Query psy17567
Match_columns 362
No_of_seqs 208 out of 398
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 16:51:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17567.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17567hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b6a_A Methionine aminopeptida 77.0 0.62 2.1E-05 47.3 0.7 22 88-109 116-137 (478)
2 4ady_A RPN2, 26S proteasome re 48.2 3.5 0.00012 45.2 -0.3 9 89-97 898-906 (963)
3 3obv_E Protein diaphanous homo 37.6 48 0.0016 33.1 6.2 14 66-79 425-438 (457)
4 2j1d_G DAAM1, disheveled-assoc 36.4 35 0.0012 34.2 5.0 15 66-80 433-447 (483)
5 1914_A Signal recognition part 32.6 6.9 0.00024 35.9 -0.9 16 69-84 154-169 (232)
6 3dtp_E RLC, myosin regulatory 25.7 16 0.00055 30.9 0.3 7 68-74 53-59 (196)
7 3dtp_E RLC, myosin regulatory 24.5 9.7 0.00033 32.3 -1.4 13 66-78 54-66 (196)
8 2riq_A Poly [ADP-ribose] polym 23.6 1.7E+02 0.0057 25.1 6.3 37 61-98 56-92 (160)
9 3ixz_A Potassium-transporting 21.0 99 0.0034 33.8 5.5 19 112-130 88-106 (1034)
10 1914_A Signal recognition part 19.6 10 0.00035 34.7 -2.3 28 41-68 114-141 (232)
No 1
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A*
Probab=77.03 E-value=0.62 Score=47.28 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=15.1
Q ss_pred cccccccccccccccccccccC
Q psy17567 88 QCDTMIPVFKKGVLYKGIYCPS 109 (362)
Q Consensus 88 ~~~~~~~~f~~g~~~~g~~~p~ 109 (362)
-|--+...|..|....|-.+.|
T Consensus 116 ~~~~~~~~~~~~~~p~g~~~~~ 137 (478)
T 1b6a_A 116 PSVPICDLYPNGVFPKGQECEY 137 (478)
T ss_dssp CCSCHHHHSTTSCCCCCEEECC
T ss_pred CCCcHHHhCCCCCCCCceEEec
Confidence 3444555788888888866665
No 2
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=48.22 E-value=3.5 Score=45.23 Aligned_cols=9 Identities=44% Similarity=0.630 Sum_probs=5.2
Q ss_pred ccccccccc
Q psy17567 89 CDTMIPVFK 97 (362)
Q Consensus 89 ~~~~~~~f~ 97 (362)
.++..|+-+
T Consensus 898 ~~r~~p~~~ 906 (963)
T 4ady_A 898 DDRFVPVRK 906 (963)
T ss_dssp SSSEEESSC
T ss_pred CCCcccccc
Confidence 346667654
No 3
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=37.59 E-value=48 Score=33.05 Aligned_cols=14 Identities=7% Similarity=0.143 Sum_probs=8.1
Q ss_pred cCHHhHHHHHHHhh
Q psy17567 66 QSVKEIEESLKERK 79 (362)
Q Consensus 66 ~~~~~~~~~l~e~~ 79 (362)
++...+|..|...+
T Consensus 425 ~~~gv~D~Ll~~l~ 438 (457)
T 3obv_E 425 DETGVMDSLLEALQ 438 (457)
T ss_dssp CCCCHHHHHHHHHH
T ss_pred cccccHHHHHHHHh
Confidence 35556666665553
No 4
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=36.40 E-value=35 Score=34.18 Aligned_cols=15 Identities=7% Similarity=0.231 Sum_probs=0.0
Q ss_pred cCHHhHHHHHHHhhh
Q psy17567 66 QSVKEIEESLKERKE 80 (362)
Q Consensus 66 ~~~~~~~~~l~e~~~ 80 (362)
+++..+|..|.-.+.
T Consensus 433 ~~~g~~D~Ll~~Lr~ 447 (483)
T 2j1d_G 433 EESGEFDDLVSALRS 447 (483)
T ss_dssp ---------------
T ss_pred cccccHHHHHHHHhC
Confidence 355566655554443
No 5
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA binding, signal recognition particle (SRP), translation regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1 PDB: 1e8o_A* 1e8s_A 1ry1_C*
Probab=32.62 E-value=6.9 Score=35.89 Aligned_cols=16 Identities=6% Similarity=-0.033 Sum_probs=8.7
Q ss_pred HhHHHHHHHhhhhccC
Q psy17567 69 KEIEESLKERKEKTLT 84 (362)
Q Consensus 69 ~~~~~~l~e~~~~~lt 84 (362)
|||.......-+.+-+
T Consensus 154 ~eF~~~s~~Ly~a~P~ 169 (232)
T 1914_A 154 EEFSRAAEKLYLADPM 169 (232)
T ss_dssp HHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCC
Confidence 5666655555554443
No 6
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=25.69 E-value=16 Score=30.93 Aligned_cols=7 Identities=14% Similarity=0.306 Sum_probs=2.7
Q ss_pred HHhHHHH
Q psy17567 68 VKEIEES 74 (362)
Q Consensus 68 ~~~~~~~ 74 (362)
+++++..
T Consensus 53 ~~~~~~l 59 (196)
T 3dtp_E 53 QHQVQEF 59 (196)
T ss_dssp TTTHHHH
T ss_pred HHHHHHH
Confidence 3344433
No 7
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=24.54 E-value=9.7 Score=32.35 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=8.2
Q ss_pred cCHHhHHHHHHHh
Q psy17567 66 QSVKEIEESLKER 78 (362)
Q Consensus 66 ~~~~~~~~~l~e~ 78 (362)
+..+++..+-..+
T Consensus 54 ~~~~~l~~~F~~~ 66 (196)
T 3dtp_E 54 HQVQEFKEAFQLI 66 (196)
T ss_dssp TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5666777766554
No 8
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=23.61 E-value=1.7e+02 Score=25.10 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=26.9
Q ss_pred hcccccCHHhHHHHHHHhhhhccCcccccccccccccc
Q psy17567 61 KKKEEQSVKEIEESLKERKEKTLTEDSQCDTMIPVFKK 98 (362)
Q Consensus 61 ~~~~~~~~~~~~~~l~e~~~~~lt~~~~~~~~~~~f~~ 98 (362)
+..++++++=+++..|-..-..+..++.|++ .-+|.+
T Consensus 56 q~~~g~~~~ll~r~ADgm~FGal~~CP~C~G-~l~y~~ 92 (160)
T 2riq_A 56 QQVPSGESAILDRVADGMVFGALLPCEECSG-QLVFKS 92 (160)
T ss_dssp CCCCSSHHHHHHHHHHHHHHCEECCCTTTCC-CEEEET
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCCCCCC-EEEEeC
Confidence 3345667777888888888899999999993 335643
No 9
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=21.00 E-value=99 Score=33.85 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=10.0
Q ss_pred CcCCCcchHHhHHHHHHHH
Q psy17567 112 NSFREPSLEMSYQRYSHRQ 130 (362)
Q Consensus 112 ~kF~s~~LE~LYq~Y~~r~ 130 (362)
|...++.-...++++..+.
T Consensus 88 N~l~~~~~~~~~~~~~~q~ 106 (1034)
T 3ixz_A 88 NALRPPRGTPEYVKFARQL 106 (1034)
T ss_pred CCCCCCCCCCHHHHHHHHH
Confidence 5555555445565555443
No 10
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA binding, signal recognition particle (SRP), translation regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1 PDB: 1e8o_A* 1e8s_A 1ry1_C*
Probab=19.65 E-value=10 Score=34.70 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=0.0
Q ss_pred HhhhhhhHHHHHHHHHhhhhhcccccCH
Q psy17567 41 KNKKKKKKKKKKKKKKKKKKKKKEEQSV 68 (362)
Q Consensus 41 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 68 (362)
++.++|||+|+++++|+.+|+-.++++|
T Consensus 114 KKrdKKkkKk~~~~~k~~~~~~~~~~~~ 141 (232)
T 1914_A 114 KKRDKKNKSKKSKPAQGGEQKLISEEDD 141 (232)
T ss_dssp BCC-----------CCEEEEEC------
T ss_pred Cccccchhhhhhhhhhhhhhhhhhhhhc
Done!