Query psy17558
Match_columns 317
No_of_seqs 292 out of 1508
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 16:36:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17558.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17558hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2289|consensus 100.0 5.1E-34 1.1E-38 271.5 6.8 176 16-315 36-211 (316)
2 PTZ00101 rhomboid-1 protease; 99.9 1.3E-24 2.7E-29 205.1 12.8 166 147-314 16-193 (278)
3 PRK10907 intramembrane serine 99.9 2.6E-21 5.7E-26 182.6 11.9 193 101-305 9-216 (276)
4 COG0705 Membrane associated se 99.8 4.2E-19 9.1E-24 162.0 9.6 133 179-312 18-159 (228)
5 PF01694 Rhomboid: Rhomboid fa 99.7 1.7E-17 3.8E-22 139.8 10.6 94 219-312 2-96 (145)
6 KOG2290|consensus 99.4 3.2E-14 7E-19 139.8 1.6 103 214-316 442-544 (652)
7 KOG2289|consensus 99.1 1.2E-11 2.6E-16 118.5 2.2 60 87-146 101-165 (316)
8 KOG2632|consensus 98.9 2E-09 4.4E-14 100.1 7.7 115 177-301 14-141 (258)
9 PF08551 DUF1751: Eukaryotic i 98.2 2E-06 4.3E-11 69.7 5.3 76 222-297 7-94 (99)
10 COG0705 Membrane associated se 98.0 7.9E-06 1.7E-10 74.6 5.0 78 219-310 136-213 (228)
11 PTZ00101 rhomboid-1 protease; 97.8 7.8E-06 1.7E-10 77.8 0.9 83 59-145 52-147 (278)
12 KOG2980|consensus 97.7 9.5E-06 2.1E-10 77.3 -0.1 119 179-303 117-240 (310)
13 KOG0858|consensus 97.0 0.0046 1E-07 57.4 9.5 94 209-313 36-136 (239)
14 PF04511 DER1: Der1-like famil 97.0 0.0028 6.2E-08 57.1 7.7 69 212-280 28-103 (197)
15 PRK10907 intramembrane serine 96.0 0.0017 3.7E-08 61.8 -0.3 31 98-128 128-158 (276)
16 KOG2890|consensus 95.7 0.012 2.6E-07 56.4 4.4 80 221-300 65-156 (326)
17 PF01694 Rhomboid: Rhomboid fa 95.2 0.0019 4.2E-08 54.0 -2.8 45 101-145 2-51 (145)
18 KOG2290|consensus 93.2 0.2 4.4E-06 50.8 6.3 49 97-145 443-496 (652)
19 KOG4463|consensus 92.3 0.18 4E-06 47.7 4.4 59 220-279 48-106 (323)
20 COG5291 Predicted membrane pro 91.1 0.85 1.8E-05 43.0 7.3 39 219-257 56-95 (313)
21 KOG2632|consensus 60.2 7 0.00015 37.0 2.5 70 50-127 6-75 (258)
22 PF09527 ATPase_gene1: Putativ 44.4 1.1E+02 0.0024 21.5 6.3 42 237-278 8-50 (55)
23 PF04892 VanZ: VanZ like famil 35.8 1.9E+02 0.0041 23.5 7.2 73 234-306 49-130 (133)
24 PF06946 Phage_holin_5: Phage 31.1 76 0.0016 25.6 3.8 49 263-311 38-87 (93)
25 PF08122 NDUF_B12: NADH-ubiqui 30.8 19 0.0004 26.3 0.3 11 98-108 3-13 (57)
26 PF14898 DUF4491: Domain of un 27.2 1.9E+02 0.004 23.5 5.4 62 236-303 3-70 (94)
27 COG2205 KdpD Osmosensitive K+ 27.0 1.8E+02 0.004 32.2 6.9 57 248-317 411-467 (890)
28 PF14241 DUF4341: Domain of un 23.6 1.2E+02 0.0026 22.3 3.5 34 266-299 6-39 (62)
29 COG3952 Predicted membrane pro 23.6 4.3E+02 0.0093 22.0 7.0 91 226-316 14-111 (113)
30 TIGR02854 spore_II_GA sigma-E 23.5 3.3E+02 0.0071 26.0 7.5 31 237-267 11-41 (288)
31 PF11151 DUF2929: Protein of u 21.8 1.7E+02 0.0036 21.3 3.9 42 265-308 14-55 (57)
32 PRK10490 sensor protein KdpD; 20.4 3.4E+02 0.0074 30.1 7.7 26 250-275 416-441 (895)
No 1
>KOG2289|consensus
Probab=100.00 E-value=5.1e-34 Score=271.53 Aligned_cols=176 Identities=36% Similarity=0.640 Sum_probs=149.8
Q ss_pred ccchhhhhhhheeeeccCCCCCcccccccCCCccchhcccCCCCchhHHHHHHHHHHhhheeeEeeCCcccccCcccccc
Q psy17558 16 KPKWNRLNSYVRKTVVPRHRIQPQVRHKVEPDGIYEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTL 95 (317)
Q Consensus 16 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~c~ppp~f~i~is~~ei~~f~y~~~~~~~~~~~~~~~~s~l 95 (317)
..+.++.++.++.+.+|++. ++.+|.|.++|||||+||+++|++|+++|.||++..++....++
T Consensus 36 ~~~~~~~i~~~~~~~~~~~~----------~~~~~~d~~~~~~~~~f~~~~~~~~l~~f~~~~~~~n~~~~~s~------ 99 (316)
T KOG2289|consen 36 RSWTKWLIPRFAVANVPEFI----------VVMYVNDCPKCCPPPIFMLCLAIVFLGRFSFQGLRENPLLGPSS------ 99 (316)
T ss_pred chhhHHHHhHHHhhccchhh----------eeeeeecccccCCCchhhhhhhhhhhheeeeeeeccCCccCcCC------
Confidence 44456778888888888874 58899999999999999999999999999999876533211110
Q ss_pred eecCchhhHHHHHHHHHHHhhhhccccccchhhhhhhcccccccccccccccccccCCCCcccccccCCCCcchhhcccC
Q psy17558 96 IYNPFHRAEVWRFMTYMLVHVGIWENAAQDEADVVVIRKPKWNRLNSYVRKTVVPRHRIQPQVRHKVEPDGIYEDEYTCI 175 (317)
Q Consensus 96 ~y~p~~r~e~WRf~tym~~h~g~~Hl~~~~~~~~~l~~~~kwrr~~~Yv~~~vlP~~~~~~~v~~~~~~~~~y~~~~~~~ 175 (317)
T Consensus 100 -------------------------------------------------------------------------------- 99 (316)
T KOG2289|consen 100 -------------------------------------------------------------------------------- 99 (316)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeehhHHHHHHhhhhHHhhhhccccccccccccccccccCCCcCchhhhhhhhhccccHHHHHHHHHHHHHHHHHHHH
Q psy17558 176 PPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEM 255 (317)
Q Consensus 176 ~ppv~~~lI~ii~i~vFi~~~~~~~~~~~~~g~~~~~~~~~p~~~~e~wRllT~~FlH~g~~HLl~Nm~~L~~~G~~lE~ 255 (317)
.......+..+++|.+++|+||++||||+|+|+.||++||+.|+++|..+|.
T Consensus 100 ----------------------------~~~~~~~~~~i~~~~~r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~ 151 (316)
T KOG2289|consen 100 ----------------------------LTLEKMGGLLIYKPVHRGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQ 151 (316)
T ss_pred ----------------------------CCccccCCceecChhhhchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHh
Confidence 0111234455677777888888888888899999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHhhcCCCceechHHHHHHHHHHHHHHHHHhccccCCCC
Q psy17558 256 VHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYALIAAHVATIIMVRSLLKQQW 315 (317)
Q Consensus 256 ~~G~~r~l~iyl~~gl~gsl~~~l~~p~~~~vGASGav~gLlga~~~~~~~~~~~m~~~~ 315 (317)
.+|.+|+.++|++||++||+++++++++.++||||||+|||+||+++++++||++|+..+
T Consensus 152 ~~G~~RiglIYl~gg~aGSlls~l~d~~~~sVGASggvfaLlgA~Ls~l~~Nw~~m~~~~ 211 (316)
T KOG2289|consen 152 VHGFLRIGLIYLAGGVAGSLLSSLFDPNSISVGASGGVFALLGAHLSNLLTNWTIMKNKF 211 (316)
T ss_pred hcCceEEeeehhhhhhhhHHHHHHhccCCceecccHHHHHHHHHHHHHHHhhHHHhcchH
Confidence 999999999999999999999999999999999999999999999999999999998764
No 2
>PTZ00101 rhomboid-1 protease; Provisional
Probab=99.92 E-value=1.3e-24 Score=205.07 Aligned_cols=166 Identities=17% Similarity=0.270 Sum_probs=129.1
Q ss_pred cccccCCCCcccccccC--CCCcchhh----cccCCCCeehhHHHHHHhhhhHHhhhhcccccccccc----ccc-cccc
Q psy17558 147 TVVPRHRIQPQVRHKVE--PDGIYEDE----YTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGP----MAK-TLIY 215 (317)
Q Consensus 147 ~vlP~~~~~~~v~~~~~--~~~~y~~~----~~~~~ppv~~~lI~ii~i~vFi~~~~~~~~~~~~~g~----~~~-~~~~ 215 (317)
+..|-++.|.+..+++. +++...++ +.+...+.++..|+++|+++|++....+.+. ..++ ... ...+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~i~~ler~Fp~f~i~~l~~~Iiii~iivfil~l~~~~~~--~l~p~~~~L~~~Ga~~ 93 (278)
T PTZ00101 16 ENTPFNRAEKYYQSQSSFIQRSKPIDVLNLIFPHFTWKSFIMAISIIQIIVFIISVSIKPAD--FLTPSDSLLVTLGANV 93 (278)
T ss_pred ccCcccchhhcccccccccccCCChHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHhcccc--cCCCCHHHHHHHhCcc
Confidence 45666655555555544 45554444 5555668888889999999999887643221 1111 111 1122
Q ss_pred cCC-CcCchhhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhcCCCceechHHHHH
Q psy17558 216 NPF-HRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVY 294 (317)
Q Consensus 216 ~p~-~~~e~wRllT~~FlH~g~~HLl~Nm~~L~~~G~~lE~~~G~~r~l~iyl~~gl~gsl~~~l~~p~~~~vGASGav~ 294 (317)
.|. .++|+||++|++|+|.|+.|+++||++++.+|..+|+.+|++|++++|++||++|++++..+.+...++||||++|
T Consensus 94 ~~~i~~gq~WRLiT~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~ilYl~sGi~G~l~s~~~~~~~~svGASgAif 173 (278)
T PTZ00101 94 ASRIKQGEIHRLILPIFLHANIFHTFFNVFFQLRMGFTLEKNYGIVKIIILYFLTGIYGNILSSSVTYCPIKVGASTSGM 173 (278)
T ss_pred hhhhhcCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHccCCcEEehhHHHH
Confidence 232 4799999999999999999999999999999999999999999999999999999999999888778999999999
Q ss_pred HHHHHHHHHHHHhccccCCC
Q psy17558 295 ALIAAHVATIIMVRSLLKQQ 314 (317)
Q Consensus 295 gLlga~~~~~~~~~~~m~~~ 314 (317)
|++|++++..+++|+.++.+
T Consensus 174 GLiGa~~~~lil~w~~~~~~ 193 (278)
T PTZ00101 174 GLLGIVTSELILLWHVIRHR 193 (278)
T ss_pred HHHHHHHHHHHHHHHhhccH
Confidence 99999999999998877643
No 3
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=99.85 E-value=2.6e-21 Score=182.57 Aligned_cols=193 Identities=19% Similarity=0.255 Sum_probs=128.1
Q ss_pred hhhHHHHHHHHHHHhhhhccccccc-hhhhhhhcccccccc----cccccccccccCCCCccccc----------ccCCC
Q psy17558 101 HRAEVWRFMTYMLVHVGIWENAAQD-EADVVVIRKPKWNRL----NSYVRKTVVPRHRIQPQVRH----------KVEPD 165 (317)
Q Consensus 101 ~r~e~WRf~tym~~h~g~~Hl~~~~-~~~~~l~~~~kwrr~----~~Yv~~~vlP~~~~~~~v~~----------~~~~~ 165 (317)
.-..+..|..||--+ |+.|-..+. -.++.|....+-..+ .++.++.--|+ |-.. .+..+
T Consensus 9 ~~~~a~~f~dyl~~~-~i~~~~~~~~~~~lwl~d~~~~~~~~~~~~~f~~~p~~~~-----y~~asw~~g~~~~~~~~~~ 82 (276)
T PRK10907 9 NPRLAQAFVDYMATQ-GVILTIQQHNQSDIWLADESQAERVRAELARFLENPADPR-----YLAASWQSGHTNSGLRYRR 82 (276)
T ss_pred CHHHHHHHHHHHHHC-CCcEEEecCCceEEEecCHHHHHHHHHHHHHHHhCCCchh-----HHhcccccCCCCCCccccc
Confidence 345788899999988 888854321 111223322222211 12222111111 1111 11223
Q ss_pred CcchhhcccCCCCeehhHHHHHHhhhhHHhhhhccccccccccccccccccCCCcCchhhhhhhhhccccHHHHHHHHHH
Q psy17558 166 GIYEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGGFHLVVNLLV 245 (317)
Q Consensus 166 ~~y~~~~~~~~ppv~~~lI~ii~i~vFi~~~~~~~~~~~~~g~~~~~~~~~p~~~~e~wRllT~~FlH~g~~HLl~Nm~~ 245 (317)
....++.+.+..|++.. ++++|+++|+++...+..... ....+..++...+|+||++|++|+|.|+.|+++||+.
T Consensus 83 ~~~~~~~~~~~~p~T~~-li~i~i~vf~l~~~~~~~~~~----~~l~~~~~~~~~~q~WRl~T~~flH~~~~Hl~fNml~ 157 (276)
T PRK10907 83 FPFLATLRERAGPLTLG-VMIACVVVFILMQILGDQTVM----LWLAWPFDPSLKFELWRYFTHALLHFSLLHILFNLLW 157 (276)
T ss_pred chHHHhhccCCCCHHHH-HHHHHHHHHHHHHHhccHHHH----HHHhccccccccCCcHHHHhHHHHhCCHHHHHHHHHH
Confidence 44555555556676655 457899999987664322100 0001112233578999999999999999999999999
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhcCCCceechHHHHHHHHHHHHHHHH
Q psy17558 246 QILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYALIAAHVATII 305 (317)
Q Consensus 246 L~~~G~~lE~~~G~~r~l~iyl~~gl~gsl~~~l~~p~~~~vGASGav~gLlga~~~~~~ 305 (317)
++.+|..+|+.+|+++++.+|++++++|+++++++.. ...+|+||++||++|+......
T Consensus 158 l~~lG~~iE~~~G~~~~l~l~l~s~i~~~~~~~~~~~-~~~gGaSGvVygL~g~~~~~~~ 216 (276)
T PRK10907 158 WWYLGGAVEKRLGSGKLIVITLISALLSGWVQSKFSG-PWFGGLSGVVYALMGYVWLRGE 216 (276)
T ss_pred HHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHcc-chhhHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999888765 3578999999999998765543
No 4
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=99.78 E-value=4.2e-19 Score=161.99 Aligned_cols=133 Identities=28% Similarity=0.419 Sum_probs=103.5
Q ss_pred eehhHHHHHHhhhhHHhhhhcccccccc-------ccccccccccCCCcCchhhhhhhhhccccHHHHHHHHHHHHHHHH
Q psy17558 179 VIMIFISAVEIGFFLYDAMIVGDTYSLR-------GPMAKTLIYNPFHRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGI 251 (317)
Q Consensus 179 v~~~lI~ii~i~vFi~~~~~~~~~~~~~-------g~~~~~~~~~p~~~~e~wRllT~~FlH~g~~HLl~Nm~~L~~~G~ 251 (317)
..+..+.++|+++|+++...+....... +..+....... .+.|+||++|++|+|+|+.|+++||+.++.+|.
T Consensus 18 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~w~lit~~FlH~~~~Hll~N~~~l~~fg~ 96 (228)
T COG0705 18 PVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGAL-ARDQLWRLITAIFLHAGFLHLLFNMLALWVFGS 96 (228)
T ss_pred hHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhHHhhcchhhhccc-cccchHHHHHHHHHHhhHHHHHHHHHHHHHhhH
Confidence 3445555899999999887654421111 11111111111 122899999999999999999999999999999
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHhhcCCC--ceechHHHHHHHHHHHHHHHHHhccccC
Q psy17558 252 PLEMVHRWWRVLIIYLVGVLAGSLATSITDPHV--FLAGASGGVYALIAAHVATIIMVRSLLK 312 (317)
Q Consensus 252 ~lE~~~G~~r~l~iyl~~gl~gsl~~~l~~p~~--~~vGASGav~gLlga~~~~~~~~~~~m~ 312 (317)
.+|+.+|+.+++.+|+++|+.+++++..+.+.. +++||||+++|++|+++...-..+..+.
T Consensus 97 ~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~~~~~~~~GASG~i~gllga~~~~~~~~~~~~~ 159 (228)
T COG0705 97 NLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAIFGLLGAYFLLFPFARILLL 159 (228)
T ss_pred HHHHHhchhHHHHHHHHHHHHHHHHHHHHcccccCcccchhHHHHHHHHHHHHHccccchhhh
Confidence 999999999999999999999999999888764 7999999999999999988766555443
No 5
>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=99.73 E-value=1.7e-17 Score=139.79 Aligned_cols=94 Identities=32% Similarity=0.449 Sum_probs=81.0
Q ss_pred CcCchhhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhcCCC-ceechHHHHHHHH
Q psy17558 219 HRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHV-FLAGASGGVYALI 297 (317)
Q Consensus 219 ~~~e~wRllT~~FlH~g~~HLl~Nm~~L~~~G~~lE~~~G~~r~l~iyl~~gl~gsl~~~l~~p~~-~~vGASGav~gLl 297 (317)
+++|+||++||+|+|.|+.|+++|++.++.+|..+|+.+|++++..+|+++++++++...++.+.. ..+|+||+++|++
T Consensus 2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~G~Sg~~~~l~ 81 (145)
T PF01694_consen 2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSPPNQPYVGASGAVFGLL 81 (145)
T ss_dssp GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----SSHHHHHHHH
T ss_pred CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhccccccccccccCCCcccchHHH
Confidence 468999999999999999999999999999999999999999999999999999999998887765 8899999999999
Q ss_pred HHHHHHHHHhccccC
Q psy17558 298 AAHVATIIMVRSLLK 312 (317)
Q Consensus 298 ga~~~~~~~~~~~m~ 312 (317)
+++......+++++.
T Consensus 82 ~~~~~~~~~~~~~~~ 96 (145)
T PF01694_consen 82 GAFLFLYPQNKKRLR 96 (145)
T ss_dssp HHHHHHHHCCCCCS-
T ss_pred HHHHHHHhhccchhh
Confidence 999999998877665
No 6
>KOG2290|consensus
Probab=99.43 E-value=3.2e-14 Score=139.76 Aligned_cols=103 Identities=25% Similarity=0.505 Sum_probs=98.1
Q ss_pred cccCCCcCchhhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhcCCCceechHHHH
Q psy17558 214 IYNPFHRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGV 293 (317)
Q Consensus 214 ~~~p~~~~e~wRllT~~FlH~g~~HLl~Nm~~L~~~G~~lE~~~G~~r~l~iyl~~gl~gsl~~~l~~p~~~~vGASGav 293 (317)
.++|+..+|++|++||.|+|+|+.|++..+.++..+-..+|+..|+.|+.++|++||+.|++++.+|-|..+.||.||+-
T Consensus 442 Fln~e~PdQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~SGitGNLASAIFlpY~~eVgPa~sQ 521 (652)
T KOG2290|consen 442 FLNPEVPDQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFLSGITGNLASAIFLPYRAEVGPAGSQ 521 (652)
T ss_pred ccCCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeecccccccchheeeeccccccCCcccc
Confidence 34667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccCCCCC
Q psy17558 294 YALIAAHVATIIMVRSLLKQQWD 316 (317)
Q Consensus 294 ~gLlga~~~~~~~~~~~m~~~~~ 316 (317)
+|+++..++.++.+|+-++++|+
T Consensus 522 ~Gila~l~vEl~qs~~il~~~w~ 544 (652)
T KOG2290|consen 522 FGILACLFVELFQSWQILERPWR 544 (652)
T ss_pred cchHHHHHHHHHhhhHhhhhHHH
Confidence 99999999999999999988764
No 7
>KOG2289|consensus
Probab=99.15 E-value=1.2e-11 Score=118.54 Aligned_cols=60 Identities=28% Similarity=0.455 Sum_probs=54.3
Q ss_pred ccCcccccceecCchhhHHHHHHHHHHHhhhhccccccchhhhh----hhcc-cccccccccccc
Q psy17558 87 LRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGIWENAAQDEADVV----VIRK-PKWNRLNSYVRK 146 (317)
Q Consensus 87 ~~~~~~s~l~y~p~~r~e~WRf~tym~~h~g~~Hl~~~~~~~~~----l~~~-~kwrr~~~Yv~~ 146 (317)
...++.+++||+|.+|.|+|||+|||++|||++|+..|.+.|++ ||.. +-||....|+.-
T Consensus 101 ~~~~~~~~~i~~~~~r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~RiglIYl~g 165 (316)
T KOG2289|consen 101 TLEKMGGLLIYKPVHRGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGLIYLAG 165 (316)
T ss_pred CccccCCceecChhhhchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEeeehhhh
Confidence 44688999999999999999999999999999999999999876 8877 559999999874
No 8
>KOG2632|consensus
Probab=98.94 E-value=2e-09 Score=100.11 Aligned_cols=115 Identities=23% Similarity=0.294 Sum_probs=85.5
Q ss_pred CCeehhHHHHHHhhhhHHhhhhccccccccccccccccccCC---CcCchhhhhhhhhccccHHHHHHHHHHHHHHHHHH
Q psy17558 177 PPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPF---HRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPL 253 (317)
Q Consensus 177 ppv~~~lI~ii~i~vFi~~~~~~~~~~~~~g~~~~~~~~~p~---~~~e~wRllT~~FlH~g~~HLl~Nm~~L~~~G~~l 253 (317)
.|..+..+...+.++++...... .. .....|. .+.|+||++||.++|.+..|+++||+.+|.+|...
T Consensus 14 ~p~~ts~~~~~~~~i~lv~~~~~---------i~-~~~~l~~~~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~~f 83 (258)
T KOG2632|consen 14 IPLLTSIVVVLAILIYLVSFFPG---------IV-EVLGLPSELLINWQLYRLITYALVHLSLPHLLFNMLALWPLGSQF 83 (258)
T ss_pred chHHHHHHHHHHHHHHHHhccch---------hh-hHhcCCHHHhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchhHH
Confidence 34455555567777777654422 11 1111221 47899999999999999999999999999999999
Q ss_pred HHhhc-hHHHHHHHHHHHHHHHHHHHhhc------C---CCceechHHHHHHHHHHHH
Q psy17558 254 EMVHR-WWRVLIIYLVGVLAGSLATSITD------P---HVFLAGASGGVYALIAAHV 301 (317)
Q Consensus 254 E~~~G-~~r~l~iyl~~gl~gsl~~~l~~------p---~~~~vGASGav~gLlga~~ 301 (317)
|+.+| +.+++.+..+-++..++...+.. . ....+|-||..||.++.-.
T Consensus 84 E~~~G~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a~G~s~v~Fam~~~~~ 141 (258)
T KOG2632|consen 84 ERTHGTTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGAIGFSGVLFAMMAVLE 141 (258)
T ss_pred HhhccceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccccHHHHHHHHHHh
Confidence 99999 88888888888888887776542 1 1336899999999988743
No 9
>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins. Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].
Probab=98.22 E-value=2e-06 Score=69.74 Aligned_cols=76 Identities=22% Similarity=0.208 Sum_probs=62.9
Q ss_pred chhhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhh--------c-CC---Cceech
Q psy17558 222 EVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSIT--------D-PH---VFLAGA 289 (317)
Q Consensus 222 e~wRllT~~FlH~g~~HLl~Nm~~L~~~G~~lE~~~G~~r~l~iyl~~gl~gsl~~~l~--------~-p~---~~~vGA 289 (317)
..|+++|+.|++.++..++.|.+.++..|+.+|+.+|+++++.+.++.++++++...+. + .. .+.-|.
T Consensus 7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~~~~~y~i~~~~~~l~~~i~G~ 86 (99)
T PF08551_consen 7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFLLYLLLYAITGNESYLFVPISGF 86 (99)
T ss_pred ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCceeEEEecCc
Confidence 46999999999999999999999999999999999999999999998888888776542 1 21 234567
Q ss_pred HHHHHHHH
Q psy17558 290 SGGVYALI 297 (317)
Q Consensus 290 SGav~gLl 297 (317)
+|.+.|++
T Consensus 87 ~~~~~g~l 94 (99)
T PF08551_consen 87 MGVLAGFL 94 (99)
T ss_pred HHhHhheE
Confidence 77666654
No 10
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=97.98 E-value=7.9e-06 Score=74.57 Aligned_cols=78 Identities=14% Similarity=0.080 Sum_probs=62.0
Q ss_pred CcCchhhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhcCCCceechHHHHHHHHH
Q psy17558 219 HRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYALIA 298 (317)
Q Consensus 219 ~~~e~wRllT~~FlH~g~~HLl~Nm~~L~~~G~~lE~~~G~~r~l~iyl~~gl~gsl~~~l~~p~~~~vGASGav~gLlg 298 (317)
..+++++++++.++|....|...+... ..+...+++...+..++.....++. .+++.++-+.|+++
T Consensus 136 ASG~i~gllga~~~~~~~~~~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~~~~~-~~va~~aHl~G~i~ 201 (228)
T COG0705 136 ASGAIFGLLGAYFLLFPFARILLLFLS-------------LPRPALILILIWLLYSLFSGAGSFG-PSVAWSAHLGGLIG 201 (228)
T ss_pred hhHHHHHHHHHHHHHccccchhhhhcc-------------CchhHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHH
Confidence 478999999999999999998888765 4555667777777777777766654 57899999999998
Q ss_pred HHHHHHHHhccc
Q psy17558 299 AHVATIIMVRSL 310 (317)
Q Consensus 299 a~~~~~~~~~~~ 310 (317)
+.+...+..++.
T Consensus 202 G~l~~~~~~~~~ 213 (228)
T COG0705 202 GLLLAALLSRKL 213 (228)
T ss_pred HHHHHHHHhhhh
Confidence 888887766654
No 11
>PTZ00101 rhomboid-1 protease; Provisional
Probab=97.76 E-value=7.8e-06 Score=77.77 Aligned_cols=83 Identities=14% Similarity=0.174 Sum_probs=57.2
Q ss_pred CchhHHHHHHHHHHhhheeeEeeCCc-cccc-------CcccccceecCchhhHHHHHHHHHHHhhhhccccccchhhhh
Q psy17558 59 PPVIMIFISAVEIGFFLYDAMIVGDT-YSLR-------GPMAKTLIYNPFHRAEVWRFMTYMLVHVGIWENAAQDEADVV 130 (317)
Q Consensus 59 pp~f~i~is~~ei~~f~y~~~~~~~~-~~~~-------~~~~s~l~y~p~~r~e~WRf~tym~~h~g~~Hl~~~~~~~~~ 130 (317)
-|-++..|+++|+++|+......++. ..++ |-...+++ ++.|.||++|+||+|+|+.|+..|.+.+..
T Consensus 52 i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i----~~gq~WRLiT~~FlH~~~~HLl~Nm~~l~~ 127 (278)
T PTZ00101 52 WKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRI----KQGEIHRLILPIFLHANIFHTFFNVFFQLR 127 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhh----hcCCCHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 78999999999999998754321111 1111 11122222 357999999999999999999999987644
Q ss_pred ----hhcc-ccccccccccc
Q psy17558 131 ----VIRK-PKWNRLNSYVR 145 (317)
Q Consensus 131 ----l~~~-~kwrr~~~Yv~ 145 (317)
+|.. ++||-...|+.
T Consensus 128 ~G~~lE~~~G~~r~~ilYl~ 147 (278)
T PTZ00101 128 MGFTLEKNYGIVKIIILYFL 147 (278)
T ss_pred HHHHHHHHHChHHHHHHHHH
Confidence 4444 67777667765
No 12
>KOG2980|consensus
Probab=97.67 E-value=9.5e-06 Score=77.27 Aligned_cols=119 Identities=18% Similarity=0.187 Sum_probs=85.8
Q ss_pred eehhHHHHHHhhhhHHhhhhccccccccccccccccccCCCcCchhhhhhhhhccccHHHHHHHHHHHHHHHH-HHHHhh
Q psy17558 179 VIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGI-PLEMVH 257 (317)
Q Consensus 179 v~~~lI~ii~i~vFi~~~~~~~~~~~~~g~~~~~~~~~p~~~~e~wRllT~~FlH~g~~HLl~Nm~~L~~~G~-~lE~~~ 257 (317)
++.. +.++|+++|........+- .....++.++...--.|.+++|.|.|.+.+|+..||+.+..++. .+--.+
T Consensus 117 ~v~~-ll~~n~~vf~lWrv~~~~~-----~~~~~mls~~~~~t~~w~i~~s~Fsh~~a~h~g~~~~~~~~y~~~a~~~~~ 190 (310)
T KOG2980|consen 117 VVFG-LLIANAFVFTLWRVPQKQF-----TMIPWMLSRNAYKTGCWKIILSTFSHYSALHLGPNMLVLKSYLAGALKGSL 190 (310)
T ss_pred chhH-HHHHHHHHHHHHHhcchhh-----hhhhHHhhcccccccceeEEeehhcchhHhhhcHHHHHHHHHhcccccCCc
Confidence 4444 4478999998876644321 12222344444445567799999999999999999999998887 788888
Q ss_pred chHHHHHHHHHHHHHHHHHHHhh----cCCCceechHHHHHHHHHHHHHH
Q psy17558 258 RWWRVLIIYLVGVLAGSLATSIT----DPHVFLAGASGGVYALIAAHVAT 303 (317)
Q Consensus 258 G~~r~l~iyl~~gl~gsl~~~l~----~p~~~~vGASGav~gLlga~~~~ 303 (317)
|...+..+|+.++..|......- .+..+++||||+++++++.....
T Consensus 191 ~~~~~~AlylSa~~~~~~i~~~~~v~~~~~gp~LGAsGav~ai~a~~~~l 240 (310)
T KOG2980|consen 191 GFSSFFALYLSAGVKGLFISVKDKVPTSWAGPSLGASGAVYAILALDCTL 240 (310)
T ss_pred chhhcccceeccccccceeEeeccccccccccccccchHHHHHHHHHhhc
Confidence 99999999996665555444332 23366899999999999876543
No 13
>KOG0858|consensus
Probab=97.01 E-value=0.0046 Score=57.42 Aligned_cols=94 Identities=22% Similarity=0.206 Sum_probs=69.2
Q ss_pred ccccccccCC---CcCchhhhhhhhhcccc-HHHHHHHHHHHHHHHHHHHHhhc---hHHHHHHHHHHHHHHHHHHHhhc
Q psy17558 209 MAKTLIYNPF---HRAEVWRFMTYMLVHVG-GFHLVVNLLVQILLGIPLEMVHR---WWRVLIIYLVGVLAGSLATSITD 281 (317)
Q Consensus 209 ~~~~~~~~p~---~~~e~wRllT~~FlH~g-~~HLl~Nm~~L~~~G~~lE~~~G---~~r~l~iyl~~gl~gsl~~~l~~ 281 (317)
.+..+.++|. ++.|+||++|+.+.-+. -.|.++||+.++--.+.||+-.= +..|+...+.+++.-.+.+
T Consensus 36 sP~~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY~~~LE~g~f~~rtadf~~mllf~~~l~~~~~---- 111 (239)
T KOG0858|consen 36 SPFQLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRYSSMLEEGSFRGRTADFLYMLLFGAVLLTLTG---- 111 (239)
T ss_pred CchheEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHH----
Confidence 3445667775 69999999999888876 68999999999999999999642 4677777777766555333
Q ss_pred CCCceechHHHHHHHHHHHHHHHHHhccccCC
Q psy17558 282 PHVFLAGASGGVYALIAAHVATIIMVRSLLKQ 313 (317)
Q Consensus 282 p~~~~vGASGav~gLlga~~~~~~~~~~~m~~ 313 (317)
.+..+..|.-++...+...|++..+
T Consensus 112 -------~~~~~~fLg~~l~~~l~YvWs~~Np 136 (239)
T KOG0858|consen 112 -------LFVYIVFLGQSLVFMLVYVWSKRNP 136 (239)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 2555566666677777777776543
No 14
>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins. For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.
Probab=96.97 E-value=0.0028 Score=57.09 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=50.6
Q ss_pred cccccCC---CcCchhhhhhhhhccccH-HHHHHHHHHHHHHHHHHHHhh-c-h-HHHHHHHHHHHHHHHHHHHhh
Q psy17558 212 TLIYNPF---HRAEVWRFMTYMLVHVGG-FHLVVNLLVQILLGIPLEMVH-R-W-WRVLIIYLVGVLAGSLATSIT 280 (317)
Q Consensus 212 ~~~~~p~---~~~e~wRllT~~FlH~g~-~HLl~Nm~~L~~~G~~lE~~~-G-~-~r~l~iyl~~gl~gsl~~~l~ 280 (317)
.+.++++ ++.|+||++|+.|.-++. .+.++|++.++..+..+|+.. + + ..++...+.++..-.+.+.+.
T Consensus 28 ~l~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~~~ady~~~ll~~~~~i~~~~~~~ 103 (197)
T PF04511_consen 28 YLYFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQGRSADYLWFLLFGASLILILSLLI 103 (197)
T ss_pred HeeECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455554 478999999999986654 699999999999999999983 2 2 457666666655555555443
No 15
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=95.97 E-value=0.0017 Score=61.83 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=26.9
Q ss_pred cCchhhHHHHHHHHHHHhhhhccccccchhh
Q psy17558 98 NPFHRAEVWRFMTYMLVHVGIWENAAQDEAD 128 (317)
Q Consensus 98 ~p~~r~e~WRf~tym~~h~g~~Hl~~~~~~~ 128 (317)
++....|.||++|+||+|.|+.|+..|.+.-
T Consensus 128 ~~~~~~q~WRl~T~~flH~~~~Hl~fNml~l 158 (276)
T PRK10907 128 DPSLKFELWRYFTHALLHFSLLHILFNLLWW 158 (276)
T ss_pred cccccCCcHHHHhHHHHhCCHHHHHHHHHHH
Confidence 3445679999999999999999999999764
No 16
>KOG2890|consensus
Probab=95.73 E-value=0.012 Score=56.41 Aligned_cols=80 Identities=20% Similarity=0.260 Sum_probs=63.1
Q ss_pred CchhhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH--------HHhhcCC----Cceec
Q psy17558 221 AEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLA--------TSITDPH----VFLAG 288 (317)
Q Consensus 221 ~e~wRllT~~FlH~g~~HLl~Nm~~L~~~G~~lE~~~G~~r~l~iyl~~gl~gsl~--------~~l~~p~----~~~vG 288 (317)
...|+++|+.|+-.+++-.+.|.+.+.+-|..+|..+|+..++.+|.+.-...++. .++++.. .+..|
T Consensus 65 ~~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G 144 (326)
T KOG2890|consen 65 FFPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHG 144 (326)
T ss_pred hhhHHHHhcchhhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEecc
Confidence 36899999999999999999999999999999999999999988777543333322 2333433 34679
Q ss_pred hHHHHHHHHHHH
Q psy17558 289 ASGGVYALIAAH 300 (317)
Q Consensus 289 ASGav~gLlga~ 300 (317)
..|.+.|++.|+
T Consensus 145 ~~gilaGilVa~ 156 (326)
T KOG2890|consen 145 TTGILAGILVAW 156 (326)
T ss_pred chHHHHHHHHHH
Confidence 999988887764
No 17
>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=95.16 E-value=0.0019 Score=54.00 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHHHHhhhhccccccchhhhh----hhcc-ccccccccccc
Q psy17558 101 HRAEVWRFMTYMLVHVGIWENAAQDEADVV----VIRK-PKWNRLNSYVR 145 (317)
Q Consensus 101 ~r~e~WRf~tym~~h~g~~Hl~~~~~~~~~----l~~~-~kwrr~~~Yv~ 145 (317)
++.|.||++||.|+|.|+.|+..|...... +|.+ +.+|....|+.
T Consensus 2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~ 51 (145)
T PF01694_consen 2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLL 51 (145)
T ss_dssp GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHH
Confidence 568999999999999999999999987655 3333 55555555544
No 18
>KOG2290|consensus
Probab=93.17 E-value=0.2 Score=50.76 Aligned_cols=49 Identities=14% Similarity=0.149 Sum_probs=40.3
Q ss_pred ecCchhhHHHHHHHHHHHhhhhccccccchhhhhhh----cc-ccccccccccc
Q psy17558 97 YNPFHRAEVWRFMTYMLVHVGIWENAAQDEADVVVI----RK-PKWNRLNSYVR 145 (317)
Q Consensus 97 y~p~~r~e~WRf~tym~~h~g~~Hl~~~~~~~~~l~----~~-~kwrr~~~Yv~ 145 (317)
+||+.-.|..|..+-.|+|||+.|+..-...|...| .- ++-|.++.|+.
T Consensus 443 ln~e~PdQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~ 496 (652)
T KOG2290|consen 443 LNPEVPDQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFL 496 (652)
T ss_pred cCCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeec
Confidence 688888999999999999999999999888886644 33 55567778876
No 19
>KOG4463|consensus
Probab=92.28 E-value=0.18 Score=47.74 Aligned_cols=59 Identities=12% Similarity=0.147 Sum_probs=50.9
Q ss_pred cCchhhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHh
Q psy17558 220 RAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSI 279 (317)
Q Consensus 220 ~~e~wRllT~~FlH~g~~HLl~Nm~~L~~~G~~lE~~~G~~r~l~iyl~~gl~gsl~~~l 279 (317)
..|+||++.+.|.-.+-.-+.+-++.++.+ +.+|+.+|+.||..+.+.++..+.+....
T Consensus 48 y~qywrlL~~qF~~~n~~e~~~~l~I~Y~f-R~~ERlLGShky~~fiv~s~~~~~l~~~i 106 (323)
T KOG4463|consen 48 YFQYWRLLMSQFAFSNTPELMFGLYILYYF-RVFERLLGSHKYSVFIVFSGTVSLLLEVI 106 (323)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHHhccccceeehhHHHHHHHHHHHH
Confidence 479999999999999999999988888777 78999999999998888888777766543
No 20
>COG5291 Predicted membrane protein [Function unknown]
Probab=91.07 E-value=0.85 Score=42.99 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=33.6
Q ss_pred CcCchhhhhhhhhcccc-HHHHHHHHHHHHHHHHHHHHhh
Q psy17558 219 HRAEVWRFMTYMLVHVG-GFHLVVNLLVQILLGIPLEMVH 257 (317)
Q Consensus 219 ~~~e~wRllT~~FlH~g-~~HLl~Nm~~L~~~G~~lE~~~ 257 (317)
++-|+||++|+..+-++ -+-.++|++.++--...||+-+
T Consensus 56 k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~ 95 (313)
T COG5291 56 KRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGC 95 (313)
T ss_pred HHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhccc
Confidence 68899999998777765 5789999999999999999843
No 21
>KOG2632|consensus
Probab=60.21 E-value=7 Score=37.05 Aligned_cols=70 Identities=14% Similarity=0.081 Sum_probs=43.0
Q ss_pred chhcccCCCCchhHHHHHHHHHHhhheeeEeeCCcccccCcccccceecCchhhHHHHHHHHHHHhhhhccccccchh
Q psy17558 50 YEDEYTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGIWENAAQDEA 127 (317)
Q Consensus 50 y~~~~~c~ppp~f~i~is~~ei~~f~y~~~~~~~~~~~~~~~~s~l~y~p~~r~e~WRf~tym~~h~g~~Hl~~~~~~ 127 (317)
+-.++-|-+|++--+++.+.-++..+-..- ...+ ..-+-+.-=++.|+||+.||.++|.+.-|+.+|..+
T Consensus 6 ~~~~~~~~~p~~ts~~~~~~~~i~lv~~~~-----~i~~---~~~l~~~~l~~~ql~RL~Ty~l~H~s~~hllfnmla 75 (258)
T KOG2632|consen 6 RVGQFWMKIPLLTSIVVVLAILIYLVSFFP-----GIVE---VLGLPSELLINWQLYRLITYALVHLSLPHLLFNMLA 75 (258)
T ss_pred cCccccccchHHHHHHHHHHHHHHHHhccc-----hhhh---HhcCCHHHhhhHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 455667777777666666555544331110 0000 011112222468999999999999999999999875
No 22
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=44.39 E-value=1.1e+02 Score=21.49 Aligned_cols=42 Identities=21% Similarity=0.180 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHH
Q psy17558 237 FHLVVNLLVQILLGIPLEMVHRW-WRVLIIYLVGVLAGSLATS 278 (317)
Q Consensus 237 ~HLl~Nm~~L~~~G~~lE~~~G~-~r~l~iyl~~gl~gsl~~~ 278 (317)
..++.+++.-..+|.-+++.+|+ ..+.++.++-|+++++-+.
T Consensus 8 ~~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~llG~~~g~~~~ 50 (55)
T PF09527_consen 8 FTMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLLGIAAGFYNV 50 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHH
Confidence 35677888888999999999998 5556666777777766554
No 23
>PF04892 VanZ: VanZ like family ; InterPro: IPR006976 This entry represents a conserved sequence region found in the VanZ protein and also several phosphotransbutyrylases. VanZ confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te). Analysis of cytoplasmic peptidoglycan precursors, accumulated in the presence of ramoplanin, showed that VanZ-mediated Te resistance does not involve incorporation of a substituent of D-alanine into the peptidoglycan precursors [].
Probab=35.79 E-value=1.9e+02 Score=23.45 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=41.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhchH-HHHHHHHHHHHHHH---HHHHhhcCC-----CceechHHHHHHHHHHHHHHH
Q psy17558 234 VGGFHLVVNLLVQILLGIPLEMVHRWW-RVLIIYLVGVLAGS---LATSITDPH-----VFLAGASGGVYALIAAHVATI 304 (317)
Q Consensus 234 ~g~~HLl~Nm~~L~~~G~~lE~~~G~~-r~l~iyl~~gl~gs---l~~~l~~p~-----~~~vGASGav~gLlga~~~~~ 304 (317)
..+.+.+.|.+....+|..+-...+.. +.....+.+.+.+. +.+..+... ....-.-|++.|.+.+....-
T Consensus 49 ~~~~~~~~hi~~f~plG~l~~~~~~~~~~~~~~~~~~~~~sl~iE~~Q~~~~~r~~d~~Dv~~n~~G~~lG~~l~~~~~~ 128 (133)
T PF04892_consen 49 NAFIDKIGHILLFFPLGFLLPLLFRRLRSWLLAILIGFLFSLFIELIQLFLPGRSFDIDDVLANTLGALLGYLLYRLIRK 128 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999888888752 43333333333332 223332211 223456666666665544443
Q ss_pred HH
Q psy17558 305 IM 306 (317)
Q Consensus 305 ~~ 306 (317)
..
T Consensus 129 ~~ 130 (133)
T PF04892_consen 129 RW 130 (133)
T ss_pred Hh
Confidence 33
No 24
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=31.09 E-value=76 Score=25.62 Aligned_cols=49 Identities=29% Similarity=0.345 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCC-CceechHHHHHHHHHHHHHHHHHhcccc
Q psy17558 263 LIIYLVGVLAGSLATSITDPH-VFLAGASGGVYALIAAHVATIIMVRSLL 311 (317)
Q Consensus 263 l~iyl~~gl~gsl~~~l~~p~-~~~vGASGav~gLlga~~~~~~~~~~~m 311 (317)
++-.++|++.|.+++.+.+.. ....=.+|++.|+-+..+...+.||++-
T Consensus 38 lIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r~~~ 87 (93)
T PF06946_consen 38 LISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNRSKK 87 (93)
T ss_pred HHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhhhhh
Confidence 345556666666666565432 2222367999999999999998887753
No 25
>PF08122 NDUF_B12: NADH-ubiquinone oxidoreductase B12 subunit family; InterPro: IPR012576 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of the B12 subunit of NADH:ubiquinone oxidoreductase proteins. The function of this subunit is unclear [].; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=30.82 E-value=19 Score=26.30 Aligned_cols=11 Identities=45% Similarity=1.353 Sum_probs=9.1
Q ss_pred cCchhhHHHHH
Q psy17558 98 NPFHRAEVWRF 108 (317)
Q Consensus 98 ~p~~r~e~WRf 108 (317)
+|=.|.||||+
T Consensus 3 DPW~RneaWRy 13 (57)
T PF08122_consen 3 DPWARNEAWRY 13 (57)
T ss_pred ChHhhhHHHhC
Confidence 46679999998
No 26
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=27.20 E-value=1.9e+02 Score=23.47 Aligned_cols=62 Identities=11% Similarity=0.116 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHH------HHHhhchHHHHHHHHHHHHHHHHHHHhhcCCCceechHHHHHHHHHHHHHH
Q psy17558 236 GFHLVVNLLVQILLGIP------LEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYALIAAHVAT 303 (317)
Q Consensus 236 ~~HLl~Nm~~L~~~G~~------lE~~~G~~r~l~iyl~~gl~gsl~~~l~~p~~~~vGASGav~gLlga~~~~ 303 (317)
+.-++..+.+++.+|.. .|..+|. |...+|++.|++.-.++...... .. .++.|++|+-...
T Consensus 3 ~~Giiigi~tFliIG~fHpiVIk~EYyfg~-~~W~~FL~~Gi~~~~~Sl~~~~~----~~-S~llgv~g~s~lW 70 (94)
T PF14898_consen 3 FTGIIIGIATFLIIGLFHPIVIKGEYYFGT-RIWPIFLLAGIACIIASLFVSNV----IW-SALLGVLGFSCLW 70 (94)
T ss_pred hhhHHHHHHHHHHHHccCeEEEEEEEecCC-CcHHHHHHHHHHHHHHHHHHcch----HH-HHHHHHHHHHHHH
Confidence 34455666677777643 4777886 67788888998887777765442 22 2456666665543
No 27
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=26.95 E-value=1.8e+02 Score=32.21 Aligned_cols=57 Identities=21% Similarity=0.415 Sum_probs=39.0
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhcCCCceechHHHHHHHHHHHHHHHHHhccccCCCCCC
Q psy17558 248 LLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYALIAAHVATIIMVRSLLKQQWDF 317 (317)
Q Consensus 248 ~~G~~lE~~~G~~r~l~iyl~~gl~gsl~~~l~~p~~~~vGASGav~gLlga~~~~~~~~~~~m~~~~~~ 317 (317)
.++..++..++.....++||+|++..++.+ |-+.|++++.+..+.+|+-=.+|.|+|
T Consensus 411 ~i~~~l~~~~~~~ni~mvFllgVlv~av~~-------------g~~pa~~aailsvl~fNyFF~ePryTf 467 (890)
T COG2205 411 AIAIQLDKFFDLANIVMLFLLGVLVVAVLT-------------GRWPAVLAALLSVLVFNYFFTEPRYTF 467 (890)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHh-------------chHHHHHHHHHHHHHHhheecCCceEE
Confidence 445578888899999999999988876654 334556666666666666555555543
No 28
>PF14241 DUF4341: Domain of unknown function (DUF4341)
Probab=23.60 E-value=1.2e+02 Score=22.28 Aligned_cols=34 Identities=26% Similarity=0.296 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhhcCCCceechHHHHHHHHHH
Q psy17558 266 YLVGVLAGSLATSITDPHVFLAGASGGVYALIAA 299 (317)
Q Consensus 266 yl~~gl~gsl~~~l~~p~~~~vGASGav~gLlga 299 (317)
++.|.+.|..+..++.-+-...|+||.+.+++..
T Consensus 6 l~GG~lIGla~~~ll~~~Gri~GiSGil~~~~~~ 39 (62)
T PF14241_consen 6 LIGGLLIGLAASLLLLLNGRIAGISGILSGLLSP 39 (62)
T ss_pred HHHHHHHHHHHHHHHHHcCcceehHHHHHHHhCC
Confidence 3444445554555544445578999999888765
No 29
>COG3952 Predicted membrane protein [Function unknown]
Probab=23.59 E-value=4.3e+02 Score=21.95 Aligned_cols=91 Identities=11% Similarity=0.004 Sum_probs=50.7
Q ss_pred hhhhhhcccc-HHHHHHHHHHHHHHHHHHHH------hhchHHHHHHHHHHHHHHHHHHHhhcCCCceechHHHHHHHHH
Q psy17558 226 FMTYMLVHVG-GFHLVVNLLVQILLGIPLEM------VHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYALIA 298 (317)
Q Consensus 226 llT~~FlH~g-~~HLl~Nm~~L~~~G~~lE~------~~G~~r~l~iyl~~gl~gsl~~~l~~p~~~~vGASGav~gLlg 298 (317)
++--.+.|+. .+||++=+-.+++-|+.+-+ .-.+.-=.+++..|.++|.+.-+.+-...-.|+.-|-..|++.
T Consensus 14 ~lh~~~~~~~l~W~LiG~~g~~lFt~Rf~VQw~~se~a~rsv~P~~FW~~sllGg~l~L~Yfi~~~DpV~Vl~~~~glF~ 93 (113)
T COG3952 14 WLHLNLPKAFLSWKLIGFSGQLLFTGRFVVQWLASEHANRSVIPVLFWYFSLLGGLLLLSYFIRRQDPVFVLGQACGLFI 93 (113)
T ss_pred hhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhhHHHHHHHHHhcchHHHHHHhhhHHH
Confidence 3333444444 45566555555555554433 3233333566777888887776554333345677777777777
Q ss_pred HHHHHHHHhccccCCCCC
Q psy17558 299 AHVATIIMVRSLLKQQWD 316 (317)
Q Consensus 299 a~~~~~~~~~~~m~~~~~ 316 (317)
+..-.-+..+++-..|++
T Consensus 94 ~l~nL~L~~ker~~~~~~ 111 (113)
T COG3952 94 YLRNLWLIIKERRWKPTK 111 (113)
T ss_pred HHHHHHHHHHHhcccCcC
Confidence 766555555555555543
No 30
>TIGR02854 spore_II_GA sigma-E processing peptidase SpoIIGA. Members of this protein family are the stage II sporulation protein SpoIIGA. This protein acts as an activating protease for Sigma-E, one of several specialized sigma factors of the sporulation process in Bacillus subtilis and related endospore-forming bacteria.
Probab=23.49 E-value=3.3e+02 Score=25.98 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q psy17558 237 FHLVVNLLVQILLGIPLEMVHRWWRVLIIYL 267 (317)
Q Consensus 237 ~HLl~Nm~~L~~~G~~lE~~~G~~r~l~iyl 267 (317)
..+++|.+.|+..+..+-...+.+|.++-=+
T Consensus 11 ~Nf~~d~~LL~~t~~~lk~~~~~~Rll~ga~ 41 (288)
T TIGR02854 11 ENFIIDYFLLYLTARTLKDKVSQWRLLLAAL 41 (288)
T ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 5678999999999999999888888754333
No 31
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=21.77 E-value=1.7e+02 Score=21.27 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCceechHHHHHHHHHHHHHHHHHhc
Q psy17558 265 IYLVGVLAGSLATSITDPHVFLAGASGGVYALIAAHVATIIMVR 308 (317)
Q Consensus 265 iyl~~gl~gsl~~~l~~p~~~~vGASGav~gLlga~~~~~~~~~ 308 (317)
...++=+++++...-+++ ...+.-|+++|++.+.+...+.+.
T Consensus 14 ~~vvgyI~ssL~~~~~n~--~~~~Ii~vi~~i~~~~~~~~i~~~ 55 (57)
T PF11151_consen 14 GEVVGYIGSSLTGVTYNF--TTAAIIAVIFGIIVANIIAVIPKK 55 (57)
T ss_pred HHHHHHHHHHHhCCCCCh--HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 333344444444443333 245777788888888777765543
No 32
>PRK10490 sensor protein KdpD; Provisional
Probab=20.37 E-value=3.4e+02 Score=30.11 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=14.5
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHH
Q psy17558 250 GIPLEMVHRWWRVLIIYLVGVLAGSL 275 (317)
Q Consensus 250 G~~lE~~~G~~r~l~iyl~~gl~gsl 275 (317)
+..+...++.....++|+++++..++
T Consensus 416 ~~~l~~~l~~~ni~mlyll~Vll~A~ 441 (895)
T PRK10490 416 AMQWLPAFDAANLVMLYLLGVVVVAL 441 (895)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHHHH
Confidence 33444455666666666666554443
Done!