RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17564
         (109 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.6 bits (71), Expect = 0.038
 Identities = 18/133 (13%), Positives = 41/133 (30%), Gaps = 42/133 (31%)

Query: 2   PLLQSKQL----YNSMDLSIR---RELPTMLSKMAADH----------Q------LDELI 38
            L+++K+L      +  ++ R   ++  + L +   +           Q       +EL 
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR 174

Query: 39  MPSFTLLHGYRTKIQASDYVYAMLALLESPVRILCRMDDVELENIPEYNQIF------EH 92
                L   Y   +   D +      L   +R       ++ E +  + Q        E+
Sbjct: 175 ----DLYQTYHVLVG--DLIKFSAETLSELIR-----TTLDAEKV--FTQGLNILEWLEN 221

Query: 93  QEKKPSDCFLDAA 105
               P   +L + 
Sbjct: 222 PSNTPDKDYLLSI 234



 Score = 28.5 bits (63), Expect = 0.51
 Identities = 14/96 (14%), Positives = 27/96 (28%), Gaps = 41/96 (42%)

Query: 41  SFTLLHG---YRTKIQASDYVYAM------LALLESPVRILCRMDD----VEL------- 80
             TL HG   +   +  + +  A         +L  P       D+     EL       
Sbjct: 8   PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67

Query: 81  -------ENIPEYNQI-------FEHQEKKPSDCFL 102
                    + +++Q+       FE+        +L
Sbjct: 68  VSSLVEPSKVGQFDQVLNLCLTEFENC-------YL 96



 Score = 27.3 bits (60), Expect = 1.0
 Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 20/49 (40%)

Query: 59   YAMLALLESPVRILCRMDDVELENIPE--------------YN----QI 89
            Y M+A+  +P R+        L+ + E              YN    Q 
Sbjct: 1807 YGMIAI--NPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQY 1853


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0480    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,610,979
Number of extensions: 82442
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 5
Length of query: 109
Length of database: 6,701,793
Length adjustment: 73
Effective length of query: 36
Effective length of database: 4,663,560
Effective search space: 167888160
Effective search space used: 167888160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.0 bits)