Query psy17564
Match_columns 109
No_of_seqs 103 out of 159
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 16:48:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17564.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17564hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l09_A ASR4154 protein; proto- 61.9 6.9 0.00024 24.1 2.9 36 4-39 7-42 (62)
2 2kru_A Light-independent proto 61.2 6.8 0.00023 24.2 2.8 36 4-39 8-43 (63)
3 1wot_A Putative minimal nucleo 59.9 6.8 0.00023 24.9 2.7 35 11-45 2-37 (98)
4 2cly_C ATP synthase coupling f 58.4 6.8 0.00023 25.2 2.5 30 14-43 33-63 (77)
5 3kxy_A Exoenzyme S synthesis p 54.0 5.4 0.00018 28.1 1.5 25 15-39 1-25 (133)
6 1es5_A DD-transpeptidase; peni 37.1 59 0.002 23.9 5.1 49 19-67 119-167 (262)
7 1ghp_A Beta-lactamase, penicil 32.3 60 0.002 23.0 4.3 46 22-67 113-164 (258)
8 1bue_A Protein (imipenem-hydro 31.6 60 0.002 23.0 4.2 45 23-67 121-171 (265)
9 2wk0_A Beta-lactamase; hydrola 29.3 73 0.0025 22.5 4.4 46 22-67 117-168 (265)
10 1alq_A CP254 beta-lactamase; h 26.6 81 0.0028 23.1 4.3 46 22-67 158-209 (266)
11 1iio_A Conserved hypothetical 25.1 25 0.00086 22.8 1.1 18 11-28 2-19 (84)
12 1hzo_A Beta-lactamase; mixed a 24.9 96 0.0033 22.0 4.4 46 22-67 121-172 (271)
13 3vp5_A Transcriptional regulat 24.9 51 0.0017 21.8 2.7 46 7-52 3-59 (189)
14 4ay1_A Chitinase-3-like protei 24.8 54 0.0018 25.0 3.1 32 8-39 84-117 (365)
15 1bsg_A Beta lactamase, penicil 24.5 95 0.0032 21.7 4.2 45 23-67 123-173 (266)
16 3tek_A Thermodbp-single strand 24.1 45 0.0016 23.5 2.3 22 14-35 82-111 (148)
17 1ylx_A Hypothetical protein AP 23.6 38 0.0013 22.8 1.7 23 17-39 12-34 (103)
18 3poh_A Endo-beta-N-acetylgluco 23.6 53 0.0018 27.0 3.0 31 9-39 256-286 (451)
19 2qpn_A Beta-lactamase GES-1; A 23.1 1.1E+02 0.0037 22.0 4.3 46 22-67 140-191 (287)
20 2kdr_X NS4B, P27, non-structur 23.0 26 0.00089 18.4 0.7 14 55-68 1-14 (28)
21 1h3o_A Transcription initiatio 22.7 40 0.0014 21.3 1.6 20 19-38 6-25 (75)
22 1n9b_A Penicillinase, beta-lac 22.6 1.2E+02 0.004 21.5 4.4 46 22-67 120-171 (265)
23 2j9o_A TLL2115 protein; penici 21.9 1.2E+02 0.004 22.2 4.4 45 23-67 138-182 (298)
24 1g6a_A Beta-lactamase PSE-4; c 21.8 1.2E+02 0.0041 21.3 4.3 46 22-67 123-174 (271)
25 1w7f_A Beta-lactamase; hydrola 21.5 1.1E+02 0.0038 22.4 4.2 46 22-67 159-210 (307)
26 1lre_A Receptor-associated pro 21.4 45 0.0016 21.5 1.7 17 20-36 60-76 (81)
27 3c5a_A Class A carbapenemase K 21.2 1.3E+02 0.0044 21.0 4.4 46 22-67 119-170 (264)
28 2i46_A Adrenocortical dysplasi 20.8 33 0.0011 24.6 1.1 20 12-31 136-155 (161)
No 1
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=61.85 E-value=6.9 Score=24.09 Aligned_cols=36 Identities=11% Similarity=0.160 Sum_probs=31.0
Q ss_pred hhhhhchhcCCHHHHhHHHHHHHHHhhhCCCCCccc
Q psy17564 4 LQSKQLYNSMDLSIRRELPTMLSKMAADHQLDELIM 39 (109)
Q Consensus 4 ~q~kQ~y~~Md~~lK~~L~~~le~~a~~ygL~dl~~ 39 (109)
.+|++...-.+.=+|...+..+|++|.+-|+..|+-
T Consensus 7 ~EAe~~LkkIP~FVR~kvrr~tE~~Are~G~~~IT~ 42 (62)
T 2l09_A 7 SEAKTKLKNIPFFARSQAKARIEQLARQAEQDIVTP 42 (62)
T ss_dssp HHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCSEECH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCeEcH
Confidence 366777777788899999999999999999999875
No 2
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=61.22 E-value=6.8 Score=24.22 Aligned_cols=36 Identities=6% Similarity=0.135 Sum_probs=31.4
Q ss_pred hhhhhchhcCCHHHHhHHHHHHHHHhhhCCCCCccc
Q psy17564 4 LQSKQLYNSMDLSIRRELPTMLSKMAADHQLDELIM 39 (109)
Q Consensus 4 ~q~kQ~y~~Md~~lK~~L~~~le~~a~~ygL~dl~~ 39 (109)
.+|++...-.+.=+|...+..+|++|.+-|+..|+-
T Consensus 8 ~EAe~~LkkIP~FVR~kvrr~tE~~Are~G~~~IT~ 43 (63)
T 2kru_A 8 AEAEKMLGKVPFFVRKKVRKNTDNYAREIGEPVVTA 43 (63)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHHTCSEECH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCeEcH
Confidence 467777777888899999999999999999999875
No 3
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=59.95 E-value=6.8 Score=24.89 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=27.7
Q ss_pred hcCCHHHHhHHHHHHHHHhhhCCCCCc-ccchhhee
Q psy17564 11 NSMDLSIRRELPTMLSKMAADHQLDEL-IMPSFTLL 45 (109)
Q Consensus 11 ~~Md~~lK~~L~~~le~~a~~ygL~dl-~~~SF~r~ 45 (109)
++|+.+.-+.+++.+...+.+||...+ .|+|+.|-
T Consensus 2 ~~m~~~~l~~l~~~i~~l~~~~~v~~v~LFGS~arG 37 (98)
T 1wot_A 2 SHMDLETLRARREAVLSLCARHGAVRVRVFGSVARG 37 (98)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTCSSCEECSHHHHT
T ss_pred CcCCHHHHHHHHHHHHHHHHHcCCcEEEEEccccCC
Confidence 357777788899999999999998655 47888763
No 4
>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.45.1.1 PDB: 1vzs_A 2wss_V*
Probab=58.35 E-value=6.8 Score=25.23 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=25.2
Q ss_pred CHHHHhHHHHHHHHHhhhCCCCCcc-cchhh
Q psy17564 14 DLSIRRELPTMLSKMAADHQLDELI-MPSFT 43 (109)
Q Consensus 14 d~~lK~~L~~~le~~a~~ygL~dl~-~~SF~ 43 (109)
++++.+.|.+.|++.+..||..|+. ||.|.
T Consensus 33 ~Pe~~kel~~el~kL~~~YGggDm~kFP~Fk 63 (77)
T 2cly_C 33 GPEYQQDLDRELFKLKQMYGKADMNTFPNFT 63 (77)
T ss_dssp CTHHHHHHHHHHHHHHHHHCSSCTTSCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHCcchHhhCCCCC
Confidence 5789999999999999999998763 56653
No 5
>3kxy_A Exoenzyme S synthesis protein C; type-three secretion system, TTSS, T3SS, chaperone-effector chaperone, effector, chaperone-transcription inhibitor COMP; 2.80A {Pseudomonas aeruginosa}
Probab=53.99 E-value=5.4 Score=28.14 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=22.1
Q ss_pred HHHHhHHHHHHHHHhhhCCCCCccc
Q psy17564 15 LSIRRELPTMLSKMAADHQLDELIM 39 (109)
Q Consensus 15 ~~lK~~L~~~le~~a~~ygL~dl~~ 39 (109)
|+.|..+.+.|.++|.+|||+.+..
T Consensus 1 M~~~~~Vn~vL~qFa~qigLP~l~L 25 (133)
T 3kxy_A 1 MDLTSKVNRLLAEFAGRIGLPSLSL 25 (133)
T ss_dssp CCHHHHHHHHHHHHHHHHTCSCCCC
T ss_pred CCHHHHHHHHHHHHHHHcCCCceeE
Confidence 4578899999999999999998766
No 6
>1es5_A DD-transpeptidase; penicillin-binding, serine peptidase, BET lactamase, hydrolase carboxypeptidase, hydrolase; 1.40A {Streptomyces SP} SCOP: e.3.1.1 PDB: 1skf_A 1es2_A 1j9m_A 1esi_A 1es3_A 1es4_A
Probab=37.06 E-value=59 Score=23.90 Aligned_cols=49 Identities=10% Similarity=0.073 Sum_probs=37.0
Q ss_pred hHHHHHHHHHhhhCCCCCcccchhheeecCCCccchhhHHHHHHHHhcc
Q psy17564 19 RELPTMLSKMAADHQLDELIMPSFTLLHGYRTKIQASDYVYAMLALLES 67 (109)
Q Consensus 19 ~~L~~~le~~a~~ygL~dl~~~SF~r~~Gy~~~lSA~D~vyav~ALLE~ 67 (109)
+.+.+.|.+.+.+.|+.+-.|..-.--.+-...-+|.|++.-+.+++..
T Consensus 119 ~~F~~~mn~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dma~l~~~~~~~ 167 (262)
T 1es5_A 119 KSFIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRDLTKIASSAMKN 167 (262)
T ss_dssp HHHHHHHHHHHHHTTCSSCBCSSSSCCSCTTCBBCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCCCEecCCcCCCCCCCEECHHHHHHHHHHHhcC
Confidence 5677788889999999987664332222245678999999999999984
No 7
>1ghp_A Beta-lactamase, penicillinase; hydrolase, antibiotic resistance, beta-lactam hydrolysis, benzylpenicillin, cephaloridine; HET: PNM; 1.76A {Staphylococcus aureus} SCOP: e.3.1.1 PDB: 1ghi_A* 1ghm_A* 1kgf_A 1kge_A 1ome_A 1kgg_A 1dja_A 3blm_A 1blh_A* 1blc_A 1djc_A 1djb_A 1blp_A 1pio_A
Probab=32.28 E-value=60 Score=22.98 Aligned_cols=46 Identities=2% Similarity=-0.029 Sum_probs=34.2
Q ss_pred HHHHHHHhhhCCCCCcccchhhee------ecCCCccchhhHHHHHHHHhcc
Q psy17564 22 PTMLSKMAADHQLDELIMPSFTLL------HGYRTKIQASDYVYAMLALLES 67 (109)
Q Consensus 22 ~~~le~~a~~ygL~dl~~~SF~r~------~Gy~~~lSA~D~vyav~ALLE~ 67 (109)
.+.+.+++.++|+.+-.+...... .+.....+|.|++..+.+|+..
T Consensus 113 ~~~~~~~~~~lG~~~t~~~~~~~~~~~~~~~~~~~~~T~~d~a~~~~~l~~~ 164 (258)
T 1ghp_A 113 IKKVKQRLKELGDKVTNPVRYDIELQYYSPKSKKDTSTPAAFGKTLNKLIAN 164 (258)
T ss_dssp HHHHHHHHHHTTCCSCBCCSCTTGGGCCCTTCCTTEECHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCceecCCCChhhcccCCCCCCCccCHHHHHHHHHHHHcC
Confidence 456888999999998655432211 1466788999999999999875
No 8
>1bue_A Protein (imipenem-hydrolysing beta-lactamase); hydrolase, antibiotic resistance, class A carbapenemase; 1.64A {Enterobacter cloacae} SCOP: e.3.1.1 PDB: 1bul_A* 1dy6_A
Probab=31.56 E-value=60 Score=23.02 Aligned_cols=45 Identities=7% Similarity=0.033 Sum_probs=33.2
Q ss_pred HHHHHHhhhCCCCCcccchhh----e--eecCCCccchhhHHHHHHHHhcc
Q psy17564 23 TMLSKMAADHQLDELIMPSFT----L--LHGYRTKIQASDYVYAMLALLES 67 (109)
Q Consensus 23 ~~le~~a~~ygL~dl~~~SF~----r--~~Gy~~~lSA~D~vyav~ALLE~ 67 (109)
+.+.+++.++|+.+-.+.... . ..+.....+|.|++..+.+|+..
T Consensus 121 ~~~~~~~~~lG~~~t~~~~~~~~~~~~~~~~~~~~~T~~d~a~~~~~l~~~ 171 (265)
T 1bue_A 121 EGMTKFMRSIGDEDFRLDRWELDLNTAIPGDERDTSTPAAVAKSLKTLALG 171 (265)
T ss_dssp HHHHHHHHHTTCSSCBCCSCTTGGGCCCTTCCTTEECHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCcccccCcchhhccccCCCCCCcCCHHHHHHHHHHHHcC
Confidence 568888899999986554321 1 12345788999999999999875
No 9
>2wk0_A Beta-lactamase; hydrolase, iodopenicillanate, antibiotic resistance; HET: BIY CIT; 1.65A {Bacillus licheniformis} PDB: 2x71_A* 3b3x_A* 1i2s_A* 1i2w_A* 2y91_A* 2blm_A 4blm_A 3sh9_A* 3sh7_A* 3sh8_A* 3ly3_A 3kgo_A* 3ly4_A* 3kgm_A* 3kgn_A* 3m2j_A* 3m2k_A* 3soi_A* 1mbl_A
Probab=29.34 E-value=73 Score=22.54 Aligned_cols=46 Identities=13% Similarity=-0.015 Sum_probs=33.9
Q ss_pred HHHHHHHhhhCCCCCcccchhhe------eecCCCccchhhHHHHHHHHhcc
Q psy17564 22 PTMLSKMAADHQLDELIMPSFTL------LHGYRTKIQASDYVYAMLALLES 67 (109)
Q Consensus 22 ~~~le~~a~~ygL~dl~~~SF~r------~~Gy~~~lSA~D~vyav~ALLE~ 67 (109)
.+.+.+++.++|+.+-.+..... ..+.....||.|++..+.+|+..
T Consensus 117 ~~~~~~~~~~lG~~~t~~~~~~~~~~~~~~~~~~~~~T~~dla~~~~~l~~~ 168 (265)
T 2wk0_A 117 PESLKKELRKIGDEVTNPERFEPELNEVNPGETQDTSTARALATSLQAFALE 168 (265)
T ss_dssp HHHHHHHHHHTTCCSCCCCCCTTGGGCCCTTCCTTEEEHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCCceeecCcchhhccccCCCCCCcCCHHHHHHHHHHHHcC
Confidence 35788889999999865543321 11346789999999999999874
No 10
>1alq_A CP254 beta-lactamase; hydrolase, circular permuted, antibiotic resistance; 1.80A {Staphylococcus aureus} SCOP: e.3.1.1
Probab=26.62 E-value=81 Score=23.12 Aligned_cols=46 Identities=2% Similarity=-0.026 Sum_probs=34.8
Q ss_pred HHHHHHHhhhCCCCCcccchhhe------eecCCCccchhhHHHHHHHHhcc
Q psy17564 22 PTMLSKMAADHQLDELIMPSFTL------LHGYRTKIQASDYVYAMLALLES 67 (109)
Q Consensus 22 ~~~le~~a~~ygL~dl~~~SF~r------~~Gy~~~lSA~D~vyav~ALLE~ 67 (109)
.+.+.+++.++|+.+-.+..... ..+.....+|.|++..+.+|+..
T Consensus 158 ~~~~n~~~~~lG~~~T~~~~~~~~l~~~~~~~~~~~tTa~d~a~l~~~l~~g 209 (266)
T 1alq_A 158 IKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTPAAFGKTLNKLIAN 209 (266)
T ss_dssp HHHHHHHHHHTTCCSCCCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCCcccCCCchhhcccCCCCCCCcCCHHHHHHHHHHHHcC
Confidence 45688999999999865543321 13567789999999999999875
No 11
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=25.07 E-value=25 Score=22.83 Aligned_cols=18 Identities=6% Similarity=0.309 Sum_probs=16.5
Q ss_pred hcCCHHHHhHHHHHHHHH
Q psy17564 11 NSMDLSIRRELPTMLSKM 28 (109)
Q Consensus 11 ~~Md~~lK~~L~~~le~~ 28 (109)
++|+|..|..|+++|...
T Consensus 2 ~~~~m~~~~ei~~qi~~a 19 (84)
T 1iio_A 2 SHMKMGVKEDIRGQIIGA 19 (84)
T ss_dssp CCCCCSHHHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHHHH
Confidence 479999999999999998
No 12
>1hzo_A Beta-lactamase; mixed alpha/beta, cephalosporinase, hydrolase; HET: MES; 1.75A {Proteus vulgaris} SCOP: e.3.1.1
Probab=24.92 E-value=96 Score=22.03 Aligned_cols=46 Identities=11% Similarity=0.057 Sum_probs=33.7
Q ss_pred HHHHHHHhhhCCCCCcccch----hhee--ecCCCccchhhHHHHHHHHhcc
Q psy17564 22 PTMLSKMAADHQLDELIMPS----FTLL--HGYRTKIQASDYVYAMLALLES 67 (109)
Q Consensus 22 ~~~le~~a~~ygL~dl~~~S----F~r~--~Gy~~~lSA~D~vyav~ALLE~ 67 (109)
.+.+.+++.++|+.+-.+.. +... .+.....+|.|++..+.+|+..
T Consensus 121 ~~~~~~~~~~lG~~~t~~~~~~~~~~~~~~~~~~~~~T~~dla~~~~~l~~~ 172 (271)
T 1hzo_A 121 PAKVTQFARSINDVTYRLDRKEPELNTAIHGDPRDTTSPIAMAKSLQALTLG 172 (271)
T ss_dssp HHHHHHHHHHTTCSSCCCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCCceeeCCCChhhccCCCCCCCCccCHHHHHHHHHHHHcC
Confidence 35788899999999865532 2111 2346788999999999999875
No 13
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=24.90 E-value=51 Score=21.78 Aligned_cols=46 Identities=17% Similarity=0.088 Sum_probs=37.6
Q ss_pred hhchhcCCHHHHhHHHHHHHHHhhhCCCCCccc-----------chhheeecCCCcc
Q psy17564 7 KQLYNSMDLSIRRELPTMLSKMAADHQLDELIM-----------PSFTLLHGYRTKI 52 (109)
Q Consensus 7 kQ~y~~Md~~lK~~L~~~le~~a~~ygL~dl~~-----------~SF~r~~Gy~~~l 52 (109)
+++|..|+.+.|+.+.+...+...+.|..+++. ++|-++|+=|..|
T Consensus 3 ~~~~~~~~~~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~~K~~L 59 (189)
T 3vp5_A 3 KSTYFSLSDEKRNRVYDACLNEFQTHSFHEAKIMHIVKALDIPRGSFYQYFEDLKDA 59 (189)
T ss_dssp CHHHHTSCHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred chhhhhCCHHHHHHHHHHHHHHHHHCCcccccHHHHHHHhCCChHHHHHHCCCHHHH
Confidence 456788999999999999999999999997776 6777777766443
No 14
>4ay1_A Chitinase-3-like protein 2; chilectin, lectin, chitooligosaccharide, pseudochitinase, HY; HET: NAG; 1.95A {Homo sapiens}
Probab=24.82 E-value=54 Score=24.98 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=26.8
Q ss_pred hchhcC--CHHHHhHHHHHHHHHhhhCCCCCccc
Q psy17564 8 QLYNSM--DLSIRRELPTMLSKMAADHQLDELIM 39 (109)
Q Consensus 8 Q~y~~M--d~~lK~~L~~~le~~a~~ygL~dl~~ 39 (109)
+.|+.| +.+.|+.|-+.+.+++.+||++.|-.
T Consensus 84 ~~Fs~~~~~~~~R~~Fi~siv~~~~~~~fDGiDi 117 (365)
T 4ay1_A 84 KGFHPMVDSSTSRLEFINSIILFLRNHNFDGLDV 117 (365)
T ss_dssp GGGTTGGGSHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred chHHHHHcCHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 456666 78899999999999999999997643
No 15
>1bsg_A Beta lactamase, penicillinase; hydrolase, antibiotic resistance; 1.85A {Streptomyces albus} SCOP: e.3.1.1
Probab=24.50 E-value=95 Score=21.70 Aligned_cols=45 Identities=2% Similarity=-0.062 Sum_probs=32.8
Q ss_pred HHHHHHhhhCCCCCcccchh----heee--cCCCccchhhHHHHHHHHhcc
Q psy17564 23 TMLSKMAADHQLDELIMPSF----TLLH--GYRTKIQASDYVYAMLALLES 67 (109)
Q Consensus 23 ~~le~~a~~ygL~dl~~~SF----~r~~--Gy~~~lSA~D~vyav~ALLE~ 67 (109)
+.+.+++.++|+.+-.+..- ...+ +.....||.|++..+.+|+..
T Consensus 123 ~~~~~~~~~lG~~~t~~~~~~~~~~~~~~~~~~~~~Ta~dla~~~~~l~~~ 173 (266)
T 1bsg_A 123 AAVTRFVRSLGDRVTRLDRWEPELNSAEPGRVTDTTSPRAITRTYGRLVLG 173 (266)
T ss_dssp HHHHHHHHHTTCSSCCCCSCTTGGGCCCTTCCTTEECHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCceEecCCchhhccccCCCCCCccCHHHHHHHHHHHHcC
Confidence 57888899999998655322 1111 345778999999999999874
No 16
>3tek_A Thermodbp-single stranded DNA binding protein; leucine zipper; 2.00A {Thermoproteus tenax}
Probab=24.07 E-value=45 Score=23.46 Aligned_cols=22 Identities=9% Similarity=0.176 Sum_probs=16.3
Q ss_pred CHHHHhHHHHHH--------HHHhhhCCCC
Q psy17564 14 DLSIRRELPTML--------SKMAADHQLD 35 (109)
Q Consensus 14 d~~lK~~L~~~l--------e~~a~~ygL~ 35 (109)
+.+.|+.+++++ .+.+|+|||+
T Consensus 82 s~~Fr~ssre~Fd~~K~WFFnE~~pky~l~ 111 (148)
T 3tek_A 82 SEKFRETSRELFDGLKKWFFEEAVPRYNLE 111 (148)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhCCC
Confidence 456677776665 4679999998
No 17
>1ylx_A Hypothetical protein APC35702; dimer, structural genomics, PSI, protein structure initiative; 1.60A {Geobacillus stearothermophilus} SCOP: d.82.5.1
Probab=23.64 E-value=38 Score=22.76 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=18.3
Q ss_pred HHhHHHHHHHHHhhhCCCCCccc
Q psy17564 17 IRRELPTMLSKMAADHQLDELIM 39 (109)
Q Consensus 17 lK~~L~~~le~~a~~ygL~dl~~ 39 (109)
+-..|..-|+.+..+|||++|-.
T Consensus 12 ii~el~~~~~~~l~~Ygld~vgi 34 (103)
T 1ylx_A 12 VIEEFIDTLEPMMEAYGLDQVGI 34 (103)
T ss_dssp HHHHHHHHHHHHHHHHTCSCEEE
T ss_pred HHHHHHHHHHHHHHHhCCcceee
Confidence 34567888899999999998743
No 18
>3poh_A Endo-beta-N-acetylglucosaminidase F1; TIM barrel, structural genomics, joint center for structural genomics, JCSG; 1.55A {Bacteroides thetaiotaomicron}
Probab=23.56 E-value=53 Score=27.02 Aligned_cols=31 Identities=6% Similarity=0.065 Sum_probs=27.2
Q ss_pred chhcCCHHHHhHHHHHHHHHhhhCCCCCccc
Q psy17564 9 LYNSMDLSIRRELPTMLSKMAADHQLDELIM 39 (109)
Q Consensus 9 ~y~~Md~~lK~~L~~~le~~a~~ygL~dl~~ 39 (109)
.|..|+.+.|+.+-..+..+..+||||.|-+
T Consensus 256 gf~~ls~~~r~~Fa~~v~~~v~~yglDGIDi 286 (451)
T 3poh_A 256 GLAQLSEQGAKDFAREVAQYCKAYNLDGVNY 286 (451)
T ss_dssp CTTCBCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcccCCHHHHHHHHHHHHHHHHHhCCCcEEE
Confidence 4677899999999999999999999996654
No 19
>2qpn_A Beta-lactamase GES-1; APO-enzyme, plasmid, hydrolase; 1.10A {Klebsiella pneumoniae} PDB: 3nia_A* 3ni9_A*
Probab=23.11 E-value=1.1e+02 Score=22.04 Aligned_cols=46 Identities=7% Similarity=-0.047 Sum_probs=33.6
Q ss_pred HHHHHHHhhhCCCCCcccchhh----e--eecCCCccchhhHHHHHHHHhcc
Q psy17564 22 PTMLSKMAADHQLDELIMPSFT----L--LHGYRTKIQASDYVYAMLALLES 67 (109)
Q Consensus 22 ~~~le~~a~~ygL~dl~~~SF~----r--~~Gy~~~lSA~D~vyav~ALLE~ 67 (109)
.+.+.+++.++|+.+-.+.... . ..+.....++.|++..+.+|+..
T Consensus 140 ~~~~~~~~~~lG~~~t~~~~~~~~~~~~~~~~~~~~~T~~dla~~~~~l~~~ 191 (287)
T 2qpn_A 140 PAAMTQYFRKIGDSVSRLDRKEPEMGDNTPGDLRDTTTPIAMARTVAKVLYG 191 (287)
T ss_dssp HHHHHHHHHHTTCSSCCCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCCceeecCCchhhcccCCCCCCCccCHHHHHHHHHHHHcC
Confidence 4678899999999985543221 1 11246788999999999999875
No 20
>2kdr_X NS4B, P27, non-structural protein 4B; HCV, 227-254 segment, membranous WEB, replication complex, membrane, transmembrane, RNA-binding; NMR {Hepatitis c virus}
Probab=23.00 E-value=26 Score=18.37 Aligned_cols=14 Identities=36% Similarity=0.278 Sum_probs=11.6
Q ss_pred hhHHHHHHHHhccC
Q psy17564 55 SDYVYAMLALLESP 68 (109)
Q Consensus 55 ~D~vyav~ALLE~~ 68 (109)
.|++.-|+|+|++-
T Consensus 1 ~Das~~VtaiLssL 14 (28)
T 2kdr_X 1 SDAAARVTAILSSL 14 (28)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH
Confidence 48888999999874
No 21
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=22.74 E-value=40 Score=21.32 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=16.5
Q ss_pred hHHHHHHHHHhhhCCCCCcc
Q psy17564 19 RELPTMLSKMAADHQLDELI 38 (109)
Q Consensus 19 ~~L~~~le~~a~~ygL~dl~ 38 (109)
--|+.++.+++.++||.++-
T Consensus 6 ~~Lqkri~~I~~k~gl~~~~ 25 (75)
T 1h3o_A 6 APLQRRILEIGKKHGITELH 25 (75)
T ss_dssp HHHHHHHHHHHHTTTCCEEC
T ss_pred HHHHHHHHHHHHhcCCCcCC
Confidence 34788899999999999864
No 22
>1n9b_A Penicillinase, beta-lactamase SHV-2; beta-lactam hydrolase, detergent binding, drug design, radiation damage; HET: MA4 EPE; 0.90A {Klebsiella pneumoniae} SCOP: e.3.1.1 PDB: 3d4f_A* 2zd8_A* 1q2p_A* 1shv_A* 1vm1_A* 2g2u_A 2h5s_A* 1ong_A* 3c4o_A 3c4p_A 3mke_A* 3mkf_A* 3mxr_A* 3mxs_A* 3n4i_A 2a3u_A* 3opr_A* 3opl_A* 3oph_A* 3opp_A* ...
Probab=22.64 E-value=1.2e+02 Score=21.45 Aligned_cols=46 Identities=13% Similarity=0.093 Sum_probs=33.3
Q ss_pred HHHHHHHhhhCCCCCcccchhh----ee--ecCCCccchhhHHHHHHHHhcc
Q psy17564 22 PTMLSKMAADHQLDELIMPSFT----LL--HGYRTKIQASDYVYAMLALLES 67 (109)
Q Consensus 22 ~~~le~~a~~ygL~dl~~~SF~----r~--~Gy~~~lSA~D~vyav~ALLE~ 67 (109)
.+.+.+++.++|+.+-.+.... .. .+.....++.|++..+.+|+..
T Consensus 120 ~~~~~~~~~~lG~~~t~~~~~~~~~~~~~~~~~~~~~T~~d~a~~~~~l~~~ 171 (265)
T 1n9b_A 120 PAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPASMAATLRKLLTS 171 (265)
T ss_dssp HHHHHHHHHHTTCCSCBCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCcceecCcCchhhccCCCCCCCCcCCHHHHHHHHHHHhcC
Confidence 3568889999999985543221 11 1246788999999999999875
No 23
>2j9o_A TLL2115 protein; penicillin-binding protein, hydrolase, lactamase, thioestera DD-peptidase; 1.50A {Synechococcus elongatus} PDB: 2jbf_A* 2j7v_A 2j8y_A*
Probab=21.94 E-value=1.2e+02 Score=22.19 Aligned_cols=45 Identities=11% Similarity=0.061 Sum_probs=32.0
Q ss_pred HHHHHHhhhCCCCCcccchhheeecCCCccchhhHHHHHHHHhcc
Q psy17564 23 TMLSKMAADHQLDELIMPSFTLLHGYRTKIQASDYVYAMLALLES 67 (109)
Q Consensus 23 ~~le~~a~~ygL~dl~~~SF~r~~Gy~~~lSA~D~vyav~ALLE~ 67 (109)
+.+.+++.++|+.+-.+..-....+.....++.|++..+.+++..
T Consensus 138 ~~~~~~~~~lG~~~t~~~~~~~~~~~~~~~T~~dla~~~~~l~~~ 182 (298)
T 2j9o_A 138 AELNQQFQEWGLENTVINNPEPDMKGTNTTSPRDLATLMLKIGQG 182 (298)
T ss_dssp HHHHHHHHHTTCSSCBCCSCTTCTTCCSEECHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCcccccCcCccccCCCccCHHHHHHHHHHHHcC
Confidence 577888999999875443221112235788999999999999874
No 24
>1g6a_A Beta-lactamase PSE-4; class A beta-lactamase, carbenicillinase, R234K mutant, hydrolase; 1.75A {Pseudomonas aeruginosa} SCOP: e.3.1.1 PDB: 1g68_A
Probab=21.77 E-value=1.2e+02 Score=21.31 Aligned_cols=46 Identities=9% Similarity=0.010 Sum_probs=33.7
Q ss_pred HHHHHHHhhhCCCCCcccchh----hee--ecCCCccchhhHHHHHHHHhcc
Q psy17564 22 PTMLSKMAADHQLDELIMPSF----TLL--HGYRTKIQASDYVYAMLALLES 67 (109)
Q Consensus 22 ~~~le~~a~~ygL~dl~~~SF----~r~--~Gy~~~lSA~D~vyav~ALLE~ 67 (109)
.+.+.+++.++|+.+-.+... ... .++....+|.|++..+.+|...
T Consensus 123 ~~~~~~~~~~lG~~~t~~~~~~~~~~~~~~~~~~~~~T~~d~a~~~~~l~~~ 174 (271)
T 1g6a_A 123 PKGVTDFLRQIGDKETRLDRIEPDLNEGKLGDLRDTTTPKAIASTLNKFLFG 174 (271)
T ss_dssp HHHHHHHHHHTTCSSCBCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCCceecCCchhhccccCCCCCCccCHHHHHHHHHHHHcC
Confidence 357888899999998655432 111 1346789999999999999875
No 25
>1w7f_A Beta-lactamase; hydrolase, isocitrate, bacillus licheniformis hydrolase; HET: ICT; 1.80A {Bacillus licheniformis}
Probab=21.52 E-value=1.1e+02 Score=22.37 Aligned_cols=46 Identities=13% Similarity=-0.019 Sum_probs=33.8
Q ss_pred HHHHHHHhhhCCCCCcccchhhee------ecCCCccchhhHHHHHHHHhcc
Q psy17564 22 PTMLSKMAADHQLDELIMPSFTLL------HGYRTKIQASDYVYAMLALLES 67 (109)
Q Consensus 22 ~~~le~~a~~ygL~dl~~~SF~r~------~Gy~~~lSA~D~vyav~ALLE~ 67 (109)
.+.+.+++.++|+.+-.+...... .+.....||.|++..+.+|+..
T Consensus 159 ~~~~~~~~~~lG~~~t~~~~~~~~l~~~~~~~~~~~tT~~d~a~l~~~l~~~ 210 (307)
T 1w7f_A 159 PESLKKELRKIGDEVTNPERFEPELNEVNPGETQDTSTARALATSLQAFALE 210 (307)
T ss_dssp HHHHHHHHHHTTCCSCCCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCCceeecCcchhhccccCCCCCCeECHHHHHHHHHHHhcC
Confidence 367888999999998655433211 1245788999999999999874
No 26
>1lre_A Receptor-associated protein; low density lipoprotein receptor family associated protein, LDLR family associated protein, helix bundle; NMR {Homo sapiens} SCOP: a.13.1.1 PDB: 1nre_A 2fyl_A 1op1_A
Probab=21.40 E-value=45 Score=21.49 Aligned_cols=17 Identities=29% Similarity=0.227 Sum_probs=13.1
Q ss_pred HHHHHHHHHhhhCCCCC
Q psy17564 20 ELPTMLSKMAADHQLDE 36 (109)
Q Consensus 20 ~L~~~le~~a~~ygL~d 36 (109)
.|+.+|..+..+|||++
T Consensus 60 ~LR~kl~~Il~~ygLd~ 76 (81)
T 1lre_A 60 RLIRNLNVILAKYGLDG 76 (81)
T ss_dssp HHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHhCCCc
Confidence 47777777888889976
No 27
>3c5a_A Class A carbapenemase KPC-2; beta-lactamase, C-terminal deleted mutant, plasmid, hydrolase; HET: CIT; 1.23A {Escherichia coli} PDB: 3rxw_A* 3rxx_A* 2ods_A 2ov5_A* 3e2k_A 3e2l_A*
Probab=21.22 E-value=1.3e+02 Score=21.01 Aligned_cols=46 Identities=9% Similarity=0.010 Sum_probs=33.0
Q ss_pred HHHHHHHhhhCCCCCcccch----hheee--cCCCccchhhHHHHHHHHhcc
Q psy17564 22 PTMLSKMAADHQLDELIMPS----FTLLH--GYRTKIQASDYVYAMLALLES 67 (109)
Q Consensus 22 ~~~le~~a~~ygL~dl~~~S----F~r~~--Gy~~~lSA~D~vyav~ALLE~ 67 (109)
.+.+.+++.++|+.+-.+.. +.... +.....++.|++..+.+|...
T Consensus 119 ~~~~~~~~~~lG~~~t~~~~~~~~~~~~~~~~~~~~~T~~dla~~~~~l~~~ 170 (264)
T 3c5a_A 119 PAGLTAFMRSIGDTTFRLDRWELELNSAIPGDARDTSSPRAVTESLQKLTLG 170 (264)
T ss_dssp HHHHHHHHHHTTCSSCBCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCCccccCCCchhhccccCCCCCCcCCHHHHHHHHHHHHcC
Confidence 35788889999999854432 21111 245788999999999999874
No 28
>2i46_A Adrenocortical dysplasia protein homolog; TPP1, OB fold, POT1 binding, protein binding; 2.70A {Homo sapiens}
Probab=20.81 E-value=33 Score=24.55 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=15.8
Q ss_pred cCCHHHHhHHHHHHHHHhhh
Q psy17564 12 SMDLSIRRELPTMLSKMAAD 31 (109)
Q Consensus 12 ~Md~~lK~~L~~~le~~a~~ 31 (109)
.||+..||+|++.+++|..+
T Consensus 136 N~dp~VrkKl~~cle~hlsE 155 (161)
T 2i46_A 136 NQDLDVQKKLYDCLEEHLSE 155 (161)
T ss_dssp GGSHHHHHHHHHHHTTC---
T ss_pred CCCHHHHHHHHHHHHHHhhc
Confidence 58999999999999988754
Done!