Query psy17567
Match_columns 362
No_of_seqs 208 out of 398
Neff 6.2
Searched_HMMs 13730
Date Fri Aug 16 16:51:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17567.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17567hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sa0e_ a.137.10.1 (E:) Stathm 15.1 74 0.0054 24.2 4.2 21 9-29 48-68 (138)
2 d2dofa1 a.159.2.1 (A:888-959) 14.2 24 0.0018 24.2 0.8 54 69-131 14-67 (72)
3 d2trcp_ c.47.1.6 (P:) Phosduci 12.0 52 0.0038 26.9 2.5 11 66-76 105-115 (217)
4 d1wjpa2 g.37.1.1 (A:43-66) Zin 11.0 58 0.0042 17.8 1.6 18 106-123 2-19 (26)
5 d1us7b_ a.205.1.1 (B:) Hsp90 c 7.7 4.3E+02 0.032 21.1 6.8 40 316-355 85-126 (201)
6 d1jb0i_ f.23.17.1 (I:) Subunit 6.6 92 0.0067 18.6 1.3 8 217-224 6-13 (38)
7 d2cqea2 g.66.1.1 (A:429-457) Z 6.5 1E+02 0.0073 17.4 1.3 18 95-112 11-28 (29)
8 d2a6aa2 c.55.1.9 (A:104-193) H 6.2 88 0.0064 21.7 1.2 20 66-85 35-54 (90)
9 d1gh2a_ c.47.1.1 (A:) Thioredo 5.2 75 0.0054 22.6 0.3 33 66-98 7-45 (107)
10 d1k1xa1 a.8.3.2 (A:311-384) 4- 5.0 49 0.0036 23.1 -0.9 12 101-112 50-61 (74)
No 1
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=15.05 E-value=74 Score=24.16 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=11.5
Q ss_pred hhhhhhHHHhhhHHHHHhhHH
Q psy17567 9 GEKKKRIEKRNKEEEKEENEQ 29 (362)
Q Consensus 9 ~~~~~~~~~~~~~~~e~e~~e 29 (362)
.++.++||.||+..+++...+
T Consensus 48 q~K~~~aeeRr~~~e~e~~~k 68 (138)
T d1sa0e_ 48 QKKLEAAEERRKYQEAELLKH 68 (138)
T ss_dssp TTTGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666654444433
No 2
>d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.24 E-value=24 Score=24.19 Aligned_cols=54 Identities=7% Similarity=0.071 Sum_probs=42.1
Q ss_pred HhHHHHHHHhhhhccCccccccccccccccccccccccccCccCcCCCcchHHhHHHHHHHHh
Q psy17567 69 KEIEESLKERKEKTLTEDSQCDTMIPVFKKGVLYKGIYCPSLTNSFREPSLEMSYQRYSHRQR 131 (362)
Q Consensus 69 ~~~~~~l~e~~~~~lt~~~~~~~~~~~f~~g~~~~g~~~p~L~~kF~s~~LE~LYq~Y~~r~~ 131 (362)
++|...|.|. ..++.++|+.+.+.+.+-..|+++ ++.....-|.+|..|...+.
T Consensus 14 ~~Fk~LL~e~---~~~~~~~W~~~~~~l~~DpRy~a~------~~l~~~eRe~lF~eyi~~l~ 67 (72)
T d2dofa1 14 QNFKALLSDM---VRSSDVSWSDTRRTLRKDHRWESG------SLLEREEKEKLFNEHIEALT 67 (72)
T ss_dssp HHHHHHHHHH---TCCSSCCHHHHHHHHHHSSTHHHH------TTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc---CCCCCCCHHHHHHHhcCCcchhhc------CcCCHHHHHHHHHHHHHHHH
Confidence 6799999986 477778899999999876777776 34555678999999977654
No 3
>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=12.04 E-value=52 Score=26.89 Aligned_cols=11 Identities=9% Similarity=0.308 Sum_probs=7.2
Q ss_pred cCHHhHHHHHH
Q psy17567 66 QSVKEIEESLK 76 (362)
Q Consensus 66 ~~~~~~~~~l~ 76 (362)
.+.+++...+.
T Consensus 105 ~~~~~f~~~v~ 115 (217)
T d2trcp_ 105 ETGEQFLETIE 115 (217)
T ss_dssp CSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 67777766654
No 4
>d1wjpa2 g.37.1.1 (A:43-66) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.05 E-value=58 Score=17.77 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=14.5
Q ss_pred cccCccCcCCCcchHHhH
Q psy17567 106 YCPSLTNSFREPSLEMSY 123 (362)
Q Consensus 106 ~~p~L~~kF~s~~LE~LY 123 (362)
-|||+.-+|-|++|...-
T Consensus 2 vcpycslrf~sp~lk~eh 19 (26)
T d1wjpa2 2 VCPYCSLRFFSPELKQEH 19 (26)
T ss_dssp CCTTTCCCBSSHHHHHHH
T ss_pred CCCcceeeeCCHHHhhHh
Confidence 389999999999886543
No 5
>d1us7b_ a.205.1.1 (B:) Hsp90 co-chaperone CDC37 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.68 E-value=4.3e+02 Score=21.12 Aligned_cols=40 Identities=10% Similarity=0.154 Sum_probs=31.8
Q ss_pred hhhhhhhhhhh--hHHhHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy17567 316 NSAGMYTKYLT--DRGQRRAFLETHRSTETRMKTQKENDQQE 355 (362)
Q Consensus 316 NliG~~~~~l~--e~~qR~aFLetrq~i~~rl~Le~E~~qQE 355 (362)
+.++.|+.=+. +...+.+|.+.-+....|++-+.+-..+|
T Consensus 85 ~~v~~FF~ki~~~~~~y~~~F~~dv~~~~~Rik~Ra~~~~~e 126 (201)
T d1us7b_ 85 ACFRQFFTKIKTADRQYMEGFNDELEAFKERVRGRAKLRIEK 126 (201)
T ss_dssp GTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55788888777 77889999999999999998776654444
No 6
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=6.64 E-value=92 Score=18.62 Aligned_cols=8 Identities=38% Similarity=1.053 Sum_probs=3.4
Q ss_pred hhhhhhhh
Q psy17567 217 ANNYLQWA 224 (362)
Q Consensus 217 ~~~yl~~~ 224 (362)
|.+|++|.
T Consensus 6 AAsyLPwI 13 (38)
T d1jb0i_ 6 AASFLPWI 13 (38)
T ss_dssp TTTTHHHH
T ss_pred HHHhcchh
Confidence 33444443
No 7
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.45 E-value=1e+02 Score=17.42 Aligned_cols=18 Identities=17% Similarity=0.471 Sum_probs=14.3
Q ss_pred ccccccccccccccCccC
Q psy17567 95 VFKKGVLYKGIYCPSLTN 112 (362)
Q Consensus 95 ~f~~g~~~~g~~~p~L~~ 112 (362)
+.-.|.-.||-.|||+.+
T Consensus 11 fYvqGyCtrgenC~ymH~ 28 (29)
T d2cqea2 11 FYITGFCARAENCPYMHG 28 (29)
T ss_dssp TTTTTCCSCSTTCSSBSS
T ss_pred hheeeeecCCcCcccccC
Confidence 345688889999999875
No 8
>d2a6aa2 c.55.1.9 (A:104-193) Hypothetical protein TM0874 {Thermotoga maritima [TaxId: 2336]}
Probab=6.24 E-value=88 Score=21.73 Aligned_cols=20 Identities=35% Similarity=0.285 Sum_probs=16.7
Q ss_pred cCHHhHHHHHHHhhhhccCc
Q psy17567 66 QSVKEIEESLKERKEKTLTE 85 (362)
Q Consensus 66 ~~~~~~~~~l~e~~~~~lt~ 85 (362)
-||||++++++|.+++..-.
T Consensus 35 ~sdee~~~i~ke~~p~~vl~ 54 (90)
T d2a6aa2 35 VSDEELEEITKEFSPKIVLK 54 (90)
T ss_dssp EEHHHHHHHHHHHCCSEEEE
T ss_pred cCHHHHHHHHHhcCCceEee
Confidence 58999999999999876543
No 9
>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.18 E-value=75 Score=22.55 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=23.0
Q ss_pred cCHHhHHHHHHHhhhhc----c--Ccccccccccccccc
Q psy17567 66 QSVKEIEESLKERKEKT----L--TEDSQCDTMIPVFKK 98 (362)
Q Consensus 66 ~~~~~~~~~l~e~~~~~----l--t~~~~~~~~~~~f~~ 98 (362)
++++|++..|++...+- + +-++.|..+.|+|+.
T Consensus 7 ~s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~ 45 (107)
T d1gh2a_ 7 GSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSS 45 (107)
T ss_dssp CSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhc
Confidence 58899999987644221 1 346888888888754
No 10
>d1k1xa1 a.8.3.2 (A:311-384) 4-alpha-glucanotransferase, domain 2 {Archaeon Thermococcus litoralis [TaxId: 2265]}
Probab=4.99 E-value=49 Score=23.06 Aligned_cols=12 Identities=42% Similarity=0.949 Sum_probs=0.0
Q ss_pred ccccccccCccC
Q psy17567 101 LYKGIYCPSLTN 112 (362)
Q Consensus 101 ~~~g~~~p~L~~ 112 (362)
++.|+|+|.|++
T Consensus 50 ~FGGlYLphLR~ 61 (74)
T d1k1xa1 50 VFGGIYLPHLRR 61 (74)
T ss_dssp SSCGGGCHHHHH
T ss_pred cccccchHHHHH
Done!