Query psy17558
Match_columns 317
No_of_seqs 292 out of 1508
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 16:37:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17558.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17558hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nr9_A Protein GLPG homolog; i 99.9 3.5E-23 1.2E-27 184.4 11.7 129 172-308 4-134 (196)
2 2xov_A Rhomboid protease GLPG; 99.9 1.9E-22 6.6E-27 177.5 12.2 125 176-308 3-129 (181)
3 2nr9_A Protein GLPG homolog; i 96.7 0.00013 4.5E-09 64.2 -2.2 81 58-145 8-95 (196)
4 2xov_A Rhomboid protease GLPG; 95.6 0.00068 2.3E-08 58.8 -2.9 36 93-128 31-68 (181)
5 1bt3_A Protein (catechol oxida 9.5 82 0.0028 29.6 0.7 8 54-61 25-32 (345)
6 2lbg_A Major prion protein; co 8.1 3.7E+02 0.013 15.9 2.9 20 287-306 6-25 (27)
7 3u4z_A Telomerase-associated p 7.1 1.7E+02 0.006 22.0 1.4 27 120-146 43-74 (109)
8 2p3x_A Polyphenol oxidase, chl 6.7 1.3E+02 0.0045 28.1 0.7 8 54-61 23-30 (339)
9 3kcu_A Probable formate transp 5.8 4.9E+02 0.017 23.5 4.1 27 226-253 197-223 (285)
10 3kly_A Putative formate transp 5.8 4.9E+02 0.017 23.4 4.1 50 226-276 196-263 (280)
No 1
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.89 E-value=3.5e-23 Score=184.45 Aligned_cols=129 Identities=19% Similarity=0.367 Sum_probs=104.2
Q ss_pred cccCCCCeehhHHHHHHhhhhHHhhhhccccccccccccccccccCC--CcCchhhhhhhhhccccHHHHHHHHHHHHHH
Q psy17558 172 YTCIPPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPF--HRAEVWRFMTYMLVHVGGFHLVVNLLVQILL 249 (317)
Q Consensus 172 ~~~~~ppv~~~lI~ii~i~vFi~~~~~~~~~~~~~g~~~~~~~~~p~--~~~e~wRllT~~FlH~g~~HLl~Nm~~L~~~ 249 (317)
.+.+.+|++.. ++++|+++|+++...+.. .....+.+.|. .++|+||++|++|+|.|+.|+++||+.++.+
T Consensus 4 ~~~~~~pvt~~-li~~~v~vfll~~~~~~~------~~~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~ 76 (196)
T 2nr9_A 4 FLAQQGKITLI-LTALCVLIYIAQQLGFED------DIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIF 76 (196)
T ss_dssp CCTTSCHHHHH-HHHHHHHHHHHHHTTCHH------HHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHH
T ss_pred cccccccHHHH-HHHHHHHHHHHHHHcCcH------HHHHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44556676555 457899999987654211 11223345554 5789999999999999999999999999999
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHhhcCCCceechHHHHHHHHHHHHHHHHHhc
Q psy17558 250 GIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYALIAAHVATIIMVR 308 (317)
Q Consensus 250 G~~lE~~~G~~r~l~iyl~~gl~gsl~~~l~~p~~~~vGASGav~gLlga~~~~~~~~~ 308 (317)
|..+|+.+|++|++.+|++++++|++++.++++.. ++||||++||++|+++.....+.
T Consensus 77 G~~lE~~~G~~~~l~~yl~~~~~~~l~~~~~~~~~-~vGaSGai~gl~g~~~~~~~~~~ 134 (196)
T 2nr9_A 77 GGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPA-FFGLSGVVYAVLGYVFIRDKLNH 134 (196)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC-CCCSHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHChHHHHHHHHHHHHHHHHHHHHhcCCC-eeeHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999887764 89999999999998876544443
No 2
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.88 E-value=1.9e-22 Score=177.46 Aligned_cols=125 Identities=22% Similarity=0.234 Sum_probs=101.6
Q ss_pred CCCeehhHHHHHHhhhhHHhhhhccccccccccccccccccCC--CcCchhhhhhhhhccccHHHHHHHHHHHHHHHHHH
Q psy17558 176 PPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPF--HRAEVWRFMTYMLVHVGGFHLVVNLLVQILLGIPL 253 (317)
Q Consensus 176 ~ppv~~~lI~ii~i~vFi~~~~~~~~~~~~~g~~~~~~~~~p~--~~~e~wRllT~~FlH~g~~HLl~Nm~~L~~~G~~l 253 (317)
.||++.. ++++|+++|+.+...+.. .....+.++|. .++|+||++|++|+|.|+.|+++||+.++.+|..+
T Consensus 3 ~~pvt~~-li~~~v~vf~~~~~~~~~------~~~~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~ 75 (181)
T 2xov_A 3 AGPVTWV-MMIACVVVFIAMQILGDQ------EVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAV 75 (181)
T ss_dssp CCHHHHH-HHHHHHHHHHHHHHHCHH------HHHHHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHH-HHHHHHHHHHHHHHhCcH------HHHHhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 4565555 558899999987764321 11223344554 57899999999999999999999999999999999
Q ss_pred HHhhchHHHHHHHHHHHHHHHHHHHhhcCCCceechHHHHHHHHHHHHHHHHHhc
Q psy17558 254 EMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYALIAAHVATIIMVR 308 (317)
Q Consensus 254 E~~~G~~r~l~iyl~~gl~gsl~~~l~~p~~~~vGASGav~gLlga~~~~~~~~~ 308 (317)
|+.+|+.|++.+|++++++|++++.++++.. ++||||+++|++|+++.....+.
T Consensus 76 E~~~G~~~fl~~yl~~~i~~~l~~~~~~~~~-~vGaSGai~gl~g~~~~~~~~~p 129 (181)
T 2xov_A 76 EKRLGSGKLIVITLISALLSGYVQQKFSGPW-FGGLSGVVYALMGYVWLRGERDP 129 (181)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC-CCCSHHHHHHHHHHHHHHHHHCG
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHhcCCC-ceeHHHHHHHHHHHHHHHHhhCc
Confidence 9999999999999999999999999887654 89999999999998876544443
No 3
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=96.66 E-value=0.00013 Score=64.20 Aligned_cols=81 Identities=17% Similarity=0.253 Sum_probs=50.8
Q ss_pred CCchhHHHHHHHHHHhhheeeEeeCCcccccCcccccceecCc--hhhHHHHHHHHHHHhhhhccccccchhhhh----h
Q psy17558 58 PPPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPF--HRAEVWRFMTYMLVHVGIWENAAQDEADVV----V 131 (317)
Q Consensus 58 ppp~f~i~is~~ei~~f~y~~~~~~~~~~~~~~~~s~l~y~p~--~r~e~WRf~tym~~h~g~~Hl~~~~~~~~~----l 131 (317)
.||+-..+| ++.+++|+..... .. ..+...+.+.|+ .+.|.||++|++|+|.|+.|+..|.+.... +
T Consensus 8 ~~pvt~~li-~~~v~vfll~~~~--~~----~~~~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~l 80 (196)
T 2nr9_A 8 QGKITLILT-ALCVLIYIAQQLG--FE----DDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMI 80 (196)
T ss_dssp SCHHHHHHH-HHHHHHHHHHHTT--CH----HHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHH-HHHHHHHHHHHHc--Cc----HHHHHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 366644433 3456666643211 00 012244567776 678999999999999999999999987544 4
Q ss_pred hcc-ccccccccccc
Q psy17558 132 IRK-PKWNRLNSYVR 145 (317)
Q Consensus 132 ~~~-~kwrr~~~Yv~ 145 (317)
|.. +++|-...|+.
T Consensus 81 E~~~G~~~~l~~yl~ 95 (196)
T 2nr9_A 81 ERTFGSVKLLMLYVV 95 (196)
T ss_dssp HHHHCHHHHHHHHHH
T ss_pred HHHHChHHHHHHHHH
Confidence 433 56665555543
No 4
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=95.65 E-value=0.00068 Score=58.78 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=30.4
Q ss_pred ccceecCc--hhhHHHHHHHHHHHhhhhccccccchhh
Q psy17558 93 KTLIYNPF--HRAEVWRFMTYMLVHVGIWENAAQDEAD 128 (317)
Q Consensus 93 s~l~y~p~--~r~e~WRf~tym~~h~g~~Hl~~~~~~~ 128 (317)
..+.++|+ ++.|.||++|++|+|.|+.|+..|....
T Consensus 31 ~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l 68 (181)
T 2xov_A 31 LWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWW 68 (181)
T ss_dssp HHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHH
T ss_pred HhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHH
Confidence 34556675 6789999999999999999999999765
No 5
>1bt3_A Protein (catechol oxidase); dicopper enzyme, oxidoreductase; 2.50A {Ipomoea batatas} SCOP: a.86.1.2 PDB: 1bt2_A 1bt1_A 1bug_A*
Probab=9.53 E-value=82 Score=29.58 Aligned_cols=8 Identities=38% Similarity=0.899 Sum_probs=7.0
Q ss_pred ccCCCCch
Q psy17558 54 YTCIPPPV 61 (317)
Q Consensus 54 ~~c~ppp~ 61 (317)
++|||||-
T Consensus 25 ~~~cp~~~ 32 (345)
T 1bt3_A 25 DNCCPPVA 32 (345)
T ss_dssp SCCCCCCC
T ss_pred cCCCCCCC
Confidence 88999886
No 6
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=8.08 E-value=3.7e+02 Score=15.94 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=12.5
Q ss_pred echHHHHHHHHHHHHHHHHH
Q psy17558 287 AGASGGVYALIAAHVATIIM 306 (317)
Q Consensus 287 vGASGav~gLlga~~~~~~~ 306 (317)
.+|.|++.|=+|+++.-..+
T Consensus 6 a~AAGaVvGglGgy~lg~~m 25 (27)
T 2lbg_A 6 AAAAGAVVGGLGGYMLGSAM 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHh
Confidence 35667777777766654443
No 7
>3u4z_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.30A {Tetrahymena thermophila}
Probab=7.09 E-value=1.7e+02 Score=22.00 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=20.1
Q ss_pred cccccchhhhhhhcc-----cccccccccccc
Q psy17558 120 ENAAQDEADVVVIRK-----PKWNRLNSYVRK 146 (317)
Q Consensus 120 Hl~~~~~~~~~l~~~-----~kwrr~~~Yv~~ 146 (317)
++.-.+|.++|.|.+ .+|.-.+.+++.
T Consensus 43 elkvvifpdlcyewrdkfsinkwyyfnefvrq 74 (109)
T 3u4z_A 43 ELKVVIFPDLCYEWRDKFSINKWYYFNEFVRQ 74 (109)
T ss_dssp CEEEEECTTHHHHHTTTCCTTCEEEEEEEEEE
T ss_pred eeEEEEchhHHHHHHhhcchhhhhhHHHHHHH
Confidence 455678889998855 778888877764
No 8
>2p3x_A Polyphenol oxidase, chloroplast; grenache grapes, oxidoreductase; 2.20A {Vitis vinifera}
Probab=6.74 E-value=1.3e+02 Score=28.09 Aligned_cols=8 Identities=38% Similarity=0.933 Sum_probs=7.0
Q ss_pred ccCCCCch
Q psy17558 54 YTCIPPPV 61 (317)
Q Consensus 54 ~~c~ppp~ 61 (317)
.+|||||-
T Consensus 23 ~~ccp~~~ 30 (339)
T 2p3x_A 23 TNCCPPVT 30 (339)
T ss_dssp CCCCCCCC
T ss_pred cCCCCCCC
Confidence 88999876
No 9
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=5.81 E-value=4.9e+02 Score=23.54 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=19.8
Q ss_pred hhhhhhccccHHHHHHHHHHHHHHHHHH
Q psy17558 226 FMTYMLVHVGGFHLVVNLLVQILLGIPL 253 (317)
Q Consensus 226 llT~~FlH~g~~HLl~Nm~~L~~~G~~l 253 (317)
+.+.+|+=.|+.|.+.||+.+ ..|...
T Consensus 197 ~pi~~Fv~~GfEH~VANm~~i-p~gi~~ 223 (285)
T 3kcu_A 197 LPVAMFVASGFEHSIANMFMI-PMGIVI 223 (285)
T ss_dssp HHHHHHHHTTCCCHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHcCcchhhhhHHHH-HHHHHh
Confidence 337788899999999999755 344433
No 10
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A*
Probab=5.76 E-value=4.9e+02 Score=23.44 Aligned_cols=50 Identities=20% Similarity=0.306 Sum_probs=0.0
Q ss_pred hhhhhhccccHHHHHHHHHHHHHHHHHHH------------------HhhchHHHHHHHHHHHHHHHHH
Q psy17558 226 FMTYMLVHVGGFHLVVNLLVQILLGIPLE------------------MVHRWWRVLIIYLVGVLAGSLA 276 (317)
Q Consensus 226 llT~~FlH~g~~HLl~Nm~~L~~~G~~lE------------------~~~G~~r~l~iyl~~gl~gsl~ 276 (317)
+.+.+|+=.|+.|.+.|| .++..|.... ..+....++.--++-+..|++.
T Consensus 196 ~pi~~Fv~~GfEH~VANm-~~ip~gi~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~NlipvtlGNii 263 (280)
T 3kly_A 196 LPVAMFVSSGFEHCIANM-FQVPMAIGIKYFAPESFWAMTGANIAQYADLNFVNFIVNNLIPVTLGNIV 263 (280)
T ss_dssp HHHHHHHHTTCCCHHHHH-HHHHHHHHHHHHCCHHHHHHHTCCGGGGTTCSHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHhhH-HHHHHHHHhccccchHHHHhhcccccccCCccHHHHHHHHHHHHHHHHHH
Done!