BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1757
(348 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 96/179 (53%), Positives = 129/179 (72%), Gaps = 5/179 (2%)
Query: 6 NGTAGPG-RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVT 64
N +A G R+D+RKLFVGGL T EKE+ D+F +YGE+ESI++K DP TG+SRGFAF+
Sbjct: 44 NQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIV 103
Query: 65 YTTQKAVDDLLAAGDHYIGNKKIDPKRVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQY 124
+T +A+D + AA +H I +KK+DPK+ R KIFVGGLTTEI++++++ YF Q+
Sbjct: 104 FTNTEAIDKVSAADEHIINSKKVDPKKAKAR----HGKIFVGGLTTEISDEEIKTYFGQF 159
Query: 125 GSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFNPETM 183
G+I E + PFDK K+ +KGFCFI+FD + V +LK PKQ I GKEVDVKR PE
Sbjct: 160 GNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQ 218
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 135 bits (341), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 133/256 (51%), Gaps = 24/256 (9%)
Query: 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDD 73
+D K+F+GGL T ++ + +YF Q+GEV+ + DP T +SRGF FVT+ Q VD
Sbjct: 17 HDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDK 76
Query: 74 LLAAGDHYIGNKKIDPK-RVTKRVNPLKC----KIFVGGLTTEITEQDVRDYFSQYGSIT 128
+LA H + +K IDPK +R P KIFVGGL+ T +DV+ YF Q+G +
Sbjct: 77 VLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVD 136
Query: 129 EFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFNPETMGSVSG 188
+ FDK+ N +GF F++F+ +++ ++V + I K V+ K+ + P+ + S +G
Sbjct: 137 DAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ--PKEVMSPTG 194
Query: 189 AVRGAGARVSSAGAAYAAAPGRVVAYPSTYAGYAAADYGYTAGSYDAYATAYPGYDYSAM 248
+ RG + A+ G ++ YP G+ A +Y + + Y A
Sbjct: 195 SARGRSRVMPYGMDAFMLGIG-MLGYP-----------GFQATTYASRS-----YTGLAP 237
Query: 249 GYAYPAPAVQTMDTPL 264
GY Y P + TPL
Sbjct: 238 GYTYQFPEFRVERTPL 253
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 135 bits (340), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 133/256 (51%), Gaps = 24/256 (9%)
Query: 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDD 73
+D K+F+GGL T ++ + +YF Q+GEV+ + DP T +SRGF FVT+ Q VD
Sbjct: 17 HDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDK 76
Query: 74 LLAAGDHYIGNKKIDPK-RVTKRVNPLKC----KIFVGGLTTEITEQDVRDYFSQYGSIT 128
+LA H + +K IDPK +R P KIFVGGL+ T +DV+ YF Q+G +
Sbjct: 77 VLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVD 136
Query: 129 EFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFNPETMGSVSG 188
+ FDK+ N +GF F++F+ +++ ++V + I K V+ K+ + P+ + S +G
Sbjct: 137 DAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ--PKEVMSPTG 194
Query: 189 AVRGAGARVSSAGAAYAAAPGRVVAYPSTYAGYAAADYGYTAGSYDAYATAYPGYDYSAM 248
+ RG + A+ G ++ YP G+ A +Y + + Y A
Sbjct: 195 SARGRSRVMPYGMDAFMLGIG-MLGYP-----------GFQATTYASRS-----YTGLAP 237
Query: 249 GYAYPAPAVQTMDTPL 264
GY Y P + TPL
Sbjct: 238 GYTYQFPEFRVERTPL 253
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 135 bits (339), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 127/237 (53%), Gaps = 17/237 (7%)
Query: 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDD 73
+D K+F+GGL T ++ + +YF Q+GEV+ + DP T +SRGF FVT+ Q VD
Sbjct: 17 HDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDK 76
Query: 74 LLAAGDHYIGNKKIDPK-RVTKRVNPLKC----KIFVGGLTTEITEQDVRDYFSQYGSIT 128
+LA H + +K IDPK +R P KIFVGGL+ T +DV+ YF Q+G +
Sbjct: 77 VLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVD 136
Query: 129 EFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFNPETMGSVSG 188
+ FDK+ N +GF F++F+ +++ ++V + I K V+ K+ + P+ + S +G
Sbjct: 137 DAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ--PKEVMSPTG 194
Query: 189 AVRGAGARVSSAGAAYAAAPGRVVAYPSTYAGYAAADYGYTAGSYDAYATAYPGYDY 245
+ RG + A+ G ++ YP G+ A Y + +Y PGY Y
Sbjct: 195 SARGRSRVMPYGMDAFMLGIG-MLGYP----GFQATTY-----ASRSYTGLAPGYTY 241
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 104/168 (61%), Gaps = 2/168 (1%)
Query: 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTT 67
A D K+FVGGL +T +K++ DYF+++GEV +IK DP TG+SRGF F+ +
Sbjct: 66 NASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKD 125
Query: 68 QKAVDDLLAAGDHYIGNKKIDPKR-VTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGS 126
+V+ +L +H + + IDPK+ + + +P+K KIFVGGL E TE+ +R+YF Q+G
Sbjct: 126 SSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVK-KIFVGGLNPEATEEKIREYFGQFGE 184
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVK 174
I + P D N ++GF FI+F +++ +VL+ + G + ++K
Sbjct: 185 IEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIK 232
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 121/234 (51%), Gaps = 15/234 (6%)
Query: 6 NGTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTY 65
+G+A ++D K+F+GGL T + DYFS++GE+ + DP T +SRGF FVT+
Sbjct: 10 SGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTF 69
Query: 66 TTQKAVDDLLAAGDHYIGNKKIDPK-RVTKRVNPLKC----KIFVGGLTTEITEQDVRDY 120
+VD +L H + +K IDPK +R P KIFVGGL+ +DV+ Y
Sbjct: 70 ADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQY 129
Query: 121 FSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK------NPKQVICGKEVDVK 174
F Q+G + + FDK+ N +GF F++F++++V ++V + N K V C K+ K
Sbjct: 130 FEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVEC-KKAQPK 188
Query: 175 RVKFNPETMGSVSGAVRGAGARVSSAGAAYAAAPGRVVAYPSTYAGYAAADYGY 228
V F P T G G A + G P V Y Y G+A + YGY
Sbjct: 189 EVMFPPGTRGRARGLPYTMDAFM--LGMGMLGYPNFVATYGRGYPGFAPS-YGY 239
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 121/234 (51%), Gaps = 15/234 (6%)
Query: 6 NGTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTY 65
+G+A ++D K+F+GGL T + DYFS++GE+ + DP T +SRGF FVT+
Sbjct: 10 SGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTF 69
Query: 66 TTQKAVDDLLAAGDHYIGNKKIDPK-RVTKRVNPLKC----KIFVGGLTTEITEQDVRDY 120
+VD +L H + +K IDPK +R P KIFVGGL+ +DV+ Y
Sbjct: 70 ADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQY 129
Query: 121 FSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK------NPKQVICGKEVDVK 174
F Q+G + + FDK+ N +GF F++F++++V ++V + N K V C K+ K
Sbjct: 130 FEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVEC-KKAQPK 188
Query: 175 RVKFNPETMGSVSGAVRGAGARVSSAGAAYAAAPGRVVAYPSTYAGYAAADYGY 228
V F P T G G A + G P V Y Y G+A + YGY
Sbjct: 189 EVMFPPGTRGRARGLPYTMDAFM--LGMGMLGYPNFVATYGRGYPGFAPS-YGY 239
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 132 bits (332), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 98/154 (63%), Gaps = 3/154 (1%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A + +E K+F+GGL +T +K++ DYFS++GEV ++K DP TG+SRGF FV +
Sbjct: 89 AAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 69 KAVDDLLAAGDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGS 126
++VD ++ +H + K IDPKR K P+K KIFVGGL+ + E+ +R+YF +G
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK-KIFVGGLSPDTPEEKIREYFGGFGE 207
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK 160
+ + P D N ++GFCFI+F ++ ++++
Sbjct: 208 VESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 132 bits (332), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 98/154 (63%), Gaps = 3/154 (1%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A + +E K+F+GGL +T +K++ DYFS++GEV ++K DP TG+SRGF FV +
Sbjct: 89 AATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 69 KAVDDLLAAGDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGS 126
++VD ++ +H + K IDPKR K P+K KIFVGGL+ + E+ +R+YF +G
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK-KIFVGGLSPDTPEEKIREYFGGFGE 207
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK 160
+ + P D N ++GFCFI+F ++ ++++
Sbjct: 208 VESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 131 bits (329), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 102/169 (60%), Gaps = 3/169 (1%)
Query: 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTT 67
A + D+ K+F+GGL +T +K++ +Y S++GEV +IK DP TG+SRGF FV +
Sbjct: 139 NASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKD 198
Query: 68 QKAVDDLLAAGDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYG 125
+VD +L +H + K IDPKR K P K K+FVGGL+ + +E+ +++YF +G
Sbjct: 199 AASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPK-KVFVGGLSPDTSEEQIKEYFGAFG 257
Query: 126 SITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVK 174
I + P D N ++GFCFI++ D+ ++L++ I + ++K
Sbjct: 258 EIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIK 306
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 98/154 (63%), Gaps = 3/154 (1%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A + +E K+F+GGL +T +K++ DYFS++G+V ++K DP TG+SRGF FV +
Sbjct: 87 AATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKES 146
Query: 69 KAVDDLLAAGDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGS 126
++VD ++ +H + K IDPKR K P+K KIFVGGL+ + E+ +R+YF +G
Sbjct: 147 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK-KIFVGGLSPDTPEEKIREYFGGFGE 205
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK 160
+ + P D N ++GFCFI+F ++ ++++
Sbjct: 206 VESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
>sp|Q640A2|HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus
tropicalis GN=hnrpdl PE=2 SV=1
Length = 297
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 132/250 (52%), Gaps = 9/250 (3%)
Query: 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTT 67
A + DE K+F+GGL +T +K++ +Y S++GEV +IK DP TG+SRGF FV +
Sbjct: 17 NASKNQQDEGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKD 76
Query: 68 QKAVDDLLAAGDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYG 125
+VD +L +H + K IDPKR K P K K+FVGGL+ E TE+ ++ YF +G
Sbjct: 77 AVSVDKVLETKEHKLDGKLIDPKRAKALKGKEPPK-KVFVGGLSPETTEEQIKQYFGGFG 135
Query: 126 SITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFNPETMGS 185
I + P D N ++GFCF+++ + ++L++ I + ++K + P+ +
Sbjct: 136 EIENIELPMDTKTNERRGFCFVTYTGEEPVKKLLESRFHQIGTGKCEIKVAQ--PKEVYR 193
Query: 186 VSGAVRGAGARVSSAGAAYAAAPGRVVAYPSTYAGYAAADYGY--TAGSY--DAYATAYP 241
+ G R ++ G A GR + Y+ Y +YG GSY Y +Y
Sbjct: 194 QQQQKQQKGGRGAATGRGGARGRGRGQGWNQGYSNYYDQNYGSYGNNGSYADQGYNNSYS 253
Query: 242 GYDYSAMGYA 251
GYDYS Y
Sbjct: 254 GYDYSGYNYG 263
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 102/186 (54%), Gaps = 5/186 (2%)
Query: 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDD 73
ND K+F+GGL T + + DYF +YG++ + DP T +SRGF FVT++ +VD
Sbjct: 26 NDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDK 85
Query: 74 LLAAGDHYIGNKKIDPK-RVTKRVNPLKC----KIFVGGLTTEITEQDVRDYFSQYGSIT 128
+L G H + KK+DPK +R +P KIFVGGL+ T +DV+ YF Q+G I
Sbjct: 86 VLTQGTHELDGKKVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIE 145
Query: 129 EFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFNPETMGSVSG 188
+ FDK N +GF F++F ++V D+V + I K V+ K+ + + +
Sbjct: 146 DAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKEVMLPANLA 205
Query: 189 AVRGAG 194
R AG
Sbjct: 206 KTRAAG 211
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 128 bits (322), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 98/159 (61%), Gaps = 3/159 (1%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
K+F+GGL +T +K++ +Y S++GEV +IK DP TG+SRGF FV + +VD +L
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 78 GDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFD 135
+H + K IDPKR K P K K+FVGGL+ + +E+ +++YF +G I + P D
Sbjct: 112 KEHKLDGKLIDPKRAKALKGKEPPK-KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMD 170
Query: 136 KSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVK 174
N ++GFCFI++ D+ ++L++ I + ++K
Sbjct: 171 TKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIK 209
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 51/79 (64%)
Query: 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAV 71
G+ +K+FVGGL +T E++I +YF +GE+E+I + D T + RGF F+TYT ++ V
Sbjct: 131 GKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPV 190
Query: 72 DDLLAAGDHYIGNKKIDPK 90
LL + H IG+ K + K
Sbjct: 191 KKLLESRYHQIGSGKCEIK 209
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 103/169 (60%), Gaps = 3/169 (1%)
Query: 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTT 67
A D K+FVGGL +T +K++ DYF+++GEV +IK DP TG+SRGF F+ +
Sbjct: 60 NASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKD 119
Query: 68 QKAVDDLLAAGDHYIGNKKIDPKR-VTKRVNPLKCKIFVGGLTTEI-TEQDVRDYFSQYG 125
+V+ +L +H + + IDPK+ + + +P+K KIFVGGL E TE+ +R+YF ++G
Sbjct: 120 AASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVK-KIFVGGLNPESPTEEKIREYFGEFG 178
Query: 126 SITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVK 174
I + P D N ++GF FI+F ++ +VL+ + G + ++K
Sbjct: 179 EIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIK 227
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 102/169 (60%), Gaps = 3/169 (1%)
Query: 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTT 67
A + D+ K+F+GGL +T +K++ +Y S++GEV +IK DP TG+SRGF FV +
Sbjct: 20 NASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKD 79
Query: 68 QKAVDDLLAAGDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYG 125
+VD +L +H + K IDPKR K P K K+FVGGL+ + +E+ +++YF +G
Sbjct: 80 AASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPK-KVFVGGLSPDTSEEQIKEYFGAFG 138
Query: 126 SITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVK 174
I + P D N ++GFCFI++ D+ ++L++ I + ++K
Sbjct: 139 EIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIK 187
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 102/169 (60%), Gaps = 3/169 (1%)
Query: 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTT 67
A + D+ K+F+GGL +T +K++ +Y S++GEV +IK DP TG+SRGF FV +
Sbjct: 21 NASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKD 80
Query: 68 QKAVDDLLAAGDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYG 125
+V+ +L +H + K IDPKR K P K K+FVGGL+ + +E+ +++YF +G
Sbjct: 81 AASVEKVLELKEHKLDGKLIDPKRAKALKGKEPPK-KVFVGGLSPDTSEEQIKEYFGAFG 139
Query: 126 SITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVK 174
I + P D N ++GFCFI++ D+ ++L++ I + ++K
Sbjct: 140 EIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIK 188
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis
GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 100/169 (59%), Gaps = 3/169 (1%)
Query: 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTT 67
A + DE K+F+GGL +T +K++ +Y S++GEV +IK DP TG+SRGF FV +
Sbjct: 17 NASKNQQDEGKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKD 76
Query: 68 QKAVDDLLAAGDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYG 125
+VD +L +H + K IDPKR K P K K+FVGGL+ E TE+ ++ YF +G
Sbjct: 77 AVSVDKVLETNEHKLDGKLIDPKRAKALKGKEPPK-KVFVGGLSPETTEEQIKQYFGGFG 135
Query: 126 SITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVK 174
I + P D N ++GFCF+++ + ++L++ I + ++K
Sbjct: 136 EIENIELPIDTKTNERRGFCFVTYTGEEPVKKLLESRFHQIGTGKCEIK 184
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
OS=Schistocerca americana GN=HNRNP PE=2 SV=1
Length = 342
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F Q+GE+ + + DP T +SRGF F+TY+ VDD
Sbjct: 17 RKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQN 76
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLK-------CKIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + K+FVGG+ E+ E D+RDYF QYG++
Sbjct: 77 ARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVS 136
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
DK K+GF F+ FDD + D++ + I GK +DVK+
Sbjct: 137 AAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNHQIRGKHIDVKK 182
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 3/159 (1%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
K+F+GGL +T +K++ +Y S++GEV +IK DP TG+SRGF FV + +VD +L
Sbjct: 35 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 94
Query: 78 GDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFD 135
+H + K IDPKR + P K K+FVGGL+ E TE+ ++ YF +G I + P D
Sbjct: 95 KEHKLDGKLIDPKRAKALQGKEPPK-KVFVGGLSPETTEEQIKQYFGGFGEIENIELPMD 153
Query: 136 KSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVK 174
N ++GFCF+++ D+ ++L++ I + ++K
Sbjct: 154 TKTNERRGFCFVTYTDEEPVQKLLESRFHQIGTGKCEIK 192
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 48/79 (60%)
Query: 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAV 71
G+ +K+FVGGL T E++I YF +GE+E+I + D T + RGF FVTYT ++ V
Sbjct: 114 GKEPPKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPV 173
Query: 72 DDLLAAGDHYIGNKKIDPK 90
LL + H IG K + K
Sbjct: 174 QKLLESRFHQIGTGKCEIK 192
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 91 RVTKRVNP----LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCF 146
R K NP ++ K+F+GGL+ + +++D+ +Y S++G + + D +GF F
Sbjct: 20 RRHKESNPDFFLIRSKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGF 79
Query: 147 ISFDDQNVADQVLKNPKQVICGKEVDVKRVK 177
+ F D D+VL+ + + GK +D KR K
Sbjct: 80 VLFKDAVSVDKVLETKEHKLDGKLIDPKRAK 110
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Query: 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKA 70
P ++ K+F+GGL+ T + + DYF Q+GEV ++ D TG+SRGF F+T+ K
Sbjct: 157 PFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKC 216
Query: 71 VDDLLAAGDHYIGNKKIDPKRVTKRVNPLK-CKIFVGGLTTEITEQDVRDYFSQYGSITE 129
V+++++ +H++ K IDPKR R K K+FVGG+ + TE++ R++F+Q+G + +
Sbjct: 217 VNEVMSK-EHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLD 275
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRV 176
DK +GF F+++++++ + + P I GK V+VKR
Sbjct: 276 ATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRA 322
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
K+FVGG+ + E+E ++F+Q+G V ++ D TG+ RGF FVTY + AV+ ++
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 78 GDHYIGNKKIDPKRVTKRV 96
I K ++ KR T +
Sbjct: 308 PYITIHGKPVEVKRATPKA 326
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 111/226 (49%), Gaps = 23/226 (10%)
Query: 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAV 71
G ++ KLFVGGL +T ++ + YFSQYGEV I D T QSRGF FV + V
Sbjct: 5 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 72 DDLLAAGDHYIGNKKIDPKRVTKR-VNPLKC------------------KIFVGGLTTEI 112
+LA+ H + + IDPK T R + P + KIFVGG+
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNC 124
Query: 113 TEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVD 172
E ++R+YF ++G +TE +D K +GF FI+F+D+ DQ + I GK+V+
Sbjct: 125 GETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVE 184
Query: 173 VKRVKFNPETMGSVSGAVRGAGARVSSAGAAYAAAPGRVVAYPSTY 218
VKR E S + A GA + A +AA G P T+
Sbjct: 185 VKRA----EPRDSKNQAPGQPGASQWGSRVAPSAANGWAGQPPPTW 226
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 112/240 (46%), Gaps = 28/240 (11%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
KLFVGGL +T ++ + YFSQYGEV I D T QSRGF FV + V +LA+
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 78 GDHYIGNKKIDPKRVTKR--------------------VNPLKCKIFVGGLTTEITEQDV 117
H + + IDPK T R N KIFVGG+ E ++
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETEL 130
Query: 118 RDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVK 177
++YF+++G +TE +D K +GF FI+F+D+ DQ + I GK+V+VKR
Sbjct: 131 KEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA- 189
Query: 178 FNPETMGSVSGAVRGAGARVSSAGAAYAAAPGRVVAYPSTYAGYAAADY----GYTAGSY 233
E S S G+ + A + A G P T+ GY+ G T G Y
Sbjct: 190 ---EPRDSKSQTPGPPGSNQWGSRAMQSTANGWTGQPPQTWQGYSPQGMWMPTGQTIGGY 246
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 111/220 (50%), Gaps = 25/220 (11%)
Query: 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAV 71
G ++ KLFVGGL +T ++ + YFSQYGEV I D T QSRGF FV + V
Sbjct: 5 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 72 DDLLAAGDHYIGNKKIDPKRVTKR-VNPLKC------------------KIFVGGLTTEI 112
+LA+ H + + IDPK T R + P + KIFVGG+
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNC 124
Query: 113 TEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVD 172
E ++R+YF ++G +TE +D K +GF FI+F+D+ DQ + I GK+V+
Sbjct: 125 GETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVE 184
Query: 173 VKRVKFNPETMGSVSGAVRGA---GAR-VSSAGAAYAAAP 208
VKR + P S + GA G+R V +A +A P
Sbjct: 185 VKRAE--PRDSKSQAPGQPGASQWGSRVVPNAANGWAGQP 222
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 118 bits (295), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 100/169 (59%), Gaps = 6/169 (3%)
Query: 15 DER-KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDD 73
DER KLFVGGL T ++ ++ YF ++G++ + + +G+SRGF FVT+ V+
Sbjct: 4 DERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNH 63
Query: 74 LLAAGDHYIGNKKIDPKRVTKRV--NPLKC---KIFVGGLTTEITEQDVRDYFSQYGSIT 128
+L G H + + IDPK R P K K+F+GGL + +TE D+R +F++YG +T
Sbjct: 64 VLQNGPHTLDGRTIDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVT 123
Query: 129 EFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVK 177
E +D+ K +GF F+SF++++ + V + GK+V++K+ +
Sbjct: 124 EVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAE 172
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
K+F+GGL N E ++ +F++YG+V + I D +SRGF F+++ + +V+ +
Sbjct: 97 KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNE 156
Query: 78 GDHYIGNKKIDPKRVTKR 95
+ K+++ K+ R
Sbjct: 157 RYINLNGKQVEIKKAEPR 174
>sp|Q5RBU8|ROA2_PONAB Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii
GN=HNRNPA2B1 PE=2 SV=1
Length = 353
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 99/186 (53%), Gaps = 8/186 (4%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T E+ + +Y+ Q+G++ + DP + +SRGF FVT+++ VD +A
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLK-------CKIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H I + ++PKR R K K+FVGG+ + E +RDYF +YG I
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 140
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFNPETMGSVSGA 189
+ D+ K+GF F++FDD + D+++ I G +V++ + + M V +
Sbjct: 141 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNAEVRKA-LSRQEMQEVQSS 199
Query: 190 VRGAGA 195
G G
Sbjct: 200 RSGRGG 205
>sp|Q9TTV2|ROA2_SAGOE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus
GN=HNRNPA2B1 PE=1 SV=1
Length = 341
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 100/186 (53%), Gaps = 8/186 (4%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T E+ + +Y+ Q+G++ + DP + +SRGF FVT+++ VD +A
Sbjct: 9 RKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLK-------CKIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H I + ++PKR R K K+FVGG+ + E +RDYF++YG I
Sbjct: 69 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDT 128
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFNPETMGSVSGA 189
+ D+ K+GF F++FDD + D+++ I G +V++ + + M V +
Sbjct: 129 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA-LSRQEMQEVQSS 187
Query: 190 VRGAGA 195
G G
Sbjct: 188 RSGRGG 193
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 90/166 (54%), Gaps = 7/166 (4%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTY T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMN 73
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLK-------CKIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + + KIFVGG+ + E +RDYF QYG I
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD N D+++ + G +V++
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRK 179
>sp|Q2HJ60|ROA2_BOVIN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus
GN=HNRNPA2B1 PE=2 SV=1
Length = 341
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 99/186 (53%), Gaps = 8/186 (4%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T E+ + +Y+ Q+G++ + DP + +SRGF FVT+++ VD +A
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLK-------CKIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H I + ++PKR R K K+FVGG+ + E +RDYF +YG I
Sbjct: 69 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 128
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFNPETMGSVSGA 189
+ D+ K+GF F++FDD + D+++ I G +V++ + + M V +
Sbjct: 129 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA-LSRQEMQEVQSS 187
Query: 190 VRGAGA 195
G G
Sbjct: 188 RSGRGG 193
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus
GN=Hnrnpa2b1 PE=1 SV=2
Length = 353
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 99/186 (53%), Gaps = 8/186 (4%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T E+ + +Y+ Q+G++ + DP + +SRGF FVT+++ VD +A
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLK-------CKIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H I + ++PKR R K K+FVGG+ + E +RDYF +YG I
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 140
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFNPETMGSVSGA 189
+ D+ K+GF F++FDD + D+++ I G +V++ + + M V +
Sbjct: 141 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA-LSRQEMQEVQSS 199
Query: 190 VRGAGA 195
G G
Sbjct: 200 RSGRGG 205
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens
GN=HNRNPA2B1 PE=1 SV=2
Length = 353
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 99/186 (53%), Gaps = 8/186 (4%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T E+ + +Y+ Q+G++ + DP + +SRGF FVT+++ VD +A
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLK-------CKIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H I + ++PKR R K K+FVGG+ + E +RDYF +YG I
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 140
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFNPETMGSVSGA 189
+ D+ K+GF F++FDD + D+++ I G +V++ + + M V +
Sbjct: 141 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA-LSRQEMQEVQSS 199
Query: 190 VRGAGA 195
G G
Sbjct: 200 RSGRGG 205
>sp|A7VJC2|ROA2_RAT Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus
GN=Hnrnpa2b1 PE=1 SV=1
Length = 353
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 98/186 (52%), Gaps = 8/186 (4%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T E+ + +Y+ Q+G++ + DP + +SRGF FVT+++ VD +A
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLK-------CKIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H I + ++PKR R K K+FVGG+ + E +RDYF +YG I
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 140
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFNPETMGSVSGA 189
+ D+ K+GF F++FDD + D++ I G +V++ + + M V +
Sbjct: 141 IEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTINGHNAEVRKA-LSRQEMQEVQSS 199
Query: 190 VRGAGA 195
G G
Sbjct: 200 RSGRGG 205
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 92/166 (55%), Gaps = 7/166 (4%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T + + ++F ++G + + DP T +SRGF FVTY+ + VD +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLK-------CKIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + +K KIFVGG+ + E ++RDYF +YG I
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIET 154
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ I G +VK+
Sbjct: 155 IEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKK 200
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 92/166 (55%), Gaps = 7/166 (4%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T + + ++F ++G + + DP T +SRGF FVTY+ + VD +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLK-------CKIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + +K KIFVGG+ + E ++RDYF +YG I
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIET 154
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ I G +VK+
Sbjct: 155 IEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKK 200
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 92/166 (55%), Gaps = 7/166 (4%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T + + ++F ++G + + DP T +SRGF FVTY+ + VD +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLK-------CKIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + +K KIFVGG+ + E ++RDYF +YG I
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIET 154
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ I G +VK+
Sbjct: 155 IEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKK 200
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 7/166 (4%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTY T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLK-------CKIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + + KIFVGG+ + E +RDYF QYG I
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ + G +V++
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 7/166 (4%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTY T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLK-------CKIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + + KIFVGG+ + E +RDYF QYG I
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ + G +V++
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1
PE=1 SV=2
Length = 320
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 7/166 (4%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTY T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLK-------CKIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + + KIFVGG+ + E +RDYF QYG I
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ + G +V++
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 7/166 (4%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTY T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLK-------CKIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + + KIFVGG+ + E +RDYF QYG I
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ + G +V++
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 115 bits (287), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 7/166 (4%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTY T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLK-------CKIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + + KIFVGG+ + E +RDYF QYG I
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ + G +V++
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 98/186 (52%), Gaps = 8/186 (4%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + ++F Q+G + + DP + +SRGF FVTY + VD +
Sbjct: 14 RKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMT 73
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLK-------CKIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + + KIFVGG+ + E +R+YF QYG I
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEV 133
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFNPETMGSVSGA 189
+ D+ K+GF F++F+D + D+++ + V++ + + M SVSG+
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNSQVRKA-LSKQEMASVSGS 192
Query: 190 VRGAGA 195
R G
Sbjct: 193 QRERGG 198
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 114 bits (286), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 96/161 (59%), Gaps = 2/161 (1%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
K+F+GGL+ +T E + +YF +YG V + I DP TG+SRGF F+++ +VD+++
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219
Query: 78 GDHYIGNKKIDPKRVTKRVNPLKC-KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDK 136
H + K IDPKR R K KIFVGG+ ++ ++ ++FSQ+G+I + Q DK
Sbjct: 220 -QHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK 278
Query: 137 SKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVK 177
+GF F+++D + D+V +N +++++KR +
Sbjct: 279 DTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAE 319
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 101 CKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK 160
CK+F+GGL + TE ++R+YF +YG++T+ + D + +GF F+SF+ + D+V+K
Sbjct: 159 CKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK 218
Query: 161 NPKQVICGKEVDVKRV 176
+ ++ GK +D KR
Sbjct: 219 T-QHILDGKVIDPKRA 233
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 96/166 (57%), Gaps = 7/166 (4%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RK+FVGGL NT + + +++SQ+GE+ I + DP T +SRGF FVT++ + VD +
Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
H I K +DPKR R + + +++V G+ + TE + +YF++YG++T+
Sbjct: 83 QRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTK 142
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ DK+ +GF F++FDD + DQ + ++ G DV++
Sbjct: 143 SEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRK 188
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 373
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 96/186 (51%), Gaps = 7/186 (3%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T + + ++F Q+G++ + DP T +SRGF FVTY+ + VD ++
Sbjct: 27 RKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMS 86
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLK-------CKIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + + KIFVGG+ + E +RDY YG I
Sbjct: 87 ARPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYSESYGKIET 146
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFNPETMGSVSGA 189
+ D+ K+GF F++FDD + D+++ I G +VK+ E + +
Sbjct: 147 IEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQTASAQR 206
Query: 190 VRGAGA 195
RG G
Sbjct: 207 GRGGGG 212
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 89/166 (53%), Gaps = 7/166 (4%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTY T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLK-------CKIFVGGLTTEITEQDVRDYFSQYGSITE 129
H + + ++PKR R + + KIFVGG+ + E +RDYF QYG I
Sbjct: 74 TTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ + G +V++
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRK 179
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 97/183 (53%), Gaps = 22/183 (12%)
Query: 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDD 73
+D+ KLFVGG+ T E ++ ++F+ YGEV + D TG+ RGF FV ++ +D
Sbjct: 3 SDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDR 62
Query: 74 LLAAGDHYIGNKKIDPKR--------VTKRVNPLKC-------------KIFVGGLTTEI 112
+L H I +++D KR V+ R L KIFVGGL +
Sbjct: 63 VLQE-KHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTL 121
Query: 113 TEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVD 172
T+++ R YF YG +T+ +D++ N +GF F+SFD ++ D VL + GK+V+
Sbjct: 122 TDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVE 181
Query: 173 VKR 175
VKR
Sbjct: 182 VKR 184
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDD 73
N +K+FVGGL ++E YF YG V ++I D T + RGF FV++ ++ AVD
Sbjct: 107 NKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDS 166
Query: 74 LLAAGDHYIGNKKIDPKR-VTKRVNP 98
+L H + K+++ KR + K NP
Sbjct: 167 VLHKTFHDLSGKQVEVKRALPKDANP 192
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 96/186 (51%), Gaps = 7/186 (3%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T + + ++F Q+G++ + DP T +SRGF FVTY+ + VD ++
Sbjct: 27 RKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMS 86
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLK-------CKIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + + KIFVGG+ + E +RDYF YG I
Sbjct: 87 ARPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGKIET 146
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFNPETMGSVSGA 189
+ D+ K+GF F++FDD + D+++ I +VK+ E + +
Sbjct: 147 IEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINLHNCEVKKALSKQEMQTASAQR 206
Query: 190 VRGAGA 195
RG G
Sbjct: 207 GRGGGG 212
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila
melanogaster GN=Hrb98DE PE=2 SV=1
Length = 365
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 91/166 (54%), Gaps = 7/166 (4%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F ++G + + + DP T +SRGF F+TY+ +D+
Sbjct: 31 RKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQK 90
Query: 77 AGDHYIGNKKIDPKRVTKRVN-------PLKCKIFVGGLTTEITEQDVRDYFSQYGSITE 129
+ H I + ++PKR R + K+FVG L + EQ +RDYF +G+I +
Sbjct: 91 SRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVD 150
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
DK K+GF F+ FDD + D+V+ + + GK VDVK+
Sbjct: 151 INIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKK 196
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 346
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 89/166 (53%), Gaps = 7/166 (4%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T E+ + +Y+ Q+G + + DP + +SRGF FVT++ VD +A
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMA 68
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLK-------CKIFVGGLTTEITEQDVRDYFSQYGSITE 129
H I + ++PKR R K K+FVGG+ + E +R+YF +YG I
Sbjct: 69 TRPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDS 128
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ DK K+GF F++FDD + D+++ I G +V++
Sbjct: 129 IEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTINGHNAEVRK 174
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 358
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 7/166 (4%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T E+ + +++ Q+G++ + DP + +SRGF FVT++ VD ++
Sbjct: 9 RKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMS 68
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLK-------CKIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H I + ++PKR R K K+FVGG+ + E +R+YF +YG I
Sbjct: 69 ARPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIES 128
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ DK K+GF F++F+D + D+++ I G +V++
Sbjct: 129 TEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNAEVRK 174
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,692,387
Number of Sequences: 539616
Number of extensions: 6063543
Number of successful extensions: 19604
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 267
Number of HSP's that attempted gapping in prelim test: 16454
Number of HSP's gapped (non-prelim): 2694
length of query: 348
length of database: 191,569,459
effective HSP length: 118
effective length of query: 230
effective length of database: 127,894,771
effective search space: 29415797330
effective search space used: 29415797330
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)