 Score=17.18 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=11.6
Q ss_pred cCCCchHHHHHHHHHHH
Q psy17551 25 LGEFGRYQKRIYFLLCL 41 (73)
Q Consensus 25 vG~fG~yQ~~~~~l~~l 41 (73)
++++|.+++++.+++.+
T Consensus 2 Mf~ig~~ElliIlvVaL 18 (78)
T 2l16_A 2 FSNIGIPGLILIFVIAL 18 (78)
T ss_dssp CSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 35789999777665544
No 10
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=13.13 E-value=1.6e+02 Score=15.77 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=16.7
Q ss_pred CcchhhHhhhc-cccCCCHHHHHHHcC
Q psy17551 1 MADISVILEIS-KKNSMAYDDVLLKLG 26 (73)
Q Consensus 1 ~~~~~~~~~~~-~~~~~~fD~il~~vG 26 (73)
|+-...|++.. ....++.+++-+++|
T Consensus 1 mm~L~~Il~~L~~~g~vsv~eLa~~l~ 27 (78)
T 1xn7_A 1 MASLIQVRDLLALRGRMEAAQISQTLN 27 (78)
T ss_dssp CCCHHHHHHHHHHSCSBCHHHHHHHTT
T ss_pred CchHHHHHHHHHHcCCCcHHHHHHHHC
Confidence 55666777743 345677777777654
Done!