BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17569
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CS4|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|A Chain A, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|A Chain A, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|A Chain A, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 225
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 96 LSGFTFTATNMSASCLQIS---------KDLQENHCLRIKLLGDCYYCVSGLPKPRADHA 146
+ GFT A+ +A L ++ K ENHCLRIK+LGDCYYCVSGLP+ RADHA
Sbjct: 42 IEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEARADHA 101
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/26 (80%), Positives = 23/26 (88%)
Query: 155 ENHCLRIKLLGDCYYCVSGLPKTEWD 180
ENHCLRIK+LGDCYYCVSGLP+ D
Sbjct: 74 ENHCLRIKILGDCYYCVSGLPEARAD 99
>pdb|1CJK|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CUL|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
pdb|1TL7|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 217
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 96 LSGFTFTATNMSASCLQIS---------KDLQENHCLRIKLLGDCYYCVSGLPKPRADHA 146
+ GFT A+ +A L ++ K ENHCLRIK+LGDCYYCVSGLP+ RADHA
Sbjct: 34 IEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEARADHA 93
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/26 (80%), Positives = 23/26 (88%)
Query: 155 ENHCLRIKLLGDCYYCVSGLPKTEWD 180
ENHCLRIK+LGDCYYCVSGLP+ D
Sbjct: 66 ENHCLRIKILGDCYYCVSGLPEARAD 91
>pdb|1AZS|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
Length = 220
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 96 LSGFTFTATNMSASCLQIS---------KDLQENHCLRIKLLGDCYYCVSGLPKPRADHA 146
+ GFT A+ +A L ++ K ENHCLRIK+LGDCYYCVSGLP+ RADHA
Sbjct: 42 IEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEARADHA 101
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/26 (80%), Positives = 23/26 (88%)
Query: 155 ENHCLRIKLLGDCYYCVSGLPKTEWD 180
ENHCLRIK+LGDCYYCVSGLP+ D
Sbjct: 74 ENHCLRIKILGDCYYCVSGLPEARAD 99
>pdb|1YK9|A Chain A, Crystal Structure Of A Mutant Form Of The Mycobacterial
Adenylyl Cyclase Rv1625c
Length = 204
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 116 DLQENHCL-RIKLLGDCYYCVSGLPKPRADHATLL 149
+L + H L +I++ GD Y VSG+P+PR DH L
Sbjct: 46 ELVDQHGLEKIEVSGDSYMVVSGVPRPRPDHTQAL 80
>pdb|4DUR|A Chain A, The X-Ray Crystal Structure Of Full-Length Type Ii Human
Plasminogen
pdb|4DUR|B Chain B, The X-Ray Crystal Structure Of Full-Length Type Ii Human
Plasminogen
pdb|4DUU|A Chain A, The X-Ray Crystal Structure Of Full-Length Type I Human
Plasminogen
pdb|4A5T|S Chain S, Structural Basis For The Conformational Modulation
Length = 791
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 114 SKDLQENHCLRIKLLGDCYYCVSGLPKPRADHATLLNYKKKENHCLRIKLLGDCYYCVSG 173
S+ L+EN+C +C + P+ R D+ +L +++ HC G +SG
Sbjct: 125 SEGLEENYCRNPDNDPQGPWCYTTDPEKRYDYCDILECEEECMHCSGENYDGKISKTMSG 184
Query: 174 LPKTEWDREKKTDCTDGHPAGYEP 197
L WD + H GY P
Sbjct: 185 LECQAWDSQSP------HAHGYIP 202
>pdb|2WZ1|A Chain A, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3.
pdb|2WZ1|B Chain B, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3
Length = 219
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 124 RIKLLGDCYYCVSGLPKPRADHA 146
+++ +GD Y VSGLP+P HA
Sbjct: 64 KVETVGDKYMTVSGLPEPCIHHA 86
>pdb|2DOH|X Chain X, The X-Ray Crystallographic Structure Of The Angiogenesis
Inhibitor, Angiostatin, Bound A To A Peptide From The
Group A Streptococcal Surface Protein Pam
pdb|2DOI|X Chain X, The X-Ray Crystallographic Structure Of The Angiogenesis
Inhibitor, Angiostatin, Bound To A Peptide From The
Group A Streptococcus Protein Pam
pdb|2DOI|A Chain A, The X-Ray Crystallographic Structure Of The Angiogenesis
Inhibitor, Angiostatin, Bound To A Peptide From The
Group A Streptococcus Protein Pam
Length = 234
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 31/69 (44%)
Query: 114 SKDLQENHCLRIKLLGDCYYCVSGLPKPRADHATLLNYKKKENHCLRIKLLGDCYYCVSG 173
S+ L+EN+C +C + P+ R D+ +L +++ HC G +SG
Sbjct: 45 SEGLEENYCRNPDNDPQGPWCYTTDPEKRYDYCDILECEEECMHCSGENYDGKISKTMSG 104
Query: 174 LPKTEWDRE 182
L WD +
Sbjct: 105 LECQAWDSQ 113
>pdb|1KI0|A Chain A, The X-Ray Structure Of Human Angiostatin
Length = 253
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 114 SKDLQENHCLRIKLLGDCYYCVSGLPKPRADHATLLNYKKKENHCLRIKLLGDCYYCVSG 173
S+ L+EN+C +C + P+ R D+ +L +++ HC G +SG
Sbjct: 45 SEGLEENYCRNPDNDPQGPWCYTTDPEKRYDYCDILECEEECMHCSGENYDGKISKTMSG 104
Query: 174 LPKTEWDREKKTDCTDGHPAGYEP 197
L WD + H GY P
Sbjct: 105 LECQAWDSQSP------HAHGYIP 122
>pdb|4B63|A Chain A, A. Fumigatus Ornithine Hydroxylase (Sida) Bound To Nadp
And Ornithine
pdb|4B64|A Chain A, A. Fumigatus Ornithine Hydroxylase (Sida) Bound To Nadp
And Lysine
pdb|4B65|A Chain A, A. Fumigatus Ornithine Hydroxylase (Sida), Reduced State
Bound To Nadp(H)
pdb|4B66|A Chain A, A. Fumigatus Ornithine Hydroxylase (Sida), Reduced State
Bound To Nadp And Arg
pdb|4B67|A Chain A, A. Fumigatus Ornithine Hydroxylase (Sida), Re-Oxidised
State Bound To Nadp And Ornithine
pdb|4B68|A Chain A, A. Fumigatus Ornithine Hydroxylase (Sida), Re-Oxidised
State Bound To Nadp And Arg
pdb|4B69|A Chain A, A. Fumigatus Ornithine Hydroxylase (Sida) Bound To
Ornithine
Length = 501
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 7 SHRQRQKSLIIVPGQSRISGGVPASRSVFHFGAFCPEFP 45
S R+ +K +I + G +++ G+P + H +C P
Sbjct: 199 SARRTRKVVIAIGGTAKMPSGLPQDPRIIHSSKYCTTLP 237
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,079,897
Number of Sequences: 62578
Number of extensions: 234937
Number of successful extensions: 380
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 369
Number of HSP's gapped (non-prelim): 14
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)