RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17569
(197 letters)
>gnl|CDD|201086 pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic
domain.
Length = 184
Score = 46.5 bits (111), Expect = 1e-06
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 119 ENHCLRIKLLGDCYYCVSGLPKPRADHA 146
++ ++K +GD Y SGLP+P HA
Sbjct: 48 KHGVYKVKTIGDAYMAASGLPEPSPAHA 75
Score = 38.8 bits (91), Expect = 5e-04
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 155 ENHCLRIKLLGDCYYCVSGLPKTEWD 180
++ ++K +GD Y SGLP+
Sbjct: 48 KHGVYKVKTIGDAYMAASGLPEPSPA 73
>gnl|CDD|143636 cd07302, CHD, cyclase homology domain. Catalytic domains of the
mononucleotidyl cyclases (MNC's), also called cyclase
homology domains (CHDs), are part of the class III
nucleotidyl cyclases. This class includes eukaryotic and
prokaryotic adenylate cyclases (AC's) and guanylate
cyclases (GC's). They seem to share a common catalytic
mechanism in their requirement for two magnesium ions to
bind the polyphosphate moiety of the nucleotide.
Length = 177
Score = 39.1 bits (92), Expect = 5e-04
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 117 LQENHCLRIKLLGDCYYCVSGLPKPRADHA 146
++ + K +GD V GLP DHA
Sbjct: 39 IERHGGTVDKTIGDAVMAVFGLPGAHEDHA 68
Score = 29.5 bits (67), Expect = 0.87
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 155 ENHCLRIKLLGDCYYCVSGLP 175
+ K +GD V GLP
Sbjct: 41 RHGGTVDKTIGDAVMAVFGLP 61
>gnl|CDD|143637 cd07556, Nucleotidyl_cyc_III, Class III nucleotidyl cyclases.
Class III nucleotidyl cyclases are the largest, most
diverse group of nucleotidyl cyclases (NC's) containing
prokaryotic and eukaryotic proteins. They can be divided
into two major groups; the mononucleotidyl cyclases
(MNC's) and the diguanylate cyclases (DGC's). The
MNC's, which include the adenylate cyclases (AC's) and
the guanylate cyclases (GC's), have a conserved cyclase
homology domain (CHD), while the DGC's have a conserved
GGDEF domain, named after a conserved motif within this
subgroup. Their products, cyclic guanylyl and adenylyl
nucleotides, are second messengers that play important
roles in eukaryotic signal transduction and prokaryotic
sensory pathways.
Length = 133
Score = 35.8 bits (83), Expect = 0.004
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 117 LQENHCLRIKLLGDCYYCVSGLPKPRA 143
++ + L+IK +GD + VSGL P A
Sbjct: 39 IRRSGDLKIKTIGDEFMVVSGLDHPAA 65
Score = 31.9 bits (73), Expect = 0.084
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 155 ENHCLRIKLLGDCYYCVSGL 174
+ L+IK +GD + VSGL
Sbjct: 41 RSGDLKIKTIGDEFMVVSGL 60
>gnl|CDD|214485 smart00044, CYCc, Adenylyl- / guanylyl cyclase, catalytic domain.
Present in two copies in mammalian adenylyl cyclases.
Eubacterial homologues are known. Two residues (Asn,
Arg) are thought to be involved in catalysis. These
cyclases have important roles in a diverse range of
cellular processes.
Length = 194
Score = 35.7 bits (83), Expect = 0.007
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 18/67 (26%)
Query: 96 LSGFTFTATNMSASC--LQISKDLQE-----------NHCLRIKLLGDCYYCVSGLPKPR 142
+ GFT ++ ++ Q+ L + + ++K +GD Y SGLP+
Sbjct: 44 IVGFT----SLCSTSTPEQVVNLLNDLYSRFDQIIDRHGGYKVKTIGDAYMVASGLPEEA 99
Query: 143 -ADHATL 148
DHA L
Sbjct: 100 LVDHAEL 106
Score = 30.3 bits (69), Expect = 0.39
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 154 KENHCLRIKLLGDCYYCVSGLP 175
+ ++K +GD Y SGLP
Sbjct: 75 DRHGGYKVKTIGDAYMVASGLP 96
>gnl|CDD|224946 COG2035, COG2035, Predicted membrane protein [Function unknown].
Length = 276
Score = 30.7 bits (70), Expect = 0.40
Identities = 16/59 (27%), Positives = 19/59 (32%), Gaps = 18/59 (30%)
Query: 17 IVPGQSRISGGVPAS------------RSVFHFGAFCPEFPFFCPVGINSAGMYTKYLT 63
IVPG +SGG A +F F F P+GI GM
Sbjct: 19 IVPG---VSGGTIALILGIYERLIEAIAGIFKLDEFKRNVLFLIPLGI---GMLLGIFL 71
>gnl|CDD|222897 PHA02593, 62, clamp loader small subunit; Provisional.
Length = 191
Score = 30.5 bits (69), Expect = 0.42
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 6/54 (11%)
Query: 50 VGINSAGMYTKYLTDRGQRRAFLETHRS------TETRMKTQKENDQQEKLLLS 97
V + A Y L +G+ L+ + + K KE Q +KL
Sbjct: 137 VNTDDAREYLDILKKKGKLPDVLKRLKGLVTDEFLKGVTKNVKEQKQLKKLAKE 190
>gnl|CDD|227608 COG5283, COG5283, Phage-related tail protein [Function unknown].
Length = 1213
Score = 29.5 bits (66), Expect = 1.1
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 68 RRAFLETHR----STETRMKTQKENDQQEKLLLSGFTFTATNMSASCLQISKDL 117
+ T + T + Q++ Q L + T MS S Q+ K L
Sbjct: 179 NKQLERTKKVADALTYVLDEAQQKLSQALSARLERLQESRTQMSQSSGQLGKRL 232
>gnl|CDD|184349 PRK13824, PRK13824, replication initiation protein RepC;
Provisional.
Length = 404
Score = 28.7 bits (65), Expect = 2.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 52 INSAGMYTKYLTDRGQRRAF 71
INSAG Y + LT R +R F
Sbjct: 364 INSAGGYLRDLTRRAERGEF 383
>gnl|CDD|221230 pfam11800, RP-C_C, Replication protein C C-terminal region.
Replication protein C is involved in the early stages of
viral DNA replication.
Length = 208
Score = 26.8 bits (60), Expect = 6.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 52 INSAGMYTKYLTDRGQRRAF 71
INS G Y + LT+R R F
Sbjct: 173 INSPGGYLRDLTERAARGEF 192
>gnl|CDD|143187 cd04986, IgC_CH2, CH2 domain (second constant Ig domain of the
heavy chain) in immunoglobulin. IgC_CH2: The second
immunoglobulin constant domain (IgC), of immunoglobulin
(Ig) heavy chains. This domain is found on the Fc
fragment. The basic structure of Ig molecules is a
tetramer of two light chains and two heavy chains linked
by disulfide bonds. There are two types of light chains:
kappa and lambda; each composed of a constant domain and
a variable domain. There are five types of heavy chains:
alpha, delta, epsilon, gamma and mu, all consisting of a
variable domain (VH) and three (in alpha, delta and
gamma) or four (in epsilon and mu) constant domains (CH1
to CH4). Ig molecules are modular proteins, in which the
variable and constant domains have clear, conserved
sequence patterns.
Length = 99
Score = 26.1 bits (57), Expect = 6.4
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 167 CYYCVSGLP--KTEWDREKKTDCTDGHPAG 194
CY S LP EW++ + CT HP G
Sbjct: 61 CYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.136 0.430
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,497,872
Number of extensions: 810852
Number of successful extensions: 529
Number of sequences better than 10.0: 1
Number of HSP's gapped: 529
Number of HSP's successfully gapped: 16
Length of query: 197
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 105
Effective length of database: 6,857,034
Effective search space: 719988570
Effective search space used: 719988570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)