RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17558
         (317 letters)



>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
          Length = 180

 Score = 57.4 bits (138), Expect = 1e-10
 Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 6/135 (4%)

Query: 177 PPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGG 236
            PV  + +    +  F+   ++      L         ++P  + E WR+ T+ L+H   
Sbjct: 4   GPVTWVMM-IACVVVFIAMQILGDQEVMLWLA----WPFDPTLKFEFWRYFTHALMHFSL 58

Query: 237 FHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYAL 296
            H++ NLL    LG  +E      ++++I L+  L             F  G SG VYAL
Sbjct: 59  MHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWF-GGLSGVVYAL 117

Query: 297 IAAHVATIIMVRSLL 311
           +              
Sbjct: 118 MGYVWLRGERDPQSG 132



 Score = 27.8 bits (61), Expect = 1.4
 Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 59  PPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGI 118
            PV  + +    +  F+   ++      L         ++P  + E WR+ T+ L+H  +
Sbjct: 4   GPVTWVMM-IACVVVFIAMQILGDQEVMLWLA----WPFDPTLKFEFWRYFTHALMHFSL 58

Query: 119 W 119
            
Sbjct: 59  M 59


>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus
           influenzae [TaxId: 727]}
          Length = 189

 Score = 51.7 bits (123), Expect = 1e-08
 Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 6/135 (4%)

Query: 177 PPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGG 236
             + +I   A+ +  ++   +   D                   +EVWR++++ LVH+  
Sbjct: 6   GKITLILT-ALCVLIYIAQQLGFEDDIMY----LMHYPAYEEQDSEVWRYISHTLVHLSN 60

Query: 237 FHLVVNLLVQILLGIPLEMVHRWWRVLIIYLVGVLAGSLATSITDPHVFLAGASGGVYAL 296
            H++ NL    + G  +E      ++L++Y+V         +      F  G SG VYA+
Sbjct: 61  LHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPAFF-GLSGVVYAV 119

Query: 297 IAAHVATIIMVRSLL 311
           +        +   L 
Sbjct: 120 LGYVFIRDKLNHHLF 134



 Score = 25.9 bits (56), Expect = 6.1
 Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 59  PPVIMIFISAVEIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGI 118
             + +I   A+ +  ++   +   D                   +EVWR++++ LVH+  
Sbjct: 6   GKITLILT-ALCVLIYIAQQLGFEDDIMY----LMHYPAYEEQDSEVWRYISHTLVHLSN 60

Query: 119 W 119
            
Sbjct: 61  L 61


>d1su7a_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
           {Carboxydothermus hydrogenoformans [TaxId: 129958]}
          Length = 633

 Score = 26.3 bits (58), Expect = 5.8
 Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 6/96 (6%)

Query: 188 EIGFFLYDAMIVGDTYSLRGPMAKTLIYNPFHRAEVWRFMTYMLVHVGGFHLVVNLLVQI 247
           +I   +  A +  D +    P+       P  R +V      +    G  H +  ++ + 
Sbjct: 138 DIALEVAKAAL-ADFHEKDTPVLWVTTVLPPSRVKVLSAHGLIP--AGIDHEIAEIMHRT 194

Query: 248 LLGI---PLEMVHRWWRVLIIYLVGVLAGSLATSIT 280
            +G       ++    R  +  L G   G+    I 
Sbjct: 195 SMGCDADAQNLLLGGLRCSLADLAGCYMGTDLADIL 230


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.143    0.454 

Gapped
Lambda     K      H
   0.267   0.0695    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,290,261
Number of extensions: 62323
Number of successful extensions: 190
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 11
Length of query: 317
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,240,546
Effective search space: 287806672
Effective search space used: 287806672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.3 bits)