Query psy17551
Match_columns 73
No_of_seqs 103 out of 805
Neff 6.8
Searched_HMMs 13730
Date Fri Aug 16 16:29:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17551.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17551hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90r_ f.23.12.1 (R:) ISP sub 51.4 9.8 0.00072 17.5 4.0 30 24-53 3-32 (39)
2 d2a0aa1 b.60.1.2 (A:1-131) Der 31.6 5.2 0.00038 22.4 0.2 17 14-31 12-28 (131)
3 d1z9ha1 a.45.1.1 (A:213-373) M 30.5 24 0.0017 20.6 3.2 22 22-43 52-73 (161)
4 d1v66a_ a.140.2.1 (A:) p53 bin 22.0 27 0.0019 17.6 1.9 33 1-33 1-36 (65)
5 d1vyfa_ b.60.1.2 (A:) Fatty ac 19.4 13 0.00093 20.9 0.3 29 1-32 3-31 (135)
6 d1sfxa_ a.4.5.50 (A:) Hypothet 14.6 36 0.0027 17.7 1.5 23 17-40 8-30 (109)
7 d1no1a_ a.179.1.1 (A:) Repliso 12.4 7.7 0.00056 19.3 -1.7 13 20-32 8-22 (67)
8 d1lfoa_ b.60.1.2 (A:) Liver fa 11.9 44 0.0032 18.2 1.3 18 14-32 11-28 (127)
9 d1v54d_ f.23.1.1 (D:) Mitochon 11.5 1.4E+02 0.01 16.9 5.1 37 29-65 73-109 (144)
10 d1o1va_ b.60.1.2 (A:) Ileal li 11.3 47 0.0034 18.1 1.3 16 15-31 11-26 (127)
No 1
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=51.45 E-value=9.8 Score=17.51 Aligned_cols=30 Identities=10% Similarity=-0.062 Sum_probs=20.7
Q ss_pred HcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy17551 24 KLGEFGRYQKRIYFLLCLPALSCAFHKLIG 53 (73)
Q Consensus 24 ~vG~fG~yQ~~~~~l~~l~~~~~a~~~l~~ 53 (73)
++-+.||.|.+..+++.-...+.+.-..-+
T Consensus 3 ~VpDMgrR~~MNLll~G~~~~~~~g~l~py 32 (39)
T d1q90r_ 3 EVPDMNKRNIMNLILAGGAGLPITTLALGY 32 (39)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHhccchhhhhhccce
Confidence 356789999999888776666655544333
No 2
>d2a0aa1 b.60.1.2 (A:1-131) Der f 13 allergen {House dust mite (Dermatophagoides farinae) [TaxId: 6954]}
Probab=31.65 E-value=5.2 Score=22.42 Aligned_cols=17 Identities=41% Similarity=0.595 Sum_probs=12.6
Q ss_pred cCCCHHHHHHHcCCCchH
Q psy17551 14 NSMAYDDVLLKLGEFGRY 31 (73)
Q Consensus 14 ~~~~fD~il~~vG~fG~y 31 (73)
++-+||+.|+.+| .+..
T Consensus 12 ~seNfdefLk~lG-v~~~ 28 (131)
T d2a0aa1 12 KSEKFDEFLDKLG-VGFM 28 (131)
T ss_dssp CCCSHHHHHHHHT-CCHH
T ss_pred eccCHHHHHHHcC-CCHH
Confidence 4468999999988 4443
No 3
>d1z9ha1 a.45.1.1 (A:213-373) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]}
Probab=30.51 E-value=24 Score=20.58 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=16.9
Q ss_pred HHHcCCCchHHHHHHHHHHHHH
Q psy17551 22 LLKLGEFGRYQKRIYFLLCLPA 43 (73)
Q Consensus 22 l~~vG~fG~yQ~~~~~l~~l~~ 43 (73)
+..+|+||.++++++-....+.
T Consensus 52 i~~~~~f~~~~r~~~~~~Ga~~ 73 (161)
T d1z9ha1 52 IVREGKFGAVEGAVAKYMGAAA 73 (161)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHH
T ss_pred HhccccccHHHHHHHHHcCHHH
Confidence 3479999999999887665543
No 4
>d1v66a_ a.140.2.1 (A:) p53 binding domain of protein inhibitor of activated STAT protein 1, PIAS-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.03 E-value=27 Score=17.65 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=17.6
Q ss_pred CcchhhHhhhccc-cCCCHHHHHHHcCC--CchHHH
Q psy17551 1 MADISVILEISKK-NSMAYDDVLLKLGE--FGRYQK 33 (73)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~fD~il~~vG~--fG~yQ~ 33 (73)
|||+.++++-..+ .--+..-+|...|. -||-|=
T Consensus 1 mad~~e~~~Mv~sfRVsELQ~LLg~~gr~KsGrK~e 36 (65)
T d1v66a_ 1 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHE 36 (65)
T ss_dssp CCCTTHHHHHHTTCCHHHHHHHHHTTCCCCCSCHHH
T ss_pred CchHHHHHHHHHHHhHHHHHHHHHHcCCCCcccHHH
Confidence 8999998885543 22233334444332 255553
No 5
>d1vyfa_ b.60.1.2 (A:) Fatty acid-binding protein Sm14 {Blood fluke (Schistosoma mansoni) [TaxId: 6183]}
Probab=19.40 E-value=13 Score=20.86 Aligned_cols=29 Identities=24% Similarity=0.193 Sum_probs=17.6
Q ss_pred CcchhhHhhhccccCCCHHHHHHHcCCCchHH
Q psy17551 1 MADISVILEISKKNSMAYDDVLLKLGEFGRYQ 32 (73)
Q Consensus 1 ~~~~~~~~~~~~~~~~~fD~il~~vG~fG~yQ 32 (73)
|+|.++ .+-- .+.-+||+.|+.+| .|.-.
T Consensus 3 m~~f~G-twkl-~~sENfdeflkalG-v~~~~ 31 (135)
T d1vyfa_ 3 MSSFLG-KWKL-SESHNFDAVMSKLG-VSWAT 31 (135)
T ss_dssp TGGGCE-EEEE-EEEESHHHHHHHTT-CCHHH
T ss_pred hHHcce-EEEE-EeccCHHHHHHHhC-CCHHH
Confidence 555555 3311 23358999999998 44443
No 6
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=14.61 E-value=36 Score=17.68 Aligned_cols=23 Identities=39% Similarity=0.421 Sum_probs=15.4
Q ss_pred CHHHHHHHcCCCchHHHHHHHHHH
Q psy17551 17 AYDDVLLKLGEFGRYQKRIYFLLC 40 (73)
Q Consensus 17 ~fD~il~~vG~fG~yQ~~~~~l~~ 40 (73)
++.+.|+.+| +...|..++..+.
T Consensus 8 ~l~~~L~~lG-lt~~e~~v~~~L~ 30 (109)
T d1sfxa_ 8 ELVKALEKLS-FKPSDVRIYSLLL 30 (109)
T ss_dssp HHHHHHHHTC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHH
Confidence 3445666777 8889987776553
No 7
>d1no1a_ a.179.1.1 (A:) Replisome organizer (g39p helicase loader/inhibitor protein) {Bacteriophage Spp1 [TaxId: 10724]}
Probab=12.42 E-value=7.7 Score=19.33 Aligned_cols=13 Identities=46% Similarity=0.958 Sum_probs=7.6
Q ss_pred HHHHHcCCC--chHH
Q psy17551 20 DVLLKLGEF--GRYQ 32 (73)
Q Consensus 20 ~il~~vG~f--G~yQ 32 (73)
.+++.+.+| ||||
T Consensus 8 qilkavsefypgrfq 22 (67)
T d1no1a_ 8 QILKAVSEFYPGRFQ 22 (67)
T ss_dssp HHHHHHHHHSTTTCC
T ss_pred HHHHHHHHHCCCCCC
Confidence 355555555 6666
No 8
>d1lfoa_ b.60.1.2 (A:) Liver fatty acid binding protein {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=11.87 E-value=44 Score=18.24 Aligned_cols=18 Identities=6% Similarity=0.226 Sum_probs=12.9
Q ss_pred cCCCHHHHHHHcCCCchHH
Q psy17551 14 NSMAYDDVLLKLGEFGRYQ 32 (73)
Q Consensus 14 ~~~~fD~il~~vG~fG~yQ 32 (73)
++-+||+.|+.+| .|...
T Consensus 11 ~sENfd~fLk~lG-v~~~~ 28 (127)
T d1lfoa_ 11 SQENFEPFMKAMG-LPEDL 28 (127)
T ss_dssp EEESHHHHHHHHT-CCHHH
T ss_pred eccCHHHHHHHcC-CCHHH
Confidence 3468999999988 44433
No 9
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.52 E-value=1.4e+02 Score=16.89 Aligned_cols=37 Identities=0% Similarity=-0.115 Sum_probs=23.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Q psy17551 29 GRYQKRIYFLLCLPALSCAFHKLIGVFLNLKTQYRSF 65 (73)
Q Consensus 29 G~yQ~~~~~l~~l~~~~~a~~~l~~vF~~~~P~h~C~ 65 (73)
|-|-..+...+.+..+...+....-.|+...+++...
T Consensus 73 gewK~v~g~~~~~i~~s~~i~~~~r~~v~p~~P~T~~ 109 (144)
T d1v54d_ 73 NEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFE 109 (144)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCGGGS
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 4455555445555566666777778888877777653
No 10
>d1o1va_ b.60.1.2 (A:) Ileal lipid-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.34 E-value=47 Score=18.09 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=12.2
Q ss_pred CCCHHHHHHHcCCCchH
Q psy17551 15 SMAYDDVLLKLGEFGRY 31 (73)
Q Consensus 15 ~~~fD~il~~vG~fG~y 31 (73)
+-+||+.|+.+| .+..
T Consensus 11 sENfd~flkalG-v~~~ 26 (127)
T d1o1va_ 11 EKNYDEFMKLLG-ISSD 26 (127)
T ss_dssp ESSHHHHHHHHC-CCHH
T ss_pred ecCHHHHHHHcC-CCHH
Confidence 468999999998 4443
Done!