RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17569
(197 letters)
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A*
1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A*
3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A*
1tl7_A*
Length = 220
Score = 65.0 bits (159), Expect = 3e-13
Identities = 32/58 (55%), Positives = 37/58 (63%), Gaps = 9/58 (15%)
Query: 98 GFTFTATNMSASCL-QISKDL--------QENHCLRIKLLGDCYYCVSGLPKPRADHA 146
GFT A+ +A L +L ENHCLRIK+LGDCYYCVSGLP+ RADHA
Sbjct: 44 GFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEARADHA 101
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics,
PSI, protein structure initiative; 2.70A {Mycobacterium
tuberculosis}
Length = 204
Score = 51.1 bits (123), Expect = 2e-08
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 13/60 (21%)
Query: 98 GFTFTATNMSASCLQISKDL-----------QENHCLRIKLLGDCYYCVSGLPKPRADHA 146
GFT A++ + + + L ++ +I++ GD Y VSG+P+PR DH
Sbjct: 20 GFTERASSTAP--ADLVRFLDRLYSAFDELVDQHGLEKIEVSGDSYMVVSGVPRPRPDHT 77
Score = 36.8 bits (86), Expect = 0.002
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 154 KENHCLRIKLLGDCYYCVSGLPK 176
++ +I++ GD Y VSG+P+
Sbjct: 49 DQHGLEKIEVSGDSYMVVSGVPR 71
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural
genomics, structural genomics conso SGC, CGMP
biosynthesis; 2.08A {Homo sapiens}
Length = 225
Score = 43.8 bits (104), Expect = 7e-06
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 17/62 (27%)
Query: 98 GFTFTATNMSASC--LQISK----------DLQENH-CLRIKLLGDCYYCVSGLPKPRAD 144
GFT + + C LQ+ +++ +GD Y GL K
Sbjct: 24 GFT----AICSQCSPLQVITMLNALYTRFDQQCGELDVYKVETIGDAYCVAGGLHKESDT 79
Query: 145 HA 146
HA
Sbjct: 80 HA 81
Score = 31.5 bits (72), Expect = 0.11
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 161 IKLLGDCYYCVSGLPK 176
++ +GD Y GL K
Sbjct: 60 VETIGDAYCVAGGLHK 75
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1,
metal-binding, CGMP biosynthesis, nucleotide-B cyclase,
GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Length = 219
Score = 42.0 bits (99), Expect = 4e-05
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 125 IKLLGDCYYCVSGLPKPRADHA 146
++ +GD Y VSGLP+P HA
Sbjct: 65 VETVGDKYMTVSGLPEPCIHHA 86
Score = 31.6 bits (72), Expect = 0.11
Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 20/79 (25%)
Query: 98 GFTFTATNMSASCLQISKDLQENHCLRIKLLGDCYYCVSGLPKPRADHATLLNYKKKENH 157
GF + ++ + LL D Y L YK
Sbjct: 22 GFN----AFCSKHASGEGAMK-----IVNLLNDLYTRFDTLTD---SRKNPFVYK----- 64
Query: 158 CLRIKLLGDCYYCVSGLPK 176
++ +GD Y VSGLP+
Sbjct: 65 ---VETVGDKYMTVSGLPE 80
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic,
lyase, membrane, transmembrane; 2.55A {Chlamydomonas
reinhardtii} PDB: 3et6_B
Length = 190
Score = 41.5 bits (98), Expect = 5e-05
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 14/61 (22%)
Query: 98 GFTFTATNMSASCLQISKDLQ----------ENH--CLRIKLLGDCYYCVSGLPKPRADH 145
GFT A+ S L++ L E + +++ +GD Y V + P DH
Sbjct: 19 GFTEIASRSSP--LEVXSLLDELYQRFDAAIEEYPQLYKVETIGDAYMVVCNVTVPCDDH 76
Query: 146 A 146
A
Sbjct: 77 A 77
Score = 28.8 bits (65), Expect = 0.81
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 161 IKLLGDCYYCVSGLPK 176
++ +GD Y V +
Sbjct: 56 VETIGDAYMVVCNVTV 71
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase;
HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB:
1y11_A*
Length = 407
Score = 39.6 bits (92), Expect = 4e-04
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 9/75 (12%)
Query: 96 LSGFT--------FTATNMSASCLQISKDLQENHCLRIKLLGDCYYCVSGLPKPRADHAT 147
L GFT +++ +++DL IK +GD V P P D
Sbjct: 223 LVGFTQLGEVVSAEELGHLAGRLAGLARDLTAPPVWFIKTIGDAVMLVCPDPAPLLDTVL 282
Query: 148 -LLNYKKKENHCLRI 161
L+ +N+ R+
Sbjct: 283 KLVEVVDTDNNFPRL 297
Score = 27.3 bits (60), Expect = 3.3
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 161 IKLLGDCYYCVSGLP 175
IK +GD V P
Sbjct: 260 IKTIGDAVMLVCPDP 274
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK;
2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B*
1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B*
2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B*
3maa_B* 1cul_B*
Length = 220
Score = 29.9 bits (68), Expect = 0.36
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 125 IKLLGDCYYCVSGLP-KPRADHATLLNYKKKENHCLRI 161
IK +G Y +GL P +HA +++ H +
Sbjct: 67 IKTIGSTYMAATGLSAIPSQEHAQ--EPERQYMHIGTM 102
Score = 28.7 bits (65), Expect = 1.1
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 153 KKENHCL-RIKLLGDCYYCVSGLPKTEWDR 181
K + + +IK +G Y +GL
Sbjct: 58 KPKFSGVEKIKTIGSTYMAATGLSAIPSQE 87
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes,
adenylyl cyclases, monomer-dimer, catalysis, lyase;
1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Length = 235
Score = 27.9 bits (62), Expect = 1.7
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 125 IKLLGDCYYCVSGLPKPRADHA 146
+K +GD + S P A
Sbjct: 57 VKTVGDSFMIASKSPFAAVQLA 78
>3b8m_A Ferric enterobactin (enterochelin) transport; WZZ, FEPE, bacterial
polysaccharide CO-polymerase, metal transport,
biosynthetic protein; 2.70A {Escherichia coli} SCOP:
d.58.60.1 PDB: 3b8n_A 4e2l_A
Length = 280
Score = 27.8 bits (61), Expect = 2.4
Identities = 4/75 (5%), Positives = 19/75 (25%)
Query: 56 GMYTKYLTDRGQRRAFLETHRSTETRMKTQKENDQQEKLLLSGFTFTATNMSASCLQISK 115
++ K +L + ++K K ++ + + + + +
Sbjct: 54 NLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKD 113
Query: 116 DLQENHCLRIKLLGD 130
+ +
Sbjct: 114 EPSLYTSWTLSFTAP 128
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 3.0
Identities = 30/208 (14%), Positives = 60/208 (28%), Gaps = 65/208 (31%)
Query: 7 SHRQRQKSLIIVPGQSRISGGVPASRSVFHFGAFCPE----FPFFCPVGINSAGMYTKYL 62
+ + L+++ +V + + F C + + + K +
Sbjct: 239 KSKPYENCLLVL-------------LNVQN-----AKAWNAFNLSCKILLTTR---FKQV 277
Query: 63 TDRGQRRAFLETHRSTETRMKTQKENDQQEKLLLSGFTFTATNMSASCLQISKDLQENHC 122
TD A TH S + T D+ + LLL + L +++ +
Sbjct: 278 TDFLS--AATTTHISLDHHSMTLTP-DEVKSLLLK-----YLDCRPQDL--PREVLTTNP 327
Query: 123 LRIKLLGDCYYCVSGLPKPRADHATLLNYK----KKENHCLRIKL-------LGDCYYCV 171
R+ ++ + R AT N+K K + L + +
Sbjct: 328 RRLSIIAESI---------RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 172 SGLPKTE----------WDREKKTDCTD 189
S P + W K+D
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMV 406
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron,
DIIRON, carboxylate, oxidase, ligand, C monooxygenase;
HET: MYR; 1.90A {Mycobacterium tuberculosis}
Length = 323
Score = 27.0 bits (60), Expect = 4.4
Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 49 PVGINSAGMYTKYLTDRGQRR 69
P ++ + +Y TD+G RR
Sbjct: 263 PFDLS-KDDFLQYSTDKGMRR 282
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc,
oxidoreductase; HET: MSE; 1.85A {Sulfolobus
solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A
1nvg_A 3i4c_A 2eer_A*
Length = 347
Score = 26.8 bits (60), Expect = 4.7
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 16/37 (43%)
Query: 129 GDCYYCVSGLPKPRADHATLLNYKKKENHCLRIKLLG 165
G+CYYC G +E+ C + LG
Sbjct: 99 GNCYYCRIG----------------EEHLCDSPRWLG 119
>3e3m_A Transcriptional regulator, LACI family; structural genomics,
DNA-binding, plasmid, transcription regulation, PSI-2;
1.60A {Silicibacter pomeroyi}
Length = 355
Score = 26.8 bits (60), Expect = 5.0
Identities = 13/36 (36%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 50 VGI-NSAGMY--TKYLTDRGQRR-AFLETHRSTETR 81
VG N Y T L RG R+ FL TR
Sbjct: 167 VGFSNERAAYDMTNALLARGFRKIVFLGEKDDDWTR 202
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Length = 356
Score = 26.4 bits (59), Expect = 6.3
Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 12/67 (17%)
Query: 96 LSGFTFTATNMSASCLQISKDLQENHCLRIKLLGDCYYCVSGLPKPRADHATLLNYKKKE 155
L+G + L +S + GD + L + ++ + E
Sbjct: 29 LTGLRLHEVGERLAILAVSAE------------GDYRFLAPSLYENVVNNFPATFWHDGE 76
Query: 156 NHCLRIK 162
N +++
Sbjct: 77 NPYAKLR 83
>3h5o_A Transcriptional regulator GNTR; transcription regulator,
GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding;
2.30A {Chromobacterium violaceum}
Length = 339
Score = 26.4 bits (59), Expect = 6.8
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 47 FCPVGI-NSAGMY--TKYLTDRGQRR-AFLETHRSTETRMKTQ 85
C VG T++L RG+RR FL +
Sbjct: 155 RCCVGFSQEDAGAAITRHLLSRGKRRIGFLGAQLDERVMKRLD 197
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid
dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter
salexigens}
Length = 267
Score = 26.1 bits (58), Expect = 8.0
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 34 VFHFGAFCPEFPFFCPVGINSAGMY 58
+ H G E P+ + N G Y
Sbjct: 67 IIHLGGVSVERPWNDILQANIIGAY 91
>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix
polysia; HET: PEG; 1.70A {Escherichia coli}
Length = 252
Score = 25.9 bits (57), Expect = 8.7
Identities = 9/55 (16%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 76 RSTETRMKTQKENDQQEKLLLSGFTFTATNMSASCLQISKDLQENHCLRIKLLGD 130
++ ++R+KTQ L + +F+ + + + + DL + +++ G+
Sbjct: 12 KTQDSRLKTQDSR------LKTQDSFSVDDNGSGNVFVCGDLVNSKENKVQFNGN 60
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.430
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,888,343
Number of extensions: 152593
Number of successful extensions: 386
Number of sequences better than 10.0: 1
Number of HSP's gapped: 386
Number of HSP's successfully gapped: 24
Length of query: 197
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 108
Effective length of database: 4,216,824
Effective search space: 455416992
Effective search space used: 455416992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.0 bits)