RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy17551
         (73 letters)



>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein.  [Transport and
          binding proteins, Cations and iron carrying compounds].
          Length = 505

 Score = 35.8 bits (83), Expect = 5e-04
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 26 GEFGRYQKRIYFLLCLPALSCAFHKLIGVFL 56
          GEFG +Q+R + LL LP    AFH ++ VFL
Sbjct: 1  GEFGPFQRRTFLLLALPIALLAFHFVLIVFL 31


>gnl|CDD|131906 TIGR02859, spore_sigH, RNA polymerase sigma-H factor.  Members of
          this protein family are RNA polymerase sigma-H factor
          for sporulation in endospore-forming bacteria. This
          protein is also called Sigma-30 and SigH. Although
          rather close homologs in Listeria score above the noise
          cutoff to This model, Listeria does not form spores and
          the role of the related sigma factor in that genus is
          in doubt [Transcription, Transcription factors,
          Cellular processes, Sporulation and germination].
          Length = 198

 Score = 25.9 bits (57), Expect = 1.7
 Identities = 10/39 (25%), Positives = 20/39 (51%)

Query: 1  MADISVILEISKKNSMAYDDVLLKLGEFGRYQKRIYFLL 39
          + D  ++    + N+ A + ++ K   F R + R YFL+
Sbjct: 4  LEDEEIVELARQGNTHALEYLINKYKNFVRAKARSYFLI 42


>gnl|CDD|183198 PRK11560, PRK11560, phosphoethanolamine transferase; Provisional.
          Length = 558

 Score = 25.8 bits (57), Expect = 2.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 42 PALSCAFHKLIGVFLNLKTQYRSFQSF 68
            LS      IG+FLN+   YR F S+
Sbjct: 10 QKLSFLLAVYIGLFLNIAVFYRRFDSY 36


>gnl|CDD|173227 PRK14766, PRK14766, lipoprotein signal peptidase; Provisional.
          Length = 201

 Score = 24.8 bits (54), Expect = 4.8
 Identities = 8/32 (25%), Positives = 17/32 (53%)

Query: 28  FGRYQKRIYFLLCLPALSCAFHKLIGVFLNLK 59
           +GR   ++Y ++    +   F  ++ +FLN K
Sbjct: 74  YGRLADKLYLVIIFATIFSLFLTIVFIFLNNK 105


>gnl|CDD|227360 COG5027, SAS2, Histone acetyltransferase (MYST family) [Chromatin
           structure and dynamics].
          Length = 395

 Score = 24.7 bits (54), Expect = 5.6
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 4   ISVILEISKKNSMAYDDVLLKLGEFG--RYQKRIY 36
           I+ I EISK+  M+ DDV+  L      R  K  Y
Sbjct: 331 ITDINEISKETGMSTDDVIHTLEALNILREYKGQY 365


>gnl|CDD|143644 cd07884, RHD-n_Relish, N-terminal sub-domain of the Rel homology
           domain (RHD) of the arthropod protein Relish.  Proteins
           containing the Rel homology domain (RHD) are metazoan
           transcription factors. The RHD is composed of two
           structural sub-domains; this model characterizes the
           N-terminal RHD sub-domain of the arthropod Relish
           protein, in which the RHD domain co-occurs with
           C-terminal ankyrin repeats. Family members are sometimes
           referred to as p110 or p68 (proteolytically processed
           form). Relish is an NF-kappa B-like transcription
           factor, which plays a role in mediating innate immunity
           in Drosophila. It is activated via the Imd (immune
           deficiency) pathway, which triggers phosphorylation of
           Relish. IKK-dependent proteolytic cleavage of Relish
           (which involves Dredd) results in a smaller active form
           (without the C-terminal ankyrin repeats), which is
           transported into the nucleus and functions as a
           transactivator.
          Length = 159

 Score = 24.3 bits (53), Expect = 6.8
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 9   EISKKNSMAYDDVLLKLGEFGRYQKRIYFLLCLPALSCAFHKL 51
           E+ KK +M  + V+L+   F          +C P  S   + L
Sbjct: 116 ELYKKKNMNLNQVVLRFQAFAVSANGHLRPICPPVYSNPINNL 158


>gnl|CDD|178777 PLN03239, PLN03239, histone acetyltransferase; Provisional.
          Length = 351

 Score = 24.2 bits (52), Expect = 8.9
 Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 2/34 (5%)

Query: 7   ILEISKKNSMAYDDVLLKLGEFG--RYQKRIYFL 38
           I++I+KK S+  +D++  L + G  ++   IYF+
Sbjct: 287 IMDIAKKTSIMAEDIVFALNQLGILKFINGIYFI 320


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.330    0.143    0.413 

Gapped
Lambda     K      H
   0.267   0.0740    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,616,215
Number of extensions: 273381
Number of successful extensions: 250
Number of sequences better than 10.0: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 8
Length of query: 73
Length of database: 10,937,602
Length adjustment: 43
Effective length of query: 30
Effective length of database: 9,030,380
Effective search space: 270911400
Effective search space used: 270911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.2 bits)