RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17567
(362 letters)
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 62.5 bits (151), Expect = 8e-12
Identities = 16/75 (21%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
+RK R E++KR+++ + + E E EK K+D+EE +++ ++ +K K
Sbjct: 87 IRKWRE---EQRKRLQELDAASKVMEQEWREKAKKDLEE-----WNQRQSEQVEKNKINN 138
Query: 61 KKKEEQSVKEIEESL 75
+ ++ ++ + +
Sbjct: 139 RIADKAFYQQPDADI 153
Score = 51.7 bits (123), Expect = 4e-08
Identities = 11/80 (13%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 14 RIEKRNKEEEKEENEQEEKEKE----DVEEEKNKKKKKKKKKK------KKKKKKKKKKK 63
+ ++ +E E +EE+ K D + +++ ++K KK +++ ++ +K K
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
Query: 64 EEQSVKEIEESLKERKEKTL 83
+ + + ++ +
Sbjct: 136 INNRIAD-KAFYQQPDADII 154
Score = 45.1 bits (106), Expect = 8e-06
Identities = 10/63 (15%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 26 ENEQEEKEKEDVEE--EKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTL 83
+ ++ +E E + + E+ +K+ ++ K +++ ++K ++ ++E + E+ EK
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
Query: 84 TED 86
+
Sbjct: 136 INN 138
Score = 44.8 bits (105), Expect = 9e-06
Identities = 12/68 (17%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 21 EEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKE 80
+ +E E K +E+ + ++ ++ K +++ ++K KK E+ + E +++ K
Sbjct: 78 DRLTQEPESIRKWREE-QRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 136
Query: 81 KTLTEDSQ 88
D
Sbjct: 137 NNRIADKA 144
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 50.3 bits (119), Expect = 2e-07
Identities = 13/66 (19%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
E++KR+++ + + E E EK K+D+EE +++ ++ +K K + ++ +
Sbjct: 108 EQRKRLQELDAASKVMEQEWREKAKKDLEE-----WNQRQSEQVEKNKINNRIADKAFYQ 162
Query: 70 EIEESL 75
+ + +
Sbjct: 163 QPDADI 168
Score = 49.1 bits (116), Expect = 4e-07
Identities = 8/73 (10%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 11 KKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
+K R E+R + +E + + +++ + +K+ ++ +++ ++ +K K + +
Sbjct: 103 RKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD----- 157
Query: 71 IEESLKERKEKTL 83
+ ++ +
Sbjct: 158 -KAFYQQPDADII 169
Score = 40.3 bits (93), Expect = 4e-04
Identities = 11/72 (15%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 21 EEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKE 80
E ++ E++ K ++++ +++ ++K KK ++ +++ EQ K + +
Sbjct: 100 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA--D 157
Query: 81 KTLTEDSQCDTM 92
K + D +
Sbjct: 158 KAFYQQPDADII 169
Score = 38.4 bits (88), Expect = 0.002
Identities = 10/69 (14%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 19 NKEEEKEENEQEEKEKEDVEE--EKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLK 76
+ + ++ +E E + + E+ +K+ ++ K +++ ++K ++ ++E +
Sbjct: 84 DGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQS 143
Query: 77 ERKEKTLTE 85
E+ EK
Sbjct: 144 EQVEKNKIN 152
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 50.7 bits (121), Expect = 4e-07
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 6 GGAGEKKKRIEKRNKEEEKE-ENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
G E K E ++ E E ++ D ++E KKKKKKKKK+ +
Sbjct: 51 AGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPK 110
Query: 65 EQS 67
Q+
Sbjct: 111 VQT 113
Score = 46.8 bits (111), Expect = 6e-06
Identities = 16/81 (19%), Positives = 32/81 (39%)
Query: 7 GAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQ 66
G E N + + ++ E+ + +K ++KKKK K +++ K+
Sbjct: 3 GVEEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGA 62
Query: 67 SVKEIEESLKERKEKTLTEDS 87
SV E+ L+ + D
Sbjct: 63 SVDEVARQLERSALEDKERDE 83
Score = 46.5 bits (110), Expect = 9e-06
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 6 GGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
++ + + +E + E+ E ++ +E+ KKKKKKKKK+
Sbjct: 50 AAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRG 108
Score = 46.1 bits (109), Expect = 1e-05
Identities = 13/64 (20%), Positives = 28/64 (43%)
Query: 2 RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
+ + A +++ ++ ++ + E ED E +++ + KKKKKK
Sbjct: 44 KSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKK 103
Query: 62 KKEE 65
KK+
Sbjct: 104 KKKR 107
Score = 46.1 bits (109), Expect = 1e-05
Identities = 17/68 (25%), Positives = 26/68 (38%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
K AGE++ E +E + ++ +E ++ KKKKKK
Sbjct: 44 KSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKK 103
Query: 61 KKKEEQSV 68
KKK V
Sbjct: 104 KKKRGPKV 111
Score = 44.5 bits (105), Expect = 3e-05
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 9 GEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEK-NKKKKKKKKKKKKKKKKKKKKKEEQS 67
E +++ ++ E+ E +E++++D + + KKKKKKKKK+ K + + S
Sbjct: 58 KESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTDPPS 117
Query: 68 V 68
V
Sbjct: 118 V 118
Score = 44.1 bits (104), Expect = 4e-05
Identities = 15/69 (21%), Positives = 29/69 (42%)
Query: 2 RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
+K +G + ++ +K + E Q E+ + +E + KKKKK
Sbjct: 43 KKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKK 102
Query: 62 KKEEQSVKE 70
KK+++ K
Sbjct: 103 KKKKRGPKV 111
Score = 44.1 bits (104), Expect = 4e-05
Identities = 16/84 (19%), Positives = 35/84 (41%)
Query: 8 AGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
AG ++ + + + +++EE EE KK++KKKK K +++ +E
Sbjct: 2 AGVEEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESG 61
Query: 68 VKEIEESLKERKEKTLTEDSQCDT 91
E + + + ++ D
Sbjct: 62 ASVDEVARQLERSALEDKERDEDD 85
Score = 40.7 bits (95), Expect = 6e-04
Identities = 12/72 (16%), Positives = 29/72 (40%)
Query: 2 RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
RK++ G ++ +KE +E + + E+K + + + KK
Sbjct: 40 RKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKK 99
Query: 62 KKEEQSVKEIEE 73
KK+++ + +
Sbjct: 100 KKKKKKKRGPKV 111
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 50.0 bits (120), Expect = 7e-07
Identities = 11/88 (12%), Positives = 26/88 (29%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
+ G + + +N E E + E + + + + ++K
Sbjct: 909 LGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERK 968
Query: 61 KKKEEQSVKEIEESLKERKEKTLTEDSQ 88
Q ++ S + K L E +
Sbjct: 969 DTFFAQQWTGVKSSAETYKNTLLAELER 996
Score = 37.3 bits (87), Expect = 0.009
Identities = 3/57 (5%), Positives = 16/57 (28%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQ 66
+ + E+++ ++ + K + ++ +K +
Sbjct: 953 LTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHHH 1009
Score = 35.4 bits (82), Expect = 0.030
Identities = 4/59 (6%), Positives = 16/59 (27%), Gaps = 2/59 (3%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKK--KKKKKKEEQ 66
+ + E + ++ ++ V+ K + ++ +K
Sbjct: 952 QLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHHHH 1010
Score = 29.2 bits (66), Expect = 2.3
Identities = 6/46 (13%), Positives = 17/46 (36%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKK 46
+ +R+ ++ K + E K E + + +E+ +
Sbjct: 964 LTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHHH 1009
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 48.6 bits (116), Expect = 2e-06
Identities = 10/72 (13%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKK-KKKKKKKKKKKKKKKKEEQSV 68
E K +R +E+ +E + ++ ++E + + +K + ++ + +++ K V
Sbjct: 927 ENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRV 986
Query: 69 KEIEESLKERKE 80
++E + + ++
Sbjct: 987 LSLQEEIAKLRK 998
Score = 48.2 bits (115), Expect = 3e-06
Identities = 15/84 (17%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKK-KKKKKKEEQSV 68
KK +IE R+ E K+ + E + ++ + +++ K+ K +K + E + +
Sbjct: 906 LKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL 965
Query: 69 KEIEESLKERKEKTLTEDSQCDTM 92
+ E L+ +E+ ++ ++
Sbjct: 966 RSDVERLRMSEEEAKNATNRVLSL 989
Score = 46.3 bits (110), Expect = 1e-05
Identities = 16/79 (20%), Positives = 34/79 (43%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
EK + +R + E+E + EE +K+ + + +KK ++ K + +
Sbjct: 963 EKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE 1022
Query: 70 EIEESLKERKEKTLTEDSQ 88
++ LKE+ TE +
Sbjct: 1023 QLVSELKEQNTLLKTEKEE 1041
Score = 43.6 bits (103), Expect = 9e-05
Identities = 14/70 (20%), Positives = 35/70 (50%)
Query: 12 KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
+ + EK+ EE ++ + E ++ +E+N K +K++ ++ + K+ E K++
Sbjct: 1002 QTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKL 1061
Query: 72 EESLKERKEK 81
E K+ +
Sbjct: 1062 VEETKQLELD 1071
Score = 42.4 bits (100), Expect = 2e-04
Identities = 14/77 (18%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 10 EKKKRIEKRNKEEEKEENE-QEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSV 68
E+ ++ K + + E+ +E +K E E+ + K++ K +K++ ++
Sbjct: 991 EEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050
Query: 69 KEIEESLKERKEKTLTE 85
KEI E+++++ + +
Sbjct: 1051 KEITETMEKKLVEETKQ 1067
Score = 42.0 bits (99), Expect = 3e-04
Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 9 GEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNK-KKKKKKKKKKKKKKKKKKKKEEQS 67
KR K+ K E + E+ +K +E + + ++K ++ K+ K +K E +
Sbjct: 899 RMMAKRELKKLKIEARSV-ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEIT 957
Query: 68 VKEIEESLKERKEKTLTEDSQ 88
E L+ E+ + +
Sbjct: 958 YSTETEKLRSDVERLRMSEEE 978
Score = 41.2 bits (97), Expect = 4e-04
Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK-KKEEQSV 68
E++ + +EE + KE + EK ++ K K + ++ + K++ +
Sbjct: 976 EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLL 1035
Query: 69 KEIEESLKERKEKTLTEDSQ 88
K +E L R E ++
Sbjct: 1036 KTEKEELNRRIHDQAKEITE 1055
Score = 40.9 bits (96), Expect = 5e-04
Identities = 15/75 (20%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 10 EKKKRIEKRN---KEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQ 66
+KK IE+ K E ++ + +++ ++ EK + ++ + K+ + +KK E+
Sbjct: 1005 TEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEE 1064
Query: 67 SVKEIEESLKERKEK 81
K++E L + + +
Sbjct: 1065 -TKQLELDLNDERLR 1078
Score = 30.8 bits (70), Expect = 0.71
Identities = 9/65 (13%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 10 EKKKRIEKRNKEEEKEE--NEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
+ K E+ E +++ + E++E ++ K+ + +KK ++ K+ +
Sbjct: 1016 KYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDE 1075
Query: 68 VKEIE 72
+
Sbjct: 1076 RLRYQ 1080
Score = 30.1 bits (68), Expect = 1.6
Identities = 11/84 (13%), Positives = 27/84 (32%), Gaps = 16/84 (19%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK--------- 60
E K I +++ K V + ++ K++ KK K
Sbjct: 864 EHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRE----LKKLKIEARSVERY 919
Query: 61 ---KKKEEQSVKEIEESLKERKEK 81
E + +++ + E+ ++
Sbjct: 920 KKLHIGLENKIMQLQRKIDEQNKE 943
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 47.9 bits (114), Expect = 3e-06
Identities = 11/81 (13%), Positives = 45/81 (55%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
+ ++ E +E R +EEE+ + + ++K+ ++ + +++ ++++ ++K + +
Sbjct: 918 LAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLE 977
Query: 61 KKKEEQSVKEIEESLKERKEK 81
K + +K++E+ + +++
Sbjct: 978 KVTADGKIKKMEDDILIMEDQ 998
Score = 46.0 bits (109), Expect = 1e-05
Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKK--------KK 52
+R +KK+++++ + +E+ E+EE ++ ++ EK K KK +
Sbjct: 939 EEERSQQLQAEKKKMQQQM-LDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMED 997
Query: 53 KKKKKKKKKKKEEQSVKEIEESLKERKEK 81
+ K K++K E+ V ++ +L E +EK
Sbjct: 998 QNNKLTKERKLLEERVSDLTTNLAEEEEK 1026
Score = 44.8 bits (106), Expect = 4e-05
Identities = 15/80 (18%), Positives = 41/80 (51%)
Query: 2 RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
+ A E + R+ + +E E+ +E E + +E+ E + + +KKK +++ +++
Sbjct: 905 TELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQL 964
Query: 62 KKEEQSVKEIEESLKERKEK 81
++EE + ++++ K
Sbjct: 965 EEEEAARQKLQLEKVTADGK 984
Score = 44.1 bits (104), Expect = 6e-05
Identities = 13/76 (17%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKE----KEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
E + E+ ++ + E ++ +++ +E +EEE+ ++K + +K K KK + +
Sbjct: 933 EARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDI 992
Query: 66 QSVKEIEESLKERKEK 81
+++ L + ++
Sbjct: 993 LIMEDQNNKLTKERKL 1008
Score = 42.9 bits (101), Expect = 1e-04
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 10 EKKKRIEKRNKEEE-----KEENEQEEKEKEDVEEEKNK-KKKKKKKKKKKKKKKKKKKK 63
EK K K E+ +++N + KE++ +EE + ++++K K K K K
Sbjct: 977 EKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNK 1036
Query: 64 EEQSVKEIEESLKERKEK 81
E + E+E LK+ ++
Sbjct: 1037 HESMISELEVRLKKEEKS 1054
Score = 40.2 bits (94), Expect = 0.001
Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 10 EKKKRIEKRNKEEE--KEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
+ + K KE + +E + EE+ K K K + + + + K+E+
Sbjct: 994 IMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEK 1053
Query: 68 VKEIEESLKERKEKTLTE 85
++ E +K + E ++
Sbjct: 1054 SRQELEKIKRKLEGESSD 1071
Score = 39.4 bits (92), Expect = 0.002
Identities = 18/84 (21%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
++R+ A + K +E+++ + +E+N +EK + + E ++ + + KK++ ++
Sbjct: 869 TKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEI 928
Query: 61 KKKEEQSVKEIEES---LKERKEK 81
+ E ++E EE L+ K+K
Sbjct: 929 LHEMEARIEEEEERSQQLQAEKKK 952
Score = 38.7 bits (90), Expect = 0.003
Identities = 16/91 (17%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEE---EKNKKKKKKKKKKKKKKKKKKKKKEE- 65
++K + E E +E + +K+++EE E + ++++++ ++ + +KKK +++
Sbjct: 898 QEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQM 957
Query: 66 ----QSVKEIEESLKERKEKTLTEDSQCDTM 92
+ ++E E + ++ + + +T D + M
Sbjct: 958 LDLEEQLEEEEAARQKLQLEKVTADGKIKKM 988
Score = 37.5 bits (87), Expect = 0.006
Identities = 16/76 (21%), Positives = 39/76 (51%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
E + + E+++++E ++ + E E D+ E+ + + + + K + KK+++ + +
Sbjct: 1045 EVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARL 1104
Query: 70 EIEESLKERKEKTLTE 85
E E S K K + E
Sbjct: 1105 EDETSQKNNALKKIRE 1120
Score = 37.1 bits (86), Expect = 0.008
Identities = 15/74 (20%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKK---KKKKKEEQ 66
E++++ + K + K E+ E E +EEK++++ +K K+K + + ++ + +
Sbjct: 1022 EEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQA 1081
Query: 67 SVKEIEESLKERKE 80
+ E++ L +++E
Sbjct: 1082 QIAELKAQLAKKEE 1095
Score = 36.7 bits (85), Expect = 0.012
Identities = 12/68 (17%), Positives = 31/68 (45%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
E+ + E ++ + E+ + K K+ ++ + + K K++K +++ ++
Sbjct: 962 EQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLA 1021
Query: 70 EIEESLKE 77
E EE K
Sbjct: 1022 EEEEKAKN 1029
Score = 35.6 bits (82), Expect = 0.026
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 11 KKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
K E++ EE + E+E E+ KN K K K + + + + KKEE+S +E
Sbjct: 1000 NKLTKERKLLEERVSDLTTNLAEEE--EKAKNLTKLKNKHESMISELEVRLKKEEKSRQE 1057
Query: 71 IEESLKERKEKTLTEDSQCDTM 92
+E+ ++ + ++ Q +
Sbjct: 1058 LEKIKRKLEGESSDLHEQIAEL 1079
Score = 35.6 bits (82), Expect = 0.026
Identities = 18/79 (22%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 10 EKKKRIEKRNKE------EEKEENEQEEKEKEDVEEEKNKKKKK-KKKKKKKKKKKKKKK 62
+++K +E+R + EE+E+ + K K E ++ + + KK++K +++ +K K+
Sbjct: 1004 KERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKR 1063
Query: 63 KEEQSVKEIEESLKERKEK 81
K E ++ E + E + +
Sbjct: 1064 KLEGESSDLHEQIAELQAQ 1082
Score = 35.6 bits (82), Expect = 0.028
Identities = 13/77 (16%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 10 EKKKRIE-KRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSV 68
E+K R E ++ K + + E+ ++ +++ + + K + KK+++ + + ++E S
Sbjct: 1051 EEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQ 1110
Query: 69 KEIEESLKERKEKTLTE 85
K E +++
Sbjct: 1111 KNNALKKIRELESHISD 1127
Score = 35.2 bits (81), Expect = 0.039
Identities = 15/80 (18%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKN----KKKKKKKKKKKKKKKKKKKKKEE 65
E + ++E++ ++ EK K +E E + + + + + + K + KK++E
Sbjct: 1038 ESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEEL 1097
Query: 66 QSVKEIEESLKERKEKTLTE 85
Q+ E +K L +
Sbjct: 1098 QAALARLEDETSQKNNALKK 1117
Score = 34.8 bits (80), Expect = 0.052
Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 11 KKKRIEKRNKEEEKEENEQEEKE-KEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
+ + +K N ++ E E + +ED+E EK + K +K+K+ ++ + K E +
Sbjct: 1105 EDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTL 1164
Query: 70 EIEESLKERKEKTLTEDSQ 88
+ + +E + +D
Sbjct: 1165 DTTATQQELRGSDYKDDDD 1183
Score = 33.7 bits (77), Expect = 0.096
Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 10 EKKKRIEKRNKEEEKEENEQE---EKEKEDVEEEKNKKKKKKKKKK----KKKKKKKKKK 62
EK K + K + E +E E +KE++ +E + K+K + + + + + +
Sbjct: 1025 EKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIA 1084
Query: 63 KEEQSVKEIEESLKERKEKTLTEDSQCDTM 92
+ + + + EE L+ + E SQ +
Sbjct: 1085 ELKAQLAKKEEELQAALARLEDETSQKNNA 1114
Score = 32.5 bits (74), Expect = 0.28
Identities = 11/78 (14%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 2 RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
++ A +K + +E + +E+ E E+ + E++K ++ + K + +
Sbjct: 1108 TSQKNNALKKIRELESHI-SDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDT 1166
Query: 62 KKEEQSVKEIEESLKERK 79
+Q ++ + + K
Sbjct: 1167 TATQQELRGSDYKDDDDK 1184
Score = 31.7 bits (72), Expect = 0.45
Identities = 18/97 (18%), Positives = 43/97 (44%), Gaps = 17/97 (17%)
Query: 2 RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKE------DVEEEKNKKKKKKKKKKKKK 55
RK G + + ++I + + + + + +KE+E +E+E ++K KK ++ +
Sbjct: 1063 RKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELE 1122
Query: 56 KK-----------KKKKKKEEQSVKEIEESLKERKEK 81
K + K E+ +++ E L+ K +
Sbjct: 1123 SHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTE 1159
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 43.9 bits (104), Expect = 2e-05
Identities = 12/83 (14%), Positives = 32/83 (38%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
M + E+ E ++ +EE + +E+ + ++ + +K ++
Sbjct: 1 MEQGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEE 60
Query: 61 KKKEEQSVKEIEESLKERKEKTL 83
+ + E+E L E + + L
Sbjct: 61 LAAAKAQIAELEAKLSEMEHRYL 83
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 45.3 bits (106), Expect = 2e-05
Identities = 12/73 (16%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
+ ++ E+ +E K+ E+ E ++ + +E+ + K +++++ K+ +K+
Sbjct: 515 QMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKN 574
Query: 70 EIEESLKERKEKT 82
EI++ L+ + +
Sbjct: 575 EIQD-LQTKMRRR 586
Score = 42.2 bits (98), Expect = 2e-04
Identities = 16/72 (22%), Positives = 37/72 (51%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
+ + + E + +NEQ ++KE +E K+ +K + + + K++++ ++
Sbjct: 496 AESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQ 555
Query: 70 EIEESLKERKEK 81
E E+ LKE +K
Sbjct: 556 EQEQLLKEGFQK 567
Score = 39.2 bits (90), Expect = 0.002
Identities = 8/71 (11%), Positives = 37/71 (52%)
Query: 11 KKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
+ +R++ + + + + +++ E + E+K + ++ K+ +K + + + ++ +
Sbjct: 490 EVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERT 549
Query: 71 IEESLKERKEK 81
+ L+E+++
Sbjct: 550 LALKLQEQEQL 560
Score = 39.2 bits (90), Expect = 0.002
Identities = 13/78 (16%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 8 AGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
++ EKE+ + E+ K + + K + ++K ++ ++K++ +E
Sbjct: 469 ESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEH- 527
Query: 68 VKEIEESLKERKEKTLTE 85
+K++ E ++ + + L E
Sbjct: 528 LKQLTEKMENDRVQLLKE 545
Score = 39.2 bits (90), Expect = 0.002
Identities = 14/79 (17%), Positives = 35/79 (44%)
Query: 2 RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
R + A K + + ++ E+ ++E +E +++ K + + + K++++
Sbjct: 493 RVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLAL 552
Query: 62 KKEEQSVKEIEESLKERKE 80
K +EQ E KE +
Sbjct: 553 KLQEQEQLLKEGFQKESRI 571
Score = 36.1 bits (82), Expect = 0.017
Identities = 10/61 (16%), Positives = 27/61 (44%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
K+ EK + + EQE ++E++ K+ +K+ + K + + + + +
Sbjct: 527 HLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRR 586
Query: 70 E 70
+
Sbjct: 587 K 587
Score = 33.0 bits (74), Expect = 0.14
Identities = 9/44 (20%), Positives = 24/44 (54%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKK 53
E+++ + + +E+E+ E +KE ++ E + K +++K
Sbjct: 545 EQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRKA 588
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 43.4 bits (103), Expect = 5e-05
Identities = 13/45 (28%), Positives = 28/45 (62%)
Query: 20 KEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
K E EE +EE+ ++ +E+ + + ++++++KK K KK +K
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 41.8 bits (99), Expect = 2e-04
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKK 55
K + +E+ +EEE + E+E+ + E EE+ ++KK K KK +K
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 41.0 bits (97), Expect = 3e-04
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 22 EEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEE 73
+ E E+ +E+E +EEK + ++++++KK K KK E++V + E
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWEL 267
Score = 41.0 bits (97), Expect = 3e-04
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 16 EKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
+ EE EE E ++EKED ++E ++++++KK K KK +K
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 40.3 bits (95), Expect = 4e-04
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 15 IEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
K EE E E+ KE+++ +++ ++++++KK K KK +K +
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWD 264
Score = 39.5 bits (93), Expect = 0.001
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 11 KKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKK 57
K EE+E ++E+++ +D + ++++KK K KK +K
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 36.0 bits (84), Expect = 0.012
Identities = 7/49 (14%), Positives = 29/49 (59%)
Query: 29 QEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKE 77
+ + E+ EE+ K++K+ + ++++++++ K++E+++ +
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWD 264
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 43.6 bits (103), Expect = 8e-05
Identities = 18/57 (31%), Positives = 39/57 (68%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQ 66
K+ E EEEK++ E++++EK+D +++K K ++ ++++KK K KK K++ ++
Sbjct: 210 TKEVEKEVPIPEEEKKDEEKKDEEKKDEDDKKPKLEEVDEEEEKKPKTKKVKEEVQE 266
Score = 38.6 bits (90), Expect = 0.003
Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 5/59 (8%)
Query: 20 KEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKK-----KKKKKKKKKKKEEQSVKEIEE 73
KE EKE EE++K++ ++++ KK + KK K ++++KK K KK ++ V+EIEE
Sbjct: 211 KEVEKEVPIPEEEKKDEEKKDEEKKDEDDKKPKLEEVDEEEEKKPKTKKVKEEVQEIEE 269
Score = 36.7 bits (85), Expect = 0.011
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 29 QEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTLTEDSQ 88
+ EKE EEE KK ++KK ++KK + KK K EE +E ++ ++ ++ + E +
Sbjct: 212 EVEKEVPIPEEE--KKDEEKKDEEKKDEDDKKPKLEEVDEEEEKKPKTKKVKEEVQEIEE 269
Query: 89 CDTMIPVFKK 98
+ P++ +
Sbjct: 270 LNKTKPLWTR 279
Score = 27.8 bits (62), Expect = 7.6
Identities = 10/43 (23%), Positives = 23/43 (53%)
Query: 32 KEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEES 74
K+ E E ++ K +++K+ K+ + K K+ V+++ S
Sbjct: 526 KDFELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEKVVVS 568
Score = 27.4 bits (61), Expect = 8.0
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 11 KKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKK 58
+ K + K+ E EE ++E+ E+E +E K K+ + +K
Sbjct: 517 EGKTLVDITKDFELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEK 564
Score = 27.4 bits (61), Expect = 9.4
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 27 NEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
E E K D+ K + ++ ++K +++K+ K+ E K ++E L ++ EK
Sbjct: 514 KEFEGKTLVDI----TKDFELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEK 564
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 42.2 bits (98), Expect = 2e-04
Identities = 18/81 (22%), Positives = 30/81 (37%)
Query: 2 RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
RR + K + R + + E++ ++ + KK KK KK KK K
Sbjct: 334 TMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGK 393
Query: 62 KKEEQSVKEIEESLKERKEKT 82
K ++ E+K T
Sbjct: 394 KAAATKKPAADKKPAEKKPTT 414
Score = 41.8 bits (97), Expect = 2e-04
Identities = 13/79 (16%), Positives = 32/79 (40%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
+ ++ + + + + +E+ +K + ++ KK KK KK K
Sbjct: 340 ILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATK 399
Query: 61 KKKEEQSVKEIEESLKERK 79
K ++ E + + +E+K
Sbjct: 400 KPAADKKPAEKKPTTEEKK 418
Score = 41.8 bits (97), Expect = 3e-04
Identities = 18/72 (25%), Positives = 29/72 (40%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
K R++K E + E+ K+ ++ K KK KK KK K+ + K
Sbjct: 346 NHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADK 405
Query: 70 EIEESLKERKEK 81
+ E +EK
Sbjct: 406 KPAEKKPTTEEK 417
Score = 41.4 bits (96), Expect = 3e-04
Identities = 17/75 (22%), Positives = 36/75 (48%)
Query: 12 KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
++ + + ++ + + E++ V +K ++KK KK KK KK K+ + K+
Sbjct: 342 RQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKP 401
Query: 72 EESLKERKEKTLTED 86
K ++K TE+
Sbjct: 402 AADKKPAEKKPTTEE 416
Score = 40.2 bits (93), Expect = 7e-04
Identities = 18/81 (22%), Positives = 27/81 (33%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
R K + + E K E + +K ++ K KK KK KK
Sbjct: 338 NTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAA 397
Query: 61 KKKEEQSVKEIEESLKERKEK 81
KK K E+ ++K
Sbjct: 398 TKKPAADKKPAEKKPTTEEKK 418
Score = 36.8 bits (84), Expect = 0.010
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 3 KRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
+R + K + +K E K +E K ++KK KK KK KK
Sbjct: 336 RRNTILRQAKNHKLRMDKAAAA----LEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVV 391
Query: 63 KEEQSVKEIEESLKERKEKTLTEDSQ 88
++ + + + K+ EK T + +
Sbjct: 392 GKKAAATKKPAADKKPAEKKPTTEEK 417
Score = 33.3 bits (75), Expect = 0.10
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 2 RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
E+K K+ + ++ ++ +K K+ V +K KK KK +KK
Sbjct: 355 AAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKK-AAATKKPAADKKPAEKKPT 413
Query: 62 KKEEQSV 68
+E++
Sbjct: 414 TEEKKPA 420
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.9 bits (92), Expect = 3e-04
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 33/59 (55%)
Query: 64 EEQSVKEIEESLKERKEKTLTEDSQCDTMIPVFKKGVLYKGIYCPSLTNSFREPSLEMS 122
E+Q++K+++ SLK +Y +S P+L +
Sbjct: 18 EKQALKKLQASLK----------------------------LYAD---DS--APALAIK 43
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 41.8 bits (98), Expect = 3e-04
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 24 KEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKER 78
K+ENE K+KE EEE+ + + + K+++++++K +K KE + L
Sbjct: 392 KQENENMRKKKE--EEERRARMEAQLKEQRERERKMRKAKENSEESGEFDDLVSA 444
Score = 32.9 bits (75), Expect = 0.14
Identities = 10/48 (20%), Positives = 28/48 (58%)
Query: 40 EKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTLTEDS 87
++N+ +KKK++++++ + + + KE++ + KE E++ D
Sbjct: 393 QENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDD 440
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 41.4 bits (96), Expect = 3e-04
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 10/69 (14%)
Query: 8 AGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKK---------- 57
K+++ ++ E +E+ + K+ +KN K +K K K
Sbjct: 263 PNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKSIDAFF 322
Query: 58 KKKKKKEEQ 66
K KK +
Sbjct: 323 GAKNKKTGK 331
Score = 40.6 bits (94), Expect = 5e-04
Identities = 12/61 (19%), Positives = 18/61 (29%)
Query: 2 RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
K +K+ + + E KE K+ K KK K +K K
Sbjct: 250 SKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAK 309
Query: 62 K 62
Sbjct: 310 V 310
Score = 40.6 bits (94), Expect = 5e-04
Identities = 11/52 (21%), Positives = 20/52 (38%)
Query: 11 KKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
K+ K ++ +E+ K + ++ K KK K +K K K
Sbjct: 262 LPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKS 313
Score = 40.2 bits (93), Expect = 7e-04
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
E + ++ K +E E +++ + K KK K +K K ++ +K
Sbjct: 257 EPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMK 316
Query: 70 EIEE--SLKERKEKTL 83
I+ K +K +
Sbjct: 317 SIDAFFGAKNKKTGKI 332
Score = 39.0 bits (90), Expect = 0.001
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 5/64 (7%)
Query: 3 KRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKK-----KKKKK 57
K+ + E + E K K+ ++ K ++ K K K K K
Sbjct: 268 KKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKSIDAFFGAKNK 327
Query: 58 KKKK 61
K K
Sbjct: 328 KTGK 331
Score = 37.1 bits (85), Expect = 0.006
Identities = 11/60 (18%), Positives = 23/60 (38%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
K ++ + +++ + E VE +++ K K K KK K ++ K
Sbjct: 250 SKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAK 309
Score = 36.0 bits (82), Expect = 0.014
Identities = 11/51 (21%), Positives = 16/51 (31%)
Query: 20 KEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
E K+ + +E K+ K K K KK K + K
Sbjct: 256 PEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKA 306
Score = 35.2 bits (80), Expect = 0.024
Identities = 9/58 (15%), Positives = 16/58 (27%)
Query: 12 KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
+ K+ +E + + K K K KK K +K +
Sbjct: 256 PEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKS 313
Score = 32.9 bits (74), Expect = 0.16
Identities = 11/64 (17%), Positives = 23/64 (35%)
Query: 11 KKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
K ++ K ++ E K K K K KK K ++++ +
Sbjct: 250 SKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAK 309
Query: 71 IEES 74
+++S
Sbjct: 310 VDKS 313
>2xzm_Y RPS6E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_Y
Length = 293
Score = 39.8 bits (92), Expect = 7e-04
Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 8/86 (9%)
Query: 2 RKRRGGAGEKKKRIEKRNKEEEKE------ENEQEEKEKEDVEEEKNKKKKKKKKKKKKK 55
RK+ A EK +R + ++E E +++ K + KK + KK
Sbjct: 190 RKKVYKA-EKTQRYV-KTNAAKEEYEKFLSEWKKQRAAKAHAASAPVVEAPKKVEAPKKV 247
Query: 56 KKKKKKKKEEQSVKEIEESLKERKEK 81
K K + + K +
Sbjct: 248 DPKAAKTTPAATKATPAATKVAPKTQ 273
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 40.0 bits (94), Expect = 8e-04
Identities = 8/96 (8%), Positives = 27/96 (28%), Gaps = 4/96 (4%)
Query: 3 KRRGGAGEKKKRIEKRNKEEEKEENEQEEKE-KEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
R + + +E+ ++ E N+ K +
Sbjct: 116 MRENFIPTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNY 175
Query: 62 KKEEQSVKEIEESLKERKEKTLTEDSQCDTM---IP 94
+ V+ + L++ ++ + + + +P
Sbjct: 176 ADMLKRVEPLRNELQKLEDDAKDNQQKLEALLLQVP 211
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear
protein complex, chromatin remodeling nucleosome
remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Length = 374
Score = 39.4 bits (91), Expect = 0.001
Identities = 12/80 (15%), Positives = 27/80 (33%)
Query: 2 RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
++ G ++ KE+E + +EE + E++N + KK K +
Sbjct: 294 KEFNAGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSNVGT 353
Query: 62 KKEEQSVKEIEESLKERKEK 81
++ E+
Sbjct: 354 EQLVAEKIPENETTHHHHHH 373
Score = 38.2 bits (88), Expect = 0.003
Identities = 10/78 (12%), Positives = 29/78 (37%)
Query: 8 AGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
E +R + EKE N + + K + + K+ +++ + +K+
Sbjct: 278 PVELARRGNTLLQCLEKEFNAGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDG 337
Query: 68 VKEIEESLKERKEKTLTE 85
V+ + +++ +
Sbjct: 338 VESKKAKIEDTSNVGTEQ 355
Score = 38.2 bits (88), Expect = 0.003
Identities = 14/83 (16%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 13 KRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKK-----KKKKKKEEQS 67
+ +EK ++ +++ K++ E K +++ + +K+ KK K E+ S
Sbjct: 290 QCLEKEFNAGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTS 349
Query: 68 VKEIEESLKERKEKTLTEDSQCD 90
E+ + E+ + T
Sbjct: 350 NVGTEQLVAEKIPENETTHHHHH 372
Score = 37.9 bits (87), Expect = 0.004
Identities = 13/71 (18%), Positives = 27/71 (38%)
Query: 3 KRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
++ AG K ++E E ++ +E D + + + KK K +
Sbjct: 293 EKEFNAGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSNVG 352
Query: 63 KEEQSVKEIEE 73
E+ ++I E
Sbjct: 353 TEQLVAEKIPE 363
Score = 37.1 bits (85), Expect = 0.007
Identities = 10/78 (12%), Positives = 24/78 (30%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
K R++K ++ ++ E ++ + E + KK K + ++
Sbjct: 296 FNAGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSNVGTEQ 355
Query: 61 KKKEEQSVKEIEESLKER 78
E+ E
Sbjct: 356 LVAEKIPENETTHHHHHH 373
Score = 36.3 bits (83), Expect = 0.013
Identities = 13/77 (16%), Positives = 32/77 (41%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
EK+ + K+ ++E++ + + EE + +K+ + KK K ++ +V
Sbjct: 293 EKEFNAGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSNVG 352
Query: 70 EIEESLKERKEKTLTED 86
+ ++ E T
Sbjct: 353 TEQLVAEKIPENETTHH 369
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 39.5 bits (93), Expect = 0.001
Identities = 12/64 (18%), Positives = 36/64 (56%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
E ++++++ KE++ QE ++ + + + + +++ + KK K+K+ ++ E +V
Sbjct: 398 ELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVD 457
Query: 70 EIEE 73
+I
Sbjct: 458 DIAM 461
Score = 32.6 bits (75), Expect = 0.22
Identities = 10/73 (13%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 12 KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
K R+ +E E ++ ++V +EK+ + ++ +K + +++ EQ
Sbjct: 384 KVRLRSFTTPPNLKELE---QKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTK 440
Query: 72 EESLKERKEKTLT 84
+ +++ ++
Sbjct: 441 KSWKEKQGQENSE 453
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 39.0 bits (90), Expect = 0.001
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 17 KRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQ 66
+ + ++K+ ++ K KK K ++KKKK+ K K + Q
Sbjct: 55 GQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQ 104
Score = 37.9 bits (87), Expect = 0.003
Identities = 13/58 (22%), Positives = 28/58 (48%)
Query: 15 IEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIE 72
I + + + ++K+ ++ KK K ++KKKK+ K K K ++ ++E
Sbjct: 54 IGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLE 111
Score = 34.8 bits (79), Expect = 0.035
Identities = 11/51 (21%), Positives = 26/51 (50%)
Query: 12 KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
+ +N ++++ K+ + +K K ++KKKK+ K K K+++
Sbjct: 55 GQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQR 105
Score = 34.4 bits (78), Expect = 0.041
Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 3 KRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
+ + R R K++ ++ + +K K + KKKK+ K K K+++ K
Sbjct: 55 GQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKP-----QEKKKKQPAKTKPGKRQRMALK 109
Query: 63 KEEQSVKEI 71
E + ++
Sbjct: 110 LEADRLFDV 118
Score = 33.6 bits (76), Expect = 0.084
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 40 EKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTLTEDSQC 89
+ ++KK+ K+ K KK K +E++ + + +R+ L ++
Sbjct: 65 PRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADR 114
Score = 33.2 bits (75), Expect = 0.094
Identities = 12/55 (21%), Positives = 25/55 (45%)
Query: 41 KNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTLTEDSQCDTMIPV 95
+ + ++KK+ K+ K KK K ++ K+ K K + + + D + V
Sbjct: 64 RPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDV 118
Score = 33.2 bits (75), Expect = 0.096
Identities = 10/66 (15%), Positives = 27/66 (40%)
Query: 4 RRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKK 63
+ + + + Q+++ + + K K ++KKKK+ K K K+++
Sbjct: 46 TTAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQR 105
Query: 64 EEQSVK 69
++
Sbjct: 106 MALKLE 111
Score = 30.5 bits (68), Expect = 0.64
Identities = 9/48 (18%), Positives = 22/48 (45%)
Query: 34 KEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
+ + + + ++KK+ K+ K KK + K+ ++ K + K
Sbjct: 55 GQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGK 102
Score = 29.0 bits (64), Expect = 2.5
Identities = 6/45 (13%), Positives = 20/45 (44%)
Query: 37 VEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
+ + + + + ++KK+ K+ + + K E+ K+ +
Sbjct: 54 IGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKT 98
Score = 28.6 bits (63), Expect = 2.9
Identities = 6/42 (14%), Positives = 19/42 (45%)
Query: 41 KNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKT 82
+ + + + ++KK+ K+ K+ + K++K+
Sbjct: 55 GQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPA 96
Score = 28.2 bits (62), Expect = 3.7
Identities = 6/54 (11%), Positives = 22/54 (40%)
Query: 28 EQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
+Q + + + + + + ++KK+ K+ + K + K+++
Sbjct: 43 QQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPA 96
Score = 27.9 bits (61), Expect = 5.6
Identities = 7/44 (15%), Positives = 21/44 (47%)
Query: 39 EEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKT 82
+ + + + + ++KK+ K+ + + +E K++ KT
Sbjct: 55 GQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKT 98
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 39.0 bits (90), Expect = 0.002
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
+ + EEE+ E+ + K+ E E+ + K K+K +K K + + +++ EQ K
Sbjct: 310 GQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKK 369
Query: 70 EIEESLKERKEK 81
+E KE +EK
Sbjct: 370 NLEAQHKELEEK 381
Score = 34.0 bits (77), Expect = 0.061
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
+ KK +E ++KE E++ + E+ EK + E ++ +++ + +K KKK K
Sbjct: 366 QMKKNLEAQHKELEEKRRQFED-EKANWEAQQRILEQQNSSRTLEKNKKKGK 416
Score = 33.3 bits (75), Expect = 0.12
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKK----KKKKKKKK 63
E ++R E+ K E + E EEK ++ +E+ N + +++ +++ +K KKK K
Sbjct: 359 ELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRTLEKNKKKGK 416
Score = 32.1 bits (72), Expect = 0.28
Identities = 20/97 (20%), Positives = 50/97 (51%), Gaps = 5/97 (5%)
Query: 10 EKKKRIEKRNKEEE--KEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
E+++ + K K E ++ E + KEK ++ + +++ ++ KK + + K+ EE+
Sbjct: 323 ERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEK- 381
Query: 68 VKEIEESLK--ERKEKTLTEDSQCDTMIPVFKKGVLY 102
++ E+ E +++ L + + T+ KKG ++
Sbjct: 382 RRQFEDEKANWEAQQRILEQQNSSRTLEKNKKKGKIF 418
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc
finger/C5-methyltransferase family; HET: DNA; 2.75A
{Mus musculus} PDB: 3av5_A* 3av6_A*
Length = 1330
Score = 39.2 bits (90), Expect = 0.002
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 12 KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
K+R ++ E+ E ++ E D EEK +K +KK + + + +++ K +
Sbjct: 3 KRRPKEAEPEQVAPETPEDRDE--DEREEKRRKTTRKKLESHTVPVQSRSERKAAQSKSV 60
Query: 72 EESLKERK 79
+ K
Sbjct: 61 IPKINSPK 68
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 38.3 bits (88), Expect = 0.003
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 32 KEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
KE+ E +K K++ K +K K KK + + ++ +E K
Sbjct: 341 KEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAK 390
Score = 38.3 bits (88), Expect = 0.003
Identities = 8/51 (15%), Positives = 22/51 (43%)
Query: 38 EEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTLTEDSQ 88
+ +K + K K++ K +K K ++ + + + E+ + + Q
Sbjct: 343 QAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQ 393
Score = 34.4 bits (78), Expect = 0.054
Identities = 9/58 (15%), Positives = 24/58 (41%)
Query: 24 KEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
KE+ ++ + + + K +K K KK + + + + I ++ +E +
Sbjct: 341 KEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADF 398
Score = 34.4 bits (78), Expect = 0.056
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 2/74 (2%)
Query: 17 KRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLK 76
K KE+ K+ E + +++ K +K K KK + K +
Sbjct: 338 KIVKEQAKKAAEASKAKRQ--ATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQED 395
Query: 77 ERKEKTLTEDSQCD 90
E + D
Sbjct: 396 ADFIAQGQEIKEGD 409
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 37.9 bits (88), Expect = 0.004
Identities = 14/85 (16%), Positives = 32/85 (37%)
Query: 11 KKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
K + E N E+EKE+ + + + V + + ++K +K E S +
Sbjct: 194 KARLKEMSNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFD 253
Query: 71 IEESLKERKEKTLTEDSQCDTMIPV 95
+ S E + + ++ +
Sbjct: 254 LPYSFVELTKDFEVRVHAPNGVLTI 278
Score = 33.7 bits (77), Expect = 0.088
Identities = 13/97 (13%), Positives = 36/97 (37%), Gaps = 12/97 (12%)
Query: 8 AGEKKKRIEK------------RNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKK 55
EK + + K + E KE ++ E+ + ++ ++ K + K+ +
Sbjct: 145 PSEKLETVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESLKARLKEMSNLE 204
Query: 56 KKKKKKKKEEQSVKEIEESLKERKEKTLTEDSQCDTM 92
K+K+K K + + ++ + + +
Sbjct: 205 KEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLI 241
>1j7n_A Lethal factor precursor; anthrax, lethal toxin, zinc
metalloprotease, mapkk, MEK; 2.30A {Bacillus anthracis}
SCOP: d.92.1.14 d.92.1.14 d.166.1.1 PDB: 1jky_A 1pwp_A*
1pwq_A* 1pwv_A 1zxv_A* 1pwu_A* 1pww_A 3kwv_C
Length = 776
Score = 38.1 bits (87), Expect = 0.005
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 6 GGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
GG G+ ++++ K +++ + + EE+ K E K K K + K ++ KK+ E+
Sbjct: 2 GGHGDVGMHVKEKEKNKDENKRKDEERNKTQEEHLKEIMKHIVKIEVKGEEAVKKEAAEK 61
Query: 66 QSVKEIEESLKERKE 80
K + L+ K
Sbjct: 62 LLEKVPSDVLEMYKA 76
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 37.4 bits (86), Expect = 0.005
Identities = 14/99 (14%), Positives = 42/99 (42%)
Query: 3 KRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
+++ + ++ + N EE+ + + +E + K+K +K++ KK+ + +K
Sbjct: 80 QKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEK 139
Query: 63 KEEQSVKEIEESLKERKEKTLTEDSQCDTMIPVFKKGVL 101
+ +E +K KE + + ++ + +
Sbjct: 140 LALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIY 178
Score = 30.5 bits (68), Expect = 0.71
Identities = 9/79 (11%), Positives = 29/79 (36%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
K I+ ++ + ++ + + K +++K K + K ++ + +
Sbjct: 15 HLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNA 74
Query: 70 EIEESLKERKEKTLTEDSQ 88
+I K+ E + +
Sbjct: 75 KIASIQKKMSEIKSERELR 93
Score = 28.5 bits (63), Expect = 2.9
Identities = 11/66 (16%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 16 EKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESL 75
K ++K + E+E + E++ K++ + ++ + + + K + ++ E+
Sbjct: 74 AKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKS--EKQEDLK 131
Query: 76 KERKEK 81
KE E
Sbjct: 132 KEMLEL 137
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_P
Length = 149
Score = 36.1 bits (83), Expect = 0.005
Identities = 17/72 (23%), Positives = 23/72 (31%), Gaps = 6/72 (8%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
E R+ K EK + KE K K K+ K K +KK
Sbjct: 84 EPNYRLRKVKILGEKPNTRRSFKEL------KRKIKRTSGKAITKLLSEKKGDTWASVQS 137
Query: 70 EIEESLKERKEK 81
+ + LK K
Sbjct: 138 KKSDHLKNFVAK 149
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 37.5 bits (86), Expect = 0.006
Identities = 11/76 (14%), Positives = 26/76 (34%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
E + E + E+E + +K + E EK +K+ + + + K E +
Sbjct: 670 EAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESR 729
Query: 70 EIEESLKERKEKTLTE 85
++ +
Sbjct: 730 AEAARIEGEGSVLQAK 745
Score = 37.1 bits (85), Expect = 0.010
Identities = 11/71 (15%), Positives = 33/71 (46%)
Query: 15 IEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEES 74
++ +++ + + + +E N ++ K + ++ +++ + + E Q + + E+
Sbjct: 640 VQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEA 699
Query: 75 LKERKEKTLTE 85
K RKE E
Sbjct: 700 EKARKELLELE 710
Score = 33.6 bits (76), Expect = 0.11
Identities = 13/81 (16%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 2 RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKK-KKKKKK 60
+ A + +R+E+ + + + ++ E E +E + + + K +
Sbjct: 667 NSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEA 726
Query: 61 KKKEEQSVKEIEESLKERKEK 81
+ + E + E E S+ + K K
Sbjct: 727 ESRAEAARIEGEGSVLQAKLK 747
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 36.7 bits (84), Expect = 0.007
Identities = 10/88 (11%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEE------KEENEQEEKEKEDVEEEKNKKKKKKKKKKKK 54
+ K R E+ + +KR E + + Q ++ + + +
Sbjct: 110 IEKWRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPS 169
Query: 55 KKKKKKKKKEEQSVKEIEESLKERKEKT 82
K+++++++ E++ + +E+ +
Sbjct: 170 KQQERRRRSREEAQAKAQEAEALYQACV 197
Score = 29.8 bits (66), Expect = 1.3
Identities = 13/80 (16%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNK-KKKKKKKKKKKKKKKKKKKKEEQSV 68
K+ IEK KE KE+ +E+K + + + + + ++ + + + + ++
Sbjct: 105 AKRTEIEKWRKEF-KEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQ 163
Query: 69 KEIEESLKERKEKTLTEDSQ 88
S ++ + + E++Q
Sbjct: 164 ASPGPSKQQERRRRSREEAQ 183
Score = 29.0 bits (64), Expect = 2.3
Identities = 7/91 (7%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 12 KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE------- 64
+ + +R+++ E +K+++++++ +++ + K ++ +
Sbjct: 139 QLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRRRSREEAQAKAQEAEALYQACVR 198
Query: 65 --EQSVKEIEESLKERKEKTLTEDSQCDTMI 93
+++E + + Q D ++
Sbjct: 199 EANARQQDLEIAKQRIVSHVRKLVFQGDEVL 229
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 35.9 bits (82), Expect = 0.007
Identities = 14/63 (22%), Positives = 28/63 (44%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
+ +R+ KK ++ E K++ + ++K + + K K KK + KK K+
Sbjct: 92 INRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPV 151
Query: 61 KKK 63
K
Sbjct: 152 GAK 154
Score = 35.9 bits (82), Expect = 0.008
Identities = 15/64 (23%), Positives = 30/64 (46%)
Query: 16 EKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESL 75
++N + ++ E E+ +E +++ N +KK+ +K + K K KK E +
Sbjct: 94 RRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGA 153
Query: 76 KERK 79
K K
Sbjct: 154 KGGK 157
Score = 33.6 bits (76), Expect = 0.048
Identities = 14/58 (24%), Positives = 23/58 (39%)
Query: 3 KRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
+ EK R K+ K + E+ + K + + K + KK K+ K KK
Sbjct: 101 SHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAKGGKK 158
Score = 32.8 bits (74), Expect = 0.070
Identities = 13/61 (21%), Positives = 27/61 (44%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
+ A +K E + K+ E ++ +++ + + + KK + KK K+ K K
Sbjct: 98 LDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAKGGK 157
Query: 61 K 61
K
Sbjct: 158 K 158
Score = 32.8 bits (74), Expect = 0.082
Identities = 14/80 (17%), Positives = 33/80 (41%)
Query: 2 RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
+K++ + I + EE + K+ E+ ++ K+KK +KK+ +K
Sbjct: 71 QKKKKRNVTVARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRK 130
Query: 62 KKEEQSVKEIEESLKERKEK 81
+ + + K+ K+
Sbjct: 131 LQGKDVKAAKKAETKKTKQP 150
Score = 31.7 bits (71), Expect = 0.18
Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 10 EKKKRIEKRNKE-EEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSV 68
+KKKR + E ++ D +K + +K ++ K+KK +KK+ ++ +
Sbjct: 72 KKKKRNVTVARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKL 131
Query: 69 KEIEESLKERKEKTLTE 85
+ + ++ E T+
Sbjct: 132 QGKDVKAAKKAETKKTK 148
Score = 30.9 bits (69), Expect = 0.33
Identities = 13/75 (17%), Positives = 32/75 (42%)
Query: 7 GAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQ 66
+KKK+ + +E +++++ K + +K ++ K+KK +K+
Sbjct: 68 DIAQKKKKRNVTVARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRA 127
Query: 67 SVKEIEESLKERKEK 81
K + +K K+
Sbjct: 128 DRKLQGKDVKAAKKA 142
Score = 30.1 bits (67), Expect = 0.62
Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 1/98 (1%)
Query: 3 KRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKK-KKKKKKKKKKKKKKKKK 61
+R + +K+ K E++ KN KK + +K ++ K+K
Sbjct: 58 RRLWKKVKATDIAQKKKKRNVTVARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQK 117
Query: 62 KKEEQSVKEIEESLKERKEKTLTEDSQCDTMIPVFKKG 99
K + K + L+ + K + T PV KG
Sbjct: 118 KANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAKG 155
Score = 28.6 bits (63), Expect = 1.8
Identities = 14/82 (17%), Positives = 32/82 (39%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
++ A + ++ +KRN + +E + KK + +K ++ K+KK
Sbjct: 59 RLWKKVKATDIAQKKKKRNVTVARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQKK 118
Query: 61 KKKEEQSVKEIEESLKERKEKT 82
E+ + + K+ K
Sbjct: 119 ANDIEKKRADRKLQGKDVKAAK 140
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 35.8 bits (82), Expect = 0.008
Identities = 15/70 (21%), Positives = 27/70 (38%)
Query: 5 RGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
R G I + ++ + Q E+ +E K K+ KK K K +
Sbjct: 80 RAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPK 139
Query: 65 EQSVKEIEES 74
++ VK ++ S
Sbjct: 140 QKIVKPVKVS 149
Score = 34.6 bits (79), Expect = 0.018
Identities = 10/60 (16%), Positives = 23/60 (38%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
K+ + ++ ++E+ + KE + ++ K K K K+K K +
Sbjct: 91 MAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSA 150
Score = 33.5 bits (76), Expect = 0.045
Identities = 12/81 (14%), Positives = 34/81 (41%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
+KR A + ++ I + + + Q+ + ++ E+ + K+ KK K+ KK
Sbjct: 68 QKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAM 127
Query: 61 KKKEEQSVKEIEESLKERKEK 81
+ + ++ + + +
Sbjct: 128 AAAKAPTKAAPKQKIVKPVKV 148
Score = 32.7 bits (74), Expect = 0.072
Identities = 11/63 (17%), Positives = 22/63 (34%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
+ +R E +K ++ KE + ++ K+ K K+K K K
Sbjct: 90 IMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVS 149
Query: 61 KKK 63
+
Sbjct: 150 APR 152
Score = 32.0 bits (72), Expect = 0.16
Identities = 10/79 (12%), Positives = 35/79 (44%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
+K+ R + + + + K + + E K ++++ + K+ KK K+ ++ ++
Sbjct: 69 KKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMA 128
Query: 70 EIEESLKERKEKTLTEDSQ 88
+ K ++ + + +
Sbjct: 129 AAKAPTKAAPKQKIVKPVK 147
Score = 31.6 bits (71), Expect = 0.21
Identities = 13/59 (22%), Positives = 22/59 (37%)
Query: 23 EKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
+ N++ E K E+ K+ KK K+ KK K ++ +K K
Sbjct: 91 MAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVS 149
Score = 30.4 bits (68), Expect = 0.49
Identities = 9/60 (15%), Positives = 26/60 (43%)
Query: 29 QEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTLTEDSQ 88
++ ++ + +++ + K+ KK K+ KK + K ++ ++K + S
Sbjct: 91 MAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSA 150
Score = 30.4 bits (68), Expect = 0.51
Identities = 7/54 (12%), Positives = 21/54 (38%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKK 63
++++ I + ++ ++ ++ K K+K K K + K+
Sbjct: 104 QREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR 157
Score = 30.0 bits (67), Expect = 0.76
Identities = 10/62 (16%), Positives = 24/62 (38%)
Query: 20 KEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERK 79
+ ++ E + ++E + KK K+ KK K + ++I + +K
Sbjct: 91 MAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSA 150
Query: 80 EK 81
+
Sbjct: 151 PR 152
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics,
NPPSFA, national project on P structural and functional
analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1
PDB: 2dma_A 4dt0_A
Length = 198
Score = 36.1 bits (83), Expect = 0.009
Identities = 11/74 (14%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 12 KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
+ I K + + + + ++ E+ K + ++ + K + ++ K + E + + I
Sbjct: 8 IQEINKEAERKIEYI---LNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRII 64
Query: 72 EESLKERKEKTLTE 85
+ E + K L
Sbjct: 65 ANARLEVRRKRLAI 78
Score = 35.0 bits (80), Expect = 0.023
Identities = 12/86 (13%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 15 IEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKK--KKKKKEEQSVKEIE 72
E +E KE + E + ++ K K++ ++ + K + ++ K + + K+
Sbjct: 4 AELIIQEINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRI 63
Query: 73 ESLKERKEKTLTEDSQCDTMIPVFKK 98
+ + + Q + + V ++
Sbjct: 64 IANARLEVRRKRLAIQEEIISSVLEE 89
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 36.8 bits (85), Expect = 0.010
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 12 KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
K +KR + EEK + KEK K++ +K++K+++ + E + +
Sbjct: 380 VKENQKRRETEEKMRRAKLAKEK------AEKERLEKQQKREQLIDMNAEGDETGVMDSL 433
Query: 72 EESLK 76
E+L+
Sbjct: 434 LEALQ 438
Score = 33.3 bits (76), Expect = 0.10
Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 20 KEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEES 74
+ KE ++ E E E+ + K K+K +K++ +K++K+++ E +E+
Sbjct: 377 LQAVKENQKRRETE----EKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDET 427
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 36.7 bits (84), Expect = 0.012
Identities = 10/65 (15%), Positives = 28/65 (43%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
+++ +R+ + K + + + K E KK ++ +++ K + + +EE
Sbjct: 481 KEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQI 540
Query: 70 EIEES 74
+ S
Sbjct: 541 ALGTS 545
Score = 34.3 bits (78), Expect = 0.055
Identities = 8/79 (10%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKK---KKKKKKKKKKKKKEEQ 66
KK+++ ++ + + + + + ++ KKK ++ + K + + ++E +
Sbjct: 479 AKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENK 538
Query: 67 SVKEIEESLKERKEKTLTE 85
+ L +
Sbjct: 539 QIALGTSKLNYLDPRITVA 557
Score = 34.0 bits (77), Expect = 0.078
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 18 RNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKE 77
+ K + ++E+ + + K K K K KK + KKK Q + E+ +K
Sbjct: 470 MMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQ--RLEEQLMKL 527
Query: 78 RKEKTLTED 86
+ T E+
Sbjct: 528 EVQATDREE 536
Score = 31.3 bits (70), Expect = 0.59
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 40 EKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
+ K K KK + KKKK KK+EEQ K EE K
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIK 42
Score = 31.3 bits (70), Expect = 0.60
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 24 KEENEQEEKEKEDVEE-EKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKT 82
+ EQ + D++ + + K K K KK + KKK + + E +E+
Sbjct: 478 DAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREEN 537
Score = 29.3 bits (65), Expect = 2.0
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 39 EEKNKKKKKKKKKKKKKKKKKKKKKEE 65
+ KNK K KK + KKKK KK++E+
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQ 27
Score = 28.6 bits (63), Expect = 3.4
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 37 VEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
+ + +K+ K++K K K++ +K +E
Sbjct: 135 FKAQTEARKQMSKEEKLKIKEENEKLLKE 163
Score = 27.8 bits (61), Expect = 7.1
Identities = 12/71 (16%), Positives = 28/71 (39%)
Query: 3 KRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
+ + KK +E + K ++ E + + E + + E+NK+ K +
Sbjct: 498 AKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVA 557
Query: 63 KEEQSVKEIEE 73
++ IE+
Sbjct: 558 WCKKWGVPIEK 568
Score = 27.4 bits (60), Expect = 8.1
Identities = 11/93 (11%), Positives = 31/93 (33%), Gaps = 8/93 (8%)
Query: 1 MRKRRGGAGEKKKRIEKRNKE-----EEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKK 55
+ K + N+ + + ++ + K KK++ ++
Sbjct: 431 LTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRD 490
Query: 56 KKKKKK---KKEEQSVKEIEESLKERKEKTLTE 85
K K ++ K++ ES K+ ++ +
Sbjct: 491 LKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQ 523
>2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA
synthetase, ATP-binding, ligas nucleotide-binding,
protein biosynthesis; NMR {Brugia malayi}
Length = 113
Score = 34.2 bits (78), Expect = 0.012
Identities = 10/64 (15%), Positives = 31/64 (48%)
Query: 24 KEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTL 83
+++ ++ E K K+ +++ K +K K +++ + ++ +L+E K+ +
Sbjct: 45 TKKDGKQVWEAASKTALKKSWKRYEQEMLKNEKVAAKMLEKDATEVGVKAALEEAKKVQI 104
Query: 84 TEDS 87
D+
Sbjct: 105 ELDT 108
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 36.3 bits (83), Expect = 0.013
Identities = 11/72 (15%), Positives = 31/72 (43%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
+ K EK E+ + + EK+ +E++K + K++K + + +
Sbjct: 355 AELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAG 414
Query: 70 EIEESLKERKEK 81
+ +++++K
Sbjct: 415 GSQTLKRDKEKK 426
Score = 34.0 bits (77), Expect = 0.077
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 11 KKKRIEKRNKEEEKEEN-----EQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
+ KR E + ++KEE Q KEKE +E K+ +K + KK + +KKK E+
Sbjct: 325 EAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLED 384
Query: 66 QSVKEIEESLKERKEKTLTEDSQ 88
+ K +++ + K++ +
Sbjct: 385 K-KKSLDDEVNAFKQRKTAAELL 406
Score = 33.6 bits (76), Expect = 0.096
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 12/99 (12%)
Query: 10 EKKKRIEKRNKEEEKE----------ENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKK 59
K+ +++E+E E E E KE E EK + KK + +KKK + K
Sbjct: 326 AKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDK 385
Query: 60 KKKKEEQSVKEIEESLKERKEKTLTEDSQCDTMIPVFKK 98
KK +++ + K E ++ SQ + +
Sbjct: 386 KKSLDDE--VNAFKQRKTAAELLQSQGSQAGGSQTLKRD 422
Score = 31.6 bits (71), Expect = 0.39
Identities = 11/72 (15%), Positives = 36/72 (50%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
EK+ +++ KE ++ + ++ +++ ++ ++KKK + K++K + +
Sbjct: 352 EKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGS 411
Query: 70 EIEESLKERKEK 81
+ S +++K
Sbjct: 412 QAGGSQTLKRDK 423
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 36.3 bits (83), Expect = 0.014
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 20 KEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERK 79
+ E+ ++ EK V + K + KK KK+K +++KK+E KE E ++
Sbjct: 797 RMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKG 856
Query: 80 EKTLTEDSQ 88
K E+ +
Sbjct: 857 IKETKENDE 865
Score = 31.7 bits (71), Expect = 0.44
Identities = 15/75 (20%), Positives = 32/75 (42%)
Query: 24 KEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTL 83
E ++ ++ + + K + KK KK+K ++E++ E +E +E +K +
Sbjct: 798 MYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGI 857
Query: 84 TEDSQCDTMIPVFKK 98
E + D K
Sbjct: 858 KETKENDEEFYKNKY 872
Score = 31.3 bits (70), Expect = 0.54
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 7/102 (6%)
Query: 37 VEEEKNKKKKKKKK-------KKKKKKKKKKKKKEEQSVKEIEESLKERKEKTLTEDSQC 89
EE K+ +K + K + KK KK+K ++ +E ++ KE+ +
Sbjct: 799 YEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIK 858
Query: 90 DTMIPVFKKGVLYKGIYCPSLTNSFREPSLEMSYQRYSHRQR 131
+T + + N R + Y + R
Sbjct: 859 ETKENDEEFYKNKYSSKPYKVDNMTRILPQQSRYISFIKDDR 900
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 36.2 bits (83), Expect = 0.015
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKN------KKKKKKKKKKKKKKKKKKKKK 63
EK + +NK + + ++K KE E ++ KK ++ K++ K KK
Sbjct: 375 EKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTS 434
Query: 64 EEQSVKEIEESLKERKEK 81
E + ++ +S +EK
Sbjct: 435 EGVTNEKGTDSQAMEEEK 452
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 35.9 bits (83), Expect = 0.015
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 24 KEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKE 77
+ + + E E +D E + + +K +KKKKKK K E + E E +
Sbjct: 346 EPDLYKSEMEVQDAELKALLQSSASRKTQKKKKKKASKTAENATSGETLEENEA 399
Score = 28.2 bits (63), Expect = 4.0
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 37 VEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKE 80
V++ + K + +K +KKKKKK + E+L+E +
Sbjct: 356 VQDAELKALLQSSASRKTQKKKKKKASKTAENATSGETLEENEA 399
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A
{Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Length = 522
Score = 36.2 bits (83), Expect = 0.015
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
+RK+ A KK +I R E E + + + + K K + +
Sbjct: 97 LRKQLAEALGKKYKIGIRGIEVESFIIKVP-------ADHELRMLKVPYIKSMENIEGGI 149
Query: 61 KKKEEQSVKEIEESLKERKEKTLTED 86
+ + E E++ + +R L E
Sbjct: 150 QLELEVGEAEMKNRVPDRILTLLEEK 175
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 35.6 bits (82), Expect = 0.017
Identities = 10/81 (12%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKK--KKKKKKKKKKKKKKKKKEEQS 67
+K ++ NK + + +++ + + EK ++ +++ K K + + +
Sbjct: 254 QKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPT 313
Query: 68 VKEIEESLKERKEKTLTEDSQ 88
E++E K + ++
Sbjct: 314 DTEMKEEQKSNTAGSQSQVET 334
Score = 32.2 bits (73), Expect = 0.22
Identities = 10/62 (16%), Positives = 25/62 (40%)
Query: 11 KKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
+++ + +E++ N E +E+ + + + K+++K QS E
Sbjct: 274 QQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQKSNTAGSQSQVE 333
Query: 71 IE 72
E
Sbjct: 334 TE 335
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 34.6 bits (79), Expect = 0.017
Identities = 15/81 (18%), Positives = 36/81 (44%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
++RR + I E +++ ++ + ++ E ++ K++ KK K +KK KK
Sbjct: 71 KKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKK 130
Query: 61 KKKEEQSVKEIEESLKERKEK 81
+ + + + +R K
Sbjct: 131 AEVAKSQKTQSKGGATQRGAK 151
Score = 32.3 bits (73), Expect = 0.13
Identities = 10/63 (15%), Positives = 24/63 (38%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
+KR + E +E ++ + ++++K E +K + K ++ K
Sbjct: 94 QKKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKGP 153
Query: 61 KKK 63
K
Sbjct: 154 KIG 156
Score = 30.8 bits (69), Expect = 0.44
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 18 RNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKE 77
+ K EK E +E + E K + KK K +KK KK + K +K + + K
Sbjct: 94 QKKRSEKPEVRDAAREA-ALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKG 152
Query: 78 RKEK 81
K
Sbjct: 153 PKIG 156
Score = 28.9 bits (64), Expect = 1.5
Identities = 10/53 (18%), Positives = 25/53 (47%)
Query: 30 EEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKT 82
++K E E ++ ++ K++ KK K +KK +++ + + + T
Sbjct: 94 QKKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGAT 146
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 35.7 bits (83), Expect = 0.019
Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 6/98 (6%)
Query: 2 RKRRGGAGEK-KKRIEKRNKEEEK--EENEQEEKEKE---DVEEEKNKKKKKKKKKKKKK 55
+GG E K +KR E E + ++ + D++E K +K+ K+
Sbjct: 8 LVEKGGDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRF 67
Query: 56 KKKKKKKKEEQSVKEIEESLKERKEKTLTEDSQCDTMI 93
K K+ K +++ KE EK D + I
Sbjct: 68 KAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKI 105
Score = 29.1 bits (66), Expect = 2.5
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 44 KKKKKKKKKKKKKKKKKKKKEEQSVKE 70
K KK K K K ++ K
Sbjct: 450 KNTTSVKKAKGKNPKNTTSVKKAKGKN 476
Score = 28.4 bits (64), Expect = 3.9
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 34 KEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
KE + + KK K K K KK K K
Sbjct: 446 KELPKNTTSVKKAKGKNPKNTTSVKKAKGKN 476
Score = 28.0 bits (63), Expect = 6.3
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 44 KKKKKKKKKKKKKKKKKKKKEEQSVKE 70
K+ K KK K K K SVK+
Sbjct: 445 IKELPKNTTSVKKAKGKNPKNTTSVKK 471
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 33.8 bits (78), Expect = 0.020
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 35 EDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
++V E + K+ +K++ KK K E +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEAA 112
Score = 30.4 bits (69), Expect = 0.34
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 34 KEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
KE V E K+ +K++ KK K E
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGE 110
Score = 30.0 bits (68), Expect = 0.38
Identities = 5/32 (15%), Positives = 13/32 (40%)
Query: 43 KKKKKKKKKKKKKKKKKKKKKEEQSVKEIEES 74
+ + + K+ +K+E + K E +
Sbjct: 81 EVVPEGYEMKRVGDYYVFEKRESKKSKGGEAA 112
Score = 30.0 bits (68), Expect = 0.39
Identities = 5/36 (13%), Positives = 14/36 (38%)
Query: 32 KEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
++E + + K+ +K++ KK +
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGG 109
Score = 28.8 bits (65), Expect = 1.1
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 33 EKEDVEEEKNKKKKKKKKKKKKKKKKKKKKK 63
++ E + K+ +K++ KK K +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGE 110
Score = 28.5 bits (64), Expect = 1.4
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 31 EKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
++ + E K +K++ KK K +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 28.5 bits (64), Expect = 1.5
Identities = 3/31 (9%), Positives = 13/31 (41%)
Query: 40 EKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
++ + + K+ +K++ ++ E
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGE 110
Score = 27.7 bits (62), Expect = 2.3
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 32 KEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKK 63
KE E + +K++ KK K +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 27.3 bits (61), Expect = 3.3
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 43 KKKKKKKKKKKKKKKKKKKKKEEQSVKEIEES 74
K+ + + K+ +K E + E+
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Length = 135
Score = 34.2 bits (78), Expect = 0.021
Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
E R+ + E+ E+ +++++ ++KN+ KK K+ KK ++ +
Sbjct: 86 EPTYRLVRYGLAEKVEKASRQQRK-----QKKNRDKKIFGTGKRLAKKVARRNAD 135
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group,
transcription, LSP1, mitochon transcription-DNA complex;
HET: DNA; 2.50A {Homo sapiens}
Length = 238
Score = 35.2 bits (80), Expect = 0.022
Identities = 11/50 (22%), Positives = 27/50 (54%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKK 59
EK+ I+ ++E + NE + E++ +E + ++ KK++K ++
Sbjct: 188 EKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRKYGAEE 237
Score = 29.4 bits (65), Expect = 1.4
Identities = 9/51 (17%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 21 EEEKEENEQE-EKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
+ EKE Q ++++ E +++ + +K ++ KK+ + E
Sbjct: 186 DSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRKYGAE 236
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, cell cycle; HET: GTP
GDP; 4.17A {Artificial gene}
Length = 240
Score = 34.9 bits (79), Expect = 0.024
Identities = 16/81 (19%), Positives = 32/81 (39%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
K +K K N++ ++ E + EK + E E ++ ++ K K+K
Sbjct: 141 WIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKL 200
Query: 61 KKKEEQSVKEIEESLKERKEK 81
+K E + + E E+
Sbjct: 201 AQKMESNKENREAHFAAMLER 221
Score = 34.2 bits (77), Expect = 0.041
Identities = 13/80 (16%), Positives = 37/80 (46%)
Query: 2 RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
R+ A ++ + + ++ EE ++ +E + +EK +K + K+ +K ++ +
Sbjct: 109 REAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRKYQEAELL 168
Query: 62 KKEEQSVKEIEESLKERKEK 81
K + + E ++ E+
Sbjct: 169 KHLAEKREHEREVIQRAIEE 188
Score = 33.4 bits (75), Expect = 0.075
Identities = 11/79 (13%), Positives = 39/79 (49%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
++K + + +E +E + E+ +++ ++ +++ ++ K K+K Q ++
Sbjct: 95 KEKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKME 154
Query: 70 EIEESLKERKEKTLTEDSQ 88
+E+ K ++ + L ++
Sbjct: 155 SNKENRKYQEAELLKHLAE 173
Score = 33.0 bits (74), Expect = 0.12
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
+ ++ E +K E + E+ E E + + EE N K K+K +K + K
Sbjct: 149 LAQKMESNKENRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNK 208
Query: 61 KKKEEQSVKEIEESLKERKEK 81
+ +E L+ +EK
Sbjct: 209 ENRE----AHFAAMLERLQEK 225
Score = 32.6 bits (73), Expect = 0.14
Identities = 13/84 (15%), Positives = 30/84 (35%)
Query: 2 RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
+ + +R + EE + KEK + E NK+ ++ ++ ++K
Sbjct: 65 LLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQEKD 124
Query: 62 KKEEQSVKEIEESLKERKEKTLTE 85
K E+ + E + +
Sbjct: 125 KHAEEVRQRAIEENNNWIKMAKEK 148
Score = 32.6 bits (73), Expect = 0.14
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 2 RKRRGGAGEKKKRIEKRNKEEEKEE-NEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
++ A K EKR E E + +E + +EK +K + K+ ++
Sbjct: 159 NRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAM 218
Query: 61 KKKEEQSVKEIEESLKERKEK 81
++ ++ K EE K ++ K
Sbjct: 219 LERLQEKDKHAEEVRKNKELK 239
Score = 32.2 bits (72), Expect = 0.22
Identities = 13/72 (18%), Positives = 33/72 (45%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
+ K + E KE E + +EK+K ++ +++ ++ K +E+ +
Sbjct: 92 KMAKEKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQ 151
Query: 70 EIEESLKERKEK 81
++E + + RK +
Sbjct: 152 KMESNKENRKYQ 163
Score = 31.5 bits (70), Expect = 0.36
Identities = 9/72 (12%), Positives = 32/72 (44%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
++ + +E+ + + KE + ++ ++K K ++ +++ ++ +K
Sbjct: 84 IEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIK 143
Query: 70 EIEESLKERKEK 81
+E L ++ E
Sbjct: 144 MAKEKLAQKMES 155
Score = 31.5 bits (70), Expect = 0.36
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Query: 2 RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVE-EEKNKKKKKKKKKKKKKKKKKK 60
R++ A K EKR E E + EE +EK +K + K+ ++
Sbjct: 57 RRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAM 116
Query: 61 KKKEEQSVKEIEESLKERKEKTLTE 85
++ ++ K EE + E+
Sbjct: 117 LERLQEKDKHAEEVRQRAIEENNNW 141
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 35.7 bits (83), Expect = 0.025
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 20 KEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE-------QSVKEIE 72
K E E + E + KKK + K+K+K + K+E SV E+E
Sbjct: 3 KAENYELYQVELGPGPSGDMAAKMSKKKAGRGGGKRKEKLENMKKEMEINDHQLSVAELE 62
Query: 73 ESLKERKEKTLTED 86
+ + K L+
Sbjct: 63 QKYQTSATKGLSAS 76
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 35.0 bits (80), Expect = 0.026
Identities = 14/69 (20%), Positives = 29/69 (42%)
Query: 13 KRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIE 72
+ I+ + EE ++ KK KK+ KKK+ + K +++ V + +
Sbjct: 225 QYIKNSVTPDMMEEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKK 284
Query: 73 ESLKERKEK 81
S +E+
Sbjct: 285 ASFLRAQER 293
Score = 30.8 bits (69), Expect = 0.67
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 22 EEKEENEQEEKEKEDVEEEKNKKKKKKKKK----KKKKKKKKKKKKEEQSVKEIEES 74
++ +E E +++ KKK+ + K +KK + +KK ++ + ES
Sbjct: 241 KKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAES 297
Score = 30.0 bits (67), Expect = 1.1
Identities = 14/69 (20%), Positives = 27/69 (39%)
Query: 12 KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
K + EE ++ +E E++ K+ KKK+ + K +KK + Q
Sbjct: 228 KNSVTPDMMEEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASF 287
Query: 72 EESLKERKE 80
+ + E
Sbjct: 288 LRAQERAAE 296
Score = 30.0 bits (67), Expect = 1.3
Identities = 13/58 (22%), Positives = 23/58 (39%)
Query: 8 AGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
+E+ K+ E EK+ +E K K+ + K +KK + +KK
Sbjct: 229 NSVTPDMMEEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKAS 286
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 35.2 bits (80), Expect = 0.026
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 2 RKRRGGAGEKKKRIEKRNKEEEKEENEQEE----KEKEDVE-EEKNKKKKKKKKKKKKKK 56
+K G KK++ K +K+ E K + E + K +KK K +K +
Sbjct: 9 KKVATVPGTLKKKVPAGPKTLKKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKAR 68
Query: 57 KKKKKKKEEQSVKEIEESLKERKE 80
+K +K + KE + +
Sbjct: 69 RKLIYEKAKHYHKEYRQMYRTEIR 92
Score = 34.8 bits (79), Expect = 0.029
Identities = 14/72 (19%), Positives = 31/72 (43%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
+KKK ++K + +K+ + KKK++ + K K+ +KK + K
Sbjct: 7 KKKKVATVPGTLKKKVPAGPKTLKKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLRK 66
Query: 70 EIEESLKERKEK 81
+ + E+ +
Sbjct: 67 ARRKLIYEKAKH 78
Score = 31.8 bits (71), Expect = 0.31
Identities = 13/74 (17%), Positives = 26/74 (35%)
Query: 24 KEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTL 83
K N E K K ++ K +K ++K +K K K+ Q + + ++
Sbjct: 43 KRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGN 102
Query: 84 TEDSQCDTMIPVFK 97
+ V +
Sbjct: 103 FYVPAEPKLAFVIR 116
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right
handed coiled-coil, ATPase/SY ATP binding, membrane,
hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E
3j0j_J
Length = 187
Score = 34.5 bits (79), Expect = 0.026
Identities = 10/69 (14%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
E K KR EE+ + Q + +E + ++ + + + + + ++
Sbjct: 23 EAKAEAVKREAEEKAKALLQARERA--LEAQYRAALRRAESAGELLVATARTQARGEVLE 80
Query: 70 EIEESLKER 78
E+ ++E
Sbjct: 81 EVRRRVREA 89
Score = 31.4 bits (71), Expect = 0.26
Identities = 9/61 (14%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 21 EEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKE 80
E E + QE + K + + + ++K K + +++ + + + + E L
Sbjct: 12 EAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRR-AESAGELLVATA 70
Query: 81 K 81
+
Sbjct: 71 R 71
Score = 29.1 bits (65), Expect = 1.4
Identities = 7/57 (12%), Positives = 24/57 (42%)
Query: 23 EKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERK 79
+E + + ++ E + K++ ++K K + +++ E Q + + +
Sbjct: 8 SQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGE 64
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil,
hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Length = 251
Score = 34.8 bits (79), Expect = 0.027
Identities = 13/75 (17%), Positives = 29/75 (38%)
Query: 16 EKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESL 75
+ + KE +E K+ + E K + + + K +++ K+E + I+E +
Sbjct: 121 QIAELKALKESSESNIKDIKKKLEAKRLDRIQVMMRSTSDKAAQERLKKEINNSHIQEVV 180
Query: 76 KERKEKTLTEDSQCD 90
+ K T
Sbjct: 181 QTIKLLTEKTARYQQ 195
Score = 31.7 bits (71), Expect = 0.31
Identities = 16/74 (21%), Positives = 33/74 (44%)
Query: 12 KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
++ + + +E+ EQ K E E++ + K K+ + K KKK E + + I
Sbjct: 92 EEYHDGIRRRKEQHATEQTAKITELAREKQIAELKALKESSESNIKDIKKKLEAKRLDRI 151
Query: 72 EESLKERKEKTLTE 85
+ ++ +K E
Sbjct: 152 QVMMRSTSDKAAQE 165
Score = 30.5 bits (68), Expect = 0.65
Identities = 13/83 (15%), Positives = 40/83 (48%)
Query: 3 KRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
K++ A + +K E+ +KE + ++ + K +K + ++K ++
Sbjct: 140 KKKLEAKRLDRIQVMMRSTSDKAAQERLKKEINNSHIQEVVQTIKLLTEKTARYQQKLEE 199
Query: 63 KEEQSVKEIEESLKERKEKTLTE 85
K+ ++++ I+E + +++ + E
Sbjct: 200 KQAENLRAIQEKEGQLQQEAVAE 222
Score = 29.8 bits (66), Expect = 1.1
Identities = 11/82 (13%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
E + + K E+ + ++ +EE++ + + ++K+ + +++ + EE+
Sbjct: 170 EINNSHIQEVVQTIKLLTEKTARYQQKLEEKQAENLRAIQEKEGQLQQEAVAEYEEKLKT 229
Query: 70 ---EIEESLKERKEKTLTEDSQ 88
E++E +K ++ + +
Sbjct: 230 LTVEVQEMVKNYMKEVFPDGPE 251
Score = 27.8 bits (61), Expect = 5.2
Identities = 15/71 (21%), Positives = 31/71 (43%)
Query: 19 NKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKER 78
N +E + E + ++++ K K KK++K+ K+ ++K K + + + L
Sbjct: 6 NMKEVTQLPEPQTASLAELQQMKLFLKLLKKQEKELKELERKGSKRREELLQKYSVLFLE 65
Query: 79 KEKTLTEDSQC 89
DSQ
Sbjct: 66 PVYPRGLDSQV 76
Score = 27.5 bits (60), Expect = 6.2
Identities = 15/68 (22%), Positives = 23/68 (33%)
Query: 21 EEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKE 80
E E + E + E N K KKK + K+ + + + E KE
Sbjct: 114 TELAREKQIAELKALKESSESNIKDIKKKLEAKRLDRIQVMMRSTSDKAAQERLKKEINN 173
Query: 81 KTLTEDSQ 88
+ E Q
Sbjct: 174 SHIQEVVQ 181
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 34.9 bits (81), Expect = 0.029
Identities = 7/46 (15%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 20 KEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
+E K+ + + K ++ KK + +KK ++
Sbjct: 232 NVYTEEVLADIAKD-MVNDPNYDSVKVEETDDPNKKTRTVEKKVKK 276
Score = 34.5 bits (80), Expect = 0.035
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 19 NKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
E E + K+ V + K ++ KK + +KK +
Sbjct: 229 LHENVYTEEVLADIAKDMVNDPNYDSVKVEETDDPNKKTRTVEKKVK 275
Score = 32.6 bits (75), Expect = 0.18
Identities = 5/42 (11%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKK 51
++ + K+ + + + E+ ++ K + +KK
Sbjct: 234 YTEEVLADIAKDMVNDP-NYDSVKVEETDDPNKKTRTVEKKV 274
Score = 28.7 bits (65), Expect = 2.7
Identities = 8/45 (17%), Positives = 14/45 (31%)
Query: 9 GEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKK 53
E E + N+ + E + KK + +KK
Sbjct: 230 HENVYTEEVLADIAKDMVNDPNYDSVKVEETDDPNKKTRTVEKKV 274
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule,
tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus
norvegicus} PDB: 3ryf_E* 3ryh_E* 3ryi_E* 1sa0_E* 1sa1_E*
1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E*
3n2g_E* 3n2k_E*
Length = 143
Score = 33.5 bits (76), Expect = 0.039
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 10 EKKKRIEKRNKEEEKE------ENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKK 63
+K + E+R K +E E E + E+E E+N K K+K +K + K+
Sbjct: 50 KKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKEN 109
Query: 64 EEQSVKEIEESLKERKEK 81
E + + E L+E+ +
Sbjct: 110 REAHLAAMLERLQEKDKH 127
Score = 29.3 bits (65), Expect = 1.1
Identities = 17/86 (19%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 2 RKRRGGAGEKKKRIEKRNKEEEK-----EENEQEEKEKEDVEEEKNKKKKKKKKKKKKKK 56
R++ A K EKR E E EEN K ++ +K + K+ ++
Sbjct: 58 RRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAM 117
Query: 57 KKKKKKKEEQSVKEIEESLKERKEKT 82
++ ++K++ +E+ ++ + ++E +
Sbjct: 118 LERLQEKDK-HAEEVRKNKELKEEAS 142
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 35.0 bits (81), Expect = 0.040
Identities = 6/44 (13%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 38 EEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
+E +++K + + +++ + ++K +EE +E
Sbjct: 728 FQESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEE--REELRT 769
Score = 32.0 bits (73), Expect = 0.38
Identities = 5/42 (11%), Positives = 19/42 (45%)
Query: 26 ENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
E E+ K + + + + +++ K ++++E ++
Sbjct: 728 FQESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRT 769
Score = 29.3 bits (66), Expect = 2.2
Identities = 5/44 (11%), Positives = 18/44 (40%)
Query: 26 ENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
+ QE +E+ + ++ + +++ K ++ E+
Sbjct: 726 DRFQESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRT 769
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 33.7 bits (77), Expect = 0.041
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 32 KEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
EKE + + ++ +KKK +KK KK+K E
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
Score = 33.4 bits (76), Expect = 0.071
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 30 EEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
EKE+ V + + + +KKK +KK KK+K +E
Sbjct: 151 TEKEQI-VPKPEEEVAQKKKISQKKLKKQKLMARE 184
Score = 30.7 bits (69), Expect = 0.47
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 28 EQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
E+E+ + EE KKK +KK KK+K ++
Sbjct: 152 EKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
Score = 30.3 bits (68), Expect = 0.60
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 25 EENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKK 58
E EQ + E+ +K K +KK KK+K ++
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
Score = 30.3 bits (68), Expect = 0.74
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 29 QEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
E+++ EE+ +KKK +KK KK+K ++
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
Score = 29.5 bits (66), Expect = 1.0
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 38 EEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
E+E+ K +++ +KKK +KK KK++ +E
Sbjct: 152 EKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
Score = 28.7 bits (64), Expect = 2.2
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 24 KEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKK 57
E+ + K +E+V ++K +KK KK+K ++
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
Score = 28.0 bits (62), Expect = 3.6
Identities = 8/33 (24%), Positives = 20/33 (60%)
Query: 37 VEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
+ E++ K +++ +KKK +KK K+++ +
Sbjct: 150 LTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMA 182
Score = 28.0 bits (62), Expect = 4.2
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 35 EDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQ 66
E + EK + K +++ +KKK +KK ++Q
Sbjct: 147 EMILTEKEQIVPKPEEEVAQKKKISQKKLKKQ 178
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 33.7 bits (76), Expect = 0.044
Identities = 5/43 (11%), Positives = 22/43 (51%)
Query: 40 EKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKT 82
E + +K+K ++ K+ ++++ + + + ++ ++E
Sbjct: 134 ENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEAD 176
Score = 31.4 bits (70), Expect = 0.30
Identities = 5/62 (8%), Positives = 29/62 (46%)
Query: 12 KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
++ + + +E + E ++ + + + K+ ++++ + + + K++ + K+
Sbjct: 115 RREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQE 174
Query: 72 EE 73
+
Sbjct: 175 AD 176
Score = 28.7 bits (63), Expect = 2.6
Identities = 10/74 (13%), Positives = 29/74 (39%), Gaps = 13/74 (17%)
Query: 26 ENEQEEK---------EKEDVEEEKNKK----KKKKKKKKKKKKKKKKKKKEEQSVKEIE 72
+NE EE+ + V +E ++ + +K+K ++ K+ ++ +
Sbjct: 103 DNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTP 162
Query: 73 ESLKERKEKTLTED 86
++ ++ D
Sbjct: 163 QNKQDVPATKQEAD 176
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP:
h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 34.2 bits (78), Expect = 0.047
Identities = 15/76 (19%), Positives = 35/76 (46%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
+KK ++ K +KE + ++ E +K+ E+ + + + +KK K + + +
Sbjct: 5 KKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEAL 64
Query: 70 EIEESLKERKEKTLTE 85
+ + E EK T+
Sbjct: 65 KDAQEKLELAEKKATD 80
Score = 31.2 bits (70), Expect = 0.47
Identities = 11/82 (13%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKE------DVEEEKNKKKKKKKKKKKKKKKKKKKKK 63
++ + EK ++++ E+E ++E + + + ++ K +K +
Sbjct: 199 TVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLED 258
Query: 64 EEQSVKEIEESLKERKEKTLTE 85
E + K +++ E + L +
Sbjct: 259 ELYAQKLKYKAISEELDHALND 280
Score = 30.8 bits (69), Expect = 0.57
Identities = 13/72 (18%), Positives = 32/72 (44%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
++ ++K+ K E E ++ E K+ E+ + +KK + ++ + E+ +
Sbjct: 41 DELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELD 100
Query: 70 EIEESLKERKEK 81
+E L +K
Sbjct: 101 RAQERLATALQK 112
Score = 29.6 bits (66), Expect = 1.4
Identities = 11/78 (14%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 10 EKKKRIEKRNKE--EEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
+ R ++ E +++ + E E + E ++K + +KK +
Sbjct: 31 AAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNR 90
Query: 68 VKEIEESLKERKEKTLTE 85
++ E +R ++ L
Sbjct: 91 RIQLFEEELDRAQERLAT 108
Score = 29.6 bits (66), Expect = 1.6
Identities = 10/76 (13%), Positives = 30/76 (39%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
E + ++ +E+ E EK+ D E + ++ + +++ + +++
Sbjct: 54 EDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKL 113
Query: 70 EIEESLKERKEKTLTE 85
E E + E+ +
Sbjct: 114 EEAEKAADESERGMKV 129
Score = 29.2 bits (65), Expect = 1.7
Identities = 9/73 (12%), Positives = 36/73 (49%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
+ ++K ++ + + + E EK+ + E + ++ + +++ + +++ +++
Sbjct: 52 ATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQ 111
Query: 70 EIEESLKERKEKT 82
++EE+ K E
Sbjct: 112 KLEEAEKAADESE 124
Score = 29.2 bits (65), Expect = 2.1
Identities = 9/64 (14%), Positives = 30/64 (46%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
+ ++ I+ + + ++ E E E+ + EK+ + + +K K K ++ + ++
Sbjct: 220 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALN 279
Query: 70 EIEE 73
++
Sbjct: 280 DMTS 283
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH
UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 33.3 bits (75), Expect = 0.050
Identities = 9/63 (14%), Positives = 34/63 (53%)
Query: 3 KRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
++ EK++ +++E+++E++ ++ ++++ EEE+ + + ++ K ++ K
Sbjct: 34 EKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQLEDLREHFKNTEEGKAL 93
Query: 63 KEE 65
Sbjct: 94 VHH 96
Score = 27.9 bits (61), Expect = 3.4
Identities = 12/56 (21%), Positives = 25/56 (44%)
Query: 2 RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKK 57
K E + E + +++ +E+E+EE+E D E+ + K ++ K
Sbjct: 41 EKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQLEDLREHFKNTEEGKALVHH 96
>3k29_A Putative uncharacterized protein; YSCO, type III secretion
apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia
trachomatis}
Length = 169
Score = 33.5 bits (75), Expect = 0.052
Identities = 18/88 (20%), Positives = 40/88 (45%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
++K R EK + ++R E E+E+ + E E++ V+ +K ++ +++
Sbjct: 13 IKKDRVDRAEKVVKEKRRLLELEQEKLRERESERDKVKNHYMQKIRQLREQLDDGTTSDA 72
Query: 61 KKKEEQSVKEIEESLKERKEKTLTEDSQ 88
K + +K + L E +EK +
Sbjct: 73 ILKMKAYIKVVAIQLSEEEEKVNKQKEN 100
Score = 32.3 bits (72), Expect = 0.14
Identities = 14/74 (18%), Positives = 39/74 (52%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
K + + EEE++ N+Q+E +E + + + K++K+++K + K++ +
Sbjct: 78 AYIKVVAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEKTRLHKEEWMKEAL 137
Query: 70 EIEESLKERKEKTL 83
+ E +E+++ +
Sbjct: 138 KEEARQEEKEQDEM 151
Score = 26.5 bits (57), Expect = 9.1
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
+ + KR KEEEK +EE KE ++EE +++K++ + + + K+K+ E
Sbjct: 110 RAEVELTKRRKEEEKTRLHKEEWMKEALKEEARQEEKEQDEMGQLLHQLHKQKQRESG 167
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 34.2 bits (79), Expect = 0.056
Identities = 13/69 (18%), Positives = 27/69 (39%)
Query: 9 GEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSV 68
G KKK E E +E E ++ E+ ++ + K+ K + +
Sbjct: 68 GAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEA 127
Query: 69 KEIEESLKE 77
+++EE +
Sbjct: 128 QQLEEERDK 136
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 33.2 bits (75), Expect = 0.058
Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 10 EKKKRIEKRNKE-EEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSV 68
++ ++ K + + +E+ E K +++K K K+KKK +K +K E++
Sbjct: 70 KRSRKTVKAQRPITGASLDLIKERRSLKPEVRKANREEKLKANKEKKKAEKAARKAEKAK 129
Query: 69 KEIEESLKERKEKT 82
+S K K++
Sbjct: 130 SAGTQSSKFSKQQA 143
Score = 32.0 bits (72), Expect = 0.14
Identities = 12/57 (21%), Positives = 28/57 (49%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQ 66
++++ ++ ++ +EE + KEK+ E+ K +K K + K K++ K
Sbjct: 91 KERRSLKPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAF 147
Score = 31.6 bits (71), Expect = 0.19
Identities = 9/63 (14%), Positives = 25/63 (39%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
+R +K E++ K ++++ ++ K + + + K K++ K +K
Sbjct: 91 KERRSLKPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQKV 150
Query: 61 KKK 63
Sbjct: 151 AAT 153
Score = 31.2 bits (70), Expect = 0.25
Identities = 12/65 (18%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 18 RNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKE 77
+ + K E + +E++ ++ K KKK +K +K +K K + + S ++ + + ++
Sbjct: 91 KERRSLKPEVRKANREEK-LKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQK 149
Query: 78 RKEKT 82
+
Sbjct: 150 VAATS 154
Score = 31.2 bits (70), Expect = 0.29
Identities = 17/71 (23%), Positives = 32/71 (45%)
Query: 2 RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
+KR + ++ I + + KE + + ++ EEK K K+KKK +K +K +K
Sbjct: 69 KKRSRKTVKAQRPITGASLDLIKERRSLKPEVRKANREEKLKANKEKKKAEKAARKAEKA 128
Query: 62 KKEEQSVKEIE 72
K +
Sbjct: 129 KSAGTQSSKFS 139
Score = 30.1 bits (67), Expect = 0.62
Identities = 12/57 (21%), Positives = 25/57 (43%)
Query: 11 KKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
+ + E R E++ +EK+K + K +K K + K K++ K ++
Sbjct: 94 RSLKPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQKV 150
Score = 29.7 bits (66), Expect = 0.80
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 16 EKRNKEEEKEENEQEEKEKEDVEEEKNKK-KKKKKKKKKKKKKKKKKKKEEQSVKEIEES 74
E+R+ + E + +EEK K + E++K +K +K +K K + K K++ + +
Sbjct: 92 ERRSLKPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQKVA 151
Query: 75 LKER 78
R
Sbjct: 152 ATSR 155
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB:
3izs_e 3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 34.0 bits (77), Expect = 0.058
Identities = 7/41 (17%), Positives = 18/41 (43%)
Query: 40 EKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKE 80
E+ ++ +K K+K+ ++ KE E + + +
Sbjct: 24 EQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQ 64
Score = 32.9 bits (74), Expect = 0.11
Identities = 6/48 (12%), Positives = 20/48 (41%)
Query: 34 KEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
K +++ ++ ++ +K K+K+ E++ +E +
Sbjct: 15 KSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNI 62
Score = 32.9 bits (74), Expect = 0.12
Identities = 11/51 (21%), Positives = 21/51 (41%)
Query: 31 EKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
+K E V E+ +K K+K+ ++ ++E E +R K
Sbjct: 20 QKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAK 70
Score = 32.1 bits (72), Expect = 0.22
Identities = 12/74 (16%), Positives = 31/74 (41%)
Query: 24 KEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTL 83
K + +Q+ E+ E K K+K+ ++ +K+ E + + I ++ ++ K
Sbjct: 15 KSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAGS 74
Query: 84 TEDSQCDTMIPVFK 97
++ V +
Sbjct: 75 YYVEAQHKLVFVVR 88
Score = 29.4 bits (65), Expect = 1.5
Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 10/77 (12%)
Query: 12 KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
KK K ++ ++ + K K+K+ ++ +K+ E I
Sbjct: 14 KKS--KAQQKTAEQVAAERAARK--------AANKEKRAIILERNAAYQKEYETAERNII 63
Query: 72 EESLKERKEKTLTEDSQ 88
+ + + ++Q
Sbjct: 64 QAKRDAKAAGSYYVEAQ 80
Score = 27.1 bits (59), Expect = 8.0
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 37 VEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
E + KK K ++K ++ ++ +K K
Sbjct: 8 TPESQLKKSKAQQKTAEQVAAERAARKAANKEK 40
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle,
dimer, chaperone, STRE response; 3.23A {Thermus
thermophilus}
Length = 177
Score = 33.4 bits (77), Expect = 0.062
Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 19/85 (22%)
Query: 22 EEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK-----------KKEEQSVKE 70
EE+ EK+ E V +E +++ K +++ K K K +K + +E
Sbjct: 2 EERNHENTLEKDLEAVGQEAQALEERLKAAEEELKGLKDKYLRLLADFDNYRK--RMEEE 59
Query: 71 IEESLKERKEKTLTEDSQCDTMIPV 95
++ +E K L ++PV
Sbjct: 60 LKAREREGVLKALRA------LLPV 78
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC
domain, vesicle trafficking, membrane curvature,
endocytosis, exocytosis, F-BAR domain; 2.30A {Homo
sapiens}
Length = 276
Score = 33.9 bits (77), Expect = 0.064
Identities = 14/66 (21%), Positives = 28/66 (42%)
Query: 13 KRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIE 72
+++++ KE +K EQ + K+ EE + + + + +K K+ E E
Sbjct: 94 RKLQELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQE 153
Query: 73 ESLKER 78
KE
Sbjct: 154 RLKKEG 159
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 138
Score = 32.6 bits (74), Expect = 0.064
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
E K R+ + + E++ ++ KE+ KN+ KK + KK K KKK
Sbjct: 92 EPKYRLIRNGLATKVEKSRKQMKER------KNRAKKIRGVKKTKAGDAGKKK 138
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea} SCOP:
i.1.1.1
Length = 198
Score = 33.4 bits (76), Expect = 0.065
Identities = 7/51 (13%), Positives = 15/51 (29%)
Query: 33 EKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTL 83
+K ++ N K + + ++V E + KT
Sbjct: 46 KKLHTQKSFNFHDAVTPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTS 96
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 34.0 bits (79), Expect = 0.065
Identities = 12/79 (15%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 12 KKRIEKRNKEEEKEE-NEQEEKEKE---DVEEEKNKKKKKKKKKKKKKKKKKKKKKEE-- 65
+ I ++ + E + + +E ++E + ++ + K+ K ++K+
Sbjct: 15 HRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGK 74
Query: 66 ---QSVKEIEESLKERKEK 81
+ K +EE+L+E++ +
Sbjct: 75 ALGEEAKRLEEALREKEAR 93
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 34.0 bits (78), Expect = 0.066
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 28 EQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
Q KE + E + K ++ K K+K +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 32.0 bits (73), Expect = 0.28
Identities = 8/32 (25%), Positives = 20/32 (62%)
Query: 24 KEENEQEEKEKEDVEEEKNKKKKKKKKKKKKK 55
+EN++ + +E + K K+K +K++ +K+
Sbjct: 309 VKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 32.0 bits (73), Expect = 0.28
Identities = 5/35 (14%), Positives = 22/35 (62%)
Query: 31 EKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
+ ++ ++ + ++K ++ K K+K +K++ +++
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 31.3 bits (71), Expect = 0.42
Identities = 8/29 (27%), Positives = 20/29 (68%)
Query: 38 EEEKNKKKKKKKKKKKKKKKKKKKKKEEQ 66
E +K ++ ++K ++ K K+K +K++ E+
Sbjct: 311 ENQKRRETEEKMRRAKLAKEKAEKERLEK 339
Score = 30.9 bits (70), Expect = 0.63
Identities = 8/31 (25%), Positives = 23/31 (74%)
Query: 40 EKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
++N+K+++ ++K ++ K K+K ++E+ K+
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 29.7 bits (67), Expect = 1.3
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 20 KEEEKEENEQEEKEKEDVEEEKNKKKKKKKK 50
KE +K +E+ + + +EK +K++ +K+
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 29.7 bits (67), Expect = 1.4
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 20 KEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKK 54
+ KE ++ E E++ + K+K +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 29.3 bits (66), Expect = 2.1
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 12 KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKK 47
K +KR + EEK + KEK EK + +K+
Sbjct: 309 VKENQKRRETEEKMRRAKLAKEKA----EKERLEKQ 340
Score = 28.6 bits (64), Expect = 3.2
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 40 EKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
+ K+ +K+++ ++K ++ K KE+ KER EK
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAE--------KERLEK 339
>3izc_K 60S ribosomal protein RPL16 (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_K
3o58_P 3o5h_P 3u5e_O 3u5i_O
Length = 199
Score = 33.4 bits (76), Expect = 0.075
Identities = 9/39 (23%), Positives = 13/39 (33%)
Query: 28 EQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQ 66
+ E K K E KK+ KK + +Q
Sbjct: 155 KLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQ 193
Score = 29.1 bits (65), Expect = 1.5
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 32 KEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKE 77
K ++ V + + K+K + KK+ KK + + K+
Sbjct: 148 KYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQ 193
Score = 27.6 bits (61), Expect = 4.9
Identities = 10/47 (21%), Positives = 18/47 (38%)
Query: 35 EDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
EDV + K+K + KK+ KK + E + ++
Sbjct: 150 EDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQLAA 196
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange
factor, coiled-coil, complex (HSP24/HSP70); 2.80A
{Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Length = 197
Score = 33.1 bits (76), Expect = 0.077
Identities = 6/56 (10%), Positives = 25/56 (44%)
Query: 26 ENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
+++++ + EE + ++ + + + ++ ++ V +E L E + +
Sbjct: 2 SSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKVANLEAQLAEAQTR 57
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 34.1 bits (79), Expect = 0.079
Identities = 12/64 (18%), Positives = 36/64 (56%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
E ++++++ KE++ QE ++ + + + + +++ + KK K+K+ ++ E +V
Sbjct: 398 ELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVD 457
Query: 70 EIEE 73
+I
Sbjct: 458 DIAM 461
Score = 33.7 bits (78), Expect = 0.098
Identities = 15/95 (15%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 12 KKRIEKRNKEEEKEENEQE----EKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
K R+ +E EQ+ KEK+ + + +K + +++ +++ + ++
Sbjct: 384 KVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKS- 442
Query: 68 VKEIEESLKERKEKTLTEDSQCD-----TMIPVFK 97
+ + ++ +T D T +PV K
Sbjct: 443 ----WKEKQGQENSEVTVDDIAMVVSSWTGVPVSK 473
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription
regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo
sapiens}
Length = 214
Score = 33.2 bits (75), Expect = 0.080
Identities = 11/56 (19%), Positives = 28/56 (50%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
EK+ I+ ++E + NE + E++ +E + ++ KK++K ++ +
Sbjct: 156 EKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRKYGAEECLQHHH 211
Score = 29.7 bits (66), Expect = 1.2
Identities = 10/55 (18%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 17 KRNKEEEKEENEQE-EKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
K + EKE Q ++++ E +++ + +K ++ KK+ + E
Sbjct: 150 KNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRKYGAE 204
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 33.8 bits (78), Expect = 0.095
Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 4/85 (4%)
Query: 6 GGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
GA IE +E+ E + + + ++E + + ++++EE
Sbjct: 7 SGAPALSTNIESGKFDEKAAEAAAYQPKPKVEDDEDEDIDALIEDLESHDGHDAEEEEEE 66
Query: 66 QSVKE----IEESLKERKEKTLTED 86
+ E+ L+ LT +
Sbjct: 67 ATPGGGRVVPEDMLQTDTRVGLTSE 91
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning,
protein-DNA complex, heilx-turn- helix motif,
transcription factor; HET: BRU; 2.20A {Escherichia coli}
SCOP: a.4.14.1
Length = 178
Score = 32.5 bits (74), Expect = 0.11
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 4/74 (5%)
Query: 12 KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
KKR E+ + + E + + E ++K + + ++ E +
Sbjct: 105 KKRPEEVEAWLDDDTQEITRGTVKLLREFLDEKGRDPNTVDAFNGQTDAERDAEAGDGQD 164
Query: 72 EES----LKERKEK 81
E K+ KEK
Sbjct: 165 GEDGDQDGKDAKEK 178
Score = 32.1 bits (73), Expect = 0.14
Identities = 8/51 (15%), Positives = 20/51 (39%)
Query: 2 RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKK 52
+ R EK + + + + E++ + + + E + K K+K
Sbjct: 128 KLLREFLDEKGRDPNTVDAFNGQTDAERDAEAGDGQDGEDGDQDGKDAKEK 178
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; HET: SSA; 2.60A
{Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A*
2zr3_A
Length = 455
Score = 33.4 bits (77), Expect = 0.11
Identities = 11/77 (14%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 12 KKRIEKRNKEEEKEENEQ----EEKEKE---DVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
K + KR + E+ + ++ + + + ++ ++++ K + K++KK + +
Sbjct: 15 KNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDEL 74
Query: 65 EQSVKEIEESLKERKEK 81
+EI + + E + +
Sbjct: 75 LAKSREIVKRIGELENE 91
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 33.1 bits (75), Expect = 0.12
Identities = 13/94 (13%), Positives = 30/94 (31%), Gaps = 15/94 (15%)
Query: 3 KRRGGAGEKKKRIEKRNKEEEKEENEQEEKEK---------------EDVEEEKNKKKKK 47
+++ + +K I + + +EE EK + +E K
Sbjct: 187 EKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKKVHAA 246
Query: 48 KKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
+ K KK+ + + + ++RK
Sbjct: 247 IRADPTMAKSTKKEPATHKRYNLKKLTYEQRKAS 280
Score = 31.9 bits (72), Expect = 0.28
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 31 EKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQ---SVKEIEESLKERKEKTLTEDS 87
+K + + K KK+ K+ KK EQ S+ E +L ++
Sbjct: 241 KKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDDEE 300
Query: 88 QCD 90
+ D
Sbjct: 301 EDD 303
Score = 30.4 bits (68), Expect = 0.78
Identities = 8/57 (14%), Positives = 21/57 (36%)
Query: 24 KEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKE 80
+ + + K++ K KK +++K ++ S ++ +E E
Sbjct: 248 RADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDDEEEDDE 304
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence
factor, S active protein, toxin; 3.04A {Streptococcus
pyogenes serotype M1} PDB: 2xny_M
Length = 155
Score = 32.3 bits (72), Expect = 0.12
Identities = 18/81 (22%), Positives = 34/81 (41%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
+ K R+E + ++ EE EK E +K + K K+ ++ K+ +
Sbjct: 33 DLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYDLAKESTSWDRQ 92
Query: 70 EIEESLKERKEKTLTEDSQCD 90
+E+ L+E+KE Q
Sbjct: 93 RLEKELEEKKEALELAIDQAS 113
Score = 30.4 bits (67), Expect = 0.46
Identities = 14/85 (16%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 2 RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEE-KNKKKKKKKKKKKKKKKKKK 60
K R + + + EE ++ + E +++D+E + K ++ K+ +++
Sbjct: 34 LKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYDLAKESTSWDRQR 93
Query: 61 KKKEEQSVKEIEESLKERKEKTLTE 85
+KE + KE E ++ +
Sbjct: 94 LEKELEEKKEALELAIDQASRDYHR 118
Score = 28.9 bits (63), Expect = 1.8
Identities = 8/79 (10%), Positives = 34/79 (43%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
++ ++++ E + +E +Q+ ++ ++ +K+ ++KK+ + + +
Sbjct: 59 KQALEDQRKDLETKLKELQQDYDLAKESTSWDRQRLEKELEEKKEALELAIDQASRDYHR 118
Query: 70 EIEESLKERKEKTLTEDSQ 88
+ ++K E +
Sbjct: 119 ATALEKELEEKKKALELAI 137
Score = 28.5 bits (62), Expect = 2.1
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
+ + K E E ++ K E++E+ K+ + ++K + K K+ +++ K
Sbjct: 28 RHENKDLKARLENAMEVAGRDFKRAEELEK---AKQALEDQRKDLETKLKELQQDYDLAK 84
Query: 70 EIEESLKERKEKTLTEDSQ 88
E ++R EK L E +
Sbjct: 85 ESTSWDRQRLEKELEEKKE 103
Score = 27.7 bits (60), Expect = 4.1
Identities = 11/66 (16%), Positives = 27/66 (40%)
Query: 16 EKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESL 75
+ + + K+ +N + + K+ ++ +K K+ E K++E L
Sbjct: 14 DLAANNPAIQNIRLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKL 73
Query: 76 KERKEK 81
KE ++
Sbjct: 74 KELQQD 79
Score = 27.3 bits (59), Expect = 4.9
Identities = 11/88 (12%), Positives = 37/88 (42%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
R ++ K+ E+++++ E + KE + + + +++ +K+ ++KK
Sbjct: 43 EVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYDLAKESTSWDRQRLEKELEEKK 102
Query: 61 KKKEEQSVKEIEESLKERKEKTLTEDSQ 88
+ E + + + + E+ +
Sbjct: 103 EALELAIDQASRDYHRATALEKELEEKK 130
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 33.1 bits (75), Expect = 0.13
Identities = 9/72 (12%), Positives = 26/72 (36%)
Query: 14 RIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEE 73
+ + + E+ + + K +KK K++ + KK ++ + S +E
Sbjct: 225 GYLADDIDADSLEDIYTSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAA 284
Query: 74 SLKERKEKTLTE 85
+ + +
Sbjct: 285 RVAAKIAALAGQ 296
Score = 30.8 bits (69), Expect = 0.54
Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 12 KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE--QSVK 69
I+ + E+ + + + + K K++ + KK ++ K KEE V
Sbjct: 228 ADDIDADSLEDIYTSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVA 287
Query: 70 EIEESLKERK 79
+L ++
Sbjct: 288 AKIAALAGQQ 297
Score = 29.7 bits (66), Expect = 1.5
Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 10/90 (11%)
Query: 2 RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVE----EEKNKKKKKK------KKK 51
R G + E + +EE+ + +D++ E+ + K
Sbjct: 196 RSYIFGGHVSQYMEELADDDEERFSELFKGYLADDIDADSLEDIYTSAHEAIRADPAFKP 255
Query: 52 KKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
+KK K++ E + ++ + S +ER +
Sbjct: 256 TEKKFTKEQYAAESKKYRQTKLSKEERAAR 285
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 203
Score = 32.7 bits (74), Expect = 0.13
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 39 EEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKE 77
EEK K+K K +KKK+ + +K+ E+ K+I++ +
Sbjct: 157 EEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEV 195
Score = 31.5 bits (71), Expect = 0.28
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 30 EEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
EEK KE + KKK+ + +K+ +K +KK + V +
Sbjct: 157 EEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLK 197
Score = 28.8 bits (64), Expect = 2.1
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 40 EKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
++K+K+K K +KKK+ + +Q+ K +E+ + + E
Sbjct: 154 ATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEV 195
>1l4a_E Synaphin A; snare, snare complex, membrane fusion,
neurotransmission, endocytosis/exocytosis complex;
2.95A {Loligo pealei} SCOP: h.1.15.1
Length = 79
Score = 30.7 bits (68), Expect = 0.13
Identities = 19/78 (24%), Positives = 39/78 (50%)
Query: 3 KRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
K G E + E+ E+ E EE+ KE + + ++++ ++ + K KKK K
Sbjct: 2 KSASGEKEGNENAEEEAAAIEEARREAEERRKEKHRKMEEEREEMRQTIRDKYGLKKKVK 61
Query: 63 KEEQSVKEIEESLKERKE 80
+E ++ +++E RK+
Sbjct: 62 EEPEAEADLDEGRVGRKK 79
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 3iyv_J
Length = 70
Score = 30.5 bits (68), Expect = 0.14
Identities = 11/52 (21%), Positives = 28/52 (53%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
E+ +R+E + K+E E +EK ++++E ++ ++ +K K + +
Sbjct: 17 EQTERLEALDANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKANNRVADEA 68
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2;
I-BAR, protein binding; 2.25A {Mus musculus}
Length = 222
Score = 32.5 bits (73), Expect = 0.15
Identities = 14/76 (18%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 15 IEKRNKEEEKE-ENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSV----K 69
+EK K + + ++ + E E N +K + + ++K+ K ++ ++SV
Sbjct: 106 MEKNTKLDMQFIKDSCQHYEIEYRHRAANLEKCMSELWRMERKRDKNAREMKESVNRLHA 165
Query: 70 EIEESLKERKEKTLTE 85
+++ + E K E
Sbjct: 166 QMQAFVSESKRAAELE 181
Score = 27.5 bits (60), Expect = 6.0
Identities = 11/83 (13%), Positives = 32/83 (38%), Gaps = 7/83 (8%)
Query: 12 KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE-----EQ 66
+ I+ + E E + ++ + E ++K+ K ++ K+ + + +
Sbjct: 114 MQFIKDSCQHYEIEYRHRAANLEKCMSELWRMERKRDKNAREMKESVNRLHAQMQAFVSE 173
Query: 67 SVKEIEESLKERKEKTLTEDSQC 89
S + E L+E++ +
Sbjct: 174 SKRAAE--LEEKRRYRFLAEKHL 194
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 32.8 bits (74), Expect = 0.15
Identities = 0/117 (0%), Positives = 0/117 (0%), Gaps = 35/117 (29%)
Query: 2 RKRRGGAGEKKKRIEK--RNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKK--- 56
+RR + + R + + E E K+ + K +
Sbjct: 94 AERRILPKPSRTSRQVQKRPRSRTLTAVHDKILEDLVFPTEIVGKRVRYLVGGNKIQKVL 153
Query: 57 -----------------------KKKKKKKEE-----QSVKEIEESLKERKEKTLTE 85
K+ E
Sbjct: 154 LDSKDVQQIDYKLESFQAVYNKLTGKQIVFEIPSETH-- 208
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone
chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A
{Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A
3c9b_A 3q33_B* 3q35_B* 3dm7_A
Length = 264
Score = 32.8 bits (74), Expect = 0.15
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 21 EEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
+ E EE E D E++ + ++ KK+K
Sbjct: 222 DLEDEEGESGLSADGDSEDDDGSLGEVDLPLSDEEPSSKKRK 263
Score = 30.1 bits (67), Expect = 1.1
Identities = 7/45 (15%), Positives = 19/45 (42%)
Query: 16 EKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
+R+ E+E+ E+ + ++ + ++ KK+K
Sbjct: 219 AQRDLEDEEGESGLSADGDSEDDDGSLGEVDLPLSDEEPSSKKRK 263
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F
alternative rescue factor, ARFB, release factor, rescue
of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Length = 140
Score = 31.7 bits (72), Expect = 0.16
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 14 RIEKRNKEE-------EKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
R ++ N+E +E E+K + + K+++ K +K K + K
Sbjct: 78 RSQELNREAALARLVAMIKELTTEKKARRPTRPTRASKERRLASKAQKSSVKAMRGKVR 136
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus,
binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Length = 140
Score = 31.7 bits (71), Expect = 0.16
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 32 KEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEES 74
+K D N ++K+KKKKK K +K ++ E V E E+S
Sbjct: 95 TQKSDELASSNMEQKEKKKKKSSAAKGRKTEENETPVTESEDS 137
Score = 27.4 bits (60), Expect = 5.1
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 17 KRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
+R+ K ++ ++ E+K KKKKK K +K ++ + E
Sbjct: 85 RRSNSLLKYITQKSDELASSNMEQKEKKKKKSSAAKGRKTEENETPVTE 133
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_e
Length = 244
Score = 32.5 bits (73), Expect = 0.17
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 32 KEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKE 80
+ +E EK +K +K K + K + E+ E E KE +
Sbjct: 19 RREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQY-AGEYEAQDKELVQ 66
Score = 31.7 bits (71), Expect = 0.28
Identities = 12/74 (16%), Positives = 27/74 (36%)
Query: 24 KEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTL 83
K E+ ++ + K K + K + ++ + E KE+ + +E + K
Sbjct: 17 KRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMKGG 76
Query: 84 TEDSQCDTMIPVFK 97
S + V +
Sbjct: 77 FYVSPEAKPLFVVR 90
Score = 31.0 bits (69), Expect = 0.46
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 30 EEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
E K V E+ K+++++ +KK+K +K + +
Sbjct: 3 SEAAKVAVPEKVILKRRREEVWAAEKKQKVAAEKIKAAEN 42
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 32.4 bits (73), Expect = 0.17
Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 28 EQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK--KKEEQSVKEIEESLKERK 79
E +K+ E+ + K +++K + K++K + K ++ E E + K+
Sbjct: 7 ENVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIV 60
Score = 31.3 bits (70), Expect = 0.36
Identities = 11/53 (20%), Positives = 26/53 (49%)
Query: 29 QEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
++EK ++ E++ + K++K + K +K E E + ++RK +
Sbjct: 15 RDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKAR 67
Score = 30.9 bits (69), Expect = 0.54
Identities = 6/45 (13%), Positives = 23/45 (51%)
Query: 41 KNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTLTE 85
+++K +K K +++K + K+++ + + + ++ E +
Sbjct: 15 RDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKI 59
Score = 29.4 bits (65), Expect = 1.6
Identities = 8/74 (10%), Positives = 32/74 (43%)
Query: 24 KEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTL 83
K +++ ++ + + + + + K++K + K +K + E + K+I + ++ ++
Sbjct: 12 KLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKARKTGA 71
Query: 84 TEDSQCDTMIPVFK 97
+ +
Sbjct: 72 FYVPAEAKVAFAIR 85
Score = 28.6 bits (63), Expect = 2.8
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 37 VEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
V E KK + +K +K K +++K + +
Sbjct: 5 VPENVQKKLARDEKLRKAKAEQRKASSAQMKQR 37
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 32.7 bits (75), Expect = 0.18
Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
K +R + K + + + + + + ++ K ++KK
Sbjct: 200 IKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFL 259
Query: 70 EIEESLKERKEKTLTEDSQCDTMIPVFKK 98
+I++ KE EKT S D + ++++
Sbjct: 260 KIKKKRKELFEKTFDYVS--DHLDAIYRE 286
Score = 30.0 bits (68), Expect = 1.4
Identities = 9/69 (13%), Positives = 26/69 (37%)
Query: 12 KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
K + ++ E K K + + + ++ + + + ++ Q KE
Sbjct: 123 GKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEY 182
Query: 72 EESLKERKE 80
EE ++ ++
Sbjct: 183 EELKEKIEK 191
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_X 2go5_4 2j37_4
Length = 152
Score = 31.4 bits (71), Expect = 0.21
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 41 KNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
K KK K ++ K K K K
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKS 33
Score = 28.7 bits (64), Expect = 1.8
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 32 KEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKK 63
K + K ++ K K K K+K KK
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
Score = 27.1 bits (60), Expect = 6.4
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 48 KKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTLT 84
K KK K ++ K ++VK K +K +T
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKKIRTSV 40
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 32.5 bits (75), Expect = 0.22
Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 12 KKRIEKRNKEEEKEEN---EQEEKEKE---DVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
K+R+ R+KE + E +++ +E +E ++++ K K+ K K++ K + +
Sbjct: 15 KERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQ 74
Query: 66 QSVKEIEESLKERKEKTLTEDSQCDTM---IP 94
VKE++E + +E+ + + IP
Sbjct: 75 NRVKELKEEIDRLEEELRKVEEELKNTLLWIP 106
>2ww5_A LYTC autolysin, 1,4-beta-N-acetylmuramidase; hydrolase,
glycosidase, choline-binding protein; 1.61A
{Streptococcus pneumoniae} PDB: 2wwd_A* 2wwc_A
Length = 468
Score = 32.4 bits (73), Expect = 0.22
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 4/69 (5%)
Query: 186 GWWRCFANNYLQWAAVGTWILLNTQGWWRCF-ANNYLQWAAVGTWILLNTQGFISQGIGL 244
G + + A WI N W ++ L + G+++Q +
Sbjct: 44 GDYYVKDDGS---KAQSEWIFDNYYKAWFYINSDGRYSQNEWHGNYYLKSGGYMAQNEWI 100
Query: 245 NNKEYLIWY 253
+ Y W+
Sbjct: 101 YDSNYKSWF 109
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_K
Length = 206
Score = 31.9 bits (72), Expect = 0.23
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 39 EEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKE 77
EEK K+K K ++K+ K + K E+ + +++ L+
Sbjct: 162 EEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEI 200
Score = 30.7 bits (69), Expect = 0.49
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 30 EEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSV 68
EEK KE + +++K+ K + K +K ++K + +
Sbjct: 162 EEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEI 200
Score = 28.8 bits (64), Expect = 2.3
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 40 EKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
+ ++K+K+K K ++K+ K ++ K EE L + E
Sbjct: 159 RELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEI 200
Score = 26.9 bits (59), Expect = 9.9
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 35 EDVEEEKNKKKKKKKKKKKKKKKKKKK--KKEEQSVKEIEESLKE 77
++EE++ +K K ++K+ K + K K E+ + E L
Sbjct: 159 RELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAP 203
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_B
Length = 255
Score = 32.0 bits (72), Expect = 0.23
Identities = 17/59 (28%), Positives = 22/59 (37%)
Query: 41 KNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTLTEDSQCDTMIPVFKKG 99
KNK+ K KK +KK+ +KE +K KTL S KG
Sbjct: 5 KNKRLSKGKKGQKKRVVDPFTRKEWFDIKAPSTFENRNVGKTLVNKSTGLKSASDALKG 63
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Length = 123
Score = 30.8 bits (69), Expect = 0.26
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 41 KNKKKKKKKKKKKKKKKKKKKKKEEQS 67
K KK K +K K KKKK+K ++S
Sbjct: 8 KAAKKAGKAQKNITKTDKKKKRKRKES 34
Score = 30.1 bits (67), Expect = 0.48
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 38 EEEKNKKKKKKKKKKKKKKKKKKKKK 63
+ K KK K +K K KKKK
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKK 28
Score = 29.7 bits (66), Expect = 0.61
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 40 EKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
K K KK K +K K KK+++ KE
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRKE 33
Score = 27.7 bits (61), Expect = 3.1
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 33 EKEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
K + K K +K K KKKK+K+K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 27.4 bits (60), Expect = 4.3
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 43 KKKKKKKKKKKKKKKKKKKKKEEQSVKEIEES 74
K K KK K +K K +++ ++ +ES
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRKES 34
Score = 27.0 bits (59), Expect = 4.7
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 32 KEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
+ +K K +K K KKKK+K+K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP,
pseudouridine synthase, guide RNA, isomerase
biosynthetic protein-RNA complex; HET: ATP; 2.30A
{Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Length = 104
Score = 30.4 bits (68), Expect = 0.27
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 37 VEEEKNKKKKKKKKKKKKKKKKKKKK 62
V+E K K+ KK K+K+ KKKK+ +
Sbjct: 79 VDERKRKESPKKNKEKRMKKKKRLNR 104
Score = 29.2 bits (65), Expect = 0.64
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 39 EEKNKKKKKKKKKKKKKKKKKKKKK 63
+E+ +K+ KK K+K+ KKKK+ +
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLNR 104
Score = 26.9 bits (59), Expect = 4.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 43 KKKKKKKKKKKKKKKKKKKKKE 64
++K+K+ KK K+K+ KKKK
Sbjct: 80 DERKRKESPKKNKEKRMKKKKR 101
Score = 26.5 bits (58), Expect = 7.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 36 DVEEEKNKKKKKKKKKKKKKKKKKK 60
D + K KK K+K+ KKKK+ +
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLNR 104
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 31.6 bits (72), Expect = 0.27
Identities = 7/59 (11%), Positives = 19/59 (32%)
Query: 24 KEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKT 82
+ E+ E E + + + ++ + + EE + E++ E
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDN 233
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 32.2 bits (72), Expect = 0.28
Identities = 15/142 (10%), Positives = 41/142 (28%), Gaps = 6/142 (4%)
Query: 8 AGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
A E + EEK E V E + + K K K+ + K + + +E
Sbjct: 75 ASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESK 134
Query: 68 VKEIEESLKERKEKTLTED-----SQCDTMIPVFKKGVLYKGIYCPSLTNSF-REPSLEM 121
++ + + ++ + +++ + ++ +
Sbjct: 135 PAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASR 194
Query: 122 SYQRYSHRQRQKSLIIVNLVDM 143
+ + K + L +
Sbjct: 195 RTGHLVNEKASKEAKVQALSNT 216
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 145
Score = 31.1 bits (70), Expect = 0.28
Identities = 10/38 (26%), Positives = 28/38 (73%)
Query: 36 DVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEE 73
++ +K++KK ++K K ++ K+K K +E+++++++E
Sbjct: 108 RLKLDKDRKKILERKAKSRQVGKEKGKYKEETIEKMQE 145
Score = 26.5 bits (58), Expect = 9.7
Identities = 8/32 (25%), Positives = 20/32 (62%)
Query: 34 KEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
+ +++++ K ++K K ++ K+K K K+E
Sbjct: 108 RLKLDKDRKKILERKAKSRQVGKEKGKYKEET 139
>2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL ATP11; half
barrel, chaperone; HET: P6G; 1.40A {Candida glabrata
cbs 138}
Length = 299
Score = 32.0 bits (72), Expect = 0.28
Identities = 14/81 (17%), Positives = 34/81 (41%)
Query: 19 NKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKER 78
++ +EK + + + E +EE K + + ++KKK+ K ++ EQ + +
Sbjct: 15 DRYKEKLLQKAKAEGVESIEELKKRLADQIEEKKKELNKIDPLRELEQHLNAGSRIHTNK 74
Query: 79 KEKTLTEDSQCDTMIPVFKKG 99
+ KT ++ +
Sbjct: 75 EHKTTKMSNKSNEKSGNVLPK 95
Score = 28.9 bits (64), Expect = 2.6
Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 13/87 (14%)
Query: 12 KKRIEKRNKEE-------------EKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKK 58
K+++ ++ K E ++ E +++E K D E + + K+ K
Sbjct: 18 KEKLLQKAKAEGVESIEELKKRLADQIEEKKKELNKIDPLRELEQHLNAGSRIHTNKEHK 77
Query: 59 KKKKKEEQSVKEIEESLKERKEKTLTE 85
K + + K K++ KTL +
Sbjct: 78 TTKMSNKSNEKSGNVLPKDKPYKTLDD 104
>3qap_A Sensory rhodopsin-2; phototaxis, nphtrii, membrane, transport
protein; HET: RET BOG LFA L2P; 1.90A {Natronomonas
pharaonis} PDB: 1gue_A* 1gu8_A* 1h68_A* 3qdc_A* 2f93_A*
2f95_A* 2ksy_A* 1h2s_A* 1jgj_A*
Length = 239
Score = 31.6 bits (71), Expect = 0.29
Identities = 12/118 (10%), Positives = 29/118 (24%), Gaps = 21/118 (17%)
Query: 147 AVLTVAWISYNEVELSQIDSTKLTWTVYTMMSNLAMCLLGWWRCFANNYLQWAAVGTWIL 206
+ +A ++Y M + + FA Y+ W T L
Sbjct: 42 GISGIAAVAY-----------------VVMALGVGWVPVAERTVFAPRYIDWIL--TTPL 82
Query: 207 LNTQGWWRCFANNYLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTYAM 264
+ ++ + ++ GF + + + V +
Sbjct: 83 IVYFLGLLAGLDSREFGIVITLNTVVMLAGFAGAMVPGIE--RYALFGMGAVAFLGLV 138
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A
{Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B*
1ux4_A
Length = 411
Score = 32.2 bits (73), Expect = 0.30
Identities = 10/50 (20%), Positives = 21/50 (42%)
Query: 12 KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
I K E+ ++ E+ D+E+ ++ K K+K+ +K
Sbjct: 21 DNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLASKRKEDLQKIT 70
Score = 31.8 bits (72), Expect = 0.37
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 23 EKEENEQEEKEKEDVEE-EKNKKKKKKKKKKKKKKKKKKKKK 63
+ E+ + EK + + EK ++ K K+K+ +K
Sbjct: 29 KAEKFADDLYEKGVLADLEKAFAAREIKSLASKRKEDLQKIT 70
Score = 30.6 bits (69), Expect = 0.75
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 21 EEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
+ EK ++ EK E+ ++ K K+K+ +K
Sbjct: 29 KAEKFADDLYEKGVLADLEKAFAAREIKSLASKRKEDLQKIT 70
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 32.1 bits (73), Expect = 0.31
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
Query: 32 KEKEDVEE--EKNKKKKK-------KKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKT 82
K+ D+E N + + KK KK K+ K +++E + + K T
Sbjct: 7 KDVADIESILALNPRTQSHAALHSTLAKKLDKKHWKRNPDKNCFHCEKLENNFDDIKHTT 66
Query: 83 LTED 86
L E
Sbjct: 67 LGER 70
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D
3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D
3azj_D 3azk_D 3azl_D 3azm_D ...
Length = 126
Score = 30.5 bits (68), Expect = 0.33
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 31 EKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
E K +K KK K +KK KK+KK +KE
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKE 36
Score = 30.5 bits (68), Expect = 0.34
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 32 KEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
+ + K KK K +KK KK+KK ++E
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKE 36
Score = 30.1 bits (67), Expect = 0.43
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 33 EKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
E K KK K +KK KK+KK ++S
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKES 37
Score = 29.8 bits (66), Expect = 0.67
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 38 EEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
+ KK KK K +KK KK ++S KE
Sbjct: 4 PAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKE 36
Score = 29.0 bits (64), Expect = 1.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 30 EEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
E + ++ +KK K +KK KK+KK +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 27.4 bits (60), Expect = 3.5
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 40 EKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEES 74
E K KK KK K +KK +++ K +ES
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKES 37
Score = 26.3 bits (57), Expect = 9.2
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 47 KKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKE 80
+ K KK KK + K ++ K RKE
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKE 36
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding
protein; NMR {Homo sapiens} SCOP: a.21.1.1
Length = 99
Score = 30.1 bits (68), Expect = 0.35
Identities = 8/43 (18%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 21 EEEKEENEQE-EKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
E++K + Q+ ++EK++ E + ++ + KK +
Sbjct: 54 EKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKKLEHHH 96
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 31.9 bits (72), Expect = 0.36
Identities = 7/73 (9%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 20 KEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERK 79
++E++ E + + + E+ + ++ + + + +K+ + +++
Sbjct: 103 EDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQ---FDILNKAVTSYN 159
Query: 80 EKTLTEDSQCDTM 92
+ ED Q +
Sbjct: 160 KILTEEDLQMRRL 172
Score = 31.9 bits (72), Expect = 0.40
Identities = 15/82 (18%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 16 EKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKK-----------KKKKKKE 64
++ K ++ +EK +++EE N + + + +K+ K +E
Sbjct: 106 QRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEE 165
Query: 65 EQSVKEIEESL-KERKEKTLTE 85
+ ++ + +L KE E+T E
Sbjct: 166 DLQMRRLATALQKEIGERTHAE 187
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Length = 108
Score = 30.0 bits (67), Expect = 0.36
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 32 KEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSV 68
K+K K K K+KKKK K K+K+K SV
Sbjct: 5 KDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNSV 41
Score = 28.8 bits (64), Expect = 1.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 34 KEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
K+D + K K K+KKKK K K++E
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKE 35
Score = 28.4 bits (63), Expect = 1.3
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 43 KKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
K K K+KKKK + KE
Sbjct: 8 APPPSSKPAKSGGGKQKKKKWSKGKQKE 35
Score = 28.0 bits (62), Expect = 1.7
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 29 QEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
+++K + K+KKKK K K+K+K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 28.0 bits (62), Expect = 1.8
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 32 KEKEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
K+ + K K+KKKK K K+K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQK 34
Score = 26.1 bits (57), Expect = 9.3
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 28 EQEEKEKEDVEEEKNKKKKKKKKKKKKKKKK 58
++ + K+KKKK K K+K+K
Sbjct: 6 DKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
>4a18_L RPL34; ribosome, eukaryotic initiation factor 6, EIF6, transla
large ribosomal subunit, rRNA; 3.52A {Tetrahymena
thermophila} PDB: 4a19_L 4a1b_L 4a1d_L 4adx_4
Length = 123
Score = 30.4 bits (68), Expect = 0.37
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 37 VEEEKNKKKKKKKKKKKKKKKKKKKKK 63
EE K K+K K K KKKK+ +KK
Sbjct: 97 TEEVKIVKRKMISKPKTDKKKKRSQKK 123
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 31.8 bits (72), Expect = 0.38
Identities = 8/74 (10%), Positives = 19/74 (25%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
+ + + + E K+ K + +E+
Sbjct: 207 MSDEYNNLDLLRKYLFDKSNFSRYFTGRVLEAVLKRTKAYLDILTNGRFDIDFDDEKGGF 266
Query: 70 EIEESLKERKEKTL 83
I++ ER + L
Sbjct: 267 IIKDWGIERPARGL 280
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 31.5 bits (72), Expect = 0.41
Identities = 12/85 (14%), Positives = 28/85 (32%), Gaps = 15/85 (17%)
Query: 12 KKRIEKRNKEEEK----------EENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
+ ++ R E +E Q ++ +EEEK + + + + +
Sbjct: 54 ARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQ 113
Query: 62 KKEEQS-----VKEIEESLKERKEK 81
+ + +EI + L K
Sbjct: 114 QDPQYQSLRARGREIRKQLTLLYPK 138
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 31.4 bits (72), Expect = 0.43
Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 10/74 (13%)
Query: 10 EKKKRIEKRNKEE------EKEENEQEEK----EKEDVEEEKNKKKKKKKKKKKKKKKKK 59
+ + ++ RN+ + K+ E +K +K +E + K + K + K
Sbjct: 528 KFDELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAK 587
Query: 60 KKKKEEQSVKEIEE 73
++ + S K +E
Sbjct: 588 MQELAQVSQKLMEI 601
Score = 31.4 bits (72), Expect = 0.50
Identities = 18/97 (18%), Positives = 44/97 (45%), Gaps = 15/97 (15%)
Query: 5 RGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNK------KKKKKKKKKKKKKKK 58
+ +G + I+K ++ E N + +++ +++ + +N+ +K+ ++ K
Sbjct: 502 KASSGLNEDEIQKMVRDAEA--NAEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPA 559
Query: 59 KKKKKEEQSVKEIEESLK-------ERKEKTLTEDSQ 88
K E ++ +E +LK E K + L + SQ
Sbjct: 560 DDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQ 596
>3tbi_B DNA-directed RNA polymerase subunit beta; transcription accessory
protein, transcription; 3.00A {Escherichia coli}
Length = 228
Score = 31.1 bits (71), Expect = 0.46
Identities = 9/64 (14%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 12 KKRIEK--RNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
+ +EK R E E+ + +Q +K+ + + + + + +K ++
Sbjct: 107 RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRD 166
Query: 70 EIEE 73
E
Sbjct: 167 RWLE 170
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 31.6 bits (72), Expect = 0.47
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 34 KEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERK 79
+E + K +++ KK+KK+ + KKK +E L+ +
Sbjct: 465 QELIPFVKPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNME 510
Score = 30.8 bits (70), Expect = 0.78
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 9 GEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSV 68
GEK K+ K +++ E + + K + KK + + K + +
Sbjct: 65 GEKMKK--KEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAE-R 121
Query: 69 KEIEESLKE 77
++E E
Sbjct: 122 IKLEAERFE 130
Score = 28.1 bits (63), Expect = 5.4
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 6/93 (6%)
Query: 2 RKRRGGAGEK-KKRIEKRNKEEEKEEN--EQEEKEKE---DVEEEKNKKKKKKKKKKKKK 55
R +GG ++ EKR K+ + + + + + + K K +K
Sbjct: 9 RVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKM 68
Query: 56 KKKKKKKKEEQSVKEIEESLKERKEKTLTEDSQ 88
KKK+ +E + + +
Sbjct: 69 KKKEPVGDDESVPENVLSFDDLTADALANLKVS 101
>3u5c_G RP9, S10, YS4, 40S ribosomal protein S6-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3j16_C 3u5g_G
Length = 236
Score = 30.9 bits (69), Expect = 0.49
Identities = 9/70 (12%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 12 KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
+ + +R + ++ + K + V ++ ++K+ ++ K + + +++ + + +
Sbjct: 154 RDFVIRREVTKGEKTYTKAPKIQRLVTPQR-LQRKRHQRALKVRNAQAQREAAAEYAQLL 212
Query: 72 EESLKERKEK 81
+ L ERK +
Sbjct: 213 AKRLSERKAE 222
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A
{Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q
3u5g_Z
Length = 108
Score = 29.6 bits (66), Expect = 0.50
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 34 KEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
K+ + + KK KKK KK K+
Sbjct: 4 KQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 29.2 bits (65), Expect = 0.67
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 41 KNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
+ K K KK KKK ++S+K+
Sbjct: 5 QQLSKAAKAAAALAGGKKSKKKWSKKSMKD 34
Score = 28.8 bits (64), Expect = 1.0
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 32 KEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSV 68
K++ + KK KKK KK K + + +V
Sbjct: 4 KQQLSKAAKAAAALAGGKKSKKKWSKKSMKDRAQHAV 40
Score = 26.9 bits (59), Expect = 4.0
Identities = 12/50 (24%), Positives = 20/50 (40%)
Query: 32 KEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
+++ + K KK KKK KK K Q +++ +R K
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDRAQHAVILDQEKYDRILK 52
Score = 26.5 bits (58), Expect = 5.5
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 29 QEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
+++ K KK KKK KK K +
Sbjct: 4 KQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 26.1 bits (57), Expect = 9.0
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 28 EQEEKEKEDVEEEKNKKKKKKKKKKKKKKKK 58
+Q K + KK KKK KK K +
Sbjct: 5 QQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 26.1 bits (57), Expect = 9.6
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 31 EKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
++ + + KK KKK KK K +
Sbjct: 5 QQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 29.3 bits (66), Expect = 0.51
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 21 EEEKEE-NEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKK 59
EEEK + E+ K+ E + + +++ + K
Sbjct: 51 EEEKLKYEEKATKDLERYNSQMKRAIEQESQMSLKDSGPS 90
Score = 25.9 bits (57), Expect = 8.1
Identities = 7/35 (20%), Positives = 19/35 (54%)
Query: 30 EEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
EEK K + + K+ ++ + K+ +++ + K+
Sbjct: 52 EEKLKYEEKATKDLERYNSQMKRAIEQESQMSLKD 86
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 30.7 bits (70), Expect = 0.53
Identities = 19/96 (19%), Positives = 43/96 (44%), Gaps = 15/96 (15%)
Query: 6 GGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNK------KKKKKKKKKKKKKKKK 59
+G + I+K ++ E N + +++ E++ + +N+ +K+ ++ K
Sbjct: 115 ASSGLNEDEIQKMVRD--AEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPAD 172
Query: 60 KKKKEEQSVKEIEESLK-------ERKEKTLTEDSQ 88
K E ++ +E +LK E K + L + SQ
Sbjct: 173 DKTAIESALTALETALKGEDKAAIEAKMQELAQVSQ 208
Score = 29.5 bits (67), Expect = 1.4
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 13/75 (17%)
Query: 8 AGEKKKR---IEKRNKEE------EKEENEQEEK----EKEDVEEEKNKKKKKKKKKKKK 54
A +K ++ RN+ + K+ E +K +K +E + K + K
Sbjct: 135 AEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKA 194
Query: 55 KKKKKKKKKEEQSVK 69
+ K ++ + S K
Sbjct: 195 AIEAKMQELAQVSQK 209
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION
channel mechanosensitive, membrane protein; 3.50A
{Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Length = 174
Score = 30.5 bits (68), Expect = 0.53
Identities = 5/38 (13%), Positives = 14/38 (36%)
Query: 45 KKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKT 82
+KK + ++ + + EI + L + +
Sbjct: 114 VLPYNTLRKKGEVEQPGDTQVVLLTEIRDLLAQTNGDS 151
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga
maritima} PDB: 2gaj_A*
Length = 633
Score = 31.4 bits (72), Expect = 0.54
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 36 DVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
+ + + K+KK + K+ + +E V+E + +K
Sbjct: 197 NFDGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKV--SVKKFA 240
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining,
protein/nucleic acid complex, alpha/beta domain, beta
barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2
c.62.1.4 PDB: 1jeq_B*
Length = 565
Score = 31.4 bits (70), Expect = 0.54
Identities = 5/49 (10%), Positives = 17/49 (34%)
Query: 21 EEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
E + + ++ + KKK + ++ + ++ + K
Sbjct: 517 NPPAEVTTKSQIPLSKIKTLFPLIEAKKKDQVTAQEIFQDNHEDGPTAK 565
Score = 31.0 bits (69), Expect = 0.68
Identities = 8/49 (16%), Positives = 16/49 (32%)
Query: 28 EQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLK 76
+ + +K K + KKK + ++ Q E + K
Sbjct: 517 NPPAEVTTKSQIPLSKIKTLFPLIEAKKKDQVTAQEIFQDNHEDGPTAK 565
Score = 28.3 bits (62), Expect = 4.9
Identities = 9/65 (13%), Positives = 17/65 (26%), Gaps = 5/65 (7%)
Query: 21 EEEKEENEQEEKEK-----EDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESL 75
E Q+ +V + K K + KKK + Q + +
Sbjct: 501 PREPLPPIQQHIWNMLNPPAEVTTKSQIPLSKIKTLFPLIEAKKKDQVTAQEIFQDNHED 560
Query: 76 KERKE 80
+
Sbjct: 561 GPTAK 565
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.70A
{Homo sapiens}
Length = 350
Score = 31.0 bits (69), Expect = 0.55
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKK-KKKKKKKKKKKKEEQSV 68
EK K +K ++ +E KE ED + K KK K+ + KK KEE+
Sbjct: 117 EKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLA 176
Query: 69 KEIEESLKERKEKT 82
E + K
Sbjct: 177 ISREANSKADPSLN 190
Score = 29.9 bits (66), Expect = 1.3
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 12 KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
KK KEE+ + + + + + KK + K +K K+ K K+K E+S+KE+
Sbjct: 163 KKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKEL 222
Query: 72 EESLKE 77
++ +
Sbjct: 223 DQGTPQ 228
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_4
Length = 265
Score = 30.9 bits (69), Expect = 0.57
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 41 KNKK--KKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTLTEDSQCDTMIPVFKK 98
KN KK KK+ +KE + + KTL S + + K
Sbjct: 5 KNPGLKAGGGKKGAKKRTIDPLSRKEWYDFRAPIPFSSKSFGKTLVTKSSGNRIASEEIK 64
Query: 99 G 99
G
Sbjct: 65 G 65
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 31.4 bits (71), Expect = 0.57
Identities = 12/91 (13%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 1 MRKRRGGAGEKKKRIEK-----RNKEEEKEENEQEEKEKEDVEEEKNKK-----KKKKKK 50
+ ++R E++ + R+ E + ++ + +K + KN++ K+ +
Sbjct: 1908 INEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQD 1967
Query: 51 KKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
++ + K+K ++ + + + + +K K
Sbjct: 1968 QQAAEIKQKDARELQVQLDVRNKEIAVQKVK 1998
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 30.9 bits (69), Expect = 0.60
Identities = 20/166 (12%), Positives = 55/166 (33%), Gaps = 9/166 (5%)
Query: 5 RGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
R +++ I +++ E+ E ++ + + + + ++ KK
Sbjct: 56 RDLREQERGIIPNQSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGLRRGAKKTT 115
Query: 65 EQSVKEIEESLKERKEKT--LTEDSQCDTMIPVFKKGVLYKGIYCPSLTNSFREPSLEMS 122
++S +++ ++ + + PV G + LT P
Sbjct: 116 QRSREDLSALTRQGRYPPYERVVLREASFKRPVVILGPVADIAMQK-LTAEM--PDQFEI 172
Query: 123 YQRYSHRQRQKSLIIVNLVDMVLK----AVLTVAWISYNEVELSQI 164
+ S +I ++ V ++ + A+L V + + Q
Sbjct: 173 AETVSRTDSPSKIIKLDTVRVIAEKDKHALLDVTPSAIERLNYVQY 218
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_I 4a1c_I 4a1e_I
Length = 198
Score = 30.7 bits (69), Expect = 0.60
Identities = 8/46 (17%), Positives = 23/46 (50%)
Query: 32 KEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKE 77
++ +E+ + K++ + K KK K+ +K+E + ++ +
Sbjct: 147 GKQTLIEKLEEKRRARAKTYHDKKVKQADARKKELAAPALKAIKDK 192
Score = 30.3 bits (68), Expect = 0.79
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 30 EEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQ 66
EEK + + +KK K+ +KK+ K +++
Sbjct: 156 EEKRRARAKTYHDKKVKQADARKKELAAPALKAIKDK 192
Score = 27.2 bits (60), Expect = 7.3
Identities = 7/47 (14%), Positives = 25/47 (53%)
Query: 35 EDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
+ + E+ +K++ + K KK K+ ++++ +++K++ +
Sbjct: 149 QTLIEKLEEKRRARAKTYHDKKVKQADARKKELAAPALKAIKDKLAQ 195
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 30.3 bits (68), Expect = 0.61
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 32 KEKEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
EKE+ + +KK + +++ + +K+
Sbjct: 151 TEKEEAVAKAAEKKVVRLTSRQRGRIAAQKR 181
Score = 29.5 bits (66), Expect = 1.3
Identities = 5/30 (16%), Positives = 14/30 (46%)
Query: 35 EDVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
+ EE K +KK + +++ + ++
Sbjct: 151 TEKEEAVAKAAEKKVVRLTSRQRGRIAAQK 180
Score = 28.8 bits (64), Expect = 1.8
Identities = 5/32 (15%), Positives = 16/32 (50%)
Query: 38 EEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
E+E+ K +KK + +++ + ++ +
Sbjct: 152 EKEEAVAKAAEKKVVRLTSRQRGRIAAQKRIA 183
Score = 28.8 bits (64), Expect = 2.2
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 37 VEEEKNKKKKKKKKKKKKKKKKKKKKKEEQ 66
V E++ K +KK + +++ + Q
Sbjct: 150 VTEKEEAVAKAAEKKVVRLTSRQRGRIAAQ 179
Score = 28.4 bits (63), Expect = 2.6
Identities = 3/31 (9%), Positives = 14/31 (45%)
Query: 25 EENEQEEKEKEDVEEEKNKKKKKKKKKKKKK 55
E E+ + + + + +++ + +K+
Sbjct: 151 TEKEEAVAKAAEKKVVRLTSRQRGRIAAQKR 181
Score = 28.4 bits (63), Expect = 2.7
Identities = 5/31 (16%), Positives = 15/31 (48%)
Query: 30 EEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
EKE+ + + K + +++ + +K+
Sbjct: 151 TEKEEAVAKAAEKKVVRLTSRQRGRIAAQKR 181
Score = 28.0 bits (62), Expect = 3.6
Identities = 5/30 (16%), Positives = 16/30 (53%)
Query: 28 EQEEKEKEDVEEEKNKKKKKKKKKKKKKKK 57
E+EE + E++ + +++ + +K+
Sbjct: 152 EKEEAVAKAAEKKVVRLTSRQRGRIAAQKR 181
Score = 27.6 bits (61), Expect = 5.4
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 29 QEEKEKEDVEEEKNKKKKKKKKKKKKKKKKK 59
E++E EK + +++ + +K+
Sbjct: 151 TEKEEAVAKAAEKKVVRLTSRQRGRIAAQKR 181
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A
{Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 29.9 bits (67), Expect = 0.62
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEK------EKEDVEEEKNKKKKKKKKKKKKKKKKKKKKK 63
E+ R+++ ++ E E EEK EK D++ + ++ +++ + K K
Sbjct: 20 EEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKI 79
Query: 64 E-EQSVKEIEESLKERKEK 81
+ E VKE+ + L++ +E
Sbjct: 80 QLEAKVKEMNKRLEDEEEM 98
Score = 26.4 bits (58), Expect = 9.4
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 8 AGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
A E+ ++ K + E + E ++ ++ EEE N + KK+K + + + K+ ++
Sbjct: 67 AEERCDQLIKNKIQLEAKVKEMNKRLED--EEEMNAELTAKKRKLEDECSELKRDIDD 122
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A
{Pyrococcus horikoshii} PDB: 3gqx_B
Length = 169
Score = 29.9 bits (67), Expect = 0.71
Identities = 10/37 (27%), Positives = 23/37 (62%), Gaps = 6/37 (16%)
Query: 31 EKEKEDVE------EEKNKKKKKKKKKKKKKKKKKKK 61
E+ K+++E +EK + K++K+++K +K K+
Sbjct: 133 EELKKELEARIKEIKEKYPRPPKRRKEERKGRKPWKE 169
Score = 28.0 bits (62), Expect = 3.9
Identities = 7/33 (21%), Positives = 22/33 (66%)
Query: 28 EQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
++ E ++++E+ + K++K+++K +K K+
Sbjct: 137 KELEARIKEIKEKYPRPPKRRKEERKGRKPWKE 169
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea} SCOP:
i.1.1.1
Length = 140
Score = 29.6 bits (67), Expect = 0.72
Identities = 4/28 (14%), Positives = 10/28 (35%)
Query: 41 KNKKKKKKKKKKKKKKKKKKKKKEEQSV 68
K ++ + +K +K + V
Sbjct: 4 PIPKIGSRRNGRISSRKSASARKIPKGV 31
Score = 29.6 bits (67), Expect = 0.88
Identities = 3/27 (11%), Positives = 9/27 (33%)
Query: 41 KNKKKKKKKKKKKKKKKKKKKKKEEQS 67
K K ++ + +K ++
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Length = 151
Score = 29.8 bits (67), Expect = 0.76
Identities = 4/34 (11%), Positives = 8/34 (23%)
Query: 41 KNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEES 74
K +K+ + V I +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENVFGVCHIMAT 36
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA
binding, signal recognition particle (SRP), translation
regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1
PDB: 1e8o_A* 1e8s_A 1ry1_C*
Length = 232
Score = 30.4 bits (68), Expect = 0.78
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 43 KKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
KK+ KK K KK K + ++K +
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLISEEDD 141
Score = 28.0 bits (62), Expect = 4.1
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 41 KNKKKKKKKKKKKKKKKKKKKKKEEQ 66
K + KK K KK K + ++K E+
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLISEE 139
Score = 27.3 bits (60), Expect = 6.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 46 KKKKKKKKKKKKKKKKKKEEQSVKEIEES 74
KK+ KK K KK K + E++ + E ++S
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLISEEDDS 142
Score = 26.9 bits (59), Expect = 9.6
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 39 EEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
++++KK K KK K + ++K +E+ S
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLISEEDDS 142
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A
{Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Length = 143
Score = 29.5 bits (66), Expect = 0.79
Identities = 9/64 (14%), Positives = 23/64 (35%)
Query: 18 RNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKE 77
+ ++ + E E + E + + + K KK + K + K++ +
Sbjct: 16 QQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQT 75
Query: 78 RKEK 81
+K
Sbjct: 76 FAQK 79
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.79
Identities = 48/317 (15%), Positives = 89/317 (28%), Gaps = 97/317 (30%)
Query: 63 KEEQSVKEIEESLKERKEKTLTEDSQCDTMI--PVFKKGVLYK-GIYCPSLTNS---FRE 116
+ K++++ K L+ + D +I G L F E
Sbjct: 30 VDNFDCKDVQDMPKS----ILS-KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 117 PSLEMSY----QRYSHRQRQKSLIIVNLVDMVLKAVLTVAWISYNEVE------------ 160
L ++Y QRQ S++ ++ + YN+ +
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL--------YNDNQVFAKYNVSRLQP 136
Query: 161 -------LSQIDSTKLTWTVYTMM----SNLAM--CLLGWWRCFANNYLQWAAVGTW--- 204
L ++ K + ++ + +A+ CL +C + + W +
Sbjct: 137 YLKLRQALLELRPAKNV-LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 205 --ILLNTQGWWRCFANNYLQWAAVGTWILLNTQGFISQGIGL-NNKEY----LI----WY 253
+L Q N+ + + I L ++ L +K Y L+
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 254 ILFIVFVTYAMLPLPLKWC---FIGGC----TTS------VLHVIITAQIKL--HRGPLS 298
F C TT L T I L H L+
Sbjct: 256 ----------------AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 299 PCSVHEMGALCLVYIGI 315
P E+ +L L Y+
Sbjct: 300 P---DEVKSLLLKYLDC 313
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 352
Score = 30.7 bits (69), Expect = 0.84
Identities = 11/79 (13%), Positives = 29/79 (36%)
Query: 2 RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
R A + + +EE + ++ K K + + K+ + +K
Sbjct: 68 SFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSKRFLEIQK 127
Query: 62 KKEEQSVKEIEESLKERKE 80
+E + +++ +L K+
Sbjct: 128 LREIKQEYDLKTALSLMKQ 146
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_R 4a1c_R 4a1e_R
Length = 150
Score = 29.4 bits (66), Expect = 0.85
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 42 NKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTLT 84
NK+ K + K K K KK + + ++ + KTL
Sbjct: 2 NKENKTQAVNKAKNTAKVAKKGSSITKHKTYTGVRFFRPKTLQ 44
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins
binding, carbohydrate binding, calcium binding,
endoplasmic reticulu; 2.57A {Mus musculus}
Length = 332
Score = 30.4 bits (68), Expect = 0.87
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 30 EEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
+E E+ E K +K+ K K+ ++++ K E
Sbjct: 291 DEAYAEEFGNETWGVTKAAEKQMKDKQDEEQRLKLEHH 328
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 30.6 bits (68), Expect = 0.88
Identities = 17/62 (27%), Positives = 20/62 (32%)
Query: 2 RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
+RR K E K + EEEK KK K +KKK
Sbjct: 359 ARRRQQRESKSNAATPTKGPEGKVAGPADAPMDSGAEEEKAGAATVKKPSPSKARKKKLN 418
Query: 62 KK 63
KK
Sbjct: 419 KK 420
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone
H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain,
histone deacetylase; HET: M2L; NMR {Saccharomyces
cerevisiae}
Length = 136
Score = 29.3 bits (64), Expect = 0.92
Identities = 5/33 (15%), Positives = 9/33 (27%)
Query: 25 EENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKK 57
EEN +K + K + +
Sbjct: 104 EENIAMKKRLANEAGSTGSAPATGGVXKPHRYR 136
Score = 29.3 bits (64), Expect = 1.1
Identities = 4/36 (11%), Positives = 8/36 (22%)
Query: 24 KEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKK 59
E +K E + K + +
Sbjct: 101 AYNEENIAMKKRLANEAGSTGSAPATGGVXKPHRYR 136
Score = 28.5 bits (62), Expect = 1.6
Identities = 5/36 (13%), Positives = 10/36 (27%)
Query: 25 EENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
NE+ K+ + E K + +
Sbjct: 101 AYNEENIAMKKRLANEAGSTGSAPATGGVXKPHRYR 136
Score = 28.5 bits (62), Expect = 1.7
Identities = 2/36 (5%), Positives = 7/36 (19%)
Query: 26 ENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
+E + + K + +
Sbjct: 101 AYNEENIAMKKRLANEAGSTGSAPATGGVXKPHRYR 136
Score = 27.8 bits (60), Expect = 3.1
Identities = 3/36 (8%), Positives = 8/36 (22%)
Query: 28 EQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKK 63
E+ + N+ K + +
Sbjct: 101 AYNEENIAMKKRLANEAGSTGSAPATGGVXKPHRYR 136
Score = 27.4 bits (59), Expect = 4.0
Identities = 3/41 (7%), Positives = 12/41 (29%)
Query: 16 EKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKK 56
R + +E +++ + + K + +
Sbjct: 96 YDRIRAYNEENIAMKKRLANEAGSTGSAPATGGVXKPHRYR 136
>2yk0_A Erythrocyte membrane protein 1; adhesin, pfemp1; 2.80A {Plasmodium
falciparum}
Length = 790
Score = 30.6 bits (69), Expect = 0.92
Identities = 21/121 (17%), Positives = 39/121 (32%), Gaps = 2/121 (1%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
K + E + Q K+K+D+ K+ K K K + K K K+ +
Sbjct: 671 VLKNKEEYEICNVDDNCRSQNNKKKKDIVTILLKELKDKIVSCKNQHKATKGKECCDKLP 730
Query: 70 EIEESLKERKEKTLTEDSQCDTMIPVFKKGVLYKGIYCPSLTNSFREPSLEMSYQRYSHR 129
+I + E+ E P + + S + + M Q +H
Sbjct: 731 KIADGDTSDDEEQEDEAPAPPKPKPPSTPNPCVRKDQSGTHIVSVEDVAEWM--QGVTHD 788
Query: 130 Q 130
+
Sbjct: 789 R 789
>3iz5_T 60S ribosomal protein L19 (L19E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_T
Length = 209
Score = 30.1 bits (67), Expect = 0.92
Identities = 13/67 (19%), Positives = 30/67 (44%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
M + G K KR+ + + K E +E+ + E ++ K K +++K +++++
Sbjct: 123 MYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKSKASRERKIARREERLA 182
Query: 61 KKKEEQS 67
E
Sbjct: 183 PGPERSC 189
Score = 28.1 bits (62), Expect = 3.8
Identities = 8/60 (13%), Positives = 28/60 (46%)
Query: 17 KRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLK 76
KR E +++ E+ ++ + ++ K+ K K +++K +++++ + +
Sbjct: 135 KRVLMESIHKSKAEKAREKTLSDQFEAKRAKSKASRERKIARREERLAPGPERSCTSTSG 194
>2w4s_A Ankyrin-repeat protein; RNA transport, structural protein; 2.45A
{Cryptosporidium parvum}
Length = 113
Score = 28.8 bits (64), Expect = 0.94
Identities = 7/39 (17%), Positives = 17/39 (43%)
Query: 20 KEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKK 58
K+ E+ ++ +EEK + K K+ ++ +
Sbjct: 74 KQLVAEDQITIQEWNYIRQEEKERINAKNILKRNNRRCQ 112
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis;
2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Length = 337
Score = 30.3 bits (67), Expect = 0.98
Identities = 13/66 (19%), Positives = 30/66 (45%)
Query: 12 KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
KK KEE + + E + +KK K K ++ +K ++K E+ ++++
Sbjct: 154 KKAYHLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEKVLEDV 213
Query: 72 EESLKE 77
++ +
Sbjct: 214 GKTTPQ 219
Score = 27.6 bits (60), Expect = 6.1
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKK-KKKKKKKKKKKKEEQSV 68
EK K +K ++ +E KE ED + K KK K+ + KK KEE+
Sbjct: 108 EKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEERLA 167
Query: 69 KEIEESLKERKEKT 82
E + K + T
Sbjct: 168 MTREMNSKTEQSVT 181
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.00A
{Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A
3q84_A
Length = 312
Score = 30.2 bits (67), Expect = 1.00
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 12 KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
KK KEE+ + + + + + KK + K +K K+ K K+K E+S+KE+
Sbjct: 163 KKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKEL 222
Query: 72 EESLKE 77
++ +
Sbjct: 223 DQGTPQ 228
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_D
Length = 405
Score = 30.2 bits (67), Expect = 1.00
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 27 NEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKK 63
K E + K +K+K K+ K ++ K
Sbjct: 337 FGTARKMATLAEAARIKARKEKLDSKRTKLSPEEAAK 373
Score = 30.2 bits (67), Expect = 1.1
Identities = 6/39 (15%), Positives = 18/39 (46%)
Query: 32 KEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
++ + E K +K+K K+ K ++ + ++ +
Sbjct: 341 RKMATLAEAARIKARKEKLDSKRTKLSPEEAAKVKAAGK 379
Score = 27.9 bits (61), Expect = 5.4
Identities = 9/51 (17%), Positives = 19/51 (37%)
Query: 37 VEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTLTEDS 87
+ + + K +K+K K+ K ++ + KT+ DS
Sbjct: 339 TARKMATLAEAARIKARKEKLDSKRTKLSPEEAAKVKAAGKAWYKTMISDS 389
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix,
PSI, protein structure INI midwest center for structural
genomics; 1.60A {Staphylococcus aureus subsp} SCOP:
a.24.27.1
Length = 199
Score = 29.9 bits (66), Expect = 1.0
Identities = 11/84 (13%), Positives = 32/84 (38%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
K I+ + ++ E E++ +K + + +K K K+K+ K+ +
Sbjct: 67 AVKDLIKNADDRLKEFEKEEDAIKKSEQDFKKAKSHVDNIDNDVKRKEVKQLDDVLKEKY 126
Query: 70 EIEESLKERKEKTLTEDSQCDTMI 93
++ + +K + + +
Sbjct: 127 KLHSDYAKAYKKAVNSEKTLFKYL 150
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation,
vacuolar type, hydrolase, ATP synthesis, ATP-binding,
hydrogen ION transport; HET: ADP; 4.51A {Thermus
thermophilus} PDB: 3a5d_G 3j0j_G*
Length = 223
Score = 29.8 bits (66), Expect = 1.0
Identities = 8/42 (19%), Positives = 21/42 (50%)
Query: 26 ENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
+ E++E+ED K K K + ++ +++ + + E +
Sbjct: 180 QQVLEQREREDTFRLKRIKGKIEAREAEEEGGRPNPQVEIGA 221
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 30.3 bits (68), Expect = 1.0
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 16 EKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
+ ++E++ E NK +K + K K KK
Sbjct: 5 HHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKK 49
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine
exchange factor, coiled-coil, endocytosis/exocytosis
complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Length = 154
Score = 29.4 bits (65), Expect = 1.1
Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE--EQS 67
+ + + + + +E E + E+E + + +E + +K+K E
Sbjct: 57 DDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEIL 116
Query: 68 VKEIEESLKERKEKTLTEDSQCDTM 92
K + E L+E+ T Q +
Sbjct: 117 NKRLTEQLREKDTLLDTLTLQLKNL 141
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R
1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R*
1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U*
1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Length = 88
Score = 28.1 bits (63), Expect = 1.1
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 41 KNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
K K KK+ +++ +K K K
Sbjct: 2 STKNAKPKKEAQRRPSRKAKVKATLGEFDLR 32
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_8
Length = 143
Score = 29.4 bits (65), Expect = 1.1
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 28 EQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSV 68
+Q ++ +E K + KK KKK K K K K +V
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDKVNHAV 43
Score = 29.0 bits (64), Expect = 1.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 24 KEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKK 59
K+ ++K KE + + KK KKK K K K K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 29.0 bits (64), Expect = 1.3
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 41 KNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
KK K+ K + KK KKK + K+
Sbjct: 8 GQKKTKEAIAKAAQAKKGGKKKWTKGKAKD 37
Score = 26.7 bits (58), Expect = 9.3
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 34 KEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
K+ +K K+ K + KK KKK K + K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
>2og2_A Putative signal recognition particle receptor;
nucleotide-binding, protein transport; 2.00A
{Arabidopsis thaliana}
Length = 359
Score = 30.0 bits (68), Expect = 1.2
Identities = 7/66 (10%), Positives = 19/66 (28%), Gaps = 3/66 (4%)
Query: 17 KRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLK 76
K + E + + +++ + + K++ +S E +
Sbjct: 5 KETAAAKFGERQHMDSPDLGTDDDDKAMACSAGPSGFFTRLGRLIKEKAKSDVE---KVF 61
Query: 77 ERKEKT 82
KT
Sbjct: 62 SGFSKT 67
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 30.1 bits (68), Expect = 1.2
Identities = 12/74 (16%), Positives = 24/74 (32%)
Query: 7 GAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQ 66
G K E+ K +E + + + + + KK++ + E+
Sbjct: 174 GVDALVKDGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVEYVKKERAGLRLPLAAWVEK 233
Query: 67 SVKEIEESLKERKE 80
+ E L E E
Sbjct: 234 EAYKPGEILAELPE 247
Score = 30.1 bits (68), Expect = 1.3
Identities = 8/73 (10%), Positives = 23/73 (31%)
Query: 2 RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
R + ++ K+ E+ QE + + ++ + + KK++
Sbjct: 162 RYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVEYVKKERA 221
Query: 62 KKEEQSVKEIEES 74
+E+
Sbjct: 222 GLRLPLAAWVEKE 234
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A
{Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Length = 102
Score = 28.6 bits (63), Expect = 1.2
Identities = 4/27 (14%), Positives = 15/27 (55%)
Query: 35 EDVEEEKNKKKKKKKKKKKKKKKKKKK 61
+ V+ K+++ +K +++ + K +
Sbjct: 76 KYVDTNLQKQRELQKANQEQYAEGKMR 102
Score = 28.2 bits (62), Expect = 1.7
Identities = 4/24 (16%), Positives = 15/24 (62%)
Query: 40 EKNKKKKKKKKKKKKKKKKKKKKK 63
+ N +K+++ +K +++ + K +
Sbjct: 79 DTNLQKQRELQKANQEQYAEGKMR 102
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase,
structural genomics, NPPSFA; 3.60A {Methanocaldococcus
jannaschii}
Length = 549
Score = 29.9 bits (67), Expect = 1.3
Identities = 6/40 (15%), Positives = 21/40 (52%)
Query: 24 KEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKK 63
K ++++++K + D+++ +K + ++ + K K
Sbjct: 2 KLKHKRDDKMRFDIKKVLELAEKDFETAWRETRALIKDKH 41
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 29.5 bits (66), Expect = 1.3
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 32 KEKEDVEEEKNKKKKKKKKK---KKKKKKKKKKKKEEQSVKEIEESLKE 77
V +EK + + K K +++ E +++I+E L E
Sbjct: 181 SNNTTVFKEKWQNELNKLTFALNSIPNSKMEERAILEDKIQDIKEVLDE 229
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli,
hydrolase; 1.90A {Escherichia coli}
Length = 303
Score = 29.9 bits (68), Expect = 1.3
Identities = 2/42 (4%), Positives = 11/42 (26%)
Query: 29 QEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
+ ++ E + + + K +++
Sbjct: 257 KVDESLEKLADGDLGTLVPRGSMAISDPNSSSVDKLAAALEH 298
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct
genomics, riken structural genomics/proteomics
initiative; NMR {Mus musculus} SCOP: b.34.13.3
Length = 133
Score = 29.0 bits (64), Expect = 1.3
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 12 KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
K R+ ++ + E+ E E+ + K + +K+K + +K E
Sbjct: 64 KNRLALTKTVKDAVQKNSEKYLSELAEQPERKITRNQKRKHDEINHVQKTYAEMDPTTAA 123
Query: 72 EESLKERKEKT 82
E KE +
Sbjct: 124 LE--KESGPSS 132
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 30.1 bits (68), Expect = 1.3
Identities = 9/69 (13%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 12 KKRIE---KRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSV 68
KR++ K+ E+++ ED+E +++++ + ++ ++ + S+
Sbjct: 100 LKRLDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDSQRASL 159
Query: 69 KEIEESLKE 77
++ L+
Sbjct: 160 EDGTSQLQY 168
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga
maritima}
Length = 352
Score = 29.7 bits (67), Expect = 1.3
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 12 KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKK 57
KK E + E E + K VE +K+ + K K++K
Sbjct: 185 KKGKEVKQGEMLAEARKFFAKVSGRVEVVDYSTRKEIRIYKTKRRK 230
Score = 27.0 bits (60), Expect = 9.4
Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 13 KRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKK 59
+ + E K + + E V+ +K+ + K K++K
Sbjct: 190 VKQGEMLAEARKFFAKVSGRV-EVVD-----YSTRKEIRIYKTKRRK 230
>2y9y_B IOC3, ISWI one complex protein 3; transcription, nuclear protein
complex, chromatin remodeling nucleosome remodeling;
3.25A {Saccharomyces cerevisiae} PDB: 2y9z_B
Length = 624
Score = 29.9 bits (66), Expect = 1.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 42 NKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
+ KKK K+ K+ KK ++ + +KEI+ LK +
Sbjct: 332 IRSKKKHFVKQLKEGKKPDLSRKLEILKEIKAELKNAVKS 371
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor,
acetylation, DNA-binding, isopeptide bond, nucleus;
2.80A {Mus musculus}
Length = 107
Score = 28.5 bits (63), Expect = 1.4
Identities = 12/71 (16%), Positives = 30/71 (42%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
E + + +KEE + ++ K + K+ +K++ +K+K + +++ E+
Sbjct: 20 ELNQHLRGLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLAS 79
Query: 70 EIEESLKERKE 80
E E
Sbjct: 80 ENASMKLELDA 90
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_M 4a1c_M 4a1e_M
Length = 301
Score = 29.7 bits (66), Expect = 1.4
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 44 KKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTLTE 85
+ K KK K K+ KK + + + ++ +K + + L++
Sbjct: 260 RVKSTKKNDKPKRDHKKFYPTKLTAAQRKDRVKTKFQLALSQ 301
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A;
translation, ribosome, ribosomal R ribosomal protein,
STM1, eukaryotic ribosome; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5i_g 3izc_i 3izs_i
Length = 121
Score = 28.5 bits (63), Expect = 1.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 37 VEEEKNKKKKKKKKKKKKKKKKKKKKK 63
+EE+K KK K++ + KK +KK KK
Sbjct: 95 IEEQKIVKKVVKEQTEAAKKSEKKAKK 121
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 29.8 bits (67), Expect = 1.5
Identities = 8/48 (16%), Positives = 18/48 (37%)
Query: 41 KNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTLTEDSQ 88
K+ K+ ++K + KK+ + + E+ K +Q
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQ 675
Score = 29.4 bits (66), Expect = 2.3
Identities = 7/52 (13%), Positives = 16/52 (30%)
Query: 43 KKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTLTEDSQCDTMIP 94
K K+ ++K + KK+ + E + + + P
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTP 679
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil,
endocytosis/exocytosis complex; 3.00A {Saccharomyces
cerevisiae} SCOP: h.1.33.1
Length = 135
Score = 28.7 bits (63), Expect = 1.5
Identities = 13/85 (15%), Positives = 31/85 (36%), Gaps = 2/85 (2%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE--EQS 67
+ + + + + +E E + E+E + + +E + + +K E
Sbjct: 45 DDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEIL 104
Query: 68 VKEIEESLKERKEKTLTEDSQCDTM 92
K + E L+E+ T Q +
Sbjct: 105 NKRLTEQLREKDMLLDTLTLQLKNL 129
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB:
2qy9_A 2xxa_B* 1fts_A
Length = 503
Score = 29.8 bits (67), Expect = 1.6
Identities = 15/84 (17%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 8 AGEKKKRI---EKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
A EKK+ ++E+ E E E + ++ V EE + ++ K ++ +++ + E
Sbjct: 2 AKEKKRGFFSWLGFGQKEQTPEKETEVQNEQPVVEEIVQAQEPVKASEQAVEEQPQAHTE 61
Query: 65 EQSVKEIEESLKERKEKTLTEDSQ 88
++ + ++ ++ +E +Q
Sbjct: 62 AEAETFAADVVEVTEQVAESEKAQ 85
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_G
Length = 219
Score = 29.2 bits (65), Expect = 1.6
Identities = 10/53 (18%), Positives = 16/53 (30%)
Query: 41 KNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTLTEDSQCDTMI 93
K K K +K + K VK S ++ L T++
Sbjct: 29 KAKHGGALPKAEKPAAIAEPKFYPADDVKPRTVSTRKPHPTKLRSTITPGTVL 81
Score = 26.9 bits (59), Expect = 9.8
Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKK 58
RRG K K K E+ + K ++ + +K K +
Sbjct: 19 TYHRRGLWAIKAKHGGALPKAEKP---AAIAEPKFYPADDVKPRTVSTRKPHPTKLRS 73
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase;
18.00A {Escherichia coli} PDB: 2y7h_A*
Length = 464
Score = 29.8 bits (67), Expect = 1.7
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 14 RIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKK 56
+ + + E + E +E+ K ++ KK +KK
Sbjct: 421 ELTAQWRAENPDLISGENSAAALLEKIKAERAASGGKKASRKK 463
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Length = 323
Score = 29.6 bits (66), Expect = 1.7
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 15 IEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKK----KKKKKKKKKKKEEQSVKE 70
++K +E ++K E KK+K KK K ++EE + +
Sbjct: 259 VKKYEPPRSEEVAVLKQKLDRCHSAELALNVITKKRKGYEDDDYVSKKSKHEEEEWTDDD 318
Query: 71 IEESL 75
+ ESL
Sbjct: 319 LVESL 323
Score = 28.5 bits (63), Expect = 3.5
Identities = 9/65 (13%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 28 EQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTLTEDS 87
++ E + + +K + + KK+K + + + K +E+ T+D
Sbjct: 260 KKYEPPRSEEVAVLKQKLDRCHSAELALNVITKKRKGYEDDDYVSKKSKHEEEEW-TDDD 318
Query: 88 QCDTM 92
+++
Sbjct: 319 LVESL 323
>2enk_A HUEL, solute carrier family 30 member 9; cation transporter,
cobalt, zinc, cadmium, protein of unknown function
DUF993, embryonic LUNG protein; NMR {Homo sapiens}
Length = 101
Score = 27.9 bits (62), Expect = 1.7
Identities = 6/31 (19%), Positives = 17/31 (54%)
Query: 34 KEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
E + EK +K+ + + +++ + +K +E
Sbjct: 68 PEALAREKKLRKEAEIEYRERLFRNQKILRE 98
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_G
Length = 113
Score = 28.0 bits (62), Expect = 1.8
Identities = 6/39 (15%), Positives = 15/39 (38%)
Query: 43 KKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
K+ + K K+ K + + + ++ +K K
Sbjct: 5 KEAAAVAEGKSKQDASPKPYAVKYGLNHVVALIENKKAK 43
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Length = 110
Score = 28.0 bits (62), Expect = 1.8
Identities = 5/33 (15%), Positives = 15/33 (45%)
Query: 47 KKKKKKKKKKKKKKKKKEEQSVKEIEESLKERK 79
+ K + + K +++++E + +E K
Sbjct: 71 VEGDKSFAEGQTSINKTFKKALEEAAKRFQELK 103
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 29.6 bits (66), Expect = 1.9
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 16 EKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
+ ++E++ E NK +K + K K KK
Sbjct: 5 HHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKK 49
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A
{Helicobacter pylori}
Length = 569
Score = 29.4 bits (65), Expect = 2.0
Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
Query: 15 IEKRNKEEEKEENEQE------EKEKEDVEEEKNKKKKKKKKKKKKKK---KKKKKKKEE 65
++K K+ EK ++E EK+ E KNK + K + +K + K+ +
Sbjct: 352 VKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRD 411
Query: 66 QSVKEIEESLKERKEKTLTEDSQCDTMIPVFKK 98
++LK K + + + + F K
Sbjct: 412 ARAIAYTQNLKGIKRELSDKLEKISKDLKDFSK 444
>2o8g_I IPP-2, protein phosphatase inhibitor 2; hydrolase-inhibitor comple;
2.50A {Mus musculus} PDB: 2o8a_I
Length = 206
Score = 29.0 bits (64), Expect = 2.1
Identities = 16/71 (22%), Positives = 25/71 (35%)
Query: 21 EEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKE 80
EE + EE+EK+ E K K + K ++ K + E +
Sbjct: 124 GEEDNDLSPEEREKKRQFEMKRKLHYNEGLNIKLARQLISKDLHDDDEDEEMAETADGDS 183
Query: 81 KTLTEDSQCDT 91
+ E SQ T
Sbjct: 184 MNVEESSQGST 194
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology,
protein structure initiati northeast structural
genomics consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 29.2 bits (65), Expect = 2.1
Identities = 4/33 (12%), Positives = 12/33 (36%)
Query: 27 NEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKK 59
N + ++ + ++ K K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 29.2 bits (65), Expect = 2.4
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 26 ENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKK 58
+E + D+ N K K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 28.8 bits (64), Expect = 2.8
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 38 EEEKNKKKKKKKKKKKKKKKKKKKKK 63
+E +N+ + K K+ +K
Sbjct: 8 QEPQNRDISSRSNGKNPFKRSTGRKV 33
Score = 28.8 bits (64), Expect = 3.0
Identities = 3/25 (12%), Positives = 9/25 (36%)
Query: 39 EEKNKKKKKKKKKKKKKKKKKKKKK 63
+ ++ + K K+ +K
Sbjct: 11 QNRDISSRSNGKNPFKRSTGRKVSN 35
Score = 28.8 bits (64), Expect = 3.3
Identities = 4/33 (12%), Positives = 11/33 (33%)
Query: 30 EEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
+ +E + + + K K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 28.4 bits (63), Expect = 4.3
Identities = 3/26 (11%), Positives = 7/26 (26%)
Query: 38 EEEKNKKKKKKKKKKKKKKKKKKKKK 63
+ + K K+ +K
Sbjct: 11 QNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 28.0 bits (62), Expect = 4.8
Identities = 5/33 (15%), Positives = 10/33 (30%)
Query: 25 EENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKK 57
QE + ++ K K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 28.0 bits (62), Expect = 4.8
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 38 EEEKNKKKKKKKKKKKKKKKKKKKKK 63
E + + K K+ +K
Sbjct: 9 EPQNRDISSRSNGKNPFKRSTGRKVS 34
Score = 28.0 bits (62), Expect = 5.6
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 38 EEEKNKKKKKKKKKKKKKKKKKKKKK 63
+E + + K K+ +K
Sbjct: 7 YQEPQNRDISSRSNGKNPFKRSTGRK 32
Score = 27.6 bits (61), Expect = 7.2
Identities = 4/34 (11%), Positives = 12/34 (35%)
Query: 27 NEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
+ + +E ++ + K K+ +K
Sbjct: 3 SNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil,
transcription/DNA complex; 6.50A {Thermus aquaticus}
SCOP: i.8.1.1
Length = 438
Score = 29.2 bits (65), Expect = 2.1
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 52 KKKKKKKKKKKKEEQSVKEIEESLKERKEKTLTEDSQ 88
KK K KKK K +E VKE + + E ED Q
Sbjct: 2 KKSKSKKKAAKAQEVEVKEPVKEPEPLPELEAAEDLQ 38
Score = 29.2 bits (65), Expect = 2.3
Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 37 VEEEKNKKKKKKKKKKK-KKKKKKKKKKEEQSVKEIEESLKERKEKTLTEDSQCDTMIPV 95
+++ K+KKK K ++ + K+ K+ + E E + L E + L + + + +
Sbjct: 1 MKKSKSKKKAAKAQEVEVKEPVKEPEPLPELEAAEDLQDLPEPDPELLASEPELEDLADP 60
Query: 96 FKK 98
Sbjct: 61 LDL 63
>1f3u_B Transcription initiation factor IIF, alpha subunit; general
transcription initiation and elongation factor, RNA
polymerase II; 1.70A {Homo sapiens} SCOP: b.65.1.1
Length = 171
Score = 28.6 bits (63), Expect = 2.2
Identities = 11/56 (19%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 16 EKRNKEEEKEENEQEEKEKEDVEE-----EKNKKKKKKKKKKKKKKKKKKKKKEEQ 66
E++ + ++ ++E++ E E N+K +++ ++KK K+ + E+Q
Sbjct: 40 TWNQARLERDLSNKKIYQEEEMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQ 95
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane
protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Length = 602
Score = 29.3 bits (64), Expect = 2.2
Identities = 11/74 (14%), Positives = 31/74 (41%)
Query: 9 GEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSV 68
G K ++ ++ E+++KE + ++K+ + K+ + K+ +
Sbjct: 28 GNKTIWGGNEWVDDSPTRSDIEKRDKEITAYKNTLSAQQKENENKRTEAGKRLSAAIAAR 87
Query: 69 KEIEESLKERKEKT 82
++ E +LK +
Sbjct: 88 EKDENTLKTLRAGN 101
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil,
alanine, axial stagger, radius, SIDE-chain packing,
crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Length = 147
Score = 28.5 bits (63), Expect = 2.2
Identities = 16/81 (19%), Positives = 36/81 (44%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
K + K IE R +++E++ QE + KE ++ +K ++ +K +
Sbjct: 29 AEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESD 88
Query: 61 KKKEEQSVKEIEESLKERKEK 81
++ E+ + E E +E+
Sbjct: 89 LERAEERAELSEGKCAELEEE 109
Score = 27.3 bits (60), Expect = 5.3
Identities = 14/78 (17%), Positives = 39/78 (50%)
Query: 15 IEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEES 74
+ +R + E+E + +E+ +++ + +K + ++ K + + +K+E+ ++ E
Sbjct: 1 MNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQ 60
Query: 75 LKERKEKTLTEDSQCDTM 92
LKE K D + + +
Sbjct: 61 LKEAKHIAEDADRKYEEV 78
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 28.2 bits (62), Expect = 2.2
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 210 QGWWRCFANNYLQWAAVGTWILLNTQGFISQGIGLNN 246
QG + C A++ L T++ ++ + F++ G G+ +
Sbjct: 86 QGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMES 122
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis
thaliana}
Length = 116
Score = 28.0 bits (62), Expect = 2.3
Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 13 KRIEKRNKEEEKEENEQE---EKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
KRI K EKE + K+ + + K+++ + + K+ E ++
Sbjct: 18 KRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRMMIPDCHKRLESALA 77
Query: 70 EIEESLKERKEKTLTEDSQ 88
+++ +L E +E E +
Sbjct: 78 DLKSTLAELEETDEKEGPE 96
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 28.7 bits (64), Expect = 2.3
Identities = 7/29 (24%), Positives = 20/29 (68%)
Query: 37 VEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
+ +K +KK+ ++KK+ + +++K +E+
Sbjct: 101 FQLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 27.6 bits (61), Expect = 6.3
Identities = 7/28 (25%), Positives = 19/28 (67%)
Query: 39 EEKNKKKKKKKKKKKKKKKKKKKKKEEQ 66
+ + ++KK+ ++KK+ + +++K EE
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 27.2 bits (60), Expect = 8.0
Identities = 7/24 (29%), Positives = 17/24 (70%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKE 33
E+KK++ + K++ + E E+ E++
Sbjct: 106 EQKKQLTSQEKKQIRLEREKFEED 129
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant,
chromatin, X- RAY structure, crystallography,
structural protein/DNA complex; 2.90A {Mus musculus}
SCOP: a.22.1.1
Length = 149
Score = 28.3 bits (62), Expect = 2.3
Identities = 6/55 (10%), Positives = 17/55 (30%)
Query: 24 KEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKER 78
+ + + K+ K + K K + + + V + L++
Sbjct: 3 SSHHHHHHSSGLVPRGSMSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKG 57
>2xzm_2 40S ribosomal protein S8; ribosome, translation; 3.93A {Tetrahymena
thermophila} PDB: 2xzn_2
Length = 208
Score = 28.6 bits (63), Expect = 2.4
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 31 EKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQ 66
K+ V K K + +K+ K+ K + +K EEQ
Sbjct: 131 LKKDRTVLGNKEKSRHVQKRVKRTKAQALEKNIEEQ 166
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap
DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A
{Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Length = 379
Score = 29.1 bits (65), Expect = 2.5
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 32 KEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKK 63
+E K KKK K K K+ K
Sbjct: 348 SLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 27.9 bits (62), Expect = 5.5
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 8/55 (14%)
Query: 13 KRIEKRNKEEE--------KEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKK 59
KR+ K + K ++++ E + + KKK K K K+ K
Sbjct: 325 KRLSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1
a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F*
2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Length = 423
Score = 29.1 bits (65), Expect = 2.5
Identities = 9/88 (10%), Positives = 23/88 (26%), Gaps = 1/88 (1%)
Query: 14 RIEKRNKEEEKEENEQ-EEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIE 72
++ EEE E + EE + + + ++ + K + E
Sbjct: 90 QVPLLTLEEEVELARKVEEGMEAIKKLSEITGLDPDLIREVVRAKILGSARVRHIPGLKE 149
Query: 73 ESLKERKEKTLTEDSQCDTMIPVFKKGV 100
+ E+ + +
Sbjct: 150 TLDPKTVEEIDQKLKSLPKEHKRYLHIA 177
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse,
BAR domain, endocytosis; 2.60A {Mus musculus} PDB:
3qe6_A
Length = 320
Score = 29.0 bits (64), Expect = 2.5
Identities = 11/68 (16%), Positives = 30/68 (44%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
KK K+E+ + + + + ++ +K +++ + K+ +K K + EQ++
Sbjct: 152 ASKKSYHTARKDEKTAQTRESHAKADSSMSQEQLRKLQERVGRCTKEAEKMKTQYEQTLA 211
Query: 70 EIEESLKE 77
E+
Sbjct: 212 ELNRYTPR 219
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis,
apoptosis, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 134
Score = 28.1 bits (62), Expect = 2.5
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 9/63 (14%)
Query: 12 KKRIEKRNKEEEKEEN-------EQEEKE--KEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
K R E + E E+KE K+ + K++ K+K + + KKK
Sbjct: 70 KNREELGFRPEYSASQLKGFSLLATEDKEALKKQLPGVKSEGKRKGDEVDGVDEVAKKKS 129
Query: 63 KEE 65
Sbjct: 130 GPS 132
Score = 27.0 bits (59), Expect = 6.6
Identities = 7/44 (15%), Positives = 15/44 (34%)
Query: 22 EEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
++E +K+ + K+K + + KKK
Sbjct: 90 SLLATEDKEALKKQLPGVKSEGKRKGDEVDGVDEVAKKKSGPSS 133
>3ffd_P PTH-RP, PTHRP, parathyroid hormone-related protein; PTHRP complexed
to FAB, alternative splicing, calcium, cleavage on PAIR
of basic residues; 2.00A {Homo sapiens} PDB: 1bzg_A
Length = 108
Score = 27.8 bits (61), Expect = 2.5
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 7 GAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKK 63
+ K + ++E QE + E +E+ K KKKK K K+K+++KKK
Sbjct: 48 PSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLKTPGKKKKGKPGKRKEQEKKK 104
Score = 26.3 bits (57), Expect = 7.8
Identities = 14/65 (21%), Positives = 29/65 (44%)
Query: 2 RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
+ K + + +E + ++ K + E+ KKKK K K+K+++KK
Sbjct: 44 PNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLKTPGKKKKGKPGKRKEQEKK 103
Query: 62 KKEEQ 66
K+ +
Sbjct: 104 KRRTR 108
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 28.8 bits (65), Expect = 2.6
Identities = 10/43 (23%), Positives = 23/43 (53%)
Query: 32 KEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEES 74
K+ E E ++ K +++K+ K+ + K K+ V+++ S
Sbjct: 254 KDFELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEKVVVS 296
Score = 27.6 bits (62), Expect = 7.5
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 19 NKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKK 58
K+ E EE ++E+ E+E +E K K+ + +K
Sbjct: 253 TKDFELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEK 292
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle
protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Length = 101
Score = 27.5 bits (61), Expect = 2.7
Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 11 KKK----RIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQ 66
KKK +++K N + E+ E ++K E+ ++ + +K+ + + + + EE
Sbjct: 8 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEE- 66
Query: 67 SVKEIEESLKERKEKTLTE 85
+ + E+SL E+ +
Sbjct: 67 -LHKSEDSL-LFAEENAAK 83
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large
ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila}
PDB: 4a19_E 4a1b_E 4a1d_E
Length = 191
Score = 28.5 bits (63), Expect = 2.7
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 36 DVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTLTEDSQ 88
+ + ++ ++K +K K K + EEQ KE E RK+ D+
Sbjct: 108 NTAKFEDDYFGREKARKNHKNLFKAELTEEQKKKETERK-NARKQDQQAVDTP 159
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 28.7 bits (64), Expect = 2.7
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 32 KEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE--QSVKEIEESLKE 77
K K E + + + + + K E + +E+ LKE
Sbjct: 190 KSKWRHEANTWQNIIQTISNNQPVSTENQAKIRELEHKIALVEDVLKE 237
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 28.1 bits (63), Expect = 2.8
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 34 KEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
V E +++ +KK + K
Sbjct: 131 ASVVAREMKIVTERRAEKKADSRVTYSK 158
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP
binding site AN site being FAR from EACH other,
structural genomics, PSI; HET: GDP; 2.00A {Aquifex
aeolicus} SCOP: a.211.1.1
Length = 371
Score = 28.7 bits (64), Expect = 2.9
Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 3 KRRGGAGEKKKRIEKRN---KEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKK 59
+R E +RI +R E E+ + KE + E+ ++K + + +K+
Sbjct: 265 FKRKAFREDFERIFQRKHFKTLLSTENYEKFSETKERLLEKFPQEKVRFDEVEKEVYGGN 324
Query: 60 KKKKEEQSVKEIEE 73
+ +K+ E
Sbjct: 325 IYVLSSEGLKKAHE 338
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1;
ribonucleotide reductase, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
Length = 419
Score = 28.8 bits (64), Expect = 2.9
Identities = 20/85 (23%), Positives = 33/85 (38%)
Query: 11 KKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
K + + E K+ KE E + EE K K+K K + K + V
Sbjct: 27 SKAAADALSDLEIKDSKSNLNKELETLREENRVKSDMLKEKLSKDAENHKAYLKSHQVHR 86
Query: 71 IEESLKERKEKTLTEDSQCDTMIPV 95
+ E++E L ED + + P+
Sbjct: 87 HKLKEMEKEEPLLNEDKERTVLFPI 111
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 28.7 bits (63), Expect = 3.0
Identities = 9/53 (16%), Positives = 26/53 (49%)
Query: 14 RIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQ 66
R E+ + K ENE K++ +E+E ++ ++ + + + + + + +
Sbjct: 300 RSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDG 352
Score = 27.5 bits (60), Expect = 7.4
Identities = 8/58 (13%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 11 KKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSV 68
++ + R E E +Q EKE E + ++ + + + + + + +
Sbjct: 302 ERLKRGGRKVENEDMNKDQILLEKE---AELRRMQEMIARMQAQMQMQMQGGDGDGGA 356
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn
finger, ADP-ribosylation, D damage, DNA repair,
DNA-binding, glycosyltransferase; 1.70A {Homo sapiens}
PDB: 2jvn_A
Length = 160
Score = 28.1 bits (62), Expect = 3.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 40 EKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKE 77
++ KKK KK+K K K +K K + + I++ LK+
Sbjct: 3 DEVAKKKSKKEKDKDSKLEKALKAQNDLIWNIKDELKK 40
Score = 26.9 bits (59), Expect = 6.9
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 11/64 (17%)
Query: 37 VEEEKNKKKKKKKKKKKKKKKK-----------KKKKKEEQSVKEIEESLKERKEKTLTE 85
V+E KK KK+K K K +K K + K+ S +++E L K++ +
Sbjct: 2 VDEVAKKKSKKEKDKDSKLEKALKAQNDLIWNIKDELKKVCSTNDLKELLIFNKQQVPSG 61
Query: 86 DSQC 89
+S
Sbjct: 62 ESAI 65
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 28.5 bits (64), Expect = 3.2
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 4 RRGGAGEKKKRIEKRNKEEEKEENEQEEKEKED--VEEEKNKKKKKKKKKKKKKKKKKKK 61
RR + K + + + + +E ED ++ E K K+K K +K K+K K
Sbjct: 312 RRAQGWQGLKEYD----QALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAK 367
>3ve2_A TBP-2, transferrin-binding protein 2; lipoprotein, transferrin
receptor, iron acquisition, vaccine candidate; 2.14A
{Neisseria meningitidis serogroup B} PDB: 3ve1_A 3v8u_A
Length = 658
Score = 28.9 bits (63), Expect = 3.2
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 2 RKRRGGAGEKKKRIEKRNKEEEKEENEQE--EKEKEDVEEEKNKKKKKKKKKKKKKKKKK 59
K +GG G R+++RN EE+E + E + E K+ K++K +K +
Sbjct: 2 SKDQGGYG-FAMRLKRRNWYPGAEESEVKLNESDWEATGLPTKPKELPKRQKSVIEKVET 60
Query: 60 KKKKEEQSVKEIEESLKE 77
+ S + S +
Sbjct: 61 DGDSDIYSSPYLTPSNHQ 78
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 28.7 bits (64), Expect = 3.2
Identities = 11/90 (12%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
R+ + ++K + + E + + +E + + + ++ K K + ++ K+
Sbjct: 857 QRREKEAEKKEKSTTDWDDVVFEVDLLKSQEINLDYILGLIFEHNRQNKGKGEMIEEVKR 916
Query: 61 --------KKKEEQSVKEIEESLKERKEKT 82
+ KE V I+++ +
Sbjct: 917 LIRSSLGNRAKEGLVVDFIQQTNLDDLPDK 946
Score = 28.7 bits (64), Expect = 3.9
Identities = 10/78 (12%), Positives = 22/78 (28%), Gaps = 7/78 (8%)
Query: 11 KKKRIEKRNKEEEKEE-------NEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKK 63
+ + + K E EE + ++ V + + K
Sbjct: 898 FEHNRQNKGKGEMIEEVKRLIRSSLGNRAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFA 957
Query: 64 EEQSVKEIEESLKERKEK 81
+ + +E E +KE
Sbjct: 958 QREQQREAEALIKEENLN 975
>2kgl_A Mesoderm development candidate 2; MESD, LRP5/6, chaperone, YWTD,
WNT; NMR {Mus musculus} PDB: 2kmi_A 2rqk_A 2rqm_A
Length = 195
Score = 28.3 bits (62), Expect = 3.2
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 28 EQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEE 73
Q+ + +E + K K+K K K +K KKKE +
Sbjct: 138 SQDRCAEVTLEGQMYPGKGGGSKEKNKTKPEKAKKKEGDPKPRASK 183
Score = 27.5 bits (60), Expect = 5.5
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 8 AGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
A E K + +++ E Q K +EKNK K + K KKK+ K + KE+
Sbjct: 129 AWEIKDFLVSQDRCAEVTLEGQMYPGKGGGSKEKNKTKPE-KAKKKEGDPKPRASKEDNR 187
Query: 68 VKEIEESL 75
E L
Sbjct: 188 AGSRREDL 195
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle
protein; 2.50A {Gallus gallus}
Length = 101
Score = 27.2 bits (60), Expect = 3.3
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 11 KKK----RIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQ 66
KKK +++K N + E+ E ++K+ ED ++ ++++ +KK K + + +K E
Sbjct: 8 KKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSES- 66
Query: 67 SVKEIEESLKERKEKTLTE 85
VKE +E L E+ EK T+
Sbjct: 67 -VKEAQEKL-EQAEKKATD 83
>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 196
Score = 28.1 bits (62), Expect = 3.3
Identities = 14/62 (22%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 17 KRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE--QSVKEIEES 74
KR E + + ++ K+ + ++ ++ K K+ +K+++++ + KKEE +++ + EE+
Sbjct: 135 KRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEET 194
Query: 75 LK 76
K
Sbjct: 195 KK 196
Score = 28.1 bits (62), Expect = 3.7
Identities = 16/74 (21%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
+ + G K KRI + + K + +++ + E ++K K+ +K+++++ + KK+
Sbjct: 123 LYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKE 182
Query: 61 K-----KKEEQSVK 69
+ KEE++ K
Sbjct: 183 EIIKTLSKEEETKK 196
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent
oligomerization, ATP hydrolysis; 2.2A {Bos taurus}
SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Length = 84
Score = 26.9 bits (59), Expect = 3.3
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 8 AGEKKKRIEKRNKEE--EKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
AG + E+ +E EQ K+ E E + K+ ++ +K+ ++ K+ K+
Sbjct: 18 AGGAFGKREQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKK 76
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein,
NHPX, RNA binding protein; NMR {Homo sapiens} SCOP:
d.79.3.1
Length = 144
Score = 27.6 bits (61), Expect = 3.5
Identities = 10/66 (15%), Positives = 22/66 (33%)
Query: 12 KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
+ EE E + K + + KK ++ K+ +K ++ K +
Sbjct: 3 HHHHHHSSGIEEGRMTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTL 62
Query: 72 EESLKE 77
+ E
Sbjct: 63 NRGISE 68
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 28.7 bits (65), Expect = 3.6
Identities = 10/64 (15%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 21 EEE--KEENEQEEKEK-EDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKE 77
E E K+E + + +E+ + +E E K ++ K + + +++++ ++ + + + ++
Sbjct: 416 EREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRR 475
Query: 78 RKEK 81
E
Sbjct: 476 EIEL 479
Score = 28.7 bits (65), Expect = 4.2
Identities = 15/65 (23%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 15 IEKRNKEEEKEENEQE-----EKEKEDVEEEKNKKKKK-KKKKKKKKKKKKKKKKEEQSV 68
IE+ ++EK+ + QE E E + EE K + + +++++ +K ++ + + ++
Sbjct: 415 IEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVR 474
Query: 69 KEIEE 73
+EIE
Sbjct: 475 REIEL 479
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 28.5 bits (64), Expect = 3.6
Identities = 5/57 (8%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 4 RRGGAGEKKKRIEKRNKEEEKEENEQEE---KEKEDVEEEKNKKKKKKKKKKKKKKK 57
R G+ + + E ++E +V + +++ + + + +
Sbjct: 265 ARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRS 321
Score = 28.5 bits (64), Expect = 4.4
Identities = 6/55 (10%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEE-EKNKKKKKKKKKKKKKKKKKKKKK 63
+ + + E EQE + + N K + + + + + +
Sbjct: 267 QGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRS 321
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal
tail of CHMP4B, ESCRT-III, CHMPS, protein-transport
protein complex, BROX; 3.80A {Homo sapiens}
Length = 104
Score = 27.3 bits (60), Expect = 3.6
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 21 EEEKEENEQEEKEKE--DVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEE 73
E EE EQEE +K ++ + K KKK++E+ +KE+E
Sbjct: 45 MAELEELEQEELDKNLLEISGPETVPLPNVPSIALPSKPAKKKEEEDDDMKELEN 99
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
{Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Length = 181
Score = 27.9 bits (63), Expect = 3.7
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 41 KNKKKKKKKKKKKKKKKKKKKKKEEQ 66
+ K +K+ K+ +KK+K K +
Sbjct: 156 RKKFEKELKELQKKQKHKLEHHHHHH 181
Score = 27.9 bits (63), Expect = 4.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 45 KKKKKKKKKKKKKKKKKKKEEQSVKE 70
K+KK +K+ K+ +KK+K K E
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHH 180
Score = 27.5 bits (62), Expect = 4.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 44 KKKKKKKKKKKKKKKKKKKKEEQS 67
K+KK +K+ K+ +KK+K K E
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHH 178
Score = 27.1 bits (61), Expect = 6.2
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 41 KNKKKKKKKKKKKKKKKKKKKKKEEQ 66
K KK +K+ K+ +KK+K K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHH 180
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4
chimera; alpha-helical coiled coil, disorder, salt
links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB:
1nkn_A 3bat_A
Length = 89
Score = 26.8 bits (59), Expect = 3.8
Identities = 16/76 (21%), Positives = 38/76 (50%)
Query: 18 RNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKE 77
R +EE KE+ +Q +K KED+ + + KK+ +++ ++K + +++ E L
Sbjct: 11 RQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLS 70
Query: 78 RKEKTLTEDSQCDTMI 93
+ E ++ ++
Sbjct: 71 KNYHLENEVARLKKLV 86
Score = 25.7 bits (56), Expect = 9.1
Identities = 16/77 (20%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEE-------EKNK-KKKKKKKKKKKKKKKKKK 61
E++ + + + ++ KE+ + E+ K+++EE +KN K+ + K ++ K
Sbjct: 13 EEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKN 72
Query: 62 KKEEQSVKEIEESLKER 78
E V +++ + ER
Sbjct: 73 YHLENEVARLKKLVGER 89
>3vuu_A Erythrocyte membrane protein, putative; duffy binding-like domain,
erythrocyte binding, merozoite SU malaria, cell
adhesion; 2.09A {Plasmodium falciparum}
Length = 305
Score = 28.3 bits (63), Expect = 4.1
Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 12/84 (14%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKN------------KKKKKKKKKKKKKKK 57
E +K + ++ E V E + K+K + ++ K
Sbjct: 205 ESEKNMNTLKAVCFPKQPRTEANPALTVHENEMCSSTLKKYEEWYNKRKTEWTEQSIKYN 264
Query: 58 KKKKKKEEQSVKEIEESLKERKEK 81
K + E L E+ +
Sbjct: 265 NDKINYTDIKTLSPSEYLIEKCPE 288
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 28.1 bits (62), Expect = 4.1
Identities = 4/32 (12%), Positives = 12/32 (37%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEK 41
++R KE ++ + E ++ +
Sbjct: 227 CGPVGSDERVKEFKQSLIKYMETQRSYTALAE 258
Score = 27.3 bits (60), Expect = 8.3
Identities = 4/33 (12%), Positives = 9/33 (27%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKN 42
E+ + ++ E + E N
Sbjct: 228 GPVGSDERVKEFKQSLIKYMETQRSYTALAEAN 260
>3v2c_Y Ribosome-associated inhibitor A; RAIA, protein Y, stress RES
stationary phase, ribosome hibernation,
ribosome-inhibitor; 2.70A {Escherichia coli k-12} PDB:
3v2e_Y 1n3g_A 1l4s_A 1voq_a 1vos_a 1vov_a 1vox_a 1voz_a
Length = 119
Score = 27.2 bits (61), Expect = 4.1
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 11 KKKRIEKRNKEEEKEENEQEEKEKEDVEEE 40
+ K +R K+ N EE E+E
Sbjct: 89 QHKGEARRAATSVKDANFVEEVEEEHHHHH 118
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 28.5 bits (63), Expect = 4.1
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 37 VEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
++ KK + K++KK K+K+ + E
Sbjct: 111 HLVQREKKLSRTKEEKKAIKEKQDAEAEP 139
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP,
aminoacyl-tRNA synthetase, ATP-binding,
charcot-marie-tooth disease, disease mutation; HET:
B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A*
2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Length = 693
Score = 28.5 bits (63), Expect = 4.2
Identities = 10/50 (20%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 29 QEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKER 78
+++ + DV++ + K +K+ + K+ + K + ++E++LK R
Sbjct: 29 EDKAPQVDVDKAV-AELKARKRVLEAKELALQPKDDIVDRAKMEDTLKRR 77
>3iz5_C 60S ribosomal protein L3 (L3P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_C
Length = 389
Score = 28.2 bits (62), Expect = 4.3
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Query: 35 EDVEEEKNKKKKKKKKKKKKK--KKKKKKKKEEQSVKEIEESLKERKEKTLTEDSQCDTM 92
+ + E+ ++ K K KKK K K + KEI+ L++ K+ T
Sbjct: 108 QHLSEDVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQLQLEKMKKYATIVRVIAHTQ 167
Query: 93 IPVFKKGVLYKGIYCPSLTN 112
I K K N
Sbjct: 168 IRKMKGLKQKKAHLMEIQVN 187
>3vuv_A Erythrocyte membrane protein, putative; duffy binding-like domain,
erythrocyte binding, merozoite SU malaria, cell
adhesion; 2.11A {Plasmodium falciparum}
Length = 339
Score = 28.3 bits (63), Expect = 4.3
Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 12/84 (14%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKN------------KKKKKKKKKKKKKKK 57
E +K + ++ E V E + K+K + ++ K
Sbjct: 239 ESEKNMNTLKAVCFPKQPRTEANPALTVHENEMCSSTLKKYEEWYNKRKTEWTEQSIKYN 298
Query: 58 KKKKKKEEQSVKEIEESLKERKEK 81
K + E L E+ +
Sbjct: 299 NDKINYTDIKTLSPSEYLIEKCPE 322
>2wn4_A ADP-ribosyltransferase enzymatic component; CDTA, ACTIN-ADPRT,
binary toxin; 1.85A {Clostridium difficile} PDB: 2wn5_A
2wn7_A* 2wn8_A 2wn6_A*
Length = 463
Score = 28.4 bits (62), Expect = 4.5
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 12 KKRIEKRNKEEEKEENEQEEK----EKEDVE---EEKNKKKKKKKKKKKKKKKKKKKKKE 64
K EK + E KE E+K EKE +E ++ + K + + + +
Sbjct: 60 LKDKEKAKEWERKEAERIEQKLERSEKEALESYKKDSVEISKYSQTRNYFYDYQIEANSR 119
Query: 65 EQSVKEIEESLKERK 79
E+ KE+ ++ + K
Sbjct: 120 EKEYKELRNAISKNK 134
>2wau_A VAR2CSA, erythrocyte membrane protein 1 (pfemp1); chondroitin
sulphate A, membrane protein DBL, malaria; 3.00A
{Plasmodium falciparum}
Length = 302
Score = 27.9 bits (62), Expect = 4.7
Identities = 15/70 (21%), Positives = 28/70 (40%)
Query: 12 KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
I + KE + ++ + KE E+K + K K + + K+E K
Sbjct: 227 SNFILIKKKEYQSLNSQYDMNYKETKAEKKESPEYFKDKCNGECSCLSEYFKDETRWKNP 286
Query: 72 EESLKERKEK 81
E+L + + K
Sbjct: 287 YETLDDTEVK 296
>2dbn_A Hypothetical protein YBIU; alpha/beta structure, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 1.70A {Escherichia coli} PDB:
2dbi_A 2csg_A*
Length = 461
Score = 28.2 bits (62), Expect = 4.8
Identities = 8/63 (12%), Positives = 20/63 (31%)
Query: 54 KKKKKKKKKKEEQSVKEIEESLKERKEKTLTEDSQCDTMIPVFKKGVLYKGIYCPSLTNS 113
K + + +Q ++ + + R + +Q D + PV + G
Sbjct: 62 KHALRAQLGDVQQIFNQLSDDIATRVAEINALKAQGDAVWPVLSYADIKAGHVTAEQREQ 121
Query: 114 FRE 116
+
Sbjct: 122 IKR 124
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics,
protein initiative; 2.04A {Lactobacillus salivarius}
Length = 177
Score = 27.7 bits (62), Expect = 4.8
Identities = 8/64 (12%), Positives = 19/64 (29%), Gaps = 2/64 (3%)
Query: 2 RKRRGGAGEKKKRIEKRNK--EEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKK 59
G K ++ K ++ E+ + E+ +K + +
Sbjct: 78 MMNTSDKGPKVIKLNLSKKGIDDNIAEDALILYTDKLQVEKGVTLAEKLANRYSHDSYRN 137
Query: 60 KKKK 63
K+ K
Sbjct: 138 KQNK 141
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces
cerevisiae}
Length = 1030
Score = 28.3 bits (63), Expect = 5.0
Identities = 7/57 (12%), Positives = 18/57 (31%), Gaps = 7/57 (12%)
Query: 10 EKKKRIE-KRNKEEEKEENEQEEKEKEDV------EEEKNKKKKKKKKKKKKKKKKK 59
E + K++ K+ E E ++++K + + K+
Sbjct: 966 YANITAEVSLLDHDVKQQYVPISYSKDPSIWDLKQELEDAEEERKLMMAEARAKRTH 1022
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus
norvegicus}
Length = 96
Score = 26.4 bits (58), Expect = 5.0
Identities = 15/66 (22%), Positives = 35/66 (53%)
Query: 15 IEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEES 74
E+ +E ++ E+E +E + EKN+K + +K + + ++ ++E Q +E E
Sbjct: 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEF 65
Query: 75 LKERKE 80
+++ E
Sbjct: 66 KRQQLE 71
>2y8d_A Erythrocyte membrane protein 1; DBL epsilon, pfemp1, malaria; 1.84A
{Plasmodium falciparum}
Length = 306
Score = 27.9 bits (62), Expect = 5.0
Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 17/95 (17%)
Query: 16 EKRNKEEEKEENEQEEKEKEDVEEEKNK------------KKKKKKKKKKKKKKKKKKKK 63
++R K +K +E E + + +K KK + + + K + K
Sbjct: 192 DRRQKLYDKLNSECISAECTNGSVDNSKCTHACVNYKNYILTKKTEYEIQTNKYDNEFKN 251
Query: 64 EEQSVKEIEESLKERKEKTLTEDSQCDTMIPVFKK 98
+ + K+ + LKE+ D++C+ +
Sbjct: 252 KNSNDKDAPDYLKEK-----CNDNKCECLNKHIDD 281
>2lhu_A Mybpc3 protein; cardiac, structural protein; NMR {Mus musculus}
Length = 124
Score = 27.1 bits (59), Expect = 5.0
Identities = 7/58 (12%), Positives = 19/58 (32%)
Query: 24 KEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
+ + + E KK+ ++ K E + +++ E L++
Sbjct: 37 RRTSLAGAGRRTSDSHEDAGTLDFSSLLKKRDSFRRDSKLEAPAEEDVWEILRQAPPS 94
Score = 26.4 bits (57), Expect = 9.0
Identities = 8/62 (12%), Positives = 22/62 (35%)
Query: 17 KRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLK 76
+R + E + + KK+ ++ K + ++ + +++ S
Sbjct: 37 RRTSLAGAGRRTSDSHEDAGTLDFSSLLKKRDSFRRDSKLEAPAEEDVWEILRQAPPSEY 96
Query: 77 ER 78
ER
Sbjct: 97 ER 98
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP:
c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 28.3 bits (62), Expect = 5.1
Identities = 9/64 (14%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 8 AGEKKKRIE---KRNKEEEK---EENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
G+K + + R+ + +EN + + + + EE +K ++ + ++
Sbjct: 440 GGKKSESVVYQGSRSLDSLFDFIKENGHFDVDGKALYEEAQEKAAEEADADAELADEEDA 499
Query: 62 KKEE 65
+E
Sbjct: 500 IHDE 503
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 28.1 bits (62), Expect = 5.3
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKK 59
K ++ +K +E E+EK +++K K K K + K K
Sbjct: 288 RKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAKSK 337
>1nz8_A Transcription antitermination protein NUSG; transcription
elongation, riken structural genomics/proteomics
initiative, RSGI; NMR {Thermus thermophilus} SCOP:
d.58.42.1
Length = 119
Score = 26.8 bits (60), Expect = 5.3
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Query: 10 EKK------KRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKK 52
E+K KRI+ +++ + E+V E + KK+ +KK
Sbjct: 14 EEKAKANLEKRIKAFGLQDKIFQVLIPT---EEVVELREGGKKEVVRKK 59
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein
transport, HIV-1; 1.80A {Homo sapiens}
Length = 79
Score = 26.0 bits (57), Expect = 5.3
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 12 KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
++ I++ EE +QE EK+ +E KK K K+ + K+KK+ E+ + +I
Sbjct: 5 QEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHGTKNKRAALQALKRKKRYEKQLAQI 64
Query: 72 EESL 75
+ +L
Sbjct: 65 DGTL 68
>2lta_A De novo designed protein; structural genomics, northeast structural
genomics consortiu PSI-biology, protein structure
initiative; NMR {Artificial gene}
Length = 110
Score = 26.6 bits (58), Expect = 5.4
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 12 KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
K + EKR EE+ ++ + + E V+++ + K K KK++ + + +K +E K+I
Sbjct: 35 KDKDEKR-LEEKIQKLKSQGFEVRKVKDDDDIDKWIDKIKKERPQLEVRKVTDEDQAKQI 93
Query: 72 EESLKER 78
E LK++
Sbjct: 94 LEDLKKK 100
>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein
degradation, NUCL excision repair, peptide:N-glycanase;
1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A*
Length = 295
Score = 27.7 bits (61), Expect = 5.4
Identities = 4/41 (9%), Positives = 14/41 (34%)
Query: 2 RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKN 42
+++ + ++K + +R E E + +
Sbjct: 254 QRQLSLSESRRKELLQRIIVELVEFISPKTPRPGLEHHHHH 294
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase,
rossmann fold, LEFT-handed-beta-helix, cell shape; HET:
COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB:
3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Length = 501
Score = 27.9 bits (63), Expect = 5.4
Identities = 2/32 (6%), Positives = 12/32 (37%)
Query: 43 KKKKKKKKKKKKKKKKKKKKKEEQSVKEIEES 74
++K+ + K+ + ++ + +
Sbjct: 468 QRKRPGSPAAQASKRASEMACQQPTQPPDADQ 499
Score = 27.9 bits (63), Expect = 5.8
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 9/45 (20%)
Query: 35 EDVEEE---------KNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
EDV +N + ++K+ + K+ E + ++
Sbjct: 446 EDVPPGALAVSAGPQRNIENWVQRKRPGSPAAQASKRASEMACQQ 490
>4a1a_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1c_O 4a1e_O
Length = 185
Score = 27.3 bits (60), Expect = 5.4
Identities = 10/60 (16%), Positives = 19/60 (31%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
G K K + K + + +K E + K + K+ +K + K
Sbjct: 123 FYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQQEARRAKNTASRAKRNEKAQIVAK 182
>1xfx_A Calmodulin-sensitive adenylate cyclase; protein-protein
interaction, lyase/metal binding protein complex; 3.20A
{Bacillus anthracis} PDB: 1xfw_A* 1xfv_A 1xfy_A 1xfz_A
1y0v_A 1xfu_A
Length = 777
Score = 28.0 bits (61), Expect = 5.5
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 38 EEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTLTED 86
E K+ K +K K +K+K K ++ + E + + + T+D
Sbjct: 13 EHYTESDIKRNHKTEKNKTEKEKFKDSINNLVKTEFTNETLDKIQQTQD 61
Score = 27.6 bits (60), Expect = 7.2
Identities = 10/48 (20%), Positives = 20/48 (41%)
Query: 44 KKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTLTEDSQCDT 91
+ + K+ K +K K E++ K+ +L + + T D T
Sbjct: 12 NEHYTESDIKRNHKTEKNKTEKEKFKDSINNLVKTEFTNETLDKIQQT 59
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 27.2 bits (60), Expect = 5.5
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 21/90 (23%)
Query: 13 KRIEKRN---------------------KEEEKEENEQEEKEKEDVEEEKNKKKKKKKKK 51
+R E+R K E + + +KE + EE K K K+ +
Sbjct: 31 ERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAE 90
Query: 52 KKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
+ + ++ K E+S+ ++E+ L +K K
Sbjct: 91 TRAEFAERSVTKLEKSIDDLEDELYAQKLK 120
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C
3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C
3azj_C 3azk_C 3azl_C 3azm_C ...
Length = 129
Score = 27.1 bits (59), Expect = 5.8
Identities = 6/35 (17%), Positives = 15/35 (42%)
Query: 44 KKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKER 78
+ K+ K + K K + + + V + L++
Sbjct: 4 RGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKG 38
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 28.2 bits (62), Expect = 5.8
Identities = 12/59 (20%), Positives = 30/59 (50%)
Query: 7 GAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
GA ++++ + +E++ DV EE+ +K+K +K+ K+ + +++E
Sbjct: 573 GAQPSTSTAQEQDDVLIVDSDEEDSSNNADVSEEERSRKRKLDEKENLSAKRSRIEQKE 631
>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin,
immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB:
1qfw_L* 1qnz_L 3iy3_A 3iy4_A
Length = 111
Score = 26.7 bits (60), Expect = 6.0
Identities = 3/15 (20%), Positives = 7/15 (46%)
Query: 239 SQGIGLNNKEYLIWY 253
+ + + +L WY
Sbjct: 26 GESVDIFGVGFLHWY 40
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 6.0
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 50 KKKKKKKKKKKKKKEEQSVKEIEESL 75
K +K + ++ S++E+E L
Sbjct: 1870 NFIKLQKIDIIELQKSLSLEEVEGHL 1895
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_Q 4a1c_Q 4a1e_Q
Length = 183
Score = 27.2 bits (60), Expect = 6.0
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 37 VEEEKNKKKKKKKKKKKKKKKKKKKKK 63
+E K +K+ K KK K KK K
Sbjct: 152 AQEVAAKVRKEAPKDAAKKVPKTKKGK 178
Score = 27.2 bits (60), Expect = 6.1
Identities = 12/56 (21%), Positives = 19/56 (33%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKK 56
R+R A + E E K +++ ++ KK K KK K
Sbjct: 127 GRRRTYRAHGRINPYLNSGCHVEIFAQEVAAKVRKEAPKDAAKKVPKTKKGKLAIG 182
Score = 27.2 bits (60), Expect = 6.2
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 32 KEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
+E ++ K KK K KK K
Sbjct: 153 QEVAAKVRKEAPKDAAKKVPKTKKGKLAIG 182
Score = 26.8 bits (59), Expect = 8.3
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 38 EEEKNKKKKKKKKKKKKKKKKKKKKK 63
E +K+ K KK K KK K
Sbjct: 154 EVAAKVRKEAPKDAAKKVPKTKKGKL 179
Score = 26.8 bits (59), Expect = 8.6
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 35 EDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
++V + K+ K KK K KK K
Sbjct: 153 QEVAAKVRKEAPKDAAKKVPKTKKGKLA 180
Score = 26.8 bits (59), Expect = 10.0
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 30 EEKEKEDVEEEKNKKKKKKKKKKKKKKKKK 59
+E + +E KK K KK K
Sbjct: 153 QEVAAKVRKEAPKDAAKKVPKTKKGKLAIG 182
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 27.4 bits (60), Expect = 6.0
Identities = 7/49 (14%), Positives = 21/49 (42%)
Query: 18 RNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQ 66
E E E EKE + + K + + +++ ++++++ +
Sbjct: 140 NQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQELAVRERQQEVTR 188
Score = 27.4 bits (60), Expect = 6.3
Identities = 11/68 (16%), Positives = 31/68 (45%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
E+ KR + E+ ++ Q + +E E ++K+ ++ K + + ++E +
Sbjct: 122 ERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQELAVRE 181
Query: 70 EIEESLKE 77
+E ++
Sbjct: 182 RQQEVTRK 189
Score = 26.6 bits (58), Expect = 9.3
Identities = 12/90 (13%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEK-----EKEDVEEEKNKKKKKKKKKKKKK 55
R + + + +E+ N + E+ + ++ + E+N + + +K+
Sbjct: 100 TRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESL 159
Query: 56 KKKKKKKKEEQSVKEIEESLKERKEKTLTE 85
++ K+E E +++ER+++ +
Sbjct: 160 LVSVQRLKDEARDLRQELAVRERQQEVTRK 189
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A
{Homo sapiens} SCOP: a.7.5.1
Length = 108
Score = 26.3 bits (58), Expect = 6.2
Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 13 KRIEKRNKEEEKEENEQE---EKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
+R+ K EKE +QE EK + + E + KK+ + ++ + +++ E +
Sbjct: 17 RRLVKERVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIPDCQRRLEAAYL 76
Query: 70 EIEESLKERKEKTLTED 86
+++ L+ K+ E+
Sbjct: 77 DLQRILENEKDLEEAEE 93
>2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein
initiative, MCSG, structural genomics, midwest center
for S genomics; HET: MSE; 2.01A {Streptococcus
pneumoniae}
Length = 216
Score = 27.5 bits (61), Expect = 6.6
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Query: 7 GAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQ 66
G G ++R+ + NE ++ D+ + K K ++ E
Sbjct: 143 GGGYPRERVIPEQRNARIL-NEVKQITHNDLMTILKIIDQDFLKDTISGKYFQEYFFENC 201
Query: 67 SVKEIEESLKE 77
E+ LKE
Sbjct: 202 QDDEVAAYLKE 212
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 27.6 bits (62), Expect = 7.0
Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 17 KRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESL 75
+ +E+ K ++ +E+VE+E+ + +KK + + K+K ++ ++ E+E L
Sbjct: 9 GKLREKLKS---FVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKDVDK-ALDELEIDL 63
>2cu2_A Putative mannose-1-phosphate guanylyl transferase;
mannose-1-phosphate geranyltransferase, thermus
thermophilus structural genomics; 2.20A {Thermus
thermophilus} SCOP: b.81.4.1 c.68.1.20
Length = 337
Score = 27.5 bits (62), Expect = 7.0
Identities = 4/19 (21%), Positives = 11/19 (57%)
Query: 61 KKKEEQSVKEIEESLKERK 79
K + V+E+ + L+ ++
Sbjct: 319 PKDWAREVREVVKRLEAQE 337
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G
3o58_F 3o5h_F 3u5e_E 3u5i_E
Length = 176
Score = 26.9 bits (59), Expect = 7.2
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 32 KEKEDVEEEKNKKKKKKKK-----KKKKKKKKKKKKKEEQSVKEIEESLKERKEKT 82
++ K K KK+KK +++ K+ K ++ E+Q K ++++L +KT
Sbjct: 99 EKFNVEYFAKEKLTKKEKKEANLFPEQQNKEIKAERVEDQ--KVVDKALIAEIKKT 152
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection,
cytoplasm, cytoskeleton, membrane, phosphoprotein,
structural protein; NMR {Mus musculus}
Length = 128
Score = 26.6 bits (58), Expect = 7.2
Identities = 14/65 (21%), Positives = 31/65 (47%)
Query: 34 KEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTLTEDSQCDTMI 93
+E +EE+K++ +K K + +KK +K +Q + +E +TL E +
Sbjct: 57 RELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHTDDELNWLDHGRTLREQGVEEHET 116
Query: 94 PVFKK 98
+ ++
Sbjct: 117 LLLRR 121
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane
protein-exocytosis transport protein complex, membrane
protein-exocytosis COMP; 3.50A {Homo sapiens} PDB:
3rl0_g
Length = 63
Score = 25.3 bits (54), Expect = 7.4
Identities = 13/62 (20%), Positives = 32/62 (51%)
Query: 6 GGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
G G K K+ +E ++ + EE+ K + + +++ ++ + K KKK+++E
Sbjct: 1 GPLGSKLPDAAKKFEEAQEALRQAEEERKAKYAKMEAEREAVRQGIRDKYGIKKKEEREA 60
Query: 66 QS 67
++
Sbjct: 61 EA 62
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural
genomics, structural genomics consort ATP-binding,
hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo
sapiens}
Length = 262
Score = 27.3 bits (61), Expect = 7.5
Identities = 9/70 (12%), Positives = 20/70 (28%)
Query: 16 EKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESL 75
E EK D +E++++ + + +++
Sbjct: 10 GVDLGTENLYFQSMNNVEKPDNDEDESEVPSLPLGLTGAFEDTSFASLCNLVNENTLKAI 69
Query: 76 KERKEKTLTE 85
KE +TE
Sbjct: 70 KEMGFTNMTE 79
>1v3y_A Peptide deformylase; protein synthesis, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP:
d.167.1.1
Length = 192
Score = 27.2 bits (61), Expect = 7.6
Identities = 4/30 (13%), Positives = 15/30 (50%)
Query: 45 KKKKKKKKKKKKKKKKKKKEEQSVKEIEES 74
K++ + + + + +K+ +KE+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQG 192
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 27.5 bits (62), Expect = 7.6
Identities = 10/61 (16%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 25 EENEQEEKEKEDVEEEKNKKKKK--------KKKKKKKKKKKKKKKKEEQSVKEIEESLK 76
E ++EK +++ + ++K K K+ + ++ + K+ + + I E+L
Sbjct: 800 EWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREALS 859
Query: 77 E 77
+
Sbjct: 860 Q 860
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase,
methylysine binding, STR genomics consortium, SGC,
alternative promoter usage; HET: DNA BTB; 2.30A {Homo
sapiens}
Length = 154
Score = 26.7 bits (58), Expect = 7.8
Identities = 5/41 (12%), Positives = 12/41 (29%)
Query: 50 KKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTLTEDSQCD 90
+ K+ +++ E+ + R K D
Sbjct: 78 CSAFHQATYNKQPMYRKAIYEVLQVASSRAGKLFPVCHDSD 118
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein,
nucleotide-binding, PR biosynthesis, translation,
zinc-finger, 70S ribosome, ribos translocon; 7.10A
{Escherichia coli 536} PDB: 2akh_Y 2aki_Y
Length = 435
Score = 27.5 bits (62), Expect = 7.9
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 21/64 (32%)
Query: 199 AAVGTWILLNTQGWWRCFANNYLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIV 258
A + +W T W + YLQ G + Y++ Y I+
Sbjct: 281 ATIASWFGGGTGWNWLTTISLYLQP---GQPL------------------YVLLYASAII 319
Query: 259 FVTY 262
F +
Sbjct: 320 FFCF 323
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel,
RNA-binding protein, gene regulation; NMR {Homo
sapiens} SCOP: b.40.4.5
Length = 143
Score = 26.5 bits (58), Expect = 7.9
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 41 KNKKKKKKKKKKKKKKKKKKKKK 63
KNK K K +++ K + + +K++
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRE 24
>3rrc_A Duffy receptor; duffy binding like, receptor recognition, duffy
antigen RECE chemokines, cell invasion; HET: EDO; 1.95A
{Plasmodium vivax} PDB: 2c6j_A
Length = 317
Score = 27.2 bits (60), Expect = 8.5
Identities = 9/78 (11%), Positives = 21/78 (26%), Gaps = 5/78 (6%)
Query: 12 KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
+ I ++ + + K EK + K++ + E EI
Sbjct: 232 DQWITRKKNQWDV----LSNKFISVKNAEK-VQTAGIVTPYDILKQELDEFNEVAFENEI 286
Query: 72 EESLKERKEKTLTEDSQC 89
+ E + +
Sbjct: 287 NKRDGAYIELCVCSVEEA 304
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A
{Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B
2qna_B
Length = 365
Score = 27.5 bits (60), Expect = 8.6
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 9/66 (13%)
Query: 3 KRRGGAGEKKKRIEK---------RNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKK 53
K + + E+ +R + + +++ + EEE K ++
Sbjct: 37 KSKYSSLEQSERRRRLLELQKSKRLDYVNHARRLAEDDWTGMESEEENKKDDEEMDIDTV 96
Query: 54 KKKKKK 59
KK K
Sbjct: 97 KKLPKH 102
>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T
3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 1s1i_P
Length = 189
Score = 27.0 bits (59), Expect = 8.6
Identities = 4/41 (9%), Positives = 22/41 (53%)
Query: 25 EENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
+ + + + ++ + EE ++ K + + ++ ++ +K++
Sbjct: 143 IQAKADAQREKALNEEAEARRLKNRAARDRRAQRVAEKRDA 183
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop,
OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Length = 396
Score = 27.4 bits (62), Expect = 8.6
Identities = 7/48 (14%), Positives = 16/48 (33%), Gaps = 5/48 (10%)
Query: 44 KKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKE-----RKEKTLTED 86
K +K + KK K E + +++ + + R +
Sbjct: 162 PIIDKLEKVAVRGGDKKLKPEYDIMCKVKSWVIDQKKPVRFYHDWNDK 209
>3hny_M Coagulation factor VIII; blood clotting, acute phase, blood
coagulation, calcium, DIS mutation, disulfide bond,
glycoprotein, hemophilia; 1.07A {Homo sapiens} PDB:
3hnb_M 3hob_M 1d7p_M 1iqd_C 1cfg_A 1fac_A
Length = 159
Score = 26.8 bits (59), Expect = 8.7
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 13/100 (13%)
Query: 207 LNTQGW---WRCFANNYLQWAAVGTWILLNTQGFISQG-IGLNNKEYLIWYILF-----I 257
L+ QG WR NN +W V + G +QG L Y+ +++
Sbjct: 41 LHLQGRSNAWRPQVNNPKEWLQVDFQKTMKVTGVTTQGVKSLLTSMYVKEFLISSSQDGH 100
Query: 258 VFVTYAMLPLPLKWCFIGGCTTSVLHVI---ITAQ-IKLH 293
+ + + T V++ + + + +++H
Sbjct: 101 QWTLFFQNGKVKVFQGNQDSFTPVVNSLDPPLLTRYLRIH 140
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR
SRT; 1.60A {Pseudomonas syringae PV}
Length = 219
Score = 27.0 bits (60), Expect = 8.7
Identities = 6/52 (11%), Positives = 17/52 (32%)
Query: 30 EEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
+ K +E ++ ++ + + E ++K + K K
Sbjct: 58 QGKPLALKQERIDQILREHDAAIAQAETAGTDAPTEAALKAERTFMAGEKAK 109
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of
chromatin subfamily...; structural DNA-binding protein
BRAF35, DNA-bending; NMR {Mus musculus}
Length = 92
Score = 25.8 bits (57), Expect = 8.8
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 21 EEEKEENEQE-EKEKEDVEEEKNKKKKKKKKKKKKKKKKK 59
EK+ E EKEK+ +E ++ + K +
Sbjct: 51 PAEKQRYLDEAEKEKQQYLKELWAYQQSEAYKVCTESGPS 90
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_M
Length = 178
Score = 26.7 bits (59), Expect = 8.8
Identities = 0/27 (0%), Positives = 0/27 (0%)
Query: 39 EEKNKKKKKKKKKKKKKKKKKKKKKEE 65
Sbjct: 151 AAAAAAAAAAAAAAAAAAAAAAAAAAA 177
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease,
SH3-binding, thiol protease, UBL conjugation pathway,
structural genomics; 2.10A {Homo sapiens} SCOP:
a.118.23.1
Length = 144
Score = 26.7 bits (58), Expect = 9.1
Identities = 6/35 (17%), Positives = 20/35 (57%)
Query: 12 KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKK 46
+ ++ R +E E + +E+ +E+ + + K+++
Sbjct: 108 SESLKLRYEEAEVRKKLEEKDRQEEAQRLQQKRQE 142
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831,
putative branched-chain amino acid aminotransferase;
HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Length = 285
Score = 27.1 bits (61), Expect = 9.3
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 9/29 (31%)
Query: 230 ILLNTQGFISQGIGLNNKEYLIWYILFIV 258
ILL G + +G N +F+V
Sbjct: 166 ILLGLNGQVCEGSFSN---------VFLV 185
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics,
stress response protein, chaperone, structural GE
consortium, SGC; 2.50A {Leishmania major}
Length = 444
Score = 27.3 bits (61), Expect = 9.5
Identities = 12/48 (25%), Positives = 28/48 (58%), Gaps = 8/48 (16%)
Query: 34 KEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
KE V E+++++K++++ ++K E+ K ++E L ++ EK
Sbjct: 272 KEGVHFEESEEEKQQRE--------EEKAACEKLCKTMKEVLGDKVEK 311
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 26.7 bits (59), Expect = 9.6
Identities = 9/50 (18%), Positives = 16/50 (32%)
Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKK 59
K + N + K KE +++K K ++KK
Sbjct: 146 YKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGPLYEEKKN 195
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.400
Gapped
Lambda K H
0.267 0.0364 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,281,649
Number of extensions: 311776
Number of successful extensions: 6736
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4622
Number of HSP's successfully gapped: 1045
Length of query: 362
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 267
Effective length of database: 4,049,298
Effective search space: 1081162566
Effective search space used: 1081162566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (27.1 bits)