Query psy1757
Match_columns 348
No_of_seqs 350 out of 2698
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 16:55:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1757.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1757hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 3.9E-36 8.5E-41 285.8 24.9 173 11-183 102-279 (346)
2 KOG0148|consensus 100.0 2.3E-32 4.9E-37 240.7 19.1 164 13-182 59-241 (321)
3 TIGR01648 hnRNP-R-Q heterogene 100.0 1.8E-30 3.9E-35 259.2 25.4 164 10-182 52-310 (578)
4 TIGR01645 half-pint poly-U bin 100.0 1.2E-30 2.7E-35 260.8 18.9 169 13-181 104-286 (612)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 9.4E-30 2E-34 244.4 18.4 166 15-180 2-172 (352)
6 KOG0144|consensus 100.0 6.3E-30 1.4E-34 237.8 13.8 174 10-184 28-211 (510)
7 TIGR01622 SF-CC1 splicing fact 100.0 5.7E-29 1.2E-33 247.2 19.8 168 12-179 85-266 (457)
8 KOG0117|consensus 100.0 1.7E-28 3.8E-33 229.2 20.9 168 8-183 75-335 (506)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.6E-28 3.4E-33 235.9 20.0 168 14-181 87-351 (352)
10 TIGR01628 PABP-1234 polyadenyl 100.0 5.6E-27 1.2E-31 238.6 26.4 167 13-181 175-366 (562)
11 TIGR01628 PABP-1234 polyadenyl 100.0 1.2E-27 2.6E-32 243.5 18.2 161 18-179 2-167 (562)
12 KOG4205|consensus 99.9 3.1E-27 6.6E-32 219.1 16.3 171 14-184 4-181 (311)
13 KOG0145|consensus 99.9 5.3E-26 1.1E-30 199.5 13.8 168 13-180 38-210 (360)
14 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.3E-25 5.1E-30 224.1 19.6 163 11-179 170-375 (509)
15 KOG0131|consensus 99.9 9.5E-26 2.1E-30 188.6 12.2 171 11-181 4-179 (203)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 4E-25 8.6E-30 220.7 17.2 156 15-180 1-175 (481)
17 KOG0127|consensus 99.9 2.1E-24 4.4E-29 206.1 15.5 165 16-181 5-198 (678)
18 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 4.4E-24 9.6E-29 213.1 17.9 159 14-179 273-480 (481)
19 KOG0109|consensus 99.9 6.1E-25 1.3E-29 195.6 9.9 153 17-186 3-157 (346)
20 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.6E-23 3.5E-28 210.8 19.1 167 13-179 292-502 (509)
21 KOG0124|consensus 99.9 1.1E-23 2.5E-28 192.5 11.4 166 16-181 113-292 (544)
22 KOG0127|consensus 99.9 3.7E-23 8E-28 197.6 14.6 165 16-181 117-380 (678)
23 KOG0145|consensus 99.9 5.7E-22 1.2E-26 174.2 12.6 168 12-179 123-358 (360)
24 TIGR01622 SF-CC1 splicing fact 99.9 5.8E-21 1.3E-25 189.8 17.9 160 16-179 186-448 (457)
25 KOG0123|consensus 99.9 2.4E-21 5.1E-26 185.6 14.0 154 17-183 2-157 (369)
26 KOG0148|consensus 99.9 2.3E-21 5E-26 171.4 10.8 137 12-182 2-145 (321)
27 KOG0146|consensus 99.8 7.4E-21 1.6E-25 167.8 9.7 168 14-182 17-368 (371)
28 KOG0147|consensus 99.8 1.6E-21 3.5E-26 187.2 5.7 172 10-181 173-360 (549)
29 KOG0110|consensus 99.8 1.1E-20 2.4E-25 185.9 10.4 165 16-180 515-694 (725)
30 KOG0144|consensus 99.8 1.1E-20 2.5E-25 176.3 8.6 168 13-181 121-506 (510)
31 PLN03134 glycine-rich RNA-bind 99.8 4.7E-19 1E-23 148.7 13.6 86 97-182 31-117 (144)
32 KOG0105|consensus 99.8 1.7E-18 3.8E-23 145.3 14.1 141 13-163 3-171 (241)
33 KOG4211|consensus 99.8 6.9E-18 1.5E-22 160.5 18.1 165 12-179 6-182 (510)
34 KOG0123|consensus 99.8 2.3E-18 5E-23 165.1 12.5 161 15-179 75-246 (369)
35 TIGR01645 half-pint poly-U bin 99.8 2.6E-17 5.7E-22 165.3 18.0 80 14-93 202-282 (612)
36 PLN03134 glycine-rich RNA-bind 99.7 3.6E-17 7.7E-22 137.3 10.6 85 11-95 29-114 (144)
37 KOG0149|consensus 99.7 1.7E-16 3.6E-21 138.5 7.6 80 15-94 11-90 (247)
38 KOG4212|consensus 99.7 2.4E-15 5.2E-20 141.0 15.2 161 14-176 42-291 (608)
39 TIGR01648 hnRNP-R-Q heterogene 99.6 4.3E-15 9.2E-20 149.2 14.4 74 14-95 231-307 (578)
40 KOG4206|consensus 99.6 1.4E-14 3E-19 126.2 14.6 157 12-176 5-219 (221)
41 KOG0149|consensus 99.6 6.9E-16 1.5E-20 134.6 6.0 80 99-178 11-90 (247)
42 KOG0106|consensus 99.6 1.6E-15 3.4E-20 133.2 7.0 143 17-175 2-167 (216)
43 KOG0147|consensus 99.6 6E-15 1.3E-19 142.3 9.1 157 18-179 280-528 (549)
44 PF00076 RRM_1: RNA recognitio 99.6 1.1E-14 2.4E-19 106.2 8.4 69 19-88 1-70 (70)
45 KOG0122|consensus 99.6 1.2E-14 2.6E-19 127.4 8.8 86 10-95 183-269 (270)
46 COG0724 RNA-binding proteins ( 99.5 7.6E-14 1.7E-18 127.2 13.9 144 16-159 115-284 (306)
47 TIGR01659 sex-lethal sex-letha 99.5 1.4E-14 3.1E-19 138.2 8.6 83 97-179 104-187 (346)
48 KOG4211|consensus 99.5 7.9E-13 1.7E-17 126.3 18.6 162 12-176 99-355 (510)
49 KOG1548|consensus 99.5 4.8E-13 1E-17 122.6 16.2 166 8-178 126-351 (382)
50 KOG0110|consensus 99.5 1.1E-13 2.4E-18 137.0 12.3 162 12-179 381-598 (725)
51 KOG1457|consensus 99.5 1.2E-13 2.5E-18 119.6 10.8 148 11-162 29-268 (284)
52 PF14259 RRM_6: RNA recognitio 99.5 6.4E-14 1.4E-18 102.6 7.9 69 19-88 1-70 (70)
53 PLN03120 nucleic acid binding 99.5 7.9E-14 1.7E-18 125.6 9.4 79 15-96 3-81 (260)
54 KOG0122|consensus 99.5 5.6E-14 1.2E-18 123.2 8.0 83 97-179 186-269 (270)
55 KOG0129|consensus 99.5 3.5E-13 7.6E-18 129.5 13.9 169 11-180 254-455 (520)
56 KOG0121|consensus 99.5 6.4E-14 1.4E-18 111.3 6.6 81 12-92 32-113 (153)
57 PF00076 RRM_1: RNA recognitio 99.5 8.9E-14 1.9E-18 101.3 6.3 69 103-172 1-70 (70)
58 KOG0113|consensus 99.5 2.3E-13 4.9E-18 122.5 8.7 87 8-94 93-180 (335)
59 KOG0125|consensus 99.4 1.7E-13 3.7E-18 124.7 7.2 96 82-179 77-174 (376)
60 KOG0121|consensus 99.4 2E-13 4.4E-18 108.4 6.6 81 99-179 35-116 (153)
61 KOG0125|consensus 99.4 3.6E-13 7.8E-18 122.6 8.2 90 9-100 89-179 (376)
62 KOG0124|consensus 99.4 1.5E-12 3.3E-17 119.9 12.3 79 14-92 208-287 (544)
63 KOG0105|consensus 99.4 6.5E-13 1.4E-17 111.9 8.8 78 98-178 4-82 (241)
64 PLN03121 nucleic acid binding 99.4 8.1E-13 1.8E-17 117.3 9.4 77 15-94 4-80 (243)
65 KOG4212|consensus 99.4 4.2E-12 9.1E-17 119.5 14.5 70 101-175 537-607 (608)
66 PF14259 RRM_6: RNA recognitio 99.4 4.1E-13 9E-18 98.3 6.2 69 103-172 1-70 (70)
67 PLN03120 nucleic acid binding 99.4 7.3E-13 1.6E-17 119.4 8.6 77 100-179 4-80 (260)
68 KOG4207|consensus 99.4 9.1E-13 2E-17 112.9 8.6 82 100-181 13-95 (256)
69 PLN03213 repressor of silencin 99.4 9.4E-13 2E-17 125.4 8.4 80 12-95 6-88 (759)
70 KOG0113|consensus 99.4 1.7E-12 3.8E-17 116.8 9.3 82 98-179 99-181 (335)
71 KOG0107|consensus 99.4 1.9E-12 4.1E-17 108.4 8.8 79 98-181 8-87 (195)
72 KOG0107|consensus 99.4 7.3E-13 1.6E-17 110.8 6.3 77 14-95 8-85 (195)
73 KOG0111|consensus 99.4 6E-13 1.3E-17 114.9 5.7 86 98-183 8-94 (298)
74 KOG0126|consensus 99.4 9.3E-14 2E-18 116.7 -0.3 83 14-96 33-116 (219)
75 smart00362 RRM_2 RNA recogniti 99.3 5E-12 1.1E-16 91.3 8.6 70 18-89 1-71 (72)
76 KOG0120|consensus 99.3 4.4E-12 9.5E-17 123.9 10.6 169 11-179 284-492 (500)
77 KOG4207|consensus 99.3 1.9E-12 4E-17 111.0 7.0 85 9-93 6-91 (256)
78 KOG1190|consensus 99.3 1.4E-11 3E-16 115.2 12.9 154 16-178 297-490 (492)
79 KOG0117|consensus 99.3 7.8E-12 1.7E-16 118.1 9.6 80 98-177 81-162 (506)
80 smart00360 RRM RNA recognition 99.3 9.8E-12 2.1E-16 89.4 8.0 69 21-89 1-70 (71)
81 KOG0130|consensus 99.3 8.3E-12 1.8E-16 100.2 7.9 84 100-183 72-156 (170)
82 KOG0111|consensus 99.3 2.5E-12 5.5E-17 111.1 5.2 84 13-96 7-91 (298)
83 PLN03213 repressor of silencin 99.3 7.7E-12 1.7E-16 119.3 7.3 77 99-179 9-88 (759)
84 smart00362 RRM_2 RNA recogniti 99.3 2.1E-11 4.5E-16 88.1 7.8 71 102-174 1-72 (72)
85 PLN03121 nucleic acid binding 99.3 1.8E-11 3.9E-16 108.8 8.8 76 100-178 5-80 (243)
86 KOG1365|consensus 99.2 1.4E-11 3.1E-16 114.2 7.8 163 15-179 160-362 (508)
87 KOG0116|consensus 99.2 6.5E-11 1.4E-15 114.4 12.4 81 101-181 289-369 (419)
88 smart00360 RRM RNA recognition 99.2 2.5E-11 5.3E-16 87.3 6.9 70 105-174 1-71 (71)
89 KOG0108|consensus 99.2 2.9E-11 6.2E-16 117.5 8.6 79 17-95 19-98 (435)
90 KOG1190|consensus 99.2 2.6E-11 5.6E-16 113.4 7.8 157 11-177 23-226 (492)
91 cd00590 RRM RRM (RNA recogniti 99.2 8.3E-11 1.8E-15 85.3 8.6 72 18-90 1-73 (74)
92 KOG1456|consensus 99.2 1.9E-09 4E-14 100.1 19.3 165 5-180 20-200 (494)
93 KOG0131|consensus 99.2 1.6E-11 3.5E-16 103.4 5.1 81 98-178 7-88 (203)
94 KOG4454|consensus 99.2 5.7E-12 1.2E-16 109.0 2.4 137 10-161 3-144 (267)
95 KOG0130|consensus 99.2 2.9E-11 6.3E-16 97.0 6.0 83 13-95 69-152 (170)
96 KOG0126|consensus 99.2 1.8E-12 4E-17 109.0 -1.5 79 99-177 34-113 (219)
97 KOG0114|consensus 99.2 1.2E-10 2.6E-15 89.4 8.3 81 9-92 11-92 (124)
98 COG0724 RNA-binding proteins ( 99.2 8.8E-11 1.9E-15 106.9 8.6 79 100-178 115-194 (306)
99 KOG0108|consensus 99.2 5.8E-11 1.3E-15 115.4 7.4 82 101-182 19-101 (435)
100 cd00590 RRM RRM (RNA recogniti 99.2 1.7E-10 3.7E-15 83.7 8.2 73 102-175 1-74 (74)
101 KOG4205|consensus 99.2 3.4E-11 7.3E-16 112.3 5.5 113 15-127 96-214 (311)
102 KOG0120|consensus 99.1 8.3E-11 1.8E-15 115.0 7.6 162 13-180 172-370 (500)
103 KOG4210|consensus 99.1 1E-10 2.2E-15 108.7 7.7 169 14-182 86-267 (285)
104 KOG0128|consensus 99.1 7E-12 1.5E-16 126.5 -3.1 150 14-179 665-815 (881)
105 KOG0114|consensus 99.1 4.1E-10 8.8E-15 86.5 7.2 77 100-179 18-95 (124)
106 smart00361 RRM_1 RNA recogniti 99.1 6.2E-10 1.3E-14 81.7 7.3 60 30-89 2-69 (70)
107 KOG0109|consensus 99.0 2.3E-10 5E-15 102.9 5.0 71 101-179 3-74 (346)
108 smart00361 RRM_1 RNA recogniti 99.0 6.6E-10 1.4E-14 81.5 6.4 60 114-173 2-69 (70)
109 KOG0132|consensus 99.0 4.9E-10 1.1E-14 112.2 6.7 101 15-122 420-528 (894)
110 KOG0415|consensus 99.0 7.2E-10 1.6E-14 102.1 6.6 84 96-179 235-319 (479)
111 KOG0415|consensus 99.0 6.8E-10 1.5E-14 102.3 5.7 83 12-94 235-318 (479)
112 PF13893 RRM_5: RNA recognitio 99.0 1.3E-09 2.8E-14 76.2 5.7 55 117-176 1-56 (56)
113 KOG0153|consensus 98.9 1.7E-09 3.7E-14 99.6 7.3 77 96-178 224-302 (377)
114 KOG0146|consensus 98.9 1.5E-09 3.3E-14 96.6 6.2 85 12-96 281-366 (371)
115 KOG0116|consensus 98.9 8.5E-09 1.8E-13 99.8 11.9 82 11-92 283-364 (419)
116 PF13893 RRM_5: RNA recognitio 98.9 3.1E-09 6.7E-14 74.2 6.4 55 33-92 1-56 (56)
117 KOG0226|consensus 98.9 7.4E-10 1.6E-14 98.0 3.5 166 14-180 94-271 (290)
118 KOG0112|consensus 98.9 9.8E-10 2.1E-14 111.7 3.2 162 11-180 367-532 (975)
119 KOG0153|consensus 98.9 6.5E-09 1.4E-13 95.8 7.6 80 9-94 221-302 (377)
120 KOG1456|consensus 98.8 6.4E-08 1.4E-12 90.0 13.5 151 11-168 282-474 (494)
121 KOG1365|consensus 98.8 4.6E-09 1E-13 97.8 5.5 165 12-177 56-241 (508)
122 KOG0132|consensus 98.8 6.7E-09 1.5E-13 104.3 6.8 76 100-181 421-497 (894)
123 KOG4849|consensus 98.7 3.1E-07 6.7E-12 84.8 14.2 76 99-174 79-157 (498)
124 KOG4208|consensus 98.7 3.3E-08 7.1E-13 85.3 7.4 82 10-91 43-126 (214)
125 KOG4661|consensus 98.7 2.4E-08 5.2E-13 97.2 7.2 81 100-180 405-486 (940)
126 KOG4661|consensus 98.7 3.6E-08 7.8E-13 95.9 7.3 81 14-94 403-484 (940)
127 KOG4208|consensus 98.6 7.1E-08 1.5E-12 83.3 5.6 82 98-179 47-130 (214)
128 KOG4206|consensus 98.6 9.5E-08 2.1E-12 83.7 6.2 81 99-182 8-93 (221)
129 KOG4209|consensus 98.6 7.3E-08 1.6E-12 86.9 5.3 83 11-93 96-178 (231)
130 KOG2193|consensus 98.6 1.4E-08 3.1E-13 95.6 0.7 152 17-181 2-159 (584)
131 KOG0533|consensus 98.4 5.4E-07 1.2E-11 81.2 7.5 81 13-94 80-161 (243)
132 KOG4660|consensus 98.4 2.9E-07 6.3E-12 89.9 6.1 157 10-178 69-249 (549)
133 KOG4307|consensus 98.4 1E-06 2.2E-11 87.9 9.6 75 101-175 868-943 (944)
134 KOG0226|consensus 98.4 5.1E-07 1.1E-11 80.3 5.4 85 11-95 185-270 (290)
135 KOG4209|consensus 98.4 7.2E-07 1.6E-11 80.4 6.4 84 96-179 97-180 (231)
136 KOG4307|consensus 98.4 9.1E-07 2E-11 88.2 7.3 162 13-176 308-511 (944)
137 KOG0533|consensus 98.4 1.1E-06 2.5E-11 79.1 7.3 83 98-181 81-164 (243)
138 PF04059 RRM_2: RNA recognitio 98.3 4.8E-06 1.1E-10 64.6 8.2 67 17-87 2-70 (97)
139 KOG4676|consensus 98.2 6.9E-07 1.5E-11 83.7 3.1 148 16-167 7-214 (479)
140 KOG0128|consensus 98.2 1.4E-07 3E-12 96.0 -2.0 155 14-168 569-735 (881)
141 KOG0106|consensus 98.2 2.2E-06 4.7E-11 75.8 5.5 72 101-180 2-74 (216)
142 KOG1995|consensus 98.2 7.4E-06 1.6E-10 76.4 8.8 85 97-181 63-156 (351)
143 KOG1457|consensus 98.1 1.4E-05 3E-10 70.0 9.0 86 99-184 33-123 (284)
144 KOG1995|consensus 98.1 3.8E-06 8.1E-11 78.4 5.8 89 8-96 58-155 (351)
145 KOG4660|consensus 98.1 2.3E-06 5E-11 83.7 4.0 71 97-172 72-143 (549)
146 KOG1548|consensus 98.1 5.4E-06 1.2E-10 76.8 6.1 81 99-180 133-222 (382)
147 PF04059 RRM_2: RNA recognitio 98.1 1.8E-05 3.8E-10 61.5 7.5 79 101-179 2-87 (97)
148 KOG4454|consensus 98.0 2.3E-06 4.9E-11 74.6 1.1 76 98-175 7-83 (267)
149 KOG0151|consensus 97.9 1.4E-05 3.1E-10 80.1 5.4 83 98-180 172-258 (877)
150 KOG0151|consensus 97.8 4E-05 8.6E-10 77.0 7.5 82 12-93 170-255 (877)
151 PF08777 RRM_3: RNA binding mo 97.7 2.1E-05 4.6E-10 62.3 2.7 70 101-176 2-77 (105)
152 KOG0129|consensus 97.7 0.0001 2.3E-09 71.8 7.7 68 10-77 364-432 (520)
153 KOG4210|consensus 97.6 5.2E-05 1.1E-09 70.6 4.3 86 10-95 178-264 (285)
154 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00022 4.9E-09 49.0 5.4 53 16-75 1-53 (53)
155 PF08777 RRM_3: RNA binding mo 97.5 0.00027 5.9E-09 55.9 5.9 55 17-77 2-56 (105)
156 PF11608 Limkain-b1: Limkain b 97.3 0.0006 1.3E-08 50.9 5.7 68 17-94 3-76 (90)
157 KOG1855|consensus 97.3 0.00028 6E-09 67.4 4.9 70 10-79 225-307 (484)
158 KOG4849|consensus 97.3 0.0002 4.4E-09 66.5 3.6 72 16-87 80-154 (498)
159 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.0012 2.7E-08 51.5 6.9 79 13-92 3-89 (100)
160 PF11608 Limkain-b1: Limkain b 97.2 0.00077 1.7E-08 50.4 5.4 69 101-179 3-77 (90)
161 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.00061 1.3E-08 46.9 4.5 52 101-159 2-53 (53)
162 KOG1855|consensus 97.0 0.00067 1.5E-08 64.8 3.8 66 98-163 229-307 (484)
163 KOG2314|consensus 96.8 0.0039 8.4E-08 61.6 7.3 72 13-89 55-132 (698)
164 KOG3152|consensus 96.7 0.0011 2.4E-08 59.5 2.9 72 15-86 73-157 (278)
165 COG5175 MOT2 Transcriptional r 96.7 0.0021 4.5E-08 59.7 4.6 107 15-121 113-241 (480)
166 PF05172 Nup35_RRM: Nup53/35/4 96.6 0.011 2.4E-07 46.2 7.5 78 100-178 6-91 (100)
167 COG5175 MOT2 Transcriptional r 96.6 0.0032 7E-08 58.5 5.0 80 100-179 114-203 (480)
168 PF08675 RNA_bind: RNA binding 96.6 0.011 2.3E-07 44.2 6.8 57 12-77 5-61 (87)
169 KOG2314|consensus 96.2 0.013 2.9E-07 58.0 7.1 76 99-175 57-140 (698)
170 PF10309 DUF2414: Protein of u 96.1 0.032 7E-07 39.5 6.9 55 15-77 4-61 (62)
171 KOG0115|consensus 96.1 0.011 2.5E-07 53.1 5.7 61 17-78 32-92 (275)
172 PF08952 DUF1866: Domain of un 96.1 0.014 3E-07 48.5 5.8 56 31-94 51-106 (146)
173 KOG3152|consensus 96.0 0.0016 3.5E-08 58.4 -0.3 72 99-170 73-157 (278)
174 KOG4676|consensus 95.9 0.015 3.3E-07 55.2 5.9 77 101-177 8-87 (479)
175 PF08952 DUF1866: Domain of un 95.7 0.035 7.6E-07 46.2 6.6 75 97-179 24-107 (146)
176 KOG2202|consensus 95.6 0.0079 1.7E-07 54.1 2.3 62 115-177 83-146 (260)
177 KOG2202|consensus 95.4 0.0066 1.4E-07 54.6 1.2 61 31-92 83-145 (260)
178 KOG2591|consensus 95.3 0.027 5.8E-07 55.8 5.1 71 98-175 173-248 (684)
179 PF10309 DUF2414: Protein of u 95.2 0.098 2.1E-06 37.1 6.4 55 100-162 5-62 (62)
180 KOG0115|consensus 95.2 0.024 5.3E-07 51.0 4.1 94 78-178 15-113 (275)
181 PF07292 NID: Nmi/IFP 35 domai 95.2 0.021 4.6E-07 43.4 3.2 62 61-122 1-74 (88)
182 KOG1996|consensus 95.0 0.046 9.9E-07 50.2 5.4 65 114-178 300-366 (378)
183 KOG2135|consensus 94.7 0.016 3.4E-07 56.4 1.8 80 10-95 366-446 (526)
184 PF15023 DUF4523: Protein of u 94.4 0.14 2.9E-06 42.4 6.2 73 13-92 83-159 (166)
185 PF07576 BRAP2: BRCA1-associat 93.9 0.69 1.5E-05 36.8 9.3 66 16-87 13-79 (110)
186 KOG2416|consensus 93.8 0.1 2.3E-06 52.2 5.3 76 98-179 442-522 (718)
187 PF15023 DUF4523: Protein of u 93.7 0.36 7.8E-06 39.9 7.5 74 97-177 83-160 (166)
188 KOG2193|consensus 93.7 0.054 1.2E-06 52.1 3.1 75 101-181 2-78 (584)
189 KOG1996|consensus 93.4 0.21 4.5E-06 46.0 6.2 61 30-90 300-362 (378)
190 KOG2135|consensus 93.3 0.061 1.3E-06 52.4 2.7 72 102-179 374-446 (526)
191 KOG2591|consensus 93.0 0.25 5.5E-06 49.2 6.5 71 11-88 170-245 (684)
192 PF03467 Smg4_UPF3: Smg-4/UPF3 92.2 0.2 4.3E-06 43.4 4.3 66 12-77 3-74 (176)
193 KOG0112|consensus 91.7 0.21 4.5E-06 52.4 4.3 75 12-92 451-528 (975)
194 PF08675 RNA_bind: RNA binding 91.3 0.42 9.2E-06 35.9 4.5 55 100-163 9-63 (87)
195 PRK11634 ATP-dependent RNA hel 91.2 4.2 9.1E-05 42.5 13.5 63 109-180 496-564 (629)
196 KOG0804|consensus 91.0 0.71 1.5E-05 45.0 6.9 65 11-77 69-134 (493)
197 KOG4285|consensus 90.9 0.38 8.1E-06 44.5 4.7 67 18-91 199-266 (350)
198 PF14111 DUF4283: Domain of un 90.7 0.36 7.9E-06 40.2 4.3 114 17-135 16-140 (153)
199 KOG2068|consensus 90.0 0.19 4.1E-06 47.2 2.0 80 14-93 75-161 (327)
200 KOG2416|consensus 89.5 0.24 5.2E-06 49.7 2.5 62 10-77 438-500 (718)
201 PF10567 Nab6_mRNP_bdg: RNA-re 89.5 3.8 8.2E-05 38.0 9.9 153 10-163 9-212 (309)
202 KOG2068|consensus 88.0 0.11 2.4E-06 48.7 -0.9 79 101-179 78-163 (327)
203 KOG2891|consensus 85.2 2.7 5.8E-05 38.6 6.4 36 100-135 149-196 (445)
204 KOG4285|consensus 84.3 1.9 4.2E-05 40.0 5.1 73 103-182 200-273 (350)
205 PF03467 Smg4_UPF3: Smg-4/UPF3 83.7 0.75 1.6E-05 39.8 2.2 65 99-163 6-76 (176)
206 PF04847 Calcipressin: Calcipr 82.6 3 6.5E-05 36.4 5.5 61 113-179 8-71 (184)
207 KOG2253|consensus 81.9 0.99 2.1E-05 46.1 2.5 70 12-90 36-106 (668)
208 PF07576 BRAP2: BRCA1-associat 81.8 5.8 0.00013 31.6 6.4 61 101-163 14-75 (110)
209 PF03880 DbpA: DbpA RNA bindin 80.3 8.9 0.00019 27.9 6.6 66 18-92 2-74 (74)
210 KOG2253|consensus 79.3 1.3 2.7E-05 45.3 2.2 70 97-175 37-107 (668)
211 PF11767 SET_assoc: Histone ly 79.2 8.7 0.00019 27.6 5.9 45 26-79 10-54 (66)
212 PF03880 DbpA: DbpA RNA bindin 78.2 7.8 0.00017 28.2 5.7 58 110-176 11-74 (74)
213 PF04847 Calcipressin: Calcipr 78.1 4.7 0.0001 35.2 5.2 58 29-92 8-68 (184)
214 KOG2318|consensus 74.2 12 0.00026 37.9 7.3 129 13-178 171-307 (650)
215 KOG3973|consensus 73.7 5.3 0.00011 37.9 4.5 20 18-37 151-170 (465)
216 KOG4213|consensus 73.7 3 6.5E-05 35.9 2.7 63 16-83 111-175 (205)
217 KOG4574|consensus 73.3 1.8 3.8E-05 45.5 1.4 54 18-77 300-353 (1007)
218 KOG4574|consensus 73.2 2.9 6.3E-05 44.0 3.0 75 101-181 299-376 (1007)
219 KOG0804|consensus 73.1 8.5 0.00018 37.8 5.9 66 100-167 74-141 (493)
220 KOG4410|consensus 73.0 16 0.00034 33.9 7.2 59 14-77 328-393 (396)
221 PF11767 SET_assoc: Histone ly 72.1 14 0.00031 26.4 5.5 52 111-171 11-63 (66)
222 KOG4483|consensus 71.1 11 0.00023 36.5 6.0 68 13-87 388-456 (528)
223 TIGR02542 B_forsyth_147 Bacter 64.3 31 0.00068 27.5 6.4 105 24-152 11-129 (145)
224 COG5193 LHP1 La protein, small 61.2 3.6 7.8E-05 39.7 0.8 64 13-76 171-244 (438)
225 PF10567 Nab6_mRNP_bdg: RNA-re 58.7 12 0.00026 34.8 3.7 80 99-178 14-107 (309)
226 KOG4019|consensus 56.5 17 0.00037 31.4 4.0 75 100-180 10-91 (193)
227 COG5594 Uncharacterized integr 53.9 7.2 0.00016 41.2 1.6 30 12-41 204-234 (827)
228 PF03468 XS: XS domain; Inter 52.1 24 0.00052 28.3 4.1 37 29-68 30-66 (116)
229 PF07530 PRE_C2HC: Associated 51.3 20 0.00044 25.8 3.2 62 115-179 2-65 (68)
230 PRK14548 50S ribosomal protein 49.0 47 0.001 25.0 4.9 56 19-77 23-80 (84)
231 PF10915 DUF2709: Protein of u 48.6 49 0.0011 28.9 5.5 74 42-125 36-117 (238)
232 KOG3875|consensus 47.4 99 0.0021 29.2 7.7 8 234-241 79-86 (362)
233 PF07292 NID: Nmi/IFP 35 domai 44.5 40 0.00086 25.7 4.0 30 145-174 1-32 (88)
234 smart00596 PRE_C2HC PRE_C2HC d 43.8 22 0.00048 25.7 2.3 62 115-179 2-65 (69)
235 KOG2891|consensus 42.4 35 0.00076 31.5 4.0 38 13-50 146-195 (445)
236 KOG4410|consensus 41.1 52 0.0011 30.6 4.8 47 101-152 331-377 (396)
237 KOG4483|consensus 39.5 78 0.0017 30.9 5.9 62 99-167 390-452 (528)
238 KOG4008|consensus 37.9 26 0.00057 31.6 2.4 36 11-46 35-70 (261)
239 PF03468 XS: XS domain; Inter 37.8 25 0.00053 28.2 2.1 46 112-160 29-75 (116)
240 PF15513 DUF4651: Domain of un 37.2 79 0.0017 22.4 4.2 19 30-48 8-26 (62)
241 PF14893 PNMA: PNMA 36.6 24 0.00053 33.7 2.2 27 13-39 15-41 (331)
242 PF07530 PRE_C2HC: Associated 36.5 44 0.00095 24.0 3.0 62 31-94 2-64 (68)
243 PF02714 DUF221: Domain of unk 35.7 50 0.0011 31.0 4.2 57 61-123 1-57 (325)
244 KOG2854|consensus 34.6 1.3E+02 0.0028 28.7 6.6 42 15-56 80-121 (343)
245 PTZ00110 helicase; Provisional 30.0 1.5E+02 0.0032 30.4 6.7 12 234-245 53-64 (545)
246 KOG4213|consensus 29.9 62 0.0013 28.1 3.3 59 100-163 111-171 (205)
247 TIGR03636 L23_arch archaeal ri 28.7 1.6E+02 0.0035 21.7 5.0 55 19-76 16-72 (77)
248 KOG1175|consensus 28.4 85 0.0018 32.8 4.6 90 27-124 507-599 (626)
249 KOG3424|consensus 27.7 1.7E+02 0.0036 23.6 5.1 48 26-74 33-85 (132)
250 COG5638 Uncharacterized conser 27.6 3.2E+02 0.0069 26.9 7.9 41 11-51 141-186 (622)
251 PF00403 HMA: Heavy-metal-asso 27.5 2E+02 0.0043 19.4 7.1 55 18-78 1-59 (62)
252 PF11411 DNA_ligase_IV: DNA li 26.8 48 0.001 20.7 1.6 16 26-41 19-34 (36)
253 PRK10590 ATP-dependent RNA hel 26.7 3.5E+02 0.0075 26.9 8.7 6 142-147 342-347 (456)
254 PTZ00191 60S ribosomal protein 25.7 1.7E+02 0.0037 24.4 5.1 62 15-79 80-143 (145)
255 cd00874 RNA_Cyclase_Class_II R 24.1 1.9E+02 0.0041 27.6 5.9 111 23-149 119-237 (326)
256 PRK06958 single-stranded DNA-b 24.1 4.1E+02 0.0089 23.1 7.4 9 17-25 6-14 (182)
257 TIGR03636 L23_arch archaeal ri 22.7 1.4E+02 0.003 22.1 3.7 57 103-162 16-74 (77)
258 PF15407 Spo7_2_N: Sporulation 21.9 41 0.00089 24.2 0.7 26 13-38 24-49 (67)
259 PRK14548 50S ribosomal protein 21.9 1.3E+02 0.0029 22.5 3.5 57 104-163 24-82 (84)
260 PRK11901 hypothetical protein; 21.5 1.3E+02 0.0027 28.7 4.0 57 104-162 246-304 (327)
261 COG5193 LHP1 La protein, small 20.6 33 0.00072 33.4 -0.0 61 100-160 174-244 (438)
262 PRK01178 rps24e 30S ribosomal 20.3 2.6E+02 0.0056 21.7 4.9 47 27-74 30-81 (99)
263 KOG2295|consensus 20.1 18 0.00038 36.6 -2.0 63 14-76 229-294 (648)
264 cd04908 ACT_Bt0572_1 N-termina 20.0 3E+02 0.0065 18.8 6.7 47 29-79 14-61 (66)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=3.9e-36 Score=285.79 Aligned_cols=173 Identities=20% Similarity=0.332 Sum_probs=156.0
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCc
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDP 89 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v 89 (348)
.+....++|||+|||+++|+++|+++|++||+|++|+|++|+.|+++||||||+|.++++|++||+ +++..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 455678999999999999999999999999999999999999999999999999999999999997 5678999999999
Q ss_pred cccccccc-CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeC
Q psy1757 90 KRVTKRVN-PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVIC 167 (348)
Q Consensus 90 ~~a~~~~~-~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~ 167 (348)
.++..... ..+++|||+|||+++||++|+++|++||.|+.|+|++++.++++||||||+|++.++|++||+.++ ..+.
T Consensus 182 ~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~ 261 (346)
T TIGR01659 182 SYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPE 261 (346)
T ss_pred ecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccC
Confidence 98865432 346789999999999999999999999999999999999999999999999999999999999986 6665
Q ss_pred C--eEEEEEEcccCCCCC
Q psy1757 168 G--KEVDVKRVKFNPETM 183 (348)
Q Consensus 168 G--~~i~v~~a~~~~~~~ 183 (348)
+ ++|+|++++......
T Consensus 262 g~~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 262 GGSQPLTVRLAEEHGKAK 279 (346)
T ss_pred CCceeEEEEECCcccccc
Confidence 5 789999988765543
No 2
>KOG0148|consensus
Probab=100.00 E-value=2.3e-32 Score=240.73 Aligned_cols=164 Identities=24% Similarity=0.510 Sum_probs=150.8
Q ss_pred CCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCccc
Q psy1757 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDPKR 91 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v~~ 91 (348)
....-.|||+.|..+++.|+|++.|.+||+|.+++|++|..|+++|||+||.|.++++|+.||.. ++++|..|.|+..|
T Consensus 59 ~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNW 138 (321)
T KOG0148|consen 59 SNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNW 138 (321)
T ss_pred cccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccc
Confidence 34456799999999999999999999999999999999999999999999999999999999985 56899999999999
Q ss_pred ccccc-----------------cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHH
Q psy1757 92 VTKRV-----------------NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNV 154 (348)
Q Consensus 92 a~~~~-----------------~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~ 154 (348)
+.++. .+.+|+|||+||+..++|++|++.|+.||.|.+|+|+++ +||+||.|++.|+
T Consensus 139 ATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEa 212 (321)
T KOG0148|consen 139 ATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEA 212 (321)
T ss_pred cccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhh
Confidence 98763 346799999999999999999999999999999999987 5799999999999
Q ss_pred HHHHHHcCC-CeeCCeEEEEEEcccCCCC
Q psy1757 155 ADQVLKNPK-QVICGKEVDVKRVKFNPET 182 (348)
Q Consensus 155 A~~Al~~~~-~~i~G~~i~v~~a~~~~~~ 182 (348)
|.+||..+| .+|.|..++|.|-+.....
T Consensus 213 AahAIv~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 213 AAHAIVQMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred HHHHHHHhcCceeCceEEEEeccccCCCC
Confidence 999999985 9999999999998876553
No 3
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=1.8e-30 Score=259.19 Aligned_cols=164 Identities=21% Similarity=0.371 Sum_probs=135.5
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCC-cccC-Ceec
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGD-HYIG-NKKI 87 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~-~~~~-gr~i 87 (348)
.......++|||+|||++++|++|+++|++||+|.+|+|++| .++++||||||+|.+.|+|++||+.++ .++. ++.|
T Consensus 52 ~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l 130 (578)
T TIGR01648 52 GVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLL 130 (578)
T ss_pred CCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccc
Confidence 344556799999999999999999999999999999999999 699999999999999999999998643 3442 3333
Q ss_pred Cccccc--------------------------------------------------------------------------
Q psy1757 88 DPKRVT-------------------------------------------------------------------------- 93 (348)
Q Consensus 88 ~v~~a~-------------------------------------------------------------------------- 93 (348)
.+..+.
T Consensus 131 ~V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~ 210 (578)
T TIGR01648 131 GVCISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLW 210 (578)
T ss_pred cccccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEec
Confidence 221110
Q ss_pred ----------cccc------CCCceEEEcCCCCCCCHHHHHHHHhhc--CCccccccCCCCCCCccceEEEEEECCHHHH
Q psy1757 94 ----------KRVN------PLKCKIFVGGLTTEITEQDVRDYFSQY--GSITEFQQPFDKSKNMKKGFCFISFDDQNVA 155 (348)
Q Consensus 94 ----------~~~~------~~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A 155 (348)
+... ...++|||+||++++++++|+++|++| |.|++|++++ +||||+|++.++|
T Consensus 211 Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A 282 (578)
T TIGR01648 211 GHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDA 282 (578)
T ss_pred CceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHH
Confidence 0000 012679999999999999999999999 9999998753 4999999999999
Q ss_pred HHHHHcCC-CeeCCeEEEEEEcccCCCC
Q psy1757 156 DQVLKNPK-QVICGKEVDVKRVKFNPET 182 (348)
Q Consensus 156 ~~Al~~~~-~~i~G~~i~v~~a~~~~~~ 182 (348)
++|++.++ .+|+|+.|+|+|+++....
T Consensus 283 ~kAi~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 283 VKAMDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HHHHHHhCCCEECCEEEEEEEccCCCcc
Confidence 99999885 8999999999999987543
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=1.2e-30 Score=260.79 Aligned_cols=169 Identities=22% Similarity=0.429 Sum_probs=153.7
Q ss_pred CCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCccc
Q psy1757 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKR 91 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~ 91 (348)
....++|||+|||+++++++|+++|++||+|.+|+|++|+.|+++||||||+|.+.++|++||+ +++..+.|+.|+|.+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 3467899999999999999999999999999999999999999999999999999999999998 467899999999976
Q ss_pred ccccc------------cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHH
Q psy1757 92 VTKRV------------NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVL 159 (348)
Q Consensus 92 a~~~~------------~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al 159 (348)
..... ....++|||+||+.++++++|+++|+.||.|++++|.++..++++||||||+|.+.++|.+||
T Consensus 184 p~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI 263 (612)
T TIGR01645 184 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 263 (612)
T ss_pred cccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHH
Confidence 54321 123478999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCC-CeeCCeEEEEEEcccCCC
Q psy1757 160 KNPK-QVICGKEVDVKRVKFNPE 181 (348)
Q Consensus 160 ~~~~-~~i~G~~i~v~~a~~~~~ 181 (348)
+.+| ..|+|+.|+|.++...+.
T Consensus 264 ~amNg~elgGr~LrV~kAi~pP~ 286 (612)
T TIGR01645 264 ASMNLFDLGGQYLRVGKCVTPPD 286 (612)
T ss_pred HHhCCCeeCCeEEEEEecCCCcc
Confidence 9996 889999999999987654
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=9.4e-30 Score=244.39 Aligned_cols=166 Identities=26% Similarity=0.437 Sum_probs=151.0
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCccccc
Q psy1757 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKRVT 93 (348)
Q Consensus 15 ~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~a~ 93 (348)
...+|||+|||.++|+++|+++|++||+|.+|+|++|+.+++++|||||+|.+.++|++||+ +++..+.|+.|.|+++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 57899999999999999999999999999999999999999999999999999999999998 46679999999999887
Q ss_pred ccccC-CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCC--e
Q psy1757 94 KRVNP-LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICG--K 169 (348)
Q Consensus 94 ~~~~~-~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G--~ 169 (348)
+.... ..++|||+|||..+++++|+++|++||.|+.++++.+..++.++|||||+|++.++|++|++.++ ..+.+ .
T Consensus 82 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~ 161 (352)
T TIGR01661 82 PSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTE 161 (352)
T ss_pred ccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCce
Confidence 65543 46789999999999999999999999999999999988888999999999999999999999885 55655 6
Q ss_pred EEEEEEcccCC
Q psy1757 170 EVDVKRVKFNP 180 (348)
Q Consensus 170 ~i~v~~a~~~~ 180 (348)
+|.|.++....
T Consensus 162 ~i~v~~a~~~~ 172 (352)
T TIGR01661 162 PITVKFANNPS 172 (352)
T ss_pred eEEEEECCCCC
Confidence 78888887654
No 6
>KOG0144|consensus
Probab=99.97 E-value=6.3e-30 Score=237.80 Aligned_cols=174 Identities=29% Similarity=0.491 Sum_probs=152.0
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CC-cccCC--e
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GD-HYIGN--K 85 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~-~~~~g--r 85 (348)
+..+.+.-+||||.||+.++|+||+++|++||.|.+|.|++|+.|+.++|||||+|.+.++|.+|+.+ ++ +.|.| .
T Consensus 28 d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~ 107 (510)
T KOG0144|consen 28 DNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHH 107 (510)
T ss_pred CCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCc
Confidence 34446678999999999999999999999999999999999999999999999999999999999986 33 35554 4
Q ss_pred ecCcccccccccC--CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC
Q psy1757 86 KIDPKRVTKRVNP--LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK 163 (348)
Q Consensus 86 ~i~v~~a~~~~~~--~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~ 163 (348)
.|.++.++..... .+++|||+.|+..++|.+++++|++||.|++|.|.+|. .+.+||||||+|.+.|.|..||+.++
T Consensus 108 pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~n 186 (510)
T KOG0144|consen 108 PVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALN 186 (510)
T ss_pred ceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhc
Confidence 6677777655444 38999999999999999999999999999999999986 47899999999999999999999996
Q ss_pred --CeeCC--eEEEEEEcccCCCCCC
Q psy1757 164 --QVICG--KEVDVKRVKFNPETMG 184 (348)
Q Consensus 164 --~~i~G--~~i~v~~a~~~~~~~~ 184 (348)
..+.| .+|.|+|+.++.++..
T Consensus 187 g~~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 187 GTQTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred cceeeccCCCceEEEecccCCCchH
Confidence 45655 6799999999877543
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.96 E-value=5.7e-29 Score=247.16 Aligned_cols=168 Identities=27% Similarity=0.431 Sum_probs=153.4
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCccc
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKR 91 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~ 91 (348)
.+.+.++|||+|||.++++++|+++|++||.|.+|+|+.|+.+++++|||||+|.+.++|++||.+++..+.|+.|.++.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQS 164 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEee
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred ccccc-------------cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHH
Q psy1757 92 VTKRV-------------NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQV 158 (348)
Q Consensus 92 a~~~~-------------~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~A 158 (348)
+.... .+..++|||+||+..+++++|+++|++||.|+.|.|+.+..++.++|||||+|.+.++|.+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 53221 12258899999999999999999999999999999999998899999999999999999999
Q ss_pred HHcCC-CeeCCeEEEEEEcccC
Q psy1757 159 LKNPK-QVICGKEVDVKRVKFN 179 (348)
Q Consensus 159 l~~~~-~~i~G~~i~v~~a~~~ 179 (348)
++.++ ..|.|++|.|.++...
T Consensus 245 ~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 245 LEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHhcCCcEECCEEEEEEEccCC
Confidence 99885 8899999999998744
No 8
>KOG0117|consensus
Probab=99.96 E-value=1.7e-28 Score=229.21 Aligned_cols=168 Identities=22% Similarity=0.441 Sum_probs=145.1
Q ss_pred CCCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccC-Ce
Q psy1757 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIG-NK 85 (348)
Q Consensus 8 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~-gr 85 (348)
|+.+.....+.||||.||.|+.|++|.-+|++.|+|-+++||+|+.+|.+||||||+|+++++|+.||+. ++.+|. ||
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 4556667789999999999999999999999999999999999999999999999999999999999986 455553 66
Q ss_pred ecCcccccccc---------------------------------------------------------------------
Q psy1757 86 KIDPKRVTKRV--------------------------------------------------------------------- 96 (348)
Q Consensus 86 ~i~v~~a~~~~--------------------------------------------------------------------- 96 (348)
.|.|..+..+.
T Consensus 155 ~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~k 234 (506)
T KOG0117|consen 155 LLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIK 234 (506)
T ss_pred EeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCcee
Confidence 66554432210
Q ss_pred ---------------c------CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHH
Q psy1757 97 ---------------N------PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVA 155 (348)
Q Consensus 97 ---------------~------~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A 155 (348)
. .+-+.|||.||+.++|||.|+++|++||.|++|+.++| ||||.|.+.++|
T Consensus 235 lwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~da 306 (506)
T KOG0117|consen 235 LWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDA 306 (506)
T ss_pred ecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHH
Confidence 0 01166999999999999999999999999999998876 999999999999
Q ss_pred HHHHHcCC-CeeCCeEEEEEEcccCCCCC
Q psy1757 156 DQVLKNPK-QVICGKEVDVKRVKFNPETM 183 (348)
Q Consensus 156 ~~Al~~~~-~~i~G~~i~v~~a~~~~~~~ 183 (348)
.+|++.++ .+|+|..|+|.+|+|....+
T Consensus 307 vkAm~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 307 VKAMKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred HHHHHHhcCceecCceEEEEecCChhhhc
Confidence 99999996 89999999999999986644
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=1.6e-28 Score=235.92 Aligned_cols=168 Identities=20% Similarity=0.325 Sum_probs=145.9
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCC--eecCcc
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGN--KKIDPK 90 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~g--r~i~v~ 90 (348)
...++|||+|||.++++++|+++|++||.|..++|+.+..++.++|||||+|++.++|++||+. ++..+.+ +.|.+.
T Consensus 87 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~ 166 (352)
T TIGR01661 87 IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVK 166 (352)
T ss_pred cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 3567899999999999999999999999999999999988899999999999999999999985 4455554 445555
Q ss_pred cccccc--------------------------------------------------------------------------
Q psy1757 91 RVTKRV-------------------------------------------------------------------------- 96 (348)
Q Consensus 91 ~a~~~~-------------------------------------------------------------------------- 96 (348)
++....
T Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (352)
T TIGR01661 167 FANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASP 246 (352)
T ss_pred ECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCC
Confidence 442111
Q ss_pred -------------------cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHH
Q psy1757 97 -------------------NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQ 157 (348)
Q Consensus 97 -------------------~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~ 157 (348)
....++|||+|||+++++++|+++|++||.|++|+|++|..++.+||||||+|.+.++|.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 247 PATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred ccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 0001259999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCC-CeeCCeEEEEEEcccCCC
Q psy1757 158 VLKNPK-QVICGKEVDVKRVKFNPE 181 (348)
Q Consensus 158 Al~~~~-~~i~G~~i~v~~a~~~~~ 181 (348)
|++.++ ..|+|+.|+|.|+..+..
T Consensus 327 Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 327 AILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHhCCCEECCeEEEEEEccCCCC
Confidence 999885 899999999999988764
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=5.6e-27 Score=238.62 Aligned_cols=167 Identities=26% Similarity=0.511 Sum_probs=148.5
Q ss_pred CCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccC----Ceec
Q psy1757 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIG----NKKI 87 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~----gr~i 87 (348)
....++|||+|||.++|+++|+++|++||+|++|.|+++. ++.++|||||+|++.++|.+|++. ++..+. ++.|
T Consensus 175 ~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l 253 (562)
T TIGR01628 175 LKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKL 253 (562)
T ss_pred ccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceee
Confidence 3456789999999999999999999999999999999985 789999999999999999999985 566777 8888
Q ss_pred Ccccccccc-------------------cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEE
Q psy1757 88 DPKRVTKRV-------------------NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFIS 148 (348)
Q Consensus 88 ~v~~a~~~~-------------------~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~ 148 (348)
.+.++..+. ....++|||+||++++++++|+++|++||.|++|+|+.+ .++.++|||||+
T Consensus 254 ~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~ 332 (562)
T TIGR01628 254 YVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVC 332 (562)
T ss_pred EeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEE
Confidence 887664432 123477999999999999999999999999999999998 678999999999
Q ss_pred ECCHHHHHHHHHcCC-CeeCCeEEEEEEcccCCC
Q psy1757 149 FDDQNVADQVLKNPK-QVICGKEVDVKRVKFNPE 181 (348)
Q Consensus 149 F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~~~~~ 181 (348)
|.+.++|++|++.++ ..|+|++|.|.++..+..
T Consensus 333 f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~ 366 (562)
T TIGR01628 333 FSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQ 366 (562)
T ss_pred eCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHH
Confidence 999999999999885 889999999999987754
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=1.2e-27 Score=243.52 Aligned_cols=161 Identities=24% Similarity=0.427 Sum_probs=144.7
Q ss_pred EEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCC-cccCCeecCcccccccc
Q psy1757 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGD-HYIGNKKIDPKRVTKRV 96 (348)
Q Consensus 18 ~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~-~~~~gr~i~v~~a~~~~ 96 (348)
+|||+|||.++||++|+++|++||+|++|+|++|+.|++++|||||+|.+.++|++||+..+ ..+.|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 79999999999999999999999999999999999999999999999999999999998654 57999999999875432
Q ss_pred c---CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEE
Q psy1757 97 N---PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVD 172 (348)
Q Consensus 97 ~---~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~ 172 (348)
. ....+|||+||+.++++++|+++|++||.|+.|+|+.+. +++++|||||+|.+.++|++|++.++ ..++++.|.
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~ 160 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVY 160 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEE
Confidence 2 224679999999999999999999999999999998875 67799999999999999999999985 889999999
Q ss_pred EEEcccC
Q psy1757 173 VKRVKFN 179 (348)
Q Consensus 173 v~~a~~~ 179 (348)
|.....+
T Consensus 161 v~~~~~~ 167 (562)
T TIGR01628 161 VGRFIKK 167 (562)
T ss_pred Eeccccc
Confidence 8765443
No 12
>KOG4205|consensus
Probab=99.95 E-value=3.1e-27 Score=219.09 Aligned_cols=171 Identities=39% Similarity=0.701 Sum_probs=161.4
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCccccc
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVT 93 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~a~ 93 (348)
.+.++|||++|++++|+|.|++.|++||+|.+|.|++|+.+++++||+||+|++.+.+.++|....+.|.++.|.++.+.
T Consensus 4 ~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 4 GESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAV 83 (311)
T ss_pred cCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceecc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccC-------CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCee
Q psy1757 94 KRVNP-------LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVI 166 (348)
Q Consensus 94 ~~~~~-------~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i 166 (348)
++... ...+|||++|+.++++++|++.|++||.|..+.++.|..+.+++||+||.|.+++++++++...-+.|
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~ 163 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDF 163 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeee
Confidence 77543 24689999999999999999999999999999999999999999999999999999999999988999
Q ss_pred CCeEEEEEEcccCCCCCC
Q psy1757 167 CGKEVDVKRVKFNPETMG 184 (348)
Q Consensus 167 ~G~~i~v~~a~~~~~~~~ 184 (348)
++++++|+.|.++.....
T Consensus 164 ~gk~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 164 NGKKVEVKRAIPKEVMQS 181 (311)
T ss_pred cCceeeEeeccchhhccc
Confidence 999999999999987553
No 13
>KOG0145|consensus
Probab=99.94 E-value=5.3e-26 Score=199.48 Aligned_cols=168 Identities=25% Similarity=0.427 Sum_probs=151.1
Q ss_pred CCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCccc
Q psy1757 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDPKR 91 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v~~ 91 (348)
.+....|.|.-||.++|+|||+++|...|+|++|++++|+.+|.+.||+||.|.++++|++||.. ++..+..+.|+|..
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 44456699999999999999999999999999999999999999999999999999999999995 56788999999999
Q ss_pred ccccccC-CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeC--
Q psy1757 92 VTKRVNP-LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVIC-- 167 (348)
Q Consensus 92 a~~~~~~-~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~-- 167 (348)
+.+.... +...|||.+||..+|..+|+++|++||.|...+|+.|..++.+||.+||.|+..++|++||+.++ +.--
T Consensus 118 ARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~ 197 (360)
T KOG0145|consen 118 ARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGC 197 (360)
T ss_pred ccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCC
Confidence 9876543 45789999999999999999999999999999999999999999999999999999999999985 3332
Q ss_pred CeEEEEEEcccCC
Q psy1757 168 GKEVDVKRVKFNP 180 (348)
Q Consensus 168 G~~i~v~~a~~~~ 180 (348)
-.+|.|+++....
T Consensus 198 tepItVKFannPs 210 (360)
T KOG0145|consen 198 TEPITVKFANNPS 210 (360)
T ss_pred CCCeEEEecCCcc
Confidence 3579999987654
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=2.3e-25 Score=224.11 Aligned_cols=163 Identities=21% Similarity=0.422 Sum_probs=138.9
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcC------------CCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhC
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQY------------GEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG 78 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~------------G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~ 78 (348)
......++|||+|||.++|+++|+++|.++ +.|..+.+. ..+|||||+|.+.++|++||+++
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~------~~kg~afVeF~~~e~A~~Al~l~ 243 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN------KEKNFAFLEFRTVEEATFAMALD 243 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC------CCCCEEEEEeCCHHHHhhhhcCC
Confidence 345567999999999999999999999875 234444443 34689999999999999999988
Q ss_pred CcccCCeecCcccccccc------------------------------cCCCceEEEcCCCCCCCHHHHHHHHhhcCCcc
Q psy1757 79 DHYIGNKKIDPKRVTKRV------------------------------NPLKCKIFVGGLTTEITEQDVRDYFSQYGSIT 128 (348)
Q Consensus 79 ~~~~~gr~i~v~~a~~~~------------------------------~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~ 128 (348)
+..|.|+.|.|....... ....++|||+|||..+++++|+++|+.||.|+
T Consensus 244 g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~ 323 (509)
T TIGR01642 244 SIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLK 323 (509)
T ss_pred CeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee
Confidence 889999998886432111 11247899999999999999999999999999
Q ss_pred ccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEcccC
Q psy1757 129 EFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVKFN 179 (348)
Q Consensus 129 ~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~~~ 179 (348)
.+.|+++..++.++|||||+|.+.++|..||+.++ ..|.|+.|.|.++...
T Consensus 324 ~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 324 AFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 99999998899999999999999999999999885 8899999999998654
No 15
>KOG0131|consensus
Probab=99.93 E-value=9.5e-26 Score=188.56 Aligned_cols=171 Identities=23% Similarity=0.393 Sum_probs=153.9
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCC-cccCCeecCc
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGD-HYIGNKKIDP 89 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~-~~~~gr~i~v 89 (348)
.+.+...||||+||+..++++.|.++|-+.|+|++++|.+|+.+...+|||||+|.++|+|+=|++..+ .++-||.|++
T Consensus 4 ~~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv 83 (203)
T KOG0131|consen 4 IERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRV 83 (203)
T ss_pred cccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEE
Confidence 456678999999999999999999999999999999999999999999999999999999999999654 5899999999
Q ss_pred cccccc--ccCCCceEEEcCCCCCCCHHHHHHHHhhcCCccc-cccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-Ce
Q psy1757 90 KRVTKR--VNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITE-FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QV 165 (348)
Q Consensus 90 ~~a~~~--~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~ 165 (348)
..+... ..+...+|||+||.++++|..|.+.|+.||.|.. -+|+++..++.+++|+||.|++.+.+.+|++.++ ..
T Consensus 84 ~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~ 163 (203)
T KOG0131|consen 84 NKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQY 163 (203)
T ss_pred EecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccch
Confidence 988732 2234578999999999999999999999998765 5788999999999999999999999999999985 78
Q ss_pred eCCeEEEEEEcccCCC
Q psy1757 166 ICGKEVDVKRVKFNPE 181 (348)
Q Consensus 166 i~G~~i~v~~a~~~~~ 181 (348)
++.++++|..+..+..
T Consensus 164 l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 164 LCNRPITVSYAFKKDT 179 (203)
T ss_pred hcCCceEEEEEEecCC
Confidence 8999999999887654
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.93 E-value=4e-25 Score=220.68 Aligned_cols=156 Identities=13% Similarity=0.140 Sum_probs=134.2
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh---CCcccCCeecCccc
Q psy1757 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA---GDHYIGNKKIDPKR 91 (348)
Q Consensus 15 ~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~---~~~~~~gr~i~v~~ 91 (348)
.+++|||+|||+++|+++|+++|++||.|.+|.|+++ |+||||+|++.++|++||+. +...+.|+.|.|++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4789999999999999999999999999999999864 47999999999999999984 45789999999998
Q ss_pred ccccccC-------------CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHH
Q psy1757 92 VTKRVNP-------------LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQV 158 (348)
Q Consensus 92 a~~~~~~-------------~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~A 158 (348)
+..+... ...+|||.||++++|+++|+++|++||.|++|.|+++.. +++|||+|.+.++|.+|
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A 150 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHA 150 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHH
Confidence 7543211 113799999999999999999999999999999987643 46899999999999999
Q ss_pred HHcCC-CeeCC--eEEEEEEcccCC
Q psy1757 159 LKNPK-QVICG--KEVDVKRVKFNP 180 (348)
Q Consensus 159 l~~~~-~~i~G--~~i~v~~a~~~~ 180 (348)
++.|+ ..|.+ +.|+|.|++...
T Consensus 151 ~~~Lng~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 151 KAALNGADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred HHHhcCCcccCCceEEEEEEecCCC
Confidence 99885 77754 588999888643
No 17
>KOG0127|consensus
Probab=99.92 E-value=2.1e-24 Score=206.14 Aligned_cols=165 Identities=22% Similarity=0.411 Sum_probs=149.1
Q ss_pred CCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCcccccc
Q psy1757 16 ERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDPKRVTK 94 (348)
Q Consensus 16 ~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v~~a~~ 94 (348)
..||||++||++++.++|.++|+.+|+|..|.++.++.++.+|||+||+|.-.|+++.|+.. .+..|+|+.|++..+..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 38999999999999999999999999999999999999999999999999999999999986 45689999999988765
Q ss_pred cccC---------------------------CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEE
Q psy1757 95 RVNP---------------------------LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFI 147 (348)
Q Consensus 95 ~~~~---------------------------~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV 147 (348)
+... ...+|+|.|||+.+.+.+|+.+|+.||.|.+|.|++..+ ++-.|||||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV 163 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFV 163 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEE
Confidence 4211 136799999999999999999999999999999997765 445699999
Q ss_pred EECCHHHHHHHHHcCC-CeeCCeEEEEEEcccCCC
Q psy1757 148 SFDDQNVADQVLKNPK-QVICGKEVDVKRVKFNPE 181 (348)
Q Consensus 148 ~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~~~~~ 181 (348)
.|.+..+|..|++.+| ++|.|++|-|.||.++..
T Consensus 164 ~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 164 QFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred EEeeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 9999999999999996 899999999999988754
No 18
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.92 E-value=4.4e-24 Score=213.13 Aligned_cols=159 Identities=14% Similarity=0.257 Sum_probs=135.4
Q ss_pred CCCCEEEEcCCCC-cccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCccc
Q psy1757 14 NDERKLFVGGLHR-NTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKR 91 (348)
Q Consensus 14 ~~~~~lfVgnLp~-~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~ 91 (348)
..+++|||+||++ ++|+++|+++|+.||.|.+|+|++++ +|||||+|.+.++|++||+ +++..|.|+.|.|..
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 4678999999998 69999999999999999999999863 5899999999999999998 567789999998876
Q ss_pred ccccc--------------------------------------cCCCceEEEcCCCCCCCHHHHHHHHhhcCC--ccccc
Q psy1757 92 VTKRV--------------------------------------NPLKCKIFVGGLTTEITEQDVRDYFSQYGS--ITEFQ 131 (348)
Q Consensus 92 a~~~~--------------------------------------~~~~~~l~V~nLp~~~te~~L~~~F~~~G~--i~~v~ 131 (348)
+.... .+.+.+|||+|||.++++++|+++|++||. |+.|+
T Consensus 348 s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik 427 (481)
T TIGR01649 348 SKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFK 427 (481)
T ss_pred cccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEE
Confidence 53220 012468999999999999999999999998 88888
Q ss_pred cCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeE------EEEEEcccC
Q psy1757 132 QPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKE------VDVKRVKFN 179 (348)
Q Consensus 132 i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~------i~v~~a~~~ 179 (348)
+...+. + .+++|||+|++.++|.+||..++ ..|.++. |+|.+++++
T Consensus 428 ~~~~~~-~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 428 FFPKDN-E-RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred EecCCC-C-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 865442 2 57899999999999999999985 7888875 888888754
No 19
>KOG0109|consensus
Probab=99.92 E-value=6.1e-25 Score=195.63 Aligned_cols=153 Identities=25% Similarity=0.436 Sum_probs=139.3
Q ss_pred CEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCccccccc
Q psy1757 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKRVTKR 95 (348)
Q Consensus 17 ~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~a~~~ 95 (348)
.+|||||||.++++.+|+.+|++||+|.+|.|+++ |+||..+++..++.||. +++-+|+|..|+|+.++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999986 99999999999999999 4556999999999998877
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEE
Q psy1757 96 VNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVK 174 (348)
Q Consensus 96 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~ 174 (348)
+..+.+|+|+||.+.++.++|+..|++||.|.+++|++| ++||.|+-.++|..|++.| +.+|.|+++.|.
T Consensus 75 -sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq 145 (346)
T KOG0109|consen 75 -SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQ 145 (346)
T ss_pred -CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeee
Confidence 556789999999999999999999999999999999876 9999999999999999998 599999999999
Q ss_pred EcccCCCCCCCC
Q psy1757 175 RVKFNPETMGSV 186 (348)
Q Consensus 175 ~a~~~~~~~~~~ 186 (348)
.+..+-....++
T Consensus 146 ~stsrlrtapgm 157 (346)
T KOG0109|consen 146 LSTSRLRTAPGM 157 (346)
T ss_pred eeccccccCCCC
Confidence 988775544433
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.91 E-value=1.6e-23 Score=210.83 Aligned_cols=167 Identities=20% Similarity=0.378 Sum_probs=140.9
Q ss_pred CCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCccc
Q psy1757 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDPKR 91 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v~~ 91 (348)
....++|||+|||.++|+++|+++|+.||.|..|.|++++.++.++|||||+|.+.++|++||+. ++..|.++.|.|++
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999974 66789999998877
Q ss_pred ccccc-----------------------------cCCCceEEEcCCCCC--C--------CHHHHHHHHhhcCCcccccc
Q psy1757 92 VTKRV-----------------------------NPLKCKIFVGGLTTE--I--------TEQDVRDYFSQYGSITEFQQ 132 (348)
Q Consensus 92 a~~~~-----------------------------~~~~~~l~V~nLp~~--~--------te~~L~~~F~~~G~i~~v~i 132 (348)
+.... ....++|+|.||... + ..++|+++|++||.|+.|.|
T Consensus 372 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i 451 (509)
T TIGR01642 372 ACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVI 451 (509)
T ss_pred CccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEe
Confidence 63211 012467899998532 1 23689999999999999999
Q ss_pred CCCC---CCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEcccC
Q psy1757 133 PFDK---SKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVKFN 179 (348)
Q Consensus 133 ~~~~---~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~~~ 179 (348)
+++. .++..+|++||+|.+.++|++|++.|+ ..|+|+.|.|.+....
T Consensus 452 ~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 452 PRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGED 502 (509)
T ss_pred eccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHH
Confidence 8753 345567999999999999999999995 8999999999987654
No 21
>KOG0124|consensus
Probab=99.90 E-value=1.1e-23 Score=192.47 Aligned_cols=166 Identities=23% Similarity=0.452 Sum_probs=150.1
Q ss_pred CCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCcccccc
Q psy1757 16 ERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDPKRVTK 94 (348)
Q Consensus 16 ~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v~~a~~ 94 (348)
-|+||||.|++++.|+.|+..|..||+|++|++.+|+.|+++||||||+|+-+|.|+-|++. ++..+.||.|+|.+..+
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 37899999999999999999999999999999999999999999999999999999999995 55789999999986543
Q ss_pred ccc------------CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC
Q psy1757 95 RVN------------PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP 162 (348)
Q Consensus 95 ~~~------------~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~ 162 (348)
-.. ..-.+|||..+.++++|+||+.+|+.||+|+.|.+-++......|||+||+|.+..+...||..+
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 221 12378999999999999999999999999999999999988999999999999999999999999
Q ss_pred C-CeeCCeEEEEEEcccCCC
Q psy1757 163 K-QVICGKEVDVKRVKFNPE 181 (348)
Q Consensus 163 ~-~~i~G~~i~v~~a~~~~~ 181 (348)
| ..+.|.-++|-.+...+.
T Consensus 273 NlFDLGGQyLRVGk~vTPP~ 292 (544)
T KOG0124|consen 273 NLFDLGGQYLRVGKCVTPPD 292 (544)
T ss_pred chhhcccceEecccccCCCc
Confidence 8 789999999987665543
No 22
>KOG0127|consensus
Probab=99.90 E-value=3.7e-23 Score=197.61 Aligned_cols=165 Identities=22% Similarity=0.375 Sum_probs=146.4
Q ss_pred CCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCcccccc
Q psy1757 16 ERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDPKRVTK 94 (348)
Q Consensus 16 ~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v~~a~~ 94 (348)
.-+|.|+|||+.+.+.+|..+|+.||.|.+|.|++.+ .++-+|||||+|.+..+|.+||+. +.+.|.||.|-|.|+..
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 6789999999999999999999999999999999776 555559999999999999999996 56799999999999754
Q ss_pred ccc-----------------------------------------------------------------------------
Q psy1757 95 RVN----------------------------------------------------------------------------- 97 (348)
Q Consensus 95 ~~~----------------------------------------------------------------------------- 97 (348)
+..
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 300
Q ss_pred ----------C----CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-
Q psy1757 98 ----------P----LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP- 162 (348)
Q Consensus 98 ----------~----~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~- 162 (348)
+ ...+|||.|||+++|+++|.++|++||.|..+.|+.++.|++++|.|||.|.+..+|..||+..
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 0 0168999999999999999999999999999999999999999999999999999999999985
Q ss_pred -----C-CeeCCeEEEEEEcccCCC
Q psy1757 163 -----K-QVICGKEVDVKRVKFNPE 181 (348)
Q Consensus 163 -----~-~~i~G~~i~v~~a~~~~~ 181 (348)
. ..|.|+.|.|..+..+.+
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAVTRKE 380 (678)
T ss_pred ccCCCceEEEeccEEeeeeccchHH
Confidence 2 568999999998877644
No 23
>KOG0145|consensus
Probab=99.87 E-value=5.7e-22 Score=174.16 Aligned_cols=168 Identities=21% Similarity=0.332 Sum_probs=145.0
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCC--eecC
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGN--KKID 88 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~g--r~i~ 88 (348)
+.-....|||.+||+.+|..||+.+|++||.|...+|+.|..|+.+||.+||.|..+++|+.||+. ++++-.| .+|.
T Consensus 123 ~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepIt 202 (360)
T KOG0145|consen 123 DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPIT 202 (360)
T ss_pred hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeE
Confidence 334557899999999999999999999999999999999999999999999999999999999986 3343332 3666
Q ss_pred cccccccccC----------------------------------------------------------------CCceEE
Q psy1757 89 PKRVTKRVNP----------------------------------------------------------------LKCKIF 104 (348)
Q Consensus 89 v~~a~~~~~~----------------------------------------------------------------~~~~l~ 104 (348)
|+.+...... ...+||
T Consensus 203 VKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciF 282 (360)
T KOG0145|consen 203 VKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIF 282 (360)
T ss_pred EEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEE
Confidence 6665433100 116799
Q ss_pred EcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEcccC
Q psy1757 105 VGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVKFN 179 (348)
Q Consensus 105 V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~~~ 179 (348)
|-||.++.+|..|-++|..||.|..|+|++|-.+++-|||+||.+.+-++|..||..++ ..+.+|.+.|.+...+
T Consensus 283 vYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 283 VYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred EEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999986 7899999999987654
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.86 E-value=5.8e-21 Score=189.79 Aligned_cols=160 Identities=22% Similarity=0.400 Sum_probs=135.5
Q ss_pred CCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCcccccc
Q psy1757 16 ERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKRVTK 94 (348)
Q Consensus 16 ~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~a~~ 94 (348)
.++|||+|||.++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+ +++..|.|+.|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 6899999999999999999999999999999999999899999999999999999999998 566789999999888421
Q ss_pred cc------------------------------------------------------------------------------
Q psy1757 95 RV------------------------------------------------------------------------------ 96 (348)
Q Consensus 95 ~~------------------------------------------------------------------------------ 96 (348)
..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 00
Q ss_pred -------------cCCCceEEEcCCCCCCC----------HHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHH
Q psy1757 97 -------------NPLKCKIFVGGLTTEIT----------EQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQN 153 (348)
Q Consensus 97 -------------~~~~~~l~V~nLp~~~t----------e~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e 153 (348)
....+.|+|.||-...+ .+||++.|++||.|+.|.|... ...|++||+|.+.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~----~~~G~~fV~F~~~e 421 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK----NSAGKIYLKFSSVD 421 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC----CCceeEEEEECCHH
Confidence 01225577888744433 3689999999999999998643 35689999999999
Q ss_pred HHHHHHHcCC-CeeCCeEEEEEEcccC
Q psy1757 154 VADQVLKNPK-QVICGKEVDVKRVKFN 179 (348)
Q Consensus 154 ~A~~Al~~~~-~~i~G~~i~v~~a~~~ 179 (348)
+|.+|++.|+ ..|+|+.|.+.+....
T Consensus 422 ~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 422 AALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred HHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 9999999995 8899999999887654
No 25
>KOG0123|consensus
Probab=99.86 E-value=2.4e-21 Score=185.63 Aligned_cols=154 Identities=25% Similarity=0.424 Sum_probs=139.8
Q ss_pred CEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCC-cccCCeecCccccccc
Q psy1757 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGD-HYIGNKKIDPKRVTKR 95 (348)
Q Consensus 17 ~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~-~~~~gr~i~v~~a~~~ 95 (348)
..|||| +++||..|.++|+++|+|.+++|.+|. | +.|||||.|.++++|++||+..+ ..++|++|++.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 899999999999999999999999998 6 99999999999999999999866 5899999999998654
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEE
Q psy1757 96 VNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVK 174 (348)
Q Consensus 96 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~ 174 (348)
.. .|||.||+++++..+|.++|+.||.|.+|++..+.+. ++|+ ||+|+++++|++|++.+| ..+.+++|-|.
T Consensus 76 ~~----~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g--~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg 148 (369)
T KOG0123|consen 76 PS----LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG--SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVG 148 (369)
T ss_pred Cc----eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC--ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEe
Confidence 32 3999999999999999999999999999999988754 9999 999999999999999985 77899999998
Q ss_pred EcccCCCCC
Q psy1757 175 RVKFNPETM 183 (348)
Q Consensus 175 ~a~~~~~~~ 183 (348)
....+..+.
T Consensus 149 ~~~~~~er~ 157 (369)
T KOG0123|consen 149 LFERKEERE 157 (369)
T ss_pred eccchhhhc
Confidence 887776643
No 26
>KOG0148|consensus
Probab=99.85 E-value=2.3e-21 Score=171.35 Aligned_cols=137 Identities=23% Similarity=0.448 Sum_probs=118.2
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCccc
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKR 91 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~ 91 (348)
.+++.|||||+||+.++||+-|..+|++.|.|++|+|+.|. |.|.|
T Consensus 2 ~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e----------------------------------~~v~w 47 (321)
T KOG0148|consen 2 GSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDE----------------------------------LKVNW 47 (321)
T ss_pred CCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehhh----------------------------------hcccc
Confidence 45678999999999999999999999999999999998861 11222
Q ss_pred cccc------ccCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-C
Q psy1757 92 VTKR------VNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-Q 164 (348)
Q Consensus 92 a~~~------~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~ 164 (348)
+... ......-+||+.|...++-++||+.|.+||+|.+++|++|..|+++|||+||.|-..++|+.||..|+ .
T Consensus 48 a~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGq 127 (321)
T KOG0148|consen 48 ATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQ 127 (321)
T ss_pred ccCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCe
Confidence 1111 11123569999999999999999999999999999999999999999999999999999999999996 8
Q ss_pred eeCCeEEEEEEcccCCCC
Q psy1757 165 VICGKEVDVKRVKFNPET 182 (348)
Q Consensus 165 ~i~G~~i~v~~a~~~~~~ 182 (348)
.|..|.|+-.|+..|+..
T Consensus 128 WlG~R~IRTNWATRKp~e 145 (321)
T KOG0148|consen 128 WLGRRTIRTNWATRKPSE 145 (321)
T ss_pred eeccceeeccccccCccc
Confidence 899999999999988743
No 27
>KOG0146|consensus
Probab=99.84 E-value=7.4e-21 Score=167.80 Aligned_cols=168 Identities=24% Similarity=0.447 Sum_probs=143.8
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhC-C-cccCC--eecCc
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG-D-HYIGN--KKIDP 89 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~-~-~~~~g--r~i~v 89 (348)
-+.|+||||-|.+.-+|||++.+|..||+|++|.+.+.. ++.+|||+||.|.+..+|..||+.+ + ..+-| ..|-|
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 378999999999999999999999999999999999987 8999999999999999999999862 2 23332 23333
Q ss_pred cccccc--------------------------------------------------------------------------
Q psy1757 90 KRVTKR-------------------------------------------------------------------------- 95 (348)
Q Consensus 90 ~~a~~~-------------------------------------------------------------------------- 95 (348)
+.++..
T Consensus 96 K~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~ 175 (371)
T KOG0146|consen 96 KFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLA 175 (371)
T ss_pred EeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccc
Confidence 333211
Q ss_pred --------------------------------------------------------------------------------
Q psy1757 96 -------------------------------------------------------------------------------- 95 (348)
Q Consensus 96 -------------------------------------------------------------------------------- 95 (348)
T Consensus 176 A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~A 255 (371)
T KOG0146|consen 176 AAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAA 255 (371)
T ss_pred cCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhh
Confidence
Q ss_pred -------------------------ccCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEEC
Q psy1757 96 -------------------------VNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFD 150 (348)
Q Consensus 96 -------------------------~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~ 150 (348)
+.+..|.|||-.||.+..+.+|.+.|-.||.|++.+|+.|+.|+.+|+|+||.|+
T Consensus 256 aypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfD 335 (371)
T KOG0146|consen 256 AYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFD 335 (371)
T ss_pred hcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecC
Confidence 0012299999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCC-CeeCCeEEEEEEcccCCCC
Q psy1757 151 DQNVADQVLKNPK-QVICGKEVDVKRVKFNPET 182 (348)
Q Consensus 151 ~~e~A~~Al~~~~-~~i~G~~i~v~~a~~~~~~ 182 (348)
++.+|+.||..+| ..|.=++++|...++++..
T Consensus 336 Np~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 336 NPASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred CchhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 9999999999986 7788899999888888764
No 28
>KOG0147|consensus
Probab=99.84 E-value=1.6e-21 Score=187.22 Aligned_cols=172 Identities=24% Similarity=0.410 Sum_probs=154.8
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCc
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDP 89 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v 89 (348)
..++.+.++||+-.|...+++.+|.++|+.+|+|.+|+|+.|+.++++||.|+|+|.|.+++-.||.+.++.+.|.+|.|
T Consensus 173 ~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~v 252 (549)
T KOG0147|consen 173 SPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIV 252 (549)
T ss_pred CchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEe
Confidence 35566789999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccccccccC---------------CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHH
Q psy1757 90 KRVTKRVNP---------------LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNV 154 (348)
Q Consensus 90 ~~a~~~~~~---------------~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~ 154 (348)
+......+. .-.+|||+||..++++++|+.+|+.||.|+.|.+.+|.++|+++||+||+|.+.++
T Consensus 253 q~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred cccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 775432110 11349999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCC-CeeCCeEEEEEEcccCCC
Q psy1757 155 ADQVLKNPK-QVICGKEVDVKRVKFNPE 181 (348)
Q Consensus 155 A~~Al~~~~-~~i~G~~i~v~~a~~~~~ 181 (348)
|.+|++.+| .+|-|+.|+|.....+-.
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeeeecc
Confidence 999999986 889999999988776644
No 29
>KOG0110|consensus
Probab=99.83 E-value=1.1e-20 Score=185.91 Aligned_cols=165 Identities=26% Similarity=0.417 Sum_probs=143.3
Q ss_pred CCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCC---CcceEEEEEecCHHHHHHHHHhCC-cccCCeecCccc
Q psy1757 16 ERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTG---QSRGFAFVTYTTQKAVDDLLAAGD-HYIGNKKIDPKR 91 (348)
Q Consensus 16 ~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg---~~kG~aFV~F~~~e~A~~Al~~~~-~~~~gr~i~v~~ 91 (348)
.++|||.||.+++|.++|...|...|.|.+|.|...+... .|.||+||+|.+.++|++|++.++ +.+.|+.|.++.
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 3449999999999999999999999999999887655221 355999999999999999999865 899999998888
Q ss_pred cc--------ccccC--CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHc
Q psy1757 92 VT--------KRVNP--LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161 (348)
Q Consensus 92 a~--------~~~~~--~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~ 161 (348)
+. .+... ...+|+|.|||+..+..+++++|..||.|..|+|+.....+.++|||||+|-++++|.+|++.
T Consensus 595 S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~a 674 (725)
T KOG0110|consen 595 SENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDA 674 (725)
T ss_pred ccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHh
Confidence 76 21111 236899999999999999999999999999999998866677899999999999999999999
Q ss_pred CC-CeeCCeEEEEEEcccCC
Q psy1757 162 PK-QVICGKEVDVKRVKFNP 180 (348)
Q Consensus 162 ~~-~~i~G~~i~v~~a~~~~ 180 (348)
+. ..+.||.+.+.|++...
T Consensus 675 l~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 675 LGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred hcccceechhhheehhccch
Confidence 95 77999999999998754
No 30
>KOG0144|consensus
Probab=99.83 E-value=1.1e-20 Score=176.30 Aligned_cols=168 Identities=27% Similarity=0.432 Sum_probs=146.0
Q ss_pred CCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCc--ccCCe--ecC
Q psy1757 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDH--YIGNK--KID 88 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~--~~~gr--~i~ 88 (348)
..++++||||-|++.+||+||+++|++||.|++|.|++|. .+.+||||||+|.++|.|..||+.++. .+.|. +|.
T Consensus 121 ~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLV 199 (510)
T KOG0144|consen 121 IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLV 199 (510)
T ss_pred cccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceE
Confidence 3458999999999999999999999999999999999997 899999999999999999999997553 45543 666
Q ss_pred ccccccccc-----------------------------------------------------------------------
Q psy1757 89 PKRVTKRVN----------------------------------------------------------------------- 97 (348)
Q Consensus 89 v~~a~~~~~----------------------------------------------------------------------- 97 (348)
|++++.++.
T Consensus 200 VkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~ 279 (510)
T KOG0144|consen 200 VKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAA 279 (510)
T ss_pred EEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHH
Confidence 666653300
Q ss_pred --------------------------------------------------------------------------------
Q psy1757 98 -------------------------------------------------------------------------------- 97 (348)
Q Consensus 98 -------------------------------------------------------------------------------- 97 (348)
T Consensus 280 ~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp 359 (510)
T KOG0144|consen 280 LAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSP 359 (510)
T ss_pred hhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCc
Confidence
Q ss_pred --------------------------------------------------------------CCCceEEEcCCCCCCCHH
Q psy1757 98 --------------------------------------------------------------PLKCKIFVGGLTTEITEQ 115 (348)
Q Consensus 98 --------------------------------------------------------------~~~~~l~V~nLp~~~te~ 115 (348)
+....|||.+||.+.-+.
T Consensus 360 ~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq 439 (510)
T KOG0144|consen 360 VAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQ 439 (510)
T ss_pred ccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhH
Confidence 001569999999999999
Q ss_pred HHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEcccCCC
Q psy1757 116 DVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVKFNPE 181 (348)
Q Consensus 116 ~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~~~~~ 181 (348)
+|-..|..||.|+..+++.|+.++.+|+|+||.|++..+|..||..++ ..|..++++|...+++.+
T Consensus 440 ~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 440 DLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred HHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 999999999999999999999999999999999999999999999996 779999999987766544
No 31
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.81 E-value=4.7e-19 Score=148.66 Aligned_cols=86 Identities=22% Similarity=0.531 Sum_probs=79.6
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~ 175 (348)
....++|||+||+++++|++|+++|++||.|++|+|+.+..+++++|||||+|++.++|++||+.+ +++|+|++|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 345688999999999999999999999999999999999999999999999999999999999987 5899999999999
Q ss_pred cccCCCC
Q psy1757 176 VKFNPET 182 (348)
Q Consensus 176 a~~~~~~ 182 (348)
++.++..
T Consensus 111 a~~~~~~ 117 (144)
T PLN03134 111 ANDRPSA 117 (144)
T ss_pred CCcCCCC
Confidence 9876553
No 32
>KOG0105|consensus
Probab=99.79 E-value=1.7e-18 Score=145.32 Aligned_cols=141 Identities=21% Similarity=0.354 Sum_probs=121.7
Q ss_pred CCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCccc
Q psy1757 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDPKR 91 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v~~ 91 (348)
...+++|||+|||.++.+.||.++|.+||.|.+|.++..+ ..-.||||+|++..+|+.||.. ++-.+.+..|+|+.
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 3568999999999999999999999999999999987643 3347999999999999999986 44689999999988
Q ss_pred cccc---------------------------ccCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceE
Q psy1757 92 VTKR---------------------------VNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGF 144 (348)
Q Consensus 92 a~~~---------------------------~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~ 144 (348)
+..- ......+|.|.+||.+-+|+||+++..+-|.|....+.+|. .
T Consensus 80 prggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg-------~ 152 (241)
T KOG0105|consen 80 PRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG-------V 152 (241)
T ss_pred ccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc-------c
Confidence 6532 12234789999999999999999999999999999887763 7
Q ss_pred EEEEECCHHHHHHHHHcCC
Q psy1757 145 CFISFDDQNVADQVLKNPK 163 (348)
Q Consensus 145 aFV~F~~~e~A~~Al~~~~ 163 (348)
+.|+|...|+.+-|+.+++
T Consensus 153 GvV~~~r~eDMkYAvr~ld 171 (241)
T KOG0105|consen 153 GVVEYLRKEDMKYAVRKLD 171 (241)
T ss_pred eeeeeeehhhHHHHHHhhc
Confidence 8999999999999999984
No 33
>KOG4211|consensus
Probab=99.78 E-value=6.9e-18 Score=160.45 Aligned_cols=165 Identities=21% Similarity=0.313 Sum_probs=135.6
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCccc
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKR 91 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~ 91 (348)
+-.+...|-+.+|||++|++||.++|+.+ .|+++.+.+ .+++..|-|||+|.++|++++||+++...+..|-|.|-.
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFT 82 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec--cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEc
Confidence 44566778889999999999999999988 577766655 489999999999999999999999988888888888766
Q ss_pred cccccc------------CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHH
Q psy1757 92 VTKRVN------------PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVL 159 (348)
Q Consensus 92 a~~~~~------------~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al 159 (348)
+..... .....|-+.+||+.||++||.++|+..-.|....++.....+++.|-|||.|++.+.|++||
T Consensus 83 ~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al 162 (510)
T KOG4211|consen 83 AGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIAL 162 (510)
T ss_pred cCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHH
Confidence 643321 23467999999999999999999998766655332344445778899999999999999999
Q ss_pred HcCCCeeCCeEEEEEEcccC
Q psy1757 160 KNPKQVICGKEVDVKRVKFN 179 (348)
Q Consensus 160 ~~~~~~i~G~~i~v~~a~~~ 179 (348)
......|.-+-|+|-.+...
T Consensus 163 ~rhre~iGhRYIEvF~Ss~~ 182 (510)
T KOG4211|consen 163 GRHRENIGHRYIEVFRSSRA 182 (510)
T ss_pred HHHHHhhccceEEeehhHHH
Confidence 99888899999999766544
No 34
>KOG0123|consensus
Probab=99.77 E-value=2.3e-18 Score=165.08 Aligned_cols=161 Identities=25% Similarity=0.475 Sum_probs=139.4
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCccccc
Q psy1757 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDPKRVT 93 (348)
Q Consensus 15 ~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v~~a~ 93 (348)
+...|||.||++++|.++|.++|+.||.|++|++..+. .| ++|| ||+|+++++|++||++ ++..+.+++|.+....
T Consensus 75 d~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 75 DPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred CCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 33349999999999999999999999999999999986 55 9999 9999999999999996 5578889998886655
Q ss_pred cccc---------CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-
Q psy1757 94 KRVN---------PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK- 163 (348)
Q Consensus 94 ~~~~---------~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~- 163 (348)
.+.. .....++|.+++.+++++.|+++|..+|.|..+.++.+.. +.+++|+||.|.+.++|..|++.++
T Consensus 152 ~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~-g~~~~~gfv~f~~~e~a~~av~~l~~ 230 (369)
T KOG0123|consen 152 RKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSI-GKSKGFGFVNFENPEDAKKAVETLNG 230 (369)
T ss_pred chhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCC-CCCCCccceeecChhHHHHHHHhccC
Confidence 4332 2246789999999999999999999999999999988865 5589999999999999999999996
Q ss_pred CeeCCeEEEEEEcccC
Q psy1757 164 QVICGKEVDVKRVKFN 179 (348)
Q Consensus 164 ~~i~G~~i~v~~a~~~ 179 (348)
..+.+..+.|..+..+
T Consensus 231 ~~~~~~~~~V~~aqkk 246 (369)
T KOG0123|consen 231 KIFGDKELYVGRAQKK 246 (369)
T ss_pred CcCCccceeecccccc
Confidence 6677788888877764
No 35
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.76 E-value=2.6e-17 Score=165.31 Aligned_cols=80 Identities=16% Similarity=0.440 Sum_probs=72.7
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCcccc
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDPKRV 92 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v~~a 92 (348)
...++|||+||+.++++++|+++|+.||.|++|+|.+|+.++++||||||+|++.++|.+||+. ++..++|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 3457999999999999999999999999999999999998999999999999999999999986 456889998887664
Q ss_pred c
Q psy1757 93 T 93 (348)
Q Consensus 93 ~ 93 (348)
.
T Consensus 282 i 282 (612)
T TIGR01645 282 V 282 (612)
T ss_pred C
Confidence 4
No 36
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.72 E-value=3.6e-17 Score=137.29 Aligned_cols=85 Identities=28% Similarity=0.509 Sum_probs=78.1
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCc
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDP 89 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v 89 (348)
.....+++|||+|||+++|+++|+++|++||+|++|+|+.|+.|++++|||||+|++.++|++||+. +++.|.++.|+|
T Consensus 29 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V 108 (144)
T PLN03134 29 SLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108 (144)
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3456788999999999999999999999999999999999999999999999999999999999984 678999999999
Q ss_pred cccccc
Q psy1757 90 KRVTKR 95 (348)
Q Consensus 90 ~~a~~~ 95 (348)
+++..+
T Consensus 109 ~~a~~~ 114 (144)
T PLN03134 109 NPANDR 114 (144)
T ss_pred EeCCcC
Confidence 987543
No 37
>KOG0149|consensus
Probab=99.66 E-value=1.7e-16 Score=138.48 Aligned_cols=80 Identities=29% Similarity=0.509 Sum_probs=75.5
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCcccccc
Q psy1757 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVTK 94 (348)
Q Consensus 15 ~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~a~~ 94 (348)
.-.+||||+|+|++++|+|+++|++||+|++..|+.|+.|++||||+||+|+|.|+|++|++..+..|+||+.+++.+.-
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999988887653
No 38
>KOG4212|consensus
Probab=99.65 E-value=2.4e-15 Score=141.01 Aligned_cols=161 Identities=21% Similarity=0.376 Sum_probs=136.4
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhh-cCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCC-cccCCeecCccc
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFS-QYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGD-HYIGNKKIDPKR 91 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~-~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~-~~~~gr~i~v~~ 91 (348)
...|.+||.|||+++...+|+++|. +.|+|+.|.++.|. ++++||||.|+|+++|.++||++.++ ++++||+|.++.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 3456699999999999999999995 78999999999996 89999999999999999999999755 589999998876
Q ss_pred cccc----------------------------------------------------------------------------
Q psy1757 92 VTKR---------------------------------------------------------------------------- 95 (348)
Q Consensus 92 a~~~---------------------------------------------------------------------------- 95 (348)
....
T Consensus 121 d~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~ 200 (608)
T KOG4212|consen 121 DHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLS 200 (608)
T ss_pred cCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccch
Confidence 4321
Q ss_pred ----------ccCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-C
Q psy1757 96 ----------VNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-Q 164 (348)
Q Consensus 96 ----------~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~ 164 (348)
..+...++||.||...+..+.|++.|.--|.|+.|.+-.|++ +.++|+|.|+|..+-+|.+||..++ .
T Consensus 201 ~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 201 ASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred hhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhccC
Confidence 001125789999999999999999999999999999988887 4789999999999999999999986 4
Q ss_pred eeCCeEEEEEEc
Q psy1757 165 VICGKEVDVKRV 176 (348)
Q Consensus 165 ~i~G~~i~v~~a 176 (348)
-+..++..++..
T Consensus 280 g~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 280 GLFDRRMTVRLD 291 (608)
T ss_pred CCccccceeecc
Confidence 455666666553
No 39
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.62 E-value=4.3e-15 Score=149.17 Aligned_cols=74 Identities=20% Similarity=0.344 Sum_probs=66.7
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcC--CCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCcc
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQY--GEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPK 90 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~--G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~ 90 (348)
...++|||+||+.++|+++|+++|++| |+|++|++++ +||||+|++.++|++||+ +++.+|.++.|+|.
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 346889999999999999999999999 9999998764 499999999999999998 56789999999999
Q ss_pred ccccc
Q psy1757 91 RVTKR 95 (348)
Q Consensus 91 ~a~~~ 95 (348)
++.+.
T Consensus 303 ~Akp~ 307 (578)
T TIGR01648 303 LAKPV 307 (578)
T ss_pred EccCC
Confidence 98654
No 40
>KOG4206|consensus
Probab=99.61 E-value=1.4e-14 Score=126.19 Aligned_cols=157 Identities=20% Similarity=0.314 Sum_probs=127.6
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHH----HhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhC-CcccCCee
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEIND----YFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG-DHYIGNKK 86 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~----~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~-~~~~~gr~ 86 (348)
+.+.+.||||.||...+..++|++ +|++||.|.+|...+ |.+.||-|||.|.+.+.|-.|+..+ +--+-|+.
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~ 81 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKP 81 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCch
Confidence 344556999999999999999988 999999999988765 6689999999999999999999864 45777888
Q ss_pred cCcccccccc---------------------------------------------------cCCCceEEEcCCCCCCCHH
Q psy1757 87 IDPKRVTKRV---------------------------------------------------NPLKCKIFVGGLTTEITEQ 115 (348)
Q Consensus 87 i~v~~a~~~~---------------------------------------------------~~~~~~l~V~nLp~~~te~ 115 (348)
+++.++.... .+.+..|++.|||.+++.+
T Consensus 82 mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e 161 (221)
T KOG4206|consen 82 MRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESE 161 (221)
T ss_pred hheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHH
Confidence 8877764331 2234679999999999999
Q ss_pred HHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeC-CeEEEEEEc
Q psy1757 116 DVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVIC-GKEVDVKRV 176 (348)
Q Consensus 116 ~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~-G~~i~v~~a 176 (348)
.|..+|++|...++|+++... ++.|||+|.+...|..|...+. ..|. ...+.|.++
T Consensus 162 ~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 162 MLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred HHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 999999999999999987653 5699999999998888888763 4443 556666554
No 41
>KOG0149|consensus
Probab=99.61 E-value=6.9e-16 Score=134.65 Aligned_cols=80 Identities=34% Similarity=0.599 Sum_probs=76.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEEccc
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKF 178 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~a~~ 178 (348)
+-.+|||++|+|+++.++|++.|++||+|++..|+.|+.++++|||+||+|.|.++|.+|++.-+..|+||+..|+.+..
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 44789999999999999999999999999999999999999999999999999999999999999999999999988766
No 42
>KOG0106|consensus
Probab=99.60 E-value=1.6e-15 Score=133.21 Aligned_cols=143 Identities=21% Similarity=0.514 Sum_probs=121.4
Q ss_pred CEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCccccccc
Q psy1757 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDPKRVTKR 95 (348)
Q Consensus 17 ~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v~~a~~~ 95 (348)
.+|||++||..+.+++|.++|..||.|.+|.++. ||+||+|++..+|+.|+.. ++..|.+..+.++++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4799999999999999999999999999998865 6999999999999999985 456777777777766521
Q ss_pred ---------------------ccCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHH
Q psy1757 96 ---------------------VNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNV 154 (348)
Q Consensus 96 ---------------------~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~ 154 (348)
...+.+.|.|.+++..+.|++|++.|+.+|.+....+ .++++||+|++.++
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~d 145 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQED 145 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhh
Confidence 0123588999999999999999999999999865554 24589999999999
Q ss_pred HHHHHHcCC-CeeCCeEEEEEE
Q psy1757 155 ADQVLKNPK-QVICGKEVDVKR 175 (348)
Q Consensus 155 A~~Al~~~~-~~i~G~~i~v~~ 175 (348)
|.+|++.++ ..+.++.|++..
T Consensus 146 a~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 146 AKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred hhhcchhccchhhcCceeeecc
Confidence 999999994 889999999933
No 43
>KOG0147|consensus
Probab=99.57 E-value=6e-15 Score=142.28 Aligned_cols=157 Identities=21% Similarity=0.419 Sum_probs=123.2
Q ss_pred EEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCcccccccc
Q psy1757 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDPKRVTKRV 96 (348)
Q Consensus 18 ~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v~~a~~~~ 96 (348)
+|||+||.+++++++|+.+|+.||.|+.|.+++|..||.+|||+||+|.+.++|.+|++. ++.++-|+.|+|.....+.
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 399999999999999999999999999999999988999999999999999999999774 5678889988764432210
Q ss_pred cC------------------------------------------------------------------------------
Q psy1757 97 NP------------------------------------------------------------------------------ 98 (348)
Q Consensus 97 ~~------------------------------------------------------------------------------ 98 (348)
..
T Consensus 360 ~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~ 439 (549)
T KOG0147|consen 360 DTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAF 439 (549)
T ss_pred ccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcccccccc
Confidence 00
Q ss_pred --CCceEEEcCC-C-CCCC--------HHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-Ce
Q psy1757 99 --LKCKIFVGGL-T-TEIT--------EQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QV 165 (348)
Q Consensus 99 --~~~~l~V~nL-p-~~~t--------e~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~ 165 (348)
.+.++.+.|+ + ...| .+|+.+.+.++|+|..|.|.++ +-|+.||.|.+.++|..|+..++ .+
T Consensus 440 ~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhgrW 514 (549)
T KOG0147|consen 440 DIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHGRW 514 (549)
T ss_pred CCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhhhh
Confidence 0011222222 1 1111 2677888899999999888654 23799999999999999999995 88
Q ss_pred eCCeEEEEEEcccC
Q psy1757 166 ICGKEVDVKRVKFN 179 (348)
Q Consensus 166 i~G~~i~v~~a~~~ 179 (348)
|.|+.|+.++....
T Consensus 515 F~gr~Ita~~~~~~ 528 (549)
T KOG0147|consen 515 FAGRMITAKYLPLE 528 (549)
T ss_pred hccceeEEEEeehh
Confidence 99999999886544
No 44
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.57 E-value=1.1e-14 Score=106.16 Aligned_cols=69 Identities=35% Similarity=0.726 Sum_probs=64.3
Q ss_pred EEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecC
Q psy1757 19 LFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKID 88 (348)
Q Consensus 19 lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~ 88 (348)
|||+|||.++|+++|+++|++||.|..+.+..+ .++.++++|||+|++.++|++|++ .++..++++.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 589999999999999999999999 677888888763
No 45
>KOG0122|consensus
Probab=99.56 E-value=1.2e-14 Score=127.43 Aligned_cols=86 Identities=23% Similarity=0.386 Sum_probs=78.9
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecC
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKID 88 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~ 88 (348)
..+.+++++|-|.||+.+++|++|+++|.+||.|..|.|.+|+.||.+||||||.|.+.++|.+||+. ++.-+..-.|+
T Consensus 183 ~R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILr 262 (270)
T KOG0122|consen 183 MRERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILR 262 (270)
T ss_pred cccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEE
Confidence 45677899999999999999999999999999999999999999999999999999999999999995 45677788899
Q ss_pred ccccccc
Q psy1757 89 PKRVTKR 95 (348)
Q Consensus 89 v~~a~~~ 95 (348)
|+|++++
T Consensus 263 vEwskP~ 269 (270)
T KOG0122|consen 263 VEWSKPS 269 (270)
T ss_pred EEecCCC
Confidence 9998764
No 46
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.55 E-value=7.6e-14 Score=127.16 Aligned_cols=144 Identities=23% Similarity=0.452 Sum_probs=115.8
Q ss_pred CCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCC-cccCCeecCccccc-
Q psy1757 16 ERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGD-HYIGNKKIDPKRVT- 93 (348)
Q Consensus 16 ~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~-~~~~gr~i~v~~a~- 93 (348)
.++|||+|||.++|+++|.++|.+||.|..|.|..++.++.++|||||+|.+.++|..|++..+ ..|.++.|.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6999999999999999999999999999999999998899999999999999999999999766 79999999998843
Q ss_pred ---cccc---------------------CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEE
Q psy1757 94 ---KRVN---------------------PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISF 149 (348)
Q Consensus 94 ---~~~~---------------------~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F 149 (348)
.+.. .....+++.+++..++..++...|..++.+..+.+.............++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 1111 1236789999999999999999999999997777766554433333334444
Q ss_pred CCHHHHHHHH
Q psy1757 150 DDQNVADQVL 159 (348)
Q Consensus 150 ~~~e~A~~Al 159 (348)
.....+....
T Consensus 275 ~~~~~~~~~~ 284 (306)
T COG0724 275 EASKDALESN 284 (306)
T ss_pred hHHHhhhhhh
Confidence 4344333333
No 47
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.54 E-value=1.4e-14 Score=138.18 Aligned_cols=83 Identities=18% Similarity=0.321 Sum_probs=77.3
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~ 175 (348)
....++|||+|||+++|+++|+++|++||.|++|+|++|..+++++|||||+|.++++|++||+.++ ..|.+++|+|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 3456899999999999999999999999999999999999999999999999999999999999885 889999999998
Q ss_pred cccC
Q psy1757 176 VKFN 179 (348)
Q Consensus 176 a~~~ 179 (348)
+++.
T Consensus 184 a~p~ 187 (346)
T TIGR01659 184 ARPG 187 (346)
T ss_pred cccc
Confidence 8764
No 48
>KOG4211|consensus
Probab=99.52 E-value=7.9e-13 Score=126.28 Aligned_cols=162 Identities=19% Similarity=0.278 Sum_probs=124.7
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeE-EEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCcc
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVES-ISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPK 90 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~-i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~ 90 (348)
.......|-+++||+.||++||.++|+-.-.|.. |.++.++ -+++.|-|||+|++.++|++||..+...|..|-|.|.
T Consensus 99 s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF 177 (510)
T KOG4211|consen 99 SSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVF 177 (510)
T ss_pred CCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEee
Confidence 3356678999999999999999999998766655 5566665 6778899999999999999999987777777766654
Q ss_pred cccccc-----------------------------------------------------------c--------------
Q psy1757 91 RVTKRV-----------------------------------------------------------N-------------- 97 (348)
Q Consensus 91 ~a~~~~-----------------------------------------------------------~-------------- 97 (348)
.+...+ .
T Consensus 178 ~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~ 257 (510)
T KOG4211|consen 178 RSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDP 257 (510)
T ss_pred hhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccccccc
Confidence 432110 0
Q ss_pred ---------------------CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHH
Q psy1757 98 ---------------------PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAD 156 (348)
Q Consensus 98 ---------------------~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~ 156 (348)
.....++..+||...++.+|.++|+..-.+ .|.|.. ..+++..|-|+|+|.+.++|.
T Consensus 258 ~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~i-g~dGr~TGEAdveF~t~edav 335 (510)
T KOG4211|consen 258 NYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEI-GPDGRATGEADVEFATGEDAV 335 (510)
T ss_pred ccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEe-CCCCccCCcceeecccchhhH
Confidence 001457888999999999999999875443 344422 345788889999999999999
Q ss_pred HHHHcCCCeeCCeEEEEEEc
Q psy1757 157 QVLKNPKQVICGKEVDVKRV 176 (348)
Q Consensus 157 ~Al~~~~~~i~G~~i~v~~a 176 (348)
.|+.+.+..+..+-|++...
T Consensus 336 ~Amskd~anm~hrYVElFln 355 (510)
T KOG4211|consen 336 GAMGKDGANMGHRYVELFLN 355 (510)
T ss_pred hhhccCCcccCcceeeeccc
Confidence 99999887788777777554
No 49
>KOG1548|consensus
Probab=99.52 E-value=4.8e-13 Score=122.59 Aligned_cols=166 Identities=16% Similarity=0.261 Sum_probs=133.2
Q ss_pred CCCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeE--------EEEeeCCCCCCcceEEEEEecCHHHHHHHHHhC-
Q psy1757 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVES--------ISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG- 78 (348)
Q Consensus 8 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~--------i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~- 78 (348)
+...+...+..|||.|||.++|.+++.++|++||.|.. |+|.++. .|..||-|.+.|...|+++-|++.+
T Consensus 126 ~~~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilD 204 (382)
T KOG1548|consen 126 WFNPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILD 204 (382)
T ss_pred ccCcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhC
Confidence 34444566778999999999999999999999998763 8888886 6999999999999999999999965
Q ss_pred CcccCCeecCccccccc---------------------------------------ccCCCceEEEcCCCC----CCC--
Q psy1757 79 DHYIGNKKIDPKRVTKR---------------------------------------VNPLKCKIFVGGLTT----EIT-- 113 (348)
Q Consensus 79 ~~~~~gr~i~v~~a~~~---------------------------------------~~~~~~~l~V~nLp~----~~t-- 113 (348)
...+.|+.|+|+.+.-. .....++|.+.|+=. ..+
T Consensus 205 e~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~ 284 (382)
T KOG1548|consen 205 EDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPD 284 (382)
T ss_pred cccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHH
Confidence 46888999998876421 011247889988731 122
Q ss_pred -----HHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEccc
Q psy1757 114 -----EQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVKF 178 (348)
Q Consensus 114 -----e~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~~ 178 (348)
+++|++-.++||.|.+|.|.-.. +.|.+-|.|.+.++|..||+.|+ ..|.|++|.......
T Consensus 285 l~~dlkedl~eec~K~G~v~~vvv~d~h----PdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 285 LLNDLKEDLTEECEKFGQVRKVVVYDRH----PDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHHHHHHHHHHhCCcceEEEeccC----CCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 36777888999999999886433 46799999999999999999995 889999998876443
No 50
>KOG0110|consensus
Probab=99.51 E-value=1.1e-13 Score=136.96 Aligned_cols=162 Identities=19% Similarity=0.316 Sum_probs=127.1
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCC-cccCCeecCcc
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGD-HYIGNKKIDPK 90 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~-~~~~gr~i~v~ 90 (348)
.....+.|+|+|||..+..++|.++|..||+|..|.+.. .|. -+.|+|.+..+|.+|+.... ..+....+.+.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~---~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle 454 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPP---GGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLE 454 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecCc---ccc---eeeeeecCccchHHHHHHhchhhhccCccccc
Confidence 455678899999999999999999999999999995542 221 48999999999999998643 23333333333
Q ss_pred ccccc-------------------------------------c--------------cCCCceEEEcCCCCCCCHHHHHH
Q psy1757 91 RVTKR-------------------------------------V--------------NPLKCKIFVGGLTTEITEQDVRD 119 (348)
Q Consensus 91 ~a~~~-------------------------------------~--------------~~~~~~l~V~nLp~~~te~~L~~ 119 (348)
|+... . ....++|||.||+++++.++|..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 32100 0 00124599999999999999999
Q ss_pred HHhhcCCccccccCCCCCC---CccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEcccC
Q psy1757 120 YFSQYGSITEFQQPFDKSK---NMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVKFN 179 (348)
Q Consensus 120 ~F~~~G~i~~v~i~~~~~~---g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~~~ 179 (348)
+|...|.|..++|...+.. -.+.||+||+|.+.++|++|+..|+ +.|+|+.|.|+++..+
T Consensus 535 ~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k 598 (725)
T KOG0110|consen 535 LFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENK 598 (725)
T ss_pred HHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCc
Confidence 9999999999988766532 2355999999999999999999996 9999999999998833
No 51
>KOG1457|consensus
Probab=99.51 E-value=1.2e-13 Score=119.62 Aligned_cols=148 Identities=17% Similarity=0.265 Sum_probs=110.2
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEee-CCCCCCcceEEEEEecCHHHHHHHHHhC-CcccC---Ce
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKN-DPYTGQSRGFAFVTYTTQKAVDDLLAAG-DHYIG---NK 85 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~-d~~tg~~kG~aFV~F~~~e~A~~Al~~~-~~~~~---gr 85 (348)
.+....|||||.+||.|+...||..+|..|--.+.+.|+. ++.....+-++||+|.+.++|.+|+++. +..|+ +.
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 3445589999999999999999999999997777666653 3333456689999999999999999864 33443 33
Q ss_pred ecCccccccccc--------------------------------------------------------------------
Q psy1757 86 KIDPKRVTKRVN-------------------------------------------------------------------- 97 (348)
Q Consensus 86 ~i~v~~a~~~~~-------------------------------------------------------------------- 97 (348)
.|.++.++...+
T Consensus 109 tLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~ 188 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDS 188 (284)
T ss_pred eeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhh
Confidence 444433321100
Q ss_pred -------------------CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHH
Q psy1757 98 -------------------PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQV 158 (348)
Q Consensus 98 -------------------~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~A 158 (348)
....+|||.||..+++|++|+.+|+.|-....++|... + ....||++|++.+.|..|
T Consensus 189 ~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~---~-g~~vaf~~~~~~~~at~a 264 (284)
T KOG1457|consen 189 KAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR---G-GMPVAFADFEEIEQATDA 264 (284)
T ss_pred cCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC---C-CcceEeecHHHHHHHHHH
Confidence 00167999999999999999999999987766666322 1 245899999999999999
Q ss_pred HHcC
Q psy1757 159 LKNP 162 (348)
Q Consensus 159 l~~~ 162 (348)
+..+
T Consensus 265 m~~l 268 (284)
T KOG1457|consen 265 MNHL 268 (284)
T ss_pred HHHh
Confidence 9885
No 52
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.51 E-value=6.4e-14 Score=102.64 Aligned_cols=69 Identities=29% Similarity=0.623 Sum_probs=62.4
Q ss_pred EEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCC-cccCCeecC
Q psy1757 19 LFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGD-HYIGNKKID 88 (348)
Q Consensus 19 lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~-~~~~gr~i~ 88 (348)
|||+|||+++++++|+++|+.+|.|..+.+..++. +.++++|||+|.+.++|++|++.++ ..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999976 8999999999999999999999766 788888763
No 53
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.50 E-value=7.9e-14 Score=125.60 Aligned_cols=79 Identities=16% Similarity=0.323 Sum_probs=72.3
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCcccccc
Q psy1757 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVTK 94 (348)
Q Consensus 15 ~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~a~~ 94 (348)
..++|||+|||+++|+++|+++|+.||+|++|+|++++. ++|||||+|+++++|+.||.+++..|.++.|.|.++..
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 368999999999999999999999999999999998763 56899999999999999999999999999999998865
Q ss_pred cc
Q psy1757 95 RV 96 (348)
Q Consensus 95 ~~ 96 (348)
..
T Consensus 80 ~~ 81 (260)
T PLN03120 80 YQ 81 (260)
T ss_pred CC
Confidence 43
No 54
>KOG0122|consensus
Probab=99.50 E-value=5.6e-14 Score=123.20 Aligned_cols=83 Identities=22% Similarity=0.374 Sum_probs=78.3
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~ 175 (348)
....++|-|.||+.+++|++|+++|.+||.|..|.|.+|++||.+||||||.|.+.++|++||+.|+ +-++.--|+|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 3456889999999999999999999999999999999999999999999999999999999999996 778889999999
Q ss_pred cccC
Q psy1757 176 VKFN 179 (348)
Q Consensus 176 a~~~ 179 (348)
++|+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9986
No 55
>KOG0129|consensus
Probab=99.49 E-value=3.5e-13 Score=129.49 Aligned_cols=169 Identities=22% Similarity=0.380 Sum_probs=126.1
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCC-CC--CCcce---EEEEEecCHHHHHHHHHhCCcc---
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDP-YT--GQSRG---FAFVTYTTQKAVDDLLAAGDHY--- 81 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~-~t--g~~kG---~aFV~F~~~e~A~~Al~~~~~~--- 81 (348)
....-+++||||+||++++|++|...|..||.+. |...... .. --.+| |+|+.|+++.++++.|.++...
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~ 332 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGN 332 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccc
Confidence 4455689999999999999999999999999975 3333211 11 12456 9999999999999988763321
Q ss_pred ---------cCCeecCccccc----------ccccCCCceEEEcCCCCCCCHHHHHHHHh-hcCCccccccCCCCCCCcc
Q psy1757 82 ---------IGNKKIDPKRVT----------KRVNPLKCKIFVGGLTTEITEQDVRDYFS-QYGSITEFQQPFDKSKNMK 141 (348)
Q Consensus 82 ---------~~gr~i~v~~a~----------~~~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~~g~~ 141 (348)
+..+.++|.... ....+..+|||||+||.-++.++|..+|+ .||.|..+-|-+|.+-..+
T Consensus 333 ~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYP 412 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYP 412 (520)
T ss_pred eEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCC
Confidence 122222221111 11234569999999999999999999999 6999999999999888999
Q ss_pred ceEEEEEECCHHHHHHHHHcCCCee----CCeEEEEEEcccCC
Q psy1757 142 KGFCFISFDDQNVADQVLKNPKQVI----CGKEVDVKRVKFNP 180 (348)
Q Consensus 142 rG~aFV~F~~~e~A~~Al~~~~~~i----~G~~i~v~~a~~~~ 180 (348)
+|-+-|+|.+..+-.+||+..-.+| -.|+|+|+.-....
T Consensus 413 kGaGRVtFsnqqsYi~AIsarFvql~h~d~~KRVEIkPYv~eD 455 (520)
T KOG0129|consen 413 KGAGRVTFSNQQAYIKAISARFVQLDHTDIDKRVEIKPYVMED 455 (520)
T ss_pred CCcceeeecccHHHHHHHhhheEEEeccccceeeeecceeccc
Confidence 9999999999999999999853332 34677776554333
No 56
>KOG0121|consensus
Probab=99.48 E-value=6.4e-14 Score=111.27 Aligned_cols=81 Identities=23% Similarity=0.413 Sum_probs=73.9
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCcc
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDPK 90 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v~ 90 (348)
....++||||+||+..++||.|.++|+++|+|..|.|=.|+.+....|||||+|-+.++|+.||+- ++..++.+.|.+.
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 346789999999999999999999999999999999989999999999999999999999999995 5678888888887
Q ss_pred cc
Q psy1757 91 RV 92 (348)
Q Consensus 91 ~a 92 (348)
|.
T Consensus 112 ~D 113 (153)
T KOG0121|consen 112 WD 113 (153)
T ss_pred cc
Confidence 65
No 57
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.47 E-value=8.9e-14 Score=101.31 Aligned_cols=69 Identities=30% Similarity=0.687 Sum_probs=64.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEE
Q psy1757 103 IFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVD 172 (348)
Q Consensus 103 l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~ 172 (348)
|||+|||.++++++|+++|++||.|..+.+..+ .++..+++|||+|.+.++|++|++.+ +..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999887 67889999999999999999999977 5889999875
No 58
>KOG0113|consensus
Probab=99.45 E-value=2.3e-13 Score=122.46 Aligned_cols=87 Identities=23% Similarity=0.421 Sum_probs=77.7
Q ss_pred CCCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCee
Q psy1757 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKK 86 (348)
Q Consensus 8 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~ 86 (348)
+.....+.-+||||+-|+.+++|.+|++.|+.||+|+.|+|++|+.|++++|||||+|+++.+..+|.+. .+..|+++.
T Consensus 93 dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrr 172 (335)
T KOG0113|consen 93 DPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRR 172 (335)
T ss_pred CCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcE
Confidence 3444557789999999999999999999999999999999999999999999999999999999999984 677999999
Q ss_pred cCcccccc
Q psy1757 87 IDPKRVTK 94 (348)
Q Consensus 87 i~v~~a~~ 94 (348)
|.|..-..
T Consensus 173 i~VDvERg 180 (335)
T KOG0113|consen 173 ILVDVERG 180 (335)
T ss_pred EEEEeccc
Confidence 88776543
No 59
>KOG0125|consensus
Probab=99.44 E-value=1.7e-13 Score=124.65 Aligned_cols=96 Identities=18% Similarity=0.399 Sum_probs=80.9
Q ss_pred cCCeecCcccccccc-cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHH
Q psy1757 82 IGNKKIDPKRVTKRV-NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK 160 (348)
Q Consensus 82 ~~gr~i~v~~a~~~~-~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~ 160 (348)
..+-.+..+.+...+ ....++|+|.|||+...|.||+..|++||+|.+|+|+.+. ..+|||+||+|++.++|++|-+
T Consensus 77 t~g~~~~~~~st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa 154 (376)
T KOG0125|consen 77 TDGQPIQTQPSTNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARA 154 (376)
T ss_pred CCCCccccCCCCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHH
Confidence 444455555544332 3456899999999999999999999999999999999874 4489999999999999999999
Q ss_pred cCC-CeeCCeEEEEEEcccC
Q psy1757 161 NPK-QVICGKEVDVKRVKFN 179 (348)
Q Consensus 161 ~~~-~~i~G~~i~v~~a~~~ 179 (348)
+++ ..|.||+|+|..+..+
T Consensus 155 ~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 155 ELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred HhhcceeeceEEEEeccchh
Confidence 995 8999999999988765
No 60
>KOG0121|consensus
Probab=99.44 E-value=2e-13 Score=108.43 Aligned_cols=81 Identities=22% Similarity=0.439 Sum_probs=75.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEcc
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVK 177 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~ 177 (348)
.+++|||+||+..++||+|.++|+++|.|+.|.+-.|+.+..+.|||||+|-+.++|+.|+..++ ..++.+.|++.|.-
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 46899999999999999999999999999999999999999999999999999999999999984 88999999999865
Q ss_pred cC
Q psy1757 178 FN 179 (348)
Q Consensus 178 ~~ 179 (348)
--
T Consensus 115 GF 116 (153)
T KOG0121|consen 115 GF 116 (153)
T ss_pred cc
Confidence 43
No 61
>KOG0125|consensus
Probab=99.42 E-value=3.6e-13 Score=122.60 Aligned_cols=90 Identities=22% Similarity=0.386 Sum_probs=78.8
Q ss_pred CCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeec
Q psy1757 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKI 87 (348)
Q Consensus 9 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i 87 (348)
..+..+..++|+|.|||+...|-||+.+|++||.|.+|.|+.+ ..-||||+||+|++.++|++|-+ +++..+.||+|
T Consensus 89 ~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkI 166 (376)
T KOG0125|consen 89 NSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKI 166 (376)
T ss_pred cCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEE
Confidence 3455566799999999999999999999999999999999986 45799999999999999999987 46789999999
Q ss_pred CcccccccccCCC
Q psy1757 88 DPKRVTKRVNPLK 100 (348)
Q Consensus 88 ~v~~a~~~~~~~~ 100 (348)
+|..++.+....+
T Consensus 167 EVn~ATarV~n~K 179 (376)
T KOG0125|consen 167 EVNNATARVHNKK 179 (376)
T ss_pred EEeccchhhccCC
Confidence 9999987754443
No 62
>KOG0124|consensus
Probab=99.42 E-value=1.5e-12 Score=119.90 Aligned_cols=79 Identities=16% Similarity=0.448 Sum_probs=70.3
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCc-ccCCeecCcccc
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDH-YIGNKKIDPKRV 92 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~-~~~gr~i~v~~a 92 (348)
..-++|||..+.++.+|+||++.|+.||+|..|++-+++..+.+|||+||+|.+..+...||..++. .+.|.-|+|..+
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 3457899999999999999999999999999999999998899999999999999999999987664 777777776554
No 63
>KOG0105|consensus
Probab=99.42 E-value=6.5e-13 Score=111.93 Aligned_cols=78 Identities=24% Similarity=0.387 Sum_probs=67.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEc
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRV 176 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a 176 (348)
..+++|||+|||.++.+.+|+++|.+||.|.+|++... -....||||+|++..+|+.||..-+ ..++|..|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 35689999999999999999999999999999987432 2245799999999999999999875 8899999999987
Q ss_pred cc
Q psy1757 177 KF 178 (348)
Q Consensus 177 ~~ 178 (348)
..
T Consensus 81 rg 82 (241)
T KOG0105|consen 81 RG 82 (241)
T ss_pred cC
Confidence 64
No 64
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.41 E-value=8.1e-13 Score=117.30 Aligned_cols=77 Identities=21% Similarity=0.296 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCcccccc
Q psy1757 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVTK 94 (348)
Q Consensus 15 ~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~a~~ 94 (348)
+..+|||+||++++|+++|+++|+.||+|.+|+|++|. +.++||||+|+++++++.||.+++..|.++.|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 45799999999999999999999999999999999874 455899999999999999999999999999998887654
No 65
>KOG4212|consensus
Probab=99.41 E-value=4.2e-12 Score=119.46 Aligned_cols=70 Identities=21% Similarity=0.305 Sum_probs=64.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEE
Q psy1757 101 CKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKR 175 (348)
Q Consensus 101 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~ 175 (348)
|+|||.|||.++||+.|++.|.+||.|..++|.. .+.++| .|.|.++++|++|+..++ ..++|+.|+|.+
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 8899999999999999999999999999999943 366676 899999999999999995 889999999976
No 66
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.41 E-value=4.1e-13 Score=98.29 Aligned_cols=69 Identities=25% Similarity=0.586 Sum_probs=63.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEE
Q psy1757 103 IFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVD 172 (348)
Q Consensus 103 l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~ 172 (348)
|+|+|||+++++++|+++|+.+|.|..+++..++. +..+++|||+|.+.++|++|++.++ ..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999877 8899999999999999999999986 899999875
No 67
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.40 E-value=7.3e-13 Score=119.40 Aligned_cols=77 Identities=18% Similarity=0.328 Sum_probs=70.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEEcccC
Q psy1757 100 KCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFN 179 (348)
Q Consensus 100 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~a~~~ 179 (348)
.++|||+||++.+++++|+++|+.||.|++|+|+.++. ++|||||+|.++++|+.||...+..|.|+.|+|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 47899999999999999999999999999999998864 478999999999999999976679999999999997754
No 68
>KOG4207|consensus
Probab=99.40 E-value=9.1e-13 Score=112.91 Aligned_cols=82 Identities=26% Similarity=0.507 Sum_probs=76.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEccc
Q psy1757 100 KCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVKF 178 (348)
Q Consensus 100 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~~ 178 (348)
...|-|.||...++.++|+.+|++||.|.+|.|+.|+.|..++|||||.|.+..+|+.|++.|+ .+|+|++|.|..++-
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 3679999999999999999999999999999999999999999999999999999999999995 899999999988875
Q ss_pred CCC
Q psy1757 179 NPE 181 (348)
Q Consensus 179 ~~~ 181 (348)
...
T Consensus 93 gr~ 95 (256)
T KOG4207|consen 93 GRP 95 (256)
T ss_pred CCC
Confidence 543
No 69
>PLN03213 repressor of silencing 3; Provisional
Probab=99.38 E-value=9.4e-13 Score=125.44 Aligned_cols=80 Identities=19% Similarity=0.455 Sum_probs=70.3
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCH--HHHHHHHHh-CCcccCCeecC
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ--KAVDDLLAA-GDHYIGNKKID 88 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~--e~A~~Al~~-~~~~~~gr~i~ 88 (348)
+.....+||||||++++++++|+..|..||.|.+|.|++ .|| ||||||+|.+. +++.+||+. ++.++.|+.|+
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 344568999999999999999999999999999999994 466 89999999987 689999985 66799999999
Q ss_pred ccccccc
Q psy1757 89 PKRVTKR 95 (348)
Q Consensus 89 v~~a~~~ 95 (348)
|..+++.
T Consensus 82 VNKAKP~ 88 (759)
T PLN03213 82 LEKAKEH 88 (759)
T ss_pred EeeccHH
Confidence 9888653
No 70
>KOG0113|consensus
Probab=99.38 E-value=1.7e-12 Score=116.83 Aligned_cols=82 Identities=23% Similarity=0.371 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEEc
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKRV 176 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~a 176 (348)
+.-+||||+.|+.+++|.+|+..|+.||.|+.|+|+.|..|++++|||||+|+++.+..+|.+.. +..|+|+.|.|..-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 34599999999999999999999999999999999999999999999999999999999999987 58999999999775
Q ss_pred ccC
Q psy1757 177 KFN 179 (348)
Q Consensus 177 ~~~ 179 (348)
.-.
T Consensus 179 RgR 181 (335)
T KOG0113|consen 179 RGR 181 (335)
T ss_pred ccc
Confidence 543
No 71
>KOG0107|consensus
Probab=99.38 E-value=1.9e-12 Score=108.37 Aligned_cols=79 Identities=25% Similarity=0.518 Sum_probs=71.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEc
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRV 176 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a 176 (348)
...++|||+||+..+++.||+.+|..||.|..|.|-.+ +.|||||||++..+|+.|+..|+ ..|+|..|+|+..
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 34789999999999999999999999999999998764 46799999999999999999996 8999999999988
Q ss_pred ccCCC
Q psy1757 177 KFNPE 181 (348)
Q Consensus 177 ~~~~~ 181 (348)
+-...
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 76654
No 72
>KOG0107|consensus
Probab=99.38 E-value=7.3e-13 Score=110.83 Aligned_cols=77 Identities=29% Similarity=0.541 Sum_probs=68.4
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCcccc
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDPKRV 92 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v~~a 92 (348)
.-.++||||||+.++++.||+..|..||+|.+|+|-+++ .|||||+|++..+|+.|+.. ++..|.|..|.|+.+
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 457899999999999999999999999999999998865 48999999999999999985 567888988988887
Q ss_pred ccc
Q psy1757 93 TKR 95 (348)
Q Consensus 93 ~~~ 95 (348)
.-.
T Consensus 83 ~G~ 85 (195)
T KOG0107|consen 83 TGR 85 (195)
T ss_pred cCC
Confidence 543
No 73
>KOG0111|consensus
Probab=99.37 E-value=6e-13 Score=114.95 Aligned_cols=86 Identities=27% Similarity=0.501 Sum_probs=80.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEc
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRV 176 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a 176 (348)
...++|||++|..+++|..|...|-.||.|++|.++.|.++++.|||+||+|...|+|.+||..++ .+|.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 356899999999999999999999999999999999999999999999999999999999999997 8999999999999
Q ss_pred ccCCCCC
Q psy1757 177 KFNPETM 183 (348)
Q Consensus 177 ~~~~~~~ 183 (348)
+|..-..
T Consensus 88 kP~kike 94 (298)
T KOG0111|consen 88 KPEKIKE 94 (298)
T ss_pred CCccccC
Confidence 9875543
No 74
>KOG0126|consensus
Probab=99.35 E-value=9.3e-14 Score=116.72 Aligned_cols=83 Identities=31% Similarity=0.474 Sum_probs=75.5
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCcccc
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKRV 92 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~a 92 (348)
.++.-|||||||.+.||.||...|++||+|++|.+++|+.||+|+||||+.|++..+..-|+. .++..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 567889999999999999999999999999999999999999999999999999999888887 4667999999999876
Q ss_pred cccc
Q psy1757 93 TKRV 96 (348)
Q Consensus 93 ~~~~ 96 (348)
....
T Consensus 113 ~~Yk 116 (219)
T KOG0126|consen 113 SNYK 116 (219)
T ss_pred cccc
Confidence 5443
No 75
>smart00362 RRM_2 RNA recognition motif.
Probab=99.35 E-value=5e-12 Score=91.34 Aligned_cols=70 Identities=31% Similarity=0.691 Sum_probs=63.0
Q ss_pred EEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCC-cccCCeecCc
Q psy1757 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGD-HYIGNKKIDP 89 (348)
Q Consensus 18 ~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~-~~~~gr~i~v 89 (348)
+|||+|||.++++++|+++|++||+|..+.+..++ +.++++|||+|.+.++|++|++..+ ..+.++.|.+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999999876 7788999999999999999998644 6788877765
No 76
>KOG0120|consensus
Probab=99.34 E-value=4.4e-12 Score=123.91 Aligned_cols=169 Identities=20% Similarity=0.372 Sum_probs=129.1
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCc
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDP 89 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v 89 (348)
......++|||++||...++.+++|+.+.||++...+++.|..++.++||||.+|.+.-....|+.. ++..+.++.|.+
T Consensus 284 ~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvv 363 (500)
T KOG0120|consen 284 DVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVV 363 (500)
T ss_pred CcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEe
Confidence 4455678999999999999999999999999999999999999999999999999999999999984 556777787776
Q ss_pred ccccccccC-------------------------CCceEEEcCCC--CC-CCH-------HHHHHHHhhcCCccccccCC
Q psy1757 90 KRVTKRVNP-------------------------LKCKIFVGGLT--TE-ITE-------QDVRDYFSQYGSITEFQQPF 134 (348)
Q Consensus 90 ~~a~~~~~~-------------------------~~~~l~V~nLp--~~-~te-------~~L~~~F~~~G~i~~v~i~~ 134 (348)
..+...... ....|.+.|+= .+ .++ |+++..+.+||.|..|+|++
T Consensus 364 q~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr 443 (500)
T KOG0120|consen 364 QRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPR 443 (500)
T ss_pred ehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCC
Confidence 665322110 11222222221 11 111 55666677899999999988
Q ss_pred CCC---CCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEEcccC
Q psy1757 135 DKS---KNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKRVKFN 179 (348)
Q Consensus 135 ~~~---~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~a~~~ 179 (348)
+.. .....|..||+|.+.+++++|.+.| +.++.++.|...+-...
T Consensus 444 ~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 444 PYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred CCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 722 2334567899999999999999999 58999999988876543
No 77
>KOG4207|consensus
Probab=99.34 E-value=1.9e-12 Score=111.02 Aligned_cols=85 Identities=28% Similarity=0.476 Sum_probs=77.9
Q ss_pred CCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhC-CcccCCeec
Q psy1757 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG-DHYIGNKKI 87 (348)
Q Consensus 9 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~-~~~~~gr~i 87 (348)
..++.+.-.+|-|-||...++.++|+.+|++||.|-+|.|.+|+.|+.++|||||.|.+..+|++|++++ +..++|+.|
T Consensus 6 ~PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRel 85 (256)
T KOG4207|consen 6 PPPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGREL 85 (256)
T ss_pred CCCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecccee
Confidence 3677788899999999999999999999999999999999999999999999999999999999999964 568889988
Q ss_pred Cccccc
Q psy1757 88 DPKRVT 93 (348)
Q Consensus 88 ~v~~a~ 93 (348)
.|+.+.
T Consensus 86 rVq~ar 91 (256)
T KOG4207|consen 86 RVQMAR 91 (256)
T ss_pred eehhhh
Confidence 887663
No 78
>KOG1190|consensus
Probab=99.34 E-value=1.4e-11 Score=115.20 Aligned_cols=154 Identities=16% Similarity=0.244 Sum_probs=124.6
Q ss_pred CCEEEEcCCCCc-ccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCccccc
Q psy1757 16 ERKLFVGGLHRN-TGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDPKRVT 93 (348)
Q Consensus 16 ~~~lfVgnLp~~-~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v~~a~ 93 (348)
+..|.|.||-.+ +|.+.|..+|.-||+|.+|+|+.++. --|.|++.|...|+-|++. .++++.|++|++..++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 688999999765 79999999999999999999998764 3699999999999999985 5679999999887765
Q ss_pred ccc------------------------------------cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCC
Q psy1757 94 KRV------------------------------------NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKS 137 (348)
Q Consensus 94 ~~~------------------------------------~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~ 137 (348)
... -+.+.+|++.|+|.+++||+|++.|.+-|...+...+..+
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~k- 450 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQK- 450 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCC-
Confidence 320 0233689999999999999999999988765443333221
Q ss_pred CCccceEEEEEECCHHHHHHHHHcC-CCeeCCe-EEEEEEccc
Q psy1757 138 KNMKKGFCFISFDDQNVADQVLKNP-KQVICGK-EVDVKRVKF 178 (348)
Q Consensus 138 ~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~-~i~v~~a~~ 178 (348)
.+-++.+.+++.|+|..|+..+ ++.+... .++|++++.
T Consensus 451 ---d~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 451 ---DRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred ---CcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 2449999999999999999888 5777654 789988764
No 79
>KOG0117|consensus
Probab=99.31 E-value=7.8e-12 Score=118.10 Aligned_cols=80 Identities=25% Similarity=0.472 Sum_probs=73.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-Cee-CCeEEEEEE
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVI-CGKEVDVKR 175 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i-~G~~i~v~~ 175 (348)
+..|.|||+.||.++.|++|..+|++.|+|-+++++.|+.+|.+||||||+|.+.++|++||+.+| ++| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 456999999999999999999999999999999999999999999999999999999999999985 666 578887765
Q ss_pred cc
Q psy1757 176 VK 177 (348)
Q Consensus 176 a~ 177 (348)
+.
T Consensus 161 Sv 162 (506)
T KOG0117|consen 161 SV 162 (506)
T ss_pred ee
Confidence 44
No 80
>smart00360 RRM RNA recognition motif.
Probab=99.30 E-value=9.8e-12 Score=89.42 Aligned_cols=69 Identities=30% Similarity=0.618 Sum_probs=62.4
Q ss_pred EcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCC-cccCCeecCc
Q psy1757 21 VGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGD-HYIGNKKIDP 89 (348)
Q Consensus 21 VgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~-~~~~gr~i~v 89 (348)
|+|||.++++++|+++|++||.|..|.+..++.++.++|+|||+|.+.++|.+|++..+ ..+.++.|.+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 68999999999999999999999999999988789999999999999999999998654 6777777654
No 81
>KOG0130|consensus
Probab=99.30 E-value=8.3e-12 Score=100.18 Aligned_cols=84 Identities=24% Similarity=0.451 Sum_probs=79.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEccc
Q psy1757 100 KCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVKF 178 (348)
Q Consensus 100 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~~ 178 (348)
...|||.++.+..+|++|.+.|..||+|++|.+..|+-+|..||||+|+|++.+.|++|++.+| ..|.+..|.|.|+-.
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 4679999999999999999999999999999999999999999999999999999999999997 899999999999988
Q ss_pred CCCCC
Q psy1757 179 NPETM 183 (348)
Q Consensus 179 ~~~~~ 183 (348)
+....
T Consensus 152 ~gp~~ 156 (170)
T KOG0130|consen 152 KGPER 156 (170)
T ss_pred cCCcc
Confidence 76643
No 82
>KOG0111|consensus
Probab=99.30 E-value=2.5e-12 Score=111.13 Aligned_cols=84 Identities=24% Similarity=0.435 Sum_probs=78.0
Q ss_pred CCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCccc
Q psy1757 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDPKR 91 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v~~ 91 (348)
....|+||||+|..++||.-|...|-+||.|.+|+|..|-.+.++|||+||+|+..|+|.+||.. +..++-||.|+|..
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 45789999999999999999999999999999999999999999999999999999999999986 45799999999999
Q ss_pred ccccc
Q psy1757 92 VTKRV 96 (348)
Q Consensus 92 a~~~~ 96 (348)
+.+.+
T Consensus 87 AkP~k 91 (298)
T KOG0111|consen 87 AKPEK 91 (298)
T ss_pred cCCcc
Confidence 87654
No 83
>PLN03213 repressor of silencing 3; Provisional
Probab=99.27 E-value=7.7e-12 Score=119.27 Aligned_cols=77 Identities=21% Similarity=0.411 Sum_probs=69.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCH--HHHHHHHHcCC-CeeCCeEEEEEE
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQ--NVADQVLKNPK-QVICGKEVDVKR 175 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~--e~A~~Al~~~~-~~i~G~~i~v~~ 175 (348)
...+|||+||++.+++++|+.+|+.||.|.+|.|+ ++++ ||||||+|.+. +++.+||+.++ .++.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 34689999999999999999999999999999999 4466 99999999987 78999999985 899999999999
Q ss_pred cccC
Q psy1757 176 VKFN 179 (348)
Q Consensus 176 a~~~ 179 (348)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 8864
No 84
>smart00362 RRM_2 RNA recognition motif.
Probab=99.26 E-value=2.1e-11 Score=88.08 Aligned_cols=71 Identities=30% Similarity=0.682 Sum_probs=65.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEE
Q psy1757 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVK 174 (348)
Q Consensus 102 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~ 174 (348)
+|+|+|||..+++++|+++|++||.|..+++..+. +.++++|||+|.+.++|++|++.++ ..+.|+++.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999988776 6678999999999999999999886 88999998873
No 85
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.26 E-value=1.8e-11 Score=108.82 Aligned_cols=76 Identities=21% Similarity=0.260 Sum_probs=69.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEEccc
Q psy1757 100 KCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKF 178 (348)
Q Consensus 100 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~a~~ 178 (348)
..+|||+||++.+|+++|+++|+.||+|++|+|+++. +.+++|||+|.++++++.|+...+..|.++.|.|.....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 4689999999999999999999999999999999884 345799999999999999998878999999999987654
No 86
>KOG1365|consensus
Probab=99.25 E-value=1.4e-11 Score=114.23 Aligned_cols=163 Identities=18% Similarity=0.295 Sum_probs=126.9
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhcC----CCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCcc
Q psy1757 15 DERKLFVGGLHRNTGEKEINDYFSQY----GEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPK 90 (348)
Q Consensus 15 ~~~~lfVgnLp~~~te~~L~~~F~~~----G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~ 90 (348)
+.-.|-+++||+++++.++.++|.+- |.++.|.+++.+ +|+..|-|||.|..+++|+.||.++...+..|-|.+.
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElF 238 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELF 238 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34456778999999999999999632 345566666654 8899999999999999999999998888888877665
Q ss_pred cccccc--------------------------------cCCCceEEEcCCCCCCCHHHHHHHHhhcCC-ccc--cccCCC
Q psy1757 91 RVTKRV--------------------------------NPLKCKIFVGGLTTEITEQDVRDYFSQYGS-ITE--FQQPFD 135 (348)
Q Consensus 91 ~a~~~~--------------------------------~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~--v~i~~~ 135 (348)
+++..+ ......|.+.+||.+.+.|+|.++|..|-. |.. |.++.+
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N 318 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN 318 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc
Confidence 544220 112467899999999999999999999864 333 555555
Q ss_pred CCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEcccC
Q psy1757 136 KSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVKFN 179 (348)
Q Consensus 136 ~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~~~ 179 (348)
. .|+..|-|||+|.+.|+|.+|..+.. +....+-|+|-.+...
T Consensus 319 ~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~e 362 (508)
T KOG1365|consen 319 G-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVE 362 (508)
T ss_pred C-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHH
Confidence 3 58899999999999999999888874 5556888888766544
No 87
>KOG0116|consensus
Probab=99.24 E-value=6.5e-11 Score=114.38 Aligned_cols=81 Identities=20% Similarity=0.361 Sum_probs=70.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEEcccCC
Q psy1757 101 CKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFNP 180 (348)
Q Consensus 101 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~a~~~~ 180 (348)
.+|||.|||.++++++|+++|..||.|+...|......+...+|+||+|.+.++++.||+.....|+++++.|+..++..
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~~ 368 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPGF 368 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccccc
Confidence 55999999999999999999999999999888765434444589999999999999999998889999999998877654
Q ss_pred C
Q psy1757 181 E 181 (348)
Q Consensus 181 ~ 181 (348)
.
T Consensus 369 ~ 369 (419)
T KOG0116|consen 369 R 369 (419)
T ss_pred c
Confidence 4
No 88
>smart00360 RRM RNA recognition motif.
Probab=99.23 E-value=2.5e-11 Score=87.31 Aligned_cols=70 Identities=31% Similarity=0.638 Sum_probs=64.7
Q ss_pred EcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEE
Q psy1757 105 VGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVK 174 (348)
Q Consensus 105 V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~ 174 (348)
|+|||..+++++|+++|++||.|..+.+..++.++.++++|||+|.+.++|.+|++.++ ..+.++.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999888788899999999999999999999886 88999998873
No 89
>KOG0108|consensus
Probab=99.22 E-value=2.9e-11 Score=117.51 Aligned_cols=79 Identities=23% Similarity=0.417 Sum_probs=74.9
Q ss_pred CEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhC-CcccCCeecCccccccc
Q psy1757 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG-DHYIGNKKIDPKRVTKR 95 (348)
Q Consensus 17 ~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~-~~~~~gr~i~v~~a~~~ 95 (348)
+.|||||||++++|++|.++|+..|.|.+++++.|+.||++|||+|++|.+.+++++|++.+ +.++.|++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999965 57999999999987654
No 90
>KOG1190|consensus
Probab=99.22 E-value=2.6e-11 Score=113.41 Aligned_cols=157 Identities=10% Similarity=0.104 Sum_probs=115.6
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhC---CcccCCeec
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG---DHYIGNKKI 87 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~---~~~~~gr~i 87 (348)
.....++.|.++|||++++|+||.+++.+||.|..+.+++.+ .-|||+|+|+++|...+... .-.+.++.|
T Consensus 23 ~~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGk------nQAflem~d~~sAvtmv~~y~~~~p~lr~~~~ 96 (492)
T KOG1190|consen 23 SMAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGK------NQAFLEMADEESAVTMVNYYTSVTPVLRGQPI 96 (492)
T ss_pred cccCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccc------hhhhhhhcchhhhhheeecccccCccccCcce
Confidence 344578999999999999999999999999999999988765 27999999999988744321 123445555
Q ss_pred Ccccccccc------------------------------c-----------CCCceEEEcCCCCCCCHHHHHHHHhhcCC
Q psy1757 88 DPKRVTKRV------------------------------N-----------PLKCKIFVGGLTTEITEQDVRDYFSQYGS 126 (348)
Q Consensus 88 ~v~~a~~~~------------------------------~-----------~~~~~l~V~nLp~~~te~~L~~~F~~~G~ 126 (348)
.++.+.-.. . ..--+++|.++-..++-+-|..+|++||.
T Consensus 97 yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~ 176 (492)
T KOG1190|consen 97 YIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGF 176 (492)
T ss_pred eehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcce
Confidence 444432110 0 01145788999999999999999999999
Q ss_pred ccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeC--CeEEEEEEcc
Q psy1757 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVIC--GKEVDVKRVK 177 (348)
Q Consensus 127 i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~--G~~i~v~~a~ 177 (348)
|.+|..+....+ --|.|.|.+.+.|..|...++ ..|. ...+++.+++
T Consensus 177 VlKIiTF~Knn~----FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 177 VLKIITFTKNNG----FQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred eEEEEEEecccc----hhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 998876554321 248999999999999998874 4443 3455665544
No 91
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.21 E-value=8.3e-11 Score=85.34 Aligned_cols=72 Identities=33% Similarity=0.641 Sum_probs=63.3
Q ss_pred EEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCC-cccCCeecCcc
Q psy1757 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGD-HYIGNKKIDPK 90 (348)
Q Consensus 18 ~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~-~~~~gr~i~v~ 90 (348)
+|+|+|||.++++++|+++|+.+|.|..+.+..++.+ ..+++|||+|.+.++|..|++... ..++++.+.+.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 5899999999999999999999999999999988744 778999999999999999998654 45778777654
No 92
>KOG1456|consensus
Probab=99.21 E-value=1.9e-09 Score=100.08 Aligned_cols=165 Identities=13% Similarity=0.129 Sum_probs=127.1
Q ss_pred CCCCCCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh---CCcc
Q psy1757 5 ANGTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA---GDHY 81 (348)
Q Consensus 5 ~~~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~---~~~~ 81 (348)
....+......+-.|.|++|-..++|.+|.+.++.||+|.-+.++..+ --+.|+|+|.+.|+.++.. +...
T Consensus 20 e~~~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~ 93 (494)
T KOG1456|consen 20 EDNADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIY 93 (494)
T ss_pred ccCCCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCccc
Confidence 334455667788899999999999999999999999999988877654 3799999999999999874 2346
Q ss_pred cCCeecCcccccccc--------cCCCceEEEc--CCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECC
Q psy1757 82 IGNKKIDPKRVTKRV--------NPLKCKIFVG--GLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDD 151 (348)
Q Consensus 82 ~~gr~i~v~~a~~~~--------~~~~~~l~V~--nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~ 151 (348)
+.|..-....++++. ...++.|.+. |--..+|-+-|..+....|+|.+|.|++. ++ -.|.|||++
T Consensus 94 i~gq~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFds 168 (494)
T KOG1456|consen 94 IAGQQALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDS 168 (494)
T ss_pred ccCchhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeech
Confidence 666666555554332 1223444444 44456899999999999999999999875 22 369999999
Q ss_pred HHHHHHHHHcCC---CeeCCeEEEEEEcccCC
Q psy1757 152 QNVADQVLKNPK---QVICGKEVDVKRVKFNP 180 (348)
Q Consensus 152 ~e~A~~Al~~~~---~~i~G~~i~v~~a~~~~ 180 (348)
.+.|++|...|| ..-....|+|+++++..
T Consensus 169 v~~AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 169 VEVAQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred hHHHHHHHhhcccccccccceeEEEEecCcce
Confidence 999999999985 33456788999998764
No 93
>KOG0131|consensus
Probab=99.20 E-value=1.6e-11 Score=103.44 Aligned_cols=81 Identities=21% Similarity=0.437 Sum_probs=76.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEc
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRV 176 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a 176 (348)
....+|||+||+..++++.|.++|-+.|.|.++.|++|+.+...+||||++|.++|+|+-|++.++ ..+.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 456899999999999999999999999999999999999999999999999999999999999997 7899999999998
Q ss_pred cc
Q psy1757 177 KF 178 (348)
Q Consensus 177 ~~ 178 (348)
..
T Consensus 87 s~ 88 (203)
T KOG0131|consen 87 SA 88 (203)
T ss_pred cc
Confidence 83
No 94
>KOG4454|consensus
Probab=99.20 E-value=5.7e-12 Score=108.96 Aligned_cols=137 Identities=20% Similarity=0.333 Sum_probs=112.5
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhC-CcccCCeecC
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG-DHYIGNKKID 88 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~-~~~~~gr~i~ 88 (348)
.+..+..+||||+|+...+|||-|.|+|-+-|+|..|.|..++ +++.| ||||.|+++-++.-|+++. +..+.+..++
T Consensus 3 aaaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q 80 (267)
T KOG4454|consen 3 AAAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQ 80 (267)
T ss_pred CCCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhh
Confidence 3456788999999999999999999999999999999998886 67777 9999999999999999974 3466666655
Q ss_pred cccccccccCCCceEEEcC----CCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHc
Q psy1757 89 PKRVTKRVNPLKCKIFVGG----LTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161 (348)
Q Consensus 89 v~~a~~~~~~~~~~l~V~n----Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~ 161 (348)
++ ++.++ |...++++.+.+.|+.-+.++.+++.++.+ ++.+.+.|+.+....+.-.++..
T Consensus 81 ~~------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~ 144 (267)
T KOG4454|consen 81 RT------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDL 144 (267)
T ss_pred cc------------cccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhh
Confidence 54 44555 777899999999999999999999988875 77888888887655544444443
No 95
>KOG0130|consensus
Probab=99.19 E-value=2.9e-11 Score=97.05 Aligned_cols=83 Identities=27% Similarity=0.469 Sum_probs=75.7
Q ss_pred CCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCC-cccCCeecCccc
Q psy1757 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGD-HYIGNKKIDPKR 91 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~-~~~~gr~i~v~~ 91 (348)
+.+.--|||.++..++||++|.+.|..||+|++|++..|+.||-.||||+|+|++.++|++||+..+ ..+.+..|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 4445679999999999999999999999999999999999999999999999999999999999654 799999999999
Q ss_pred cccc
Q psy1757 92 VTKR 95 (348)
Q Consensus 92 a~~~ 95 (348)
+-.+
T Consensus 149 ~Fv~ 152 (170)
T KOG0130|consen 149 CFVK 152 (170)
T ss_pred EEec
Confidence 7543
No 96
>KOG0126|consensus
Probab=99.18 E-value=1.8e-12 Score=109.00 Aligned_cols=79 Identities=34% Similarity=0.550 Sum_probs=73.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEcc
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVK 177 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~ 177 (348)
.+.-|||+|||..+||.||--+|++||+|++|.+++|+.||+++||||+.|++..+..-|+..+| ..|.||.|+|.-..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 45679999999999999999999999999999999999999999999999999999999999985 89999999997554
No 97
>KOG0114|consensus
Probab=99.18 E-value=1.2e-10 Score=89.45 Aligned_cols=81 Identities=22% Similarity=0.289 Sum_probs=67.7
Q ss_pred CCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhC-CcccCCeec
Q psy1757 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG-DHYIGNKKI 87 (348)
Q Consensus 9 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~-~~~~~gr~i 87 (348)
..-.++.++-|||.|||+++|.|++.++|.+||.|.+|+|=.. ...+|.|||.|++..+|++|++.+ +..+.++.+
T Consensus 11 ~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl 87 (124)
T KOG0114|consen 11 IRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYL 87 (124)
T ss_pred CCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCceE
Confidence 3445567899999999999999999999999999999998654 456799999999999999999864 456777777
Q ss_pred Ccccc
Q psy1757 88 DPKRV 92 (348)
Q Consensus 88 ~v~~a 92 (348)
.+...
T Consensus 88 ~vlyy 92 (124)
T KOG0114|consen 88 VVLYY 92 (124)
T ss_pred EEEec
Confidence 66554
No 98
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.16 E-value=8.8e-11 Score=106.86 Aligned_cols=79 Identities=23% Similarity=0.588 Sum_probs=75.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEccc
Q psy1757 100 KCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVKF 178 (348)
Q Consensus 100 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~~ 178 (348)
.++|||+||+..+++++|+++|.+||.|..+.+..++.++.++|+|||+|.+.++|..|++.++ ..|.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5999999999999999999999999999999999999899999999999999999999999996 899999999999764
No 99
>KOG0108|consensus
Probab=99.16 E-value=5.8e-11 Score=115.37 Aligned_cols=82 Identities=24% Similarity=0.488 Sum_probs=78.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEcccC
Q psy1757 101 CKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVKFN 179 (348)
Q Consensus 101 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~~~ 179 (348)
+.|||+|||+++++++|.++|+..|.|.+++++.|+++|++|||+|++|.+.++|++|++.++ .++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 889999999999999999999999999999999999999999999999999999999999996 8999999999998876
Q ss_pred CCC
Q psy1757 180 PET 182 (348)
Q Consensus 180 ~~~ 182 (348)
..+
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 553
No 100
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.16 E-value=1.7e-10 Score=83.66 Aligned_cols=73 Identities=32% Similarity=0.656 Sum_probs=66.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEE
Q psy1757 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKR 175 (348)
Q Consensus 102 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~ 175 (348)
+|+|++||..+++++|+++|+.+|.|..+.+..+..+ ..+++|||+|.+.++|..|++.++ ..++++++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999877655 678999999999999999999986 669999998864
No 101
>KOG4205|consensus
Probab=99.16 E-value=3.4e-11 Score=112.31 Aligned_cols=113 Identities=33% Similarity=0.540 Sum_probs=92.3
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCcccccc
Q psy1757 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVTK 94 (348)
Q Consensus 15 ~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~a~~ 94 (348)
..++|||++||.++++++|+++|++||.|..+.++.|+.+.+++||+||+|.+++++++++...-+.|+++.+.|+.+.+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccCCCceEEEcCCCC------CCCHHHHHHHHhhcCCc
Q psy1757 95 RVNPLKCKIFVGGLTT------EITEQDVRDYFSQYGSI 127 (348)
Q Consensus 95 ~~~~~~~~l~V~nLp~------~~te~~L~~~F~~~G~i 127 (348)
+......++.+..... ..+.-.|...|..|+.+
T Consensus 176 k~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~g~~~~ 214 (311)
T KOG4205|consen 176 KEVMQSTKSSVSTRGKGNNLGNGRTGFFLKKYFKGYGPV 214 (311)
T ss_pred hhhccccccccccccccccccccccccccchhccccCcc
Confidence 8766555443333332 22333444555555443
No 102
>KOG0120|consensus
Probab=99.14 E-value=8.3e-11 Score=115.04 Aligned_cols=162 Identities=23% Similarity=0.450 Sum_probs=133.5
Q ss_pred CCCCCEEEEcCCCCcccHHHHHHHhhcC-----------CC-eeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCc
Q psy1757 13 RNDERKLFVGGLHRNTGEKEINDYFSQY-----------GE-VESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDH 80 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~~L~~~F~~~-----------G~-v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~ 80 (348)
....+.++|++++..++++.+..+|..- |+ +..|.|-..+ .||||+|.+.++|..++.....
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~------nfa~ie~~s~~~at~~~~~~~~ 245 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK------NFAFIEFRSISEATEAMALDGI 245 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc------cceeEEecCCCchhhhhcccch
Confidence 4556889999999999999999999753 22 6666665544 5999999999999999988776
Q ss_pred ccCCeecCccccccc------------------------ccCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCC
Q psy1757 81 YIGNKKIDPKRVTKR------------------------VNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDK 136 (348)
Q Consensus 81 ~~~gr~i~v~~a~~~------------------------~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~ 136 (348)
.+.|..+.+...... .....++|+|++||..+++.+++++.+.||.+...+++.+.
T Consensus 246 ~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~ 325 (500)
T KOG0120|consen 246 IFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDS 325 (500)
T ss_pred hhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccc
Confidence 676665544332111 11234789999999999999999999999999999999999
Q ss_pred CCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEcccCC
Q psy1757 137 SKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVKFNP 180 (348)
Q Consensus 137 ~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~~~~ 180 (348)
.++.++||||.+|.+......|+..++ ..+.++++.|..+-...
T Consensus 326 ~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 326 ATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred ccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 999999999999999999999999996 77888999998776543
No 103
>KOG4210|consensus
Probab=99.14 E-value=1e-10 Score=108.65 Aligned_cols=169 Identities=22% Similarity=0.325 Sum_probs=139.0
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCc-ccCCeecCcccc
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDH-YIGNKKIDPKRV 92 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~-~~~gr~i~v~~a 92 (348)
....++|++++.+++.+.++..++...|.+..+.+........+++++.|.|+..+.+..+|..... .+.++.+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 3688999999999999999999999999888888877677889999999999999999999987553 344443333222
Q ss_pred cccc-----------cCCCceEE-EcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHH
Q psy1757 93 TKRV-----------NPLKCKIF-VGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK 160 (348)
Q Consensus 93 ~~~~-----------~~~~~~l~-V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~ 160 (348)
.... .....+++ |++|+..+++++|+.+|..++.|..+++..+..++..+|+++|+|.+...+..++.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 2211 11234455 99999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCeeCCeEEEEEEcccCCCC
Q psy1757 161 NPKQVICGKEVDVKRVKFNPET 182 (348)
Q Consensus 161 ~~~~~i~G~~i~v~~a~~~~~~ 182 (348)
.....+.++++.+....+....
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 246 DQTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred cccCcccCcccccccCCCCccc
Confidence 7347788999999888877654
No 104
>KOG0128|consensus
Probab=99.07 E-value=7e-12 Score=126.54 Aligned_cols=150 Identities=18% Similarity=0.246 Sum_probs=129.0
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCccccc
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVT 93 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~a~ 93 (348)
.+..++||.||+..+.+++|...|..++.+..++|...+.+++.||+|+|+|.+.+++.+||......+.+
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g--------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG--------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh---------
Confidence 34578999999999999999999999999998888767778999999999999999999999976655555
Q ss_pred ccccCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEE
Q psy1757 94 KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVD 172 (348)
Q Consensus 94 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~ 172 (348)
+.+++|.|+|+..|.++|+.++.++|.+++++++..+ .++++|.+||.|.++.++.+++.... ..++-..+.
T Consensus 736 ------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~ 808 (881)
T KOG0128|consen 736 ------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGE 808 (881)
T ss_pred ------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCcc
Confidence 2459999999999999999999999999999987776 48899999999999999999988874 455556666
Q ss_pred EEEcccC
Q psy1757 173 VKRVKFN 179 (348)
Q Consensus 173 v~~a~~~ 179 (348)
|....+.
T Consensus 809 v~vsnp~ 815 (881)
T KOG0128|consen 809 VQVSNPE 815 (881)
T ss_pred ccccCCc
Confidence 6665553
No 105
>KOG0114|consensus
Probab=99.07 E-value=4.1e-10 Score=86.53 Aligned_cols=77 Identities=18% Similarity=0.305 Sum_probs=68.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEEccc
Q psy1757 100 KCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKRVKF 178 (348)
Q Consensus 100 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~a~~ 178 (348)
++.|||.|||.++|.+++.++|.+||.|..|+|-..++ .+|.|||.|++..+|++|++.+ +..+.++.+.|-+-.+
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 57799999999999999999999999999999966544 5899999999999999999999 4789999999977655
Q ss_pred C
Q psy1757 179 N 179 (348)
Q Consensus 179 ~ 179 (348)
.
T Consensus 95 ~ 95 (124)
T KOG0114|consen 95 E 95 (124)
T ss_pred H
Confidence 4
No 106
>smart00361 RRM_1 RNA recognition motif.
Probab=99.05 E-value=6.2e-10 Score=81.66 Aligned_cols=60 Identities=20% Similarity=0.452 Sum_probs=51.9
Q ss_pred HHHHHHHhh----cCCCeeEEE-EeeCCCC--CCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCc
Q psy1757 30 EKEINDYFS----QYGEVESIS-IKNDPYT--GQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDP 89 (348)
Q Consensus 30 e~~L~~~F~----~~G~v~~i~-i~~d~~t--g~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v 89 (348)
+++|+++|+ +||.|.+|. |..++.+ +.++||+||+|.+.++|.+|++. ++..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999999996 7777666 89999999999999999999995 667888888754
No 107
>KOG0109|consensus
Probab=99.03 E-value=2.3e-10 Score=102.94 Aligned_cols=71 Identities=30% Similarity=0.591 Sum_probs=66.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEcccC
Q psy1757 101 CKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVKFN 179 (348)
Q Consensus 101 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~~~ 179 (348)
.+|||+|||..+++++|+.+|++||+|.+|+|+++ |+||..++...++.||..|+ .+|+|..|.|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999976 99999999999999999885 7899999999998877
No 108
>smart00361 RRM_1 RNA recognition motif.
Probab=99.02 E-value=6.6e-10 Score=81.51 Aligned_cols=60 Identities=22% Similarity=0.431 Sum_probs=52.9
Q ss_pred HHHHHHHHh----hcCCccccc-cCCCCCC--CccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEE
Q psy1757 114 EQDVRDYFS----QYGSITEFQ-QPFDKSK--NMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDV 173 (348)
Q Consensus 114 e~~L~~~F~----~~G~i~~v~-i~~~~~~--g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v 173 (348)
+++|+++|+ +||.|.+|. |+.++.+ +.++|++||+|.+.++|.+|++.++ ..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999985 6666666 8899999999999999999999985 8899999976
No 109
>KOG0132|consensus
Probab=99.01 E-value=4.9e-10 Score=112.25 Aligned_cols=101 Identities=22% Similarity=0.402 Sum_probs=80.8
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhC-CcccCCeecCccccc
Q psy1757 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG-DHYIGNKKIDPKRVT 93 (348)
Q Consensus 15 ~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~-~~~~~gr~i~v~~a~ 93 (348)
-++|||||+|+.+++|.||.++|++||+|++|.++.. ++||||.+.+.++|.+||.++ +..+..+.|++.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 3699999999999999999999999999999998865 489999999999999999864 578999999999997
Q ss_pred ccccCC------CceEEEcCCCCC-CCHHHHHHHHh
Q psy1757 94 KRVNPL------KCKIFVGGLTTE-ITEQDVRDYFS 122 (348)
Q Consensus 94 ~~~~~~------~~~l~V~nLp~~-~te~~L~~~F~ 122 (348)
.+-... +..+=|.-||++ ++.+ |+.+++
T Consensus 494 g~G~kse~k~~wD~~lGVt~IP~~kLt~d-l~~~~e 528 (894)
T KOG0132|consen 494 GKGPKSEYKDYWDVELGVTYIPWEKLTDD-LEAWCE 528 (894)
T ss_pred cCCcchhhhhhhhcccCeeEeehHhcCHH-HHHhhh
Confidence 664333 223445667776 4444 555443
No 110
>KOG0415|consensus
Probab=98.99 E-value=7.2e-10 Score=102.13 Aligned_cols=84 Identities=21% Similarity=0.347 Sum_probs=78.1
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEE
Q psy1757 96 VNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVK 174 (348)
Q Consensus 96 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~ 174 (348)
..+....|||..|.+-+++++|.-+|+.||.|..|+|++|..|+.+-.||||+|++.+++++|.-+| |..|+++.|.|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 3567789999999999999999999999999999999999999999999999999999999999988 688999999998
Q ss_pred EcccC
Q psy1757 175 RVKFN 179 (348)
Q Consensus 175 ~a~~~ 179 (348)
++..-
T Consensus 315 FSQSV 319 (479)
T KOG0415|consen 315 FSQSV 319 (479)
T ss_pred hhhhh
Confidence 87654
No 111
>KOG0415|consensus
Probab=98.97 E-value=6.8e-10 Score=102.27 Aligned_cols=83 Identities=22% Similarity=0.386 Sum_probs=75.6
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCcc
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPK 90 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~ 90 (348)
.....+.|||..|.+-+|+++|.-+|+.||.|.+|.|++|..||.+..||||+|++.+++++|.- +.+..|..+.|.|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 34567899999999999999999999999999999999999999999999999999999999975 56778999999888
Q ss_pred cccc
Q psy1757 91 RVTK 94 (348)
Q Consensus 91 ~a~~ 94 (348)
.+.+
T Consensus 315 FSQS 318 (479)
T KOG0415|consen 315 FSQS 318 (479)
T ss_pred hhhh
Confidence 7654
No 112
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.96 E-value=1.3e-09 Score=76.20 Aligned_cols=55 Identities=20% Similarity=0.460 Sum_probs=48.7
Q ss_pred HHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEc
Q psy1757 117 VRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRV 176 (348)
Q Consensus 117 L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a 176 (348)
|+++|++||+|+++.+..+. +++|||+|.+.++|++|++.++ ..++|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997764 5799999999999999999875 8899999999985
No 113
>KOG0153|consensus
Probab=98.94 E-value=1.7e-09 Score=99.63 Aligned_cols=77 Identities=30% Similarity=0.516 Sum_probs=69.3
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-C-CeeCCeEEEE
Q psy1757 96 VNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-K-QVICGKEVDV 173 (348)
Q Consensus 96 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~-~~i~G~~i~v 173 (348)
......+|||++|-..++|.+|+++|.+||+|+.|.++.. +++|||+|.+.++|+.|.++. + ..|+|.+|.|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 3445689999999999999999999999999999999765 459999999999999999886 4 7899999999
Q ss_pred EEccc
Q psy1757 174 KRVKF 178 (348)
Q Consensus 174 ~~a~~ 178 (348)
.|..+
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99888
No 114
>KOG0146|consensus
Probab=98.93 E-value=1.5e-09 Score=96.62 Aligned_cols=85 Identities=22% Similarity=0.343 Sum_probs=75.9
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhC-CcccCCeecCcc
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG-DHYIGNKKIDPK 90 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~-~~~~~gr~i~v~ 90 (348)
+-.+.|.|||-.||.+..+.||..+|-.||.|++.+|..|+.|+.||.|+||.|.++.+++.||..+ +-.|.-++|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 4467899999999999999999999999999999999999999999999999999999999999974 457777888877
Q ss_pred cccccc
Q psy1757 91 RVTKRV 96 (348)
Q Consensus 91 ~a~~~~ 96 (348)
..+++.
T Consensus 361 LKRPkd 366 (371)
T KOG0146|consen 361 LKRPKD 366 (371)
T ss_pred hcCccc
Confidence 765543
No 115
>KOG0116|consensus
Probab=98.93 E-value=8.5e-09 Score=99.85 Aligned_cols=82 Identities=24% Similarity=0.426 Sum_probs=68.0
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCcc
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPK 90 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~ 90 (348)
....+..+|||+|||.++++++|+++|+.||+|+...|......++..+|+||+|++.++++.+|++....++++++.|+
T Consensus 283 ~~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 283 EPRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVE 362 (419)
T ss_pred ceeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEE
Confidence 34455567999999999999999999999999999888764433445589999999999999999998778888877666
Q ss_pred cc
Q psy1757 91 RV 92 (348)
Q Consensus 91 ~a 92 (348)
..
T Consensus 363 ek 364 (419)
T KOG0116|consen 363 EK 364 (419)
T ss_pred ec
Confidence 43
No 116
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.92 E-value=3.1e-09 Score=74.24 Aligned_cols=55 Identities=24% Similarity=0.491 Sum_probs=47.7
Q ss_pred HHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCcccc
Q psy1757 33 INDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKRV 92 (348)
Q Consensus 33 L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~a 92 (348)
|.++|++||+|++|.+..++ +++|||+|.+.++|++|++ +++..+.|++|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997754 5799999999999999998 5778899999988764
No 117
>KOG0226|consensus
Probab=98.91 E-value=7.4e-10 Score=98.03 Aligned_cols=166 Identities=16% Similarity=0.256 Sum_probs=127.8
Q ss_pred CCCCEEEEcCCCCcccHHH-H--HHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhC-CcccCCeecCc
Q psy1757 14 NDERKLFVGGLHRNTGEKE-I--NDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG-DHYIGNKKIDP 89 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~-L--~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~-~~~~~gr~i~v 89 (348)
...-.+|++++-.++..+- | ...|+.+-.+...+++++. .+.-++++|+.|.....-.++-... .+++....+++
T Consensus 94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~ 172 (290)
T KOG0226|consen 94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRL 172 (290)
T ss_pred cccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceee
Confidence 3345677777777776655 3 5677777777777777765 6677889999998877766665543 34444444444
Q ss_pred cccccc-------ccCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC
Q psy1757 90 KRVTKR-------VNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP 162 (348)
Q Consensus 90 ~~a~~~-------~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~ 162 (348)
...+.- ....+.+||.+.|..+++++.|-..|.+|-.....++++|+-+++++||+||.|.+..++.+|+..+
T Consensus 173 a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem 252 (290)
T KOG0226|consen 173 AAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREM 252 (290)
T ss_pred ccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhh
Confidence 332222 2334689999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CeeCCeEEEEEEcccCC
Q psy1757 163 K-QVICGKEVDVKRVKFNP 180 (348)
Q Consensus 163 ~-~~i~G~~i~v~~a~~~~ 180 (348)
+ ..++.+.|.++....++
T Consensus 253 ~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 253 NGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred cccccccchhHhhhhhHHh
Confidence 6 78899999887766654
No 118
>KOG0112|consensus
Probab=98.87 E-value=9.8e-10 Score=111.74 Aligned_cols=162 Identities=19% Similarity=0.271 Sum_probs=126.4
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhC-CcccCCeecCc
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG-DHYIGNKKIDP 89 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~-~~~~~gr~i~v 89 (348)
.+...+++||++||+..+++.+|+..|..+|.|.+|.|...+ -+.-.-|+||.|.+.+.+-+|.... ...|..-.+++
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 445678999999999999999999999999999999998764 3344458999999988877766543 33343334444
Q ss_pred ccccccccCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCC
Q psy1757 90 KRVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICG 168 (348)
Q Consensus 90 ~~a~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G 168 (348)
..... .....+.+||++|..++....|...|..||.|..|.+-... -|++|.|++...++.|+..+ ...|.+
T Consensus 446 glG~~-kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq------~yayi~yes~~~aq~a~~~~rgap~G~ 518 (975)
T KOG0112|consen 446 GLGQP-KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ------PYAYIQYESPPAAQAATHDMRGAPLGG 518 (975)
T ss_pred ccccc-ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC------cceeeecccCccchhhHHHHhcCcCCC
Confidence 43332 34456789999999999999999999999999998875432 39999999999999999987 455654
Q ss_pred --eEEEEEEcccCC
Q psy1757 169 --KEVDVKRVKFNP 180 (348)
Q Consensus 169 --~~i~v~~a~~~~ 180 (348)
+.+.|.++.+..
T Consensus 519 P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 519 PPRRLRVDLASPPG 532 (975)
T ss_pred CCcccccccccCCC
Confidence 668888877653
No 119
>KOG0153|consensus
Probab=98.85 E-value=6.5e-09 Score=95.84 Aligned_cols=80 Identities=33% Similarity=0.500 Sum_probs=70.5
Q ss_pred CCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh--CCcccCCee
Q psy1757 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA--GDHYIGNKK 86 (348)
Q Consensus 9 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~--~~~~~~gr~ 86 (348)
..++....++|||++|-..++|.+|+++|.+||+|++|.+...+ ++|||+|.+.++|++|.+. +...|+|.+
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 34556667999999999999999999999999999999998765 6999999999999999875 445889999
Q ss_pred cCcccccc
Q psy1757 87 IDPKRVTK 94 (348)
Q Consensus 87 i~v~~a~~ 94 (348)
|.+.|...
T Consensus 295 l~i~Wg~~ 302 (377)
T KOG0153|consen 295 LKIKWGRP 302 (377)
T ss_pred EEEEeCCC
Confidence 99999876
No 120
>KOG1456|consensus
Probab=98.84 E-value=6.4e-08 Score=90.05 Aligned_cols=151 Identities=17% Similarity=0.174 Sum_probs=118.6
Q ss_pred CCCCCCCEEEEcCCCCc-ccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecC
Q psy1757 11 PGRNDERKLFVGGLHRN-TGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKID 88 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~ 88 (348)
....+.+.+.|-+|... ++-+.|.++|..||.|+.|++++.+. |-|.|++-|..++++||.. ++..+-|.+|.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-----gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-----ceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 34556789999999976 46788999999999999999998763 6899999999999999985 55667777777
Q ss_pred ccccccc--------------------------------------ccCCCceEEEcCCCCCCCHHHHHHHHhhcCC-ccc
Q psy1757 89 PKRVTKR--------------------------------------VNPLKCKIFVGGLTTEITEQDVRDYFSQYGS-ITE 129 (348)
Q Consensus 89 v~~a~~~--------------------------------------~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~ 129 (348)
+..++.. ..+.++.|+.-|.|..+||+.|.++|..... -.+
T Consensus 357 v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~s 436 (494)
T KOG1456|consen 357 VCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTS 436 (494)
T ss_pred EeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcce
Confidence 6655432 1123578999999999999999999987653 456
Q ss_pred cccCCCCCCCccceEEEEEECCHHHHHHHHHcCCC-eeCC
Q psy1757 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQ-VICG 168 (348)
Q Consensus 130 v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~-~i~G 168 (348)
|+|+..+ +.++ -.+.+||++.++|..||.++|+ .|++
T Consensus 437 vkvFp~k-serS-ssGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 437 VKVFPLK-SERS-SSGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred EEeeccc-cccc-ccceeeeehHHHHHHHHHHhccccccC
Confidence 7776655 3333 3579999999999999999874 3544
No 121
>KOG1365|consensus
Probab=98.82 E-value=4.6e-09 Score=97.76 Aligned_cols=165 Identities=18% Similarity=0.247 Sum_probs=120.6
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCccc
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKR 91 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~ 91 (348)
..+++..|-.++|||..++.+|..+|+-.-...-...+.....++..|.+.|.|.|+|.-+.|++.+.+-+.++.|.+-.
T Consensus 56 ~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYk 135 (508)
T KOG1365|consen 56 SADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYK 135 (508)
T ss_pred ccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeec
Confidence 34555667788999999999999999855332222222223456677899999999999999999888888888887765
Q ss_pred ccccc-----------------cCCCceEEEcCCCCCCCHHHHHHHHhh---c-CCccccccCCCCCCCccceEEEEEEC
Q psy1757 92 VTKRV-----------------NPLKCKIFVGGLTTEITEQDVRDYFSQ---Y-GSITEFQQPFDKSKNMKKGFCFISFD 150 (348)
Q Consensus 92 a~~~~-----------------~~~~~~l~V~nLp~~~te~~L~~~F~~---~-G~i~~v~i~~~~~~g~~rG~aFV~F~ 150 (348)
+...+ +...-.|.+.+||.++++.|+.++|.. . +..+.|-+++ +.+++..|-|||.|.
T Consensus 136 a~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~-rpdgrpTGdAFvlfa 214 (508)
T KOG1365|consen 136 ATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVT-RPDGRPTGDAFVLFA 214 (508)
T ss_pred cCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEE-CCCCCcccceEEEec
Confidence 54321 111245678899999999999999963 2 2344444443 345888899999999
Q ss_pred CHHHHHHHHHcCCCeeCCeEEEEEEcc
Q psy1757 151 DQNVADQVLKNPKQVICGKEVDVKRVK 177 (348)
Q Consensus 151 ~~e~A~~Al~~~~~~i~G~~i~v~~a~ 177 (348)
.+++|+.||.+....|.-|-|++-++.
T Consensus 215 ~ee~aq~aL~khrq~iGqRYIElFRST 241 (508)
T KOG1365|consen 215 CEEDAQFALRKHRQNIGQRYIELFRST 241 (508)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 999999999997777777777664443
No 122
>KOG0132|consensus
Probab=98.81 E-value=6.7e-09 Score=104.25 Aligned_cols=76 Identities=21% Similarity=0.395 Sum_probs=69.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEEccc
Q psy1757 100 KCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKRVKF 178 (348)
Q Consensus 100 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~a~~ 178 (348)
++||||+.|+..++|+||+++|+.||.|++|.++.. ++||||++....+|.+|+.+| +..+.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 389999999999999999999999999999998654 789999999999999999999 5889999999999987
Q ss_pred CCC
Q psy1757 179 NPE 181 (348)
Q Consensus 179 ~~~ 181 (348)
+..
T Consensus 495 ~G~ 497 (894)
T KOG0132|consen 495 KGP 497 (894)
T ss_pred CCc
Confidence 654
No 123
>KOG4849|consensus
Probab=98.73 E-value=3.1e-07 Score=84.83 Aligned_cols=76 Identities=17% Similarity=0.289 Sum_probs=66.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcC--CccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEE
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQYG--SITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVK 174 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~ 174 (348)
+...+||+||-|++|++||.+.+...| .+.+++++.++.+|.+||||+|...+..+.++.++.+ ..+|.|..-.|.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 346799999999999999999998766 6788999999999999999999999999999999998 478888765553
No 124
>KOG4208|consensus
Probab=98.72 E-value=3.3e-08 Score=85.33 Aligned_cols=82 Identities=22% Similarity=0.404 Sum_probs=68.4
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcC-CCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCc-ccCCeec
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQY-GEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDH-YIGNKKI 87 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~-G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~-~~~gr~i 87 (348)
.+.......++|..||.-+.+.+|..+|.+| |.|..+++-+++.||.|||||||+|++++.|+-|-+.++. .|.++.|
T Consensus 43 ~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL 122 (214)
T KOG4208|consen 43 KPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLL 122 (214)
T ss_pred CCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhee
Confidence 4455667789999999999999999999988 7888899989999999999999999999999988886554 4555555
Q ss_pred Cccc
Q psy1757 88 DPKR 91 (348)
Q Consensus 88 ~v~~ 91 (348)
.+..
T Consensus 123 ~c~v 126 (214)
T KOG4208|consen 123 ECHV 126 (214)
T ss_pred eeEE
Confidence 4443
No 125
>KOG4661|consensus
Probab=98.72 E-value=2.4e-08 Score=97.16 Aligned_cols=81 Identities=17% Similarity=0.410 Sum_probs=75.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEccc
Q psy1757 100 KCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVKF 178 (348)
Q Consensus 100 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~~ 178 (348)
.+.|||.+|...+...+|+.+|++||+|+-.+|+++.-+--.++|+||++.+.++|.+||+.|. .+|.|+.|.|..++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 3789999999999999999999999999999999987777789999999999999999999995 899999999999886
Q ss_pred CC
Q psy1757 179 NP 180 (348)
Q Consensus 179 ~~ 180 (348)
..
T Consensus 485 Ep 486 (940)
T KOG4661|consen 485 EP 486 (940)
T ss_pred Cc
Confidence 54
No 126
>KOG4661|consensus
Probab=98.69 E-value=3.6e-08 Score=95.94 Aligned_cols=81 Identities=21% Similarity=0.394 Sum_probs=72.8
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCcccc
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDPKRV 92 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v~~a 92 (348)
.-.+.|||.+|+..+...+|+.+|++||.|+-.+|+.+..+--.++|+||++.+.++|.+||+. +..+|+|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 3468899999999999999999999999999999999887777889999999999999999985 567999999999887
Q ss_pred cc
Q psy1757 93 TK 94 (348)
Q Consensus 93 ~~ 94 (348)
++
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 53
No 127
>KOG4208|consensus
Probab=98.59 E-value=7.1e-08 Score=83.26 Aligned_cols=82 Identities=18% Similarity=0.434 Sum_probs=73.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhc-CCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEE
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQY-GSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKR 175 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~-G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~ 175 (348)
.....++|..+|.-+.+.+|..+|.+| |.|..+++-+++.||.+||||||+|++++.|+-|.+.|| ..+.++-|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 344678999999999999999999998 778888888999999999999999999999999999995 778899999988
Q ss_pred cccC
Q psy1757 176 VKFN 179 (348)
Q Consensus 176 a~~~ 179 (348)
..+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 7765
No 128
>KOG4206|consensus
Probab=98.58 E-value=9.5e-08 Score=83.70 Aligned_cols=81 Identities=19% Similarity=0.390 Sum_probs=72.0
Q ss_pred CCceEEEcCCCCCCCHHHHHH----HHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEE
Q psy1757 99 LKCKIFVGGLTTEITEQDVRD----YFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDV 173 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~----~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v 173 (348)
.+.||||.||++.+..++|+. +|++||+|.+|...+ +.+.||-|||.|.+.+.|..|+..+ +.-+.|+++++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 345999999999999999998 999999999998765 4567999999999999999999998 58899999999
Q ss_pred EEcccCCCC
Q psy1757 174 KRVKFNPET 182 (348)
Q Consensus 174 ~~a~~~~~~ 182 (348)
.+|+.+..-
T Consensus 85 qyA~s~sdi 93 (221)
T KOG4206|consen 85 QYAKSDSDI 93 (221)
T ss_pred ecccCccch
Confidence 999987653
No 129
>KOG4209|consensus
Probab=98.57 E-value=7.3e-08 Score=86.85 Aligned_cols=83 Identities=18% Similarity=0.362 Sum_probs=77.0
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCcc
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPK 90 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~ 90 (348)
....+.+.+||+|+...+|.++|...|+.||.|..+.|..|+.++.+|||+||+|.+.+.++.++.++...|.++.|.+.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 55678899999999999999999999999999999999999999999999999999999999999988889999988887
Q ss_pred ccc
Q psy1757 91 RVT 93 (348)
Q Consensus 91 ~a~ 93 (348)
+..
T Consensus 176 ~~r 178 (231)
T KOG4209|consen 176 LKR 178 (231)
T ss_pred eee
Confidence 654
No 130
>KOG2193|consensus
Probab=98.57 E-value=1.4e-08 Score=95.61 Aligned_cols=152 Identities=14% Similarity=0.256 Sum_probs=119.3
Q ss_pred CEEEEcCCCCcccHHHHHHHhhcCCC--eeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCC--cccCCeecCcccc
Q psy1757 17 RKLFVGGLHRNTGEKEINDYFSQYGE--VESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGD--HYIGNKKIDPKRV 92 (348)
Q Consensus 17 ~~lfVgnLp~~~te~~L~~~F~~~G~--v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~--~~~~gr~i~v~~a 92 (348)
++|||+||.+.++.++|..+|...-. -..+ +++ .||+||.+.+...|.+|++.++ .++.|+.+.+..+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f-l~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF-LVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce-eee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 57999999999999999999975421 1122 222 2799999999999999999765 4788999999887
Q ss_pred cccccCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCC-CCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeE
Q psy1757 93 TKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPF-DKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKE 170 (348)
Q Consensus 93 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~ 170 (348)
.++.. +++++-|.|+|+...|+.|..+...||.++.|.++. +.++- ..-|+|.+.+.+..||.+++ ..+....
T Consensus 74 v~kkq-rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~eta----vvnvty~~~~~~~~ai~kl~g~Q~en~~ 148 (584)
T KOG2193|consen 74 VPKKQ-RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETA----VVNVTYSAQQQHRQAIHKLNGPQLENQH 148 (584)
T ss_pred hhHHH-HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHH----HHHHHHHHHHHHHHHHHhhcchHhhhhh
Confidence 66543 456799999999999999999999999999998743 22221 33468889999999999985 7788888
Q ss_pred EEEEEcccCCC
Q psy1757 171 VDVKRVKFNPE 181 (348)
Q Consensus 171 i~v~~a~~~~~ 181 (348)
+.+.+.-....
T Consensus 149 ~k~~YiPdeq~ 159 (584)
T KOG2193|consen 149 LKVGYIPDEQN 159 (584)
T ss_pred hhcccCchhhh
Confidence 88877655543
No 131
>KOG0533|consensus
Probab=98.44 E-value=5.4e-07 Score=81.22 Aligned_cols=81 Identities=15% Similarity=0.347 Sum_probs=70.7
Q ss_pred CCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCccc
Q psy1757 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDPKR 91 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v~~ 91 (348)
+..+.+|.|.||+..+++++|+++|++||.++.+.|..++ +|.+.|.|-|.|...++|++|++. ++..++|+.+.+..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3445789999999999999999999999999999998886 899999999999999999999985 55788888877665
Q ss_pred ccc
Q psy1757 92 VTK 94 (348)
Q Consensus 92 a~~ 94 (348)
...
T Consensus 159 i~~ 161 (243)
T KOG0533|consen 159 ISS 161 (243)
T ss_pred ecC
Confidence 543
No 132
>KOG4660|consensus
Probab=98.44 E-value=2.9e-07 Score=89.90 Aligned_cols=157 Identities=18% Similarity=0.200 Sum_probs=105.2
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhC-CcccCCeecC
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG-DHYIGNKKID 88 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~-~~~~~gr~i~ 88 (348)
.+.....++|+|-|||.++++++|.++|+.||+|..|+... ..+|.+||+|-|..+|+.|+++. ..++.++.|.
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34456689999999999999999999999999999976544 34689999999999999999864 4577777776
Q ss_pred ccccccccc-----------------------CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEE
Q psy1757 89 PKRVTKRVN-----------------------PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFC 145 (348)
Q Consensus 89 v~~a~~~~~-----------------------~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~a 145 (348)
......+.. -....++ +.|++..+...++..+.-+|.++. +. ++.-+-.-
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~-g~l~P~~s~~~~~~~~~~~~~~~~-~~-----~~~~~hq~ 216 (549)
T KOG4660|consen 144 RPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLF-GMLSPTRSSILLEHISSVDGSSPG-RE-----TPLLNHQR 216 (549)
T ss_pred CCCcccccchhcccchhhhhccchhhcCCCCCCcCCcce-eeeccchhhhhhhcchhccCcccc-cc-----ccchhhhh
Confidence 332222110 0012232 338888877666666666776654 22 22222245
Q ss_pred EEEECCHHHHHHHHHcCCCeeCCeEEEEEEccc
Q psy1757 146 FISFDDQNVADQVLKNPKQVICGKEVDVKRVKF 178 (348)
Q Consensus 146 FV~F~~~e~A~~Al~~~~~~i~G~~i~v~~a~~ 178 (348)
|++|.+..++..+....+..+.++...+.++.+
T Consensus 217 ~~~~~~~~s~a~~~~~~G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 217 FVEFADNRSYAFSEPRGGFLISNSSGVITFSGP 249 (549)
T ss_pred hhhhccccchhhcccCCceecCCCCceEEecCC
Confidence 788888888755555444556666555555443
No 133
>KOG4307|consensus
Probab=98.43 E-value=1e-06 Score=87.91 Aligned_cols=75 Identities=16% Similarity=0.302 Sum_probs=64.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEE
Q psy1757 101 CKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKR 175 (348)
Q Consensus 101 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~ 175 (348)
+.|-+.|+|++++.+||.++|..|-.+-.-.+++-.+.|...|-|.|-|++.++|.+|.+.++ ..|..++|.+.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 468899999999999999999999876654455556678999999999999999999999985 789999988864
No 134
>KOG0226|consensus
Probab=98.37 E-value=5.1e-07 Score=80.26 Aligned_cols=85 Identities=18% Similarity=0.431 Sum_probs=74.5
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCc
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDP 89 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v 89 (348)
+..++.-+||.|.|..+++++-|...|++|-.-...++++|+.|++++||+||.|.+..++..|++. ++..++.+.|.+
T Consensus 185 ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 185 EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 3456678999999999999999999999998888889999999999999999999999999999986 457888888877
Q ss_pred cccccc
Q psy1757 90 KRVTKR 95 (348)
Q Consensus 90 ~~a~~~ 95 (348)
..+..+
T Consensus 265 RkS~wk 270 (290)
T KOG0226|consen 265 RKSEWK 270 (290)
T ss_pred hhhhHH
Confidence 766544
No 135
>KOG4209|consensus
Probab=98.37 E-value=7.2e-07 Score=80.45 Aligned_cols=84 Identities=21% Similarity=0.339 Sum_probs=77.0
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEE
Q psy1757 96 VNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175 (348)
Q Consensus 96 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~ 175 (348)
.......+||+|+...++.++++.+|+.||.|..+.|+.|+..+.+|||+||+|.+.+.++.++......|.++.+.|.+
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTL 176 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeee
Confidence 34456889999999999999999999999999999999999999999999999999999999999556899999999998
Q ss_pred cccC
Q psy1757 176 VKFN 179 (348)
Q Consensus 176 a~~~ 179 (348)
.+.+
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 8776
No 136
>KOG4307|consensus
Probab=98.35 E-value=9.1e-07 Score=88.21 Aligned_cols=162 Identities=10% Similarity=0.076 Sum_probs=121.3
Q ss_pred CCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCcccc
Q psy1757 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRV 92 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~a 92 (348)
..+.+.+-+.+.++++++.+++++|--. -|..+.|.++.......|-++|+|....++++|++.+...+-.|.+.+...
T Consensus 308 v~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~ 386 (944)
T KOG4307|consen 308 VSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPP 386 (944)
T ss_pred cchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCC
Confidence 3566777778999999999999998533 345555666654444468899999999999999998877777776665443
Q ss_pred cccc----------------------------------------cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccc-cc
Q psy1757 93 TKRV----------------------------------------NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITE-FQ 131 (348)
Q Consensus 93 ~~~~----------------------------------------~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-v~ 131 (348)
.... ......|||..||..+++.++.++|...-.|++ |.
T Consensus 387 g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~ 466 (944)
T KOG4307|consen 387 GNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIE 466 (944)
T ss_pred CccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeE
Confidence 2210 001267999999999999999999998878877 55
Q ss_pred cCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEEc
Q psy1757 132 QPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKRV 176 (348)
Q Consensus 132 i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~a 176 (348)
|. ...+++.++.|||+|..++++.+|+.-. ++.+.-+.|+|...
T Consensus 467 lt-~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 467 LT-RLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ec-cCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 53 4456778899999999987777766544 57777788888643
No 137
>KOG0533|consensus
Probab=98.35 E-value=1.1e-06 Score=79.14 Aligned_cols=83 Identities=16% Similarity=0.373 Sum_probs=73.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEc
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRV 176 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a 176 (348)
....+|+|.||+..++++||+++|+.|+.++.+-|..++ .+++.|.|-|.|...++|.+|++.++ ..++|+.+.+..+
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 345789999999999999999999999988888887775 58899999999999999999999984 8899999999877
Q ss_pred ccCCC
Q psy1757 177 KFNPE 181 (348)
Q Consensus 177 ~~~~~ 181 (348)
.....
T Consensus 160 ~~~~~ 164 (243)
T KOG0533|consen 160 SSPSQ 164 (243)
T ss_pred cCccc
Confidence 65543
No 138
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.27 E-value=4.8e-06 Score=64.62 Aligned_cols=67 Identities=16% Similarity=0.263 Sum_probs=58.1
Q ss_pred CEEEEcCCCCcccHHHHHHHhhcC--CCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeec
Q psy1757 17 RKLFVGGLHRNTGEKEINDYFSQY--GEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKI 87 (348)
Q Consensus 17 ~~lfVgnLp~~~te~~L~~~F~~~--G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i 87 (348)
+||.|+|||...|.++|.+++... |...-+-++.|-.++.+.|||||-|.+.++|.+..+. ++|++.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~----f~g~~w 70 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKA----FNGKKW 70 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHH----HcCCcc
Confidence 689999999999999999999643 6777788899988999999999999999999999887 555444
No 139
>KOG4676|consensus
Probab=98.23 E-value=6.9e-07 Score=83.73 Aligned_cols=148 Identities=10% Similarity=0.156 Sum_probs=112.7
Q ss_pred CCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCC---CCcceEEEEEecCHHHHHHHHHhCCcccCCeecCcccc
Q psy1757 16 ERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYT---GQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRV 92 (348)
Q Consensus 16 ~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~t---g~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~a 92 (348)
...|-|.||.+.+|.+.+..+|.-.|+|.++.|+.+..+ ....-.|||.|.|..++..|..+.+..|-++.|.|...
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 348999999999999999999999999999999764322 23445899999999999999888777666665544322
Q ss_pred cccc---------------------------------------------------------cCCCceEEEcCCCCCCCHH
Q psy1757 93 TKRV---------------------------------------------------------NPLKCKIFVGGLTTEITEQ 115 (348)
Q Consensus 93 ~~~~---------------------------------------------------------~~~~~~l~V~nLp~~~te~ 115 (348)
.... ....++|+|.+|...+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 1100 0012679999999999999
Q ss_pred HHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeC
Q psy1757 116 DVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVIC 167 (348)
Q Consensus 116 ~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~ 167 (348)
++-+.|+.+|.|....+-... ..-+|-|+|........|+..++.++.
T Consensus 167 e~~e~f~r~Gev~ya~~ask~----~s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKS----RSSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred hhhhhhhhcchhhhhhhhccC----CCcchhhhHhhhhhHHHHHHhcchhhh
Confidence 999999999998877664332 233777999988888888888765444
No 140
>KOG0128|consensus
Probab=98.21 E-value=1.4e-07 Score=95.99 Aligned_cols=155 Identities=15% Similarity=0.195 Sum_probs=123.3
Q ss_pred CCCCEEEEcCCCCcccHH-HHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCcccc
Q psy1757 14 NDERKLFVGGLHRNTGEK-EINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRV 92 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~-~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~a 92 (348)
-..+.+.+.++.+...+. .++..|..++.|+.|++......-....+.++++....+++.+.......+.++.+.+..+
T Consensus 569 ~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 569 LERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCC
Confidence 345667788888887666 5678889999999999876332222333889999999999999988777788887777666
Q ss_pred cccccC-----------CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHc
Q psy1757 93 TKRVNP-----------LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161 (348)
Q Consensus 93 ~~~~~~-----------~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~ 161 (348)
..+... ..+++||.||+..+.+++|...|..++.++.++|......++.||.|+++|.+++.+.+||..
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f 728 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF 728 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh
Confidence 544321 236799999999999999999999999999988886777889999999999999999999988
Q ss_pred CCCeeCC
Q psy1757 162 PKQVICG 168 (348)
Q Consensus 162 ~~~~i~G 168 (348)
....+-|
T Consensus 729 ~d~~~~g 735 (881)
T KOG0128|consen 729 RDSCFFG 735 (881)
T ss_pred hhhhhhh
Confidence 7544444
No 141
>KOG0106|consensus
Probab=98.20 E-value=2.2e-06 Score=75.79 Aligned_cols=72 Identities=26% Similarity=0.601 Sum_probs=63.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEcccC
Q psy1757 101 CKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVKFN 179 (348)
Q Consensus 101 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~~~ 179 (348)
.++||++|++.+.+.+|..+|..||.|.++.+. .||+||+|.+..+|..|+..++ ..|.+..+.|++++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 469999999999999999999999999988773 3589999999999999999885 7788888888887765
Q ss_pred C
Q psy1757 180 P 180 (348)
Q Consensus 180 ~ 180 (348)
.
T Consensus 74 ~ 74 (216)
T KOG0106|consen 74 R 74 (216)
T ss_pred c
Confidence 4
No 142
>KOG1995|consensus
Probab=98.18 E-value=7.4e-06 Score=76.42 Aligned_cols=85 Identities=25% Similarity=0.359 Sum_probs=75.4
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCcc--------ccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeC
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSIT--------EFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVIC 167 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~ 167 (348)
.....+|||-+|+..+++++|.++|.+++.|+ .|.|-++++|+..|+-|.|.|.++..|+.||+... ..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34567899999999999999999999999876 46777889999999999999999999999999984 8899
Q ss_pred CeEEEEEEcccCCC
Q psy1757 168 GKEVDVKRVKFNPE 181 (348)
Q Consensus 168 G~~i~v~~a~~~~~ 181 (348)
+..|+|..+..+..
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999988887653
No 143
>KOG1457|consensus
Probab=98.13 E-value=1.4e-05 Score=70.00 Aligned_cols=86 Identities=15% Similarity=0.288 Sum_probs=66.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCC-CCCCCccceEEEEEECCHHHHHHHHHcCC-CeeC---CeEEEE
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPF-DKSKNMKKGFCFISFDDQNVADQVLKNPK-QVIC---GKEVDV 173 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~---G~~i~v 173 (348)
.-++|||.+||.++...+|..+|..|-.-+.+.+.. ++.....+-+|||+|.+..+|.+|+..++ ..|+ +..+++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 358999999999999999999999986666554432 22223345699999999999999999986 5553 678899
Q ss_pred EEcccCCCCCC
Q psy1757 174 KRVKFNPETMG 184 (348)
Q Consensus 174 ~~a~~~~~~~~ 184 (348)
++++.+..+.+
T Consensus 113 ElAKSNtK~kr 123 (284)
T KOG1457|consen 113 ELAKSNTKRKR 123 (284)
T ss_pred eehhcCccccc
Confidence 99888776543
No 144
>KOG1995|consensus
Probab=98.13 E-value=3.8e-06 Score=78.36 Aligned_cols=89 Identities=24% Similarity=0.350 Sum_probs=77.2
Q ss_pred CCCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCee--------EEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-C
Q psy1757 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVE--------SISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-G 78 (348)
Q Consensus 8 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~--------~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~ 78 (348)
+.........+|||-+||..+++++|.++|.+++.|. .|+|-+|++|++.||-|.|+|+|..+|++||.. .
T Consensus 58 ~~~~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~a 137 (351)
T KOG1995|consen 58 SSMADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFA 137 (351)
T ss_pred CccccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhc
Confidence 3455577889999999999999999999999999885 488889999999999999999999999999985 5
Q ss_pred CcccCCeecCcccccccc
Q psy1757 79 DHYIGNKKIDPKRVTKRV 96 (348)
Q Consensus 79 ~~~~~gr~i~v~~a~~~~ 96 (348)
...+.+..|+|..+..+.
T Consensus 138 gkdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 138 GKDFCGNTIKVSLAERRT 155 (351)
T ss_pred cccccCCCchhhhhhhcc
Confidence 678888888888776543
No 145
>KOG4660|consensus
Probab=98.10 E-value=2.3e-06 Score=83.73 Aligned_cols=71 Identities=25% Similarity=0.459 Sum_probs=62.4
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVD 172 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~ 172 (348)
....++|+|-|||..+++++|+++|+.||+|+.|+.... .+|.+||+|-|..+|++|++.++ .++.|++|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 345689999999999999999999999999999765443 47899999999999999999986 788888877
No 146
>KOG1548|consensus
Probab=98.10 E-value=5.4e-06 Score=76.80 Aligned_cols=81 Identities=22% Similarity=0.369 Sum_probs=70.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccc--------cccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCe
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQYGSITE--------FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGK 169 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~ 169 (348)
.+..|||.|||.++|.+++.++|++||.|.. |++.++. .|..||-|.+.|-..+++.-|++.|+ ..|.|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3567999999999999999999999997753 5565554 48899999999999999999999996 789999
Q ss_pred EEEEEEcccCC
Q psy1757 170 EVDVKRVKFNP 180 (348)
Q Consensus 170 ~i~v~~a~~~~ 180 (348)
.|+|..|+...
T Consensus 212 ~~rVerAkfq~ 222 (382)
T KOG1548|consen 212 KLRVERAKFQM 222 (382)
T ss_pred EEEEehhhhhh
Confidence 99999988653
No 147
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.06 E-value=1.8e-05 Score=61.48 Aligned_cols=79 Identities=14% Similarity=0.284 Sum_probs=65.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhh--cCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCee----CCeEEEE
Q psy1757 101 CKIFVGGLTTEITEQDVRDYFSQ--YGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVI----CGKEVDV 173 (348)
Q Consensus 101 ~~l~V~nLp~~~te~~L~~~F~~--~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i----~G~~i~v 173 (348)
+||.|.|||...|.++|.+++.. .|....+-++.|-.+..+.|||||.|.+++.|.+..+.. +... ..+.++|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999999976 366777888888888899999999999999999988876 3332 3567788
Q ss_pred EEcccC
Q psy1757 174 KRVKFN 179 (348)
Q Consensus 174 ~~a~~~ 179 (348)
.+|+-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 887654
No 148
>KOG4454|consensus
Probab=97.97 E-value=2.3e-06 Score=74.62 Aligned_cols=76 Identities=14% Similarity=0.274 Sum_probs=66.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEE
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKR 175 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~ 175 (348)
..+++|||+|+...++|+.|.++|-+-|.|.+|.|..+++.. .| ||||+|+++.+..-|++.+| ..+.+.++.+.+
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~-~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQE-QK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCC-Cc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 356899999999999999999999999999999998877644 45 99999999999999999985 778888777754
No 149
>KOG0151|consensus
Probab=97.90 E-value=1.4e-05 Score=80.13 Aligned_cols=83 Identities=19% Similarity=0.398 Sum_probs=71.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCC---CCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEE
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDK---SKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDV 173 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~---~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v 173 (348)
+..+.|||+||++.++++.|-..|..||.|..|+|+..+ +..+.+.|+||-|.+..+|++|++.++ ..+...++++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 345789999999999999999999999999999987543 334557799999999999999999994 8899999999
Q ss_pred EEcccCC
Q psy1757 174 KRVKFNP 180 (348)
Q Consensus 174 ~~a~~~~ 180 (348)
.|.+.-+
T Consensus 252 gWgk~V~ 258 (877)
T KOG0151|consen 252 GWGKAVP 258 (877)
T ss_pred ccccccc
Confidence 9986554
No 150
>KOG0151|consensus
Probab=97.85 E-value=4e-05 Score=77.01 Aligned_cols=82 Identities=17% Similarity=0.288 Sum_probs=69.2
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCC---CCCcceEEEEEecCHHHHHHHHHh-CCcccCCeec
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPY---TGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKI 87 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~---tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i 87 (348)
.....+.|||+||++.++++.|...|..||+|..++|+.-+. ..+.+-|+||.|-+..+|++|++. .+..+....+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 345678899999999999999999999999999999987542 235667999999999999999985 4567778888
Q ss_pred Cccccc
Q psy1757 88 DPKRVT 93 (348)
Q Consensus 88 ~v~~a~ 93 (348)
++-|.+
T Consensus 250 K~gWgk 255 (877)
T KOG0151|consen 250 KLGWGK 255 (877)
T ss_pred eecccc
Confidence 888774
No 151
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.72 E-value=2.1e-05 Score=62.26 Aligned_cols=70 Identities=24% Similarity=0.451 Sum_probs=44.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC------CeeCCeEEEEE
Q psy1757 101 CKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK------QVICGKEVDVK 174 (348)
Q Consensus 101 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~------~~i~G~~i~v~ 174 (348)
+.|+|.++...++.++|+++|++|+.|..|.+..... .|+|.|.+.++|++|++.+. ..|.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 4688999999999999999999999999999876532 78999999999999988752 35667666665
Q ss_pred Ec
Q psy1757 175 RV 176 (348)
Q Consensus 175 ~a 176 (348)
..
T Consensus 76 vL 77 (105)
T PF08777_consen 76 VL 77 (105)
T ss_dssp --
T ss_pred EC
Confidence 43
No 152
>KOG0129|consensus
Probab=97.71 E-value=0.0001 Score=71.82 Aligned_cols=68 Identities=28% Similarity=0.421 Sum_probs=62.9
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhh-cCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFS-QYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~-~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~ 77 (348)
....+..+|||||+||.-++.++|..+|+ .||-|.-+-|-.|++-+-.||-+-|+|.+..+-.+||++
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 44567889999999999999999999998 899999999999988889999999999999999999986
No 153
>KOG4210|consensus
Probab=97.63 E-value=5.2e-05 Score=70.65 Aligned_cols=86 Identities=22% Similarity=0.416 Sum_probs=74.2
Q ss_pred CCCCCCCCEEE-EcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecC
Q psy1757 10 GPGRNDERKLF-VGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKID 88 (348)
Q Consensus 10 ~~~~~~~~~lf-VgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~ 88 (348)
........++| |++|+.++++++|.++|..+|.|..+++..++.++.++||++|+|.+...+..++......+.++.+.
T Consensus 178 ~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (285)
T KOG4210|consen 178 RLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLR 257 (285)
T ss_pred ccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccc
Confidence 33445566777 99999999999999999999999999999999999999999999999999999998744678888888
Q ss_pred ccccccc
Q psy1757 89 PKRVTKR 95 (348)
Q Consensus 89 v~~a~~~ 95 (348)
+......
T Consensus 258 ~~~~~~~ 264 (285)
T KOG4210|consen 258 LEEDEPR 264 (285)
T ss_pred cccCCCC
Confidence 8776544
No 154
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.54 E-value=0.00022 Score=49.05 Aligned_cols=53 Identities=19% Similarity=0.475 Sum_probs=42.4
Q ss_pred CCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHH
Q psy1757 16 ERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLL 75 (348)
Q Consensus 16 ~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al 75 (348)
++.|-|.+.+.+.. ++|..+|..||+|.++.+.... -+.+|+|.++.+|++||
T Consensus 1 ~~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 35788889887765 4556689999999998886322 38999999999999985
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.48 E-value=0.00027 Score=55.91 Aligned_cols=55 Identities=27% Similarity=0.425 Sum_probs=36.8
Q ss_pred CEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy1757 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77 (348)
Q Consensus 17 ~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~ 77 (348)
+.|.|.++...++.++|++.|++||.|.-|.+.+.. --|+|.|.+.++|++|++.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~ 56 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEK 56 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHH
Confidence 468899999999999999999999999999887754 2789999999999999985
No 156
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.33 E-value=0.0006 Score=50.94 Aligned_cols=68 Identities=22% Similarity=0.266 Sum_probs=42.4
Q ss_pred CEEEEcCCCCcccHHHHH----HHhhcC-CCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCcc
Q psy1757 17 RKLFVGGLHRNTGEKEIN----DYFSQY-GEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDPK 90 (348)
Q Consensus 17 ~~lfVgnLp~~~te~~L~----~~F~~~-G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v~ 90 (348)
..|+|.|||.+.+...|+ .++.-+ |.|.+|. . +.|+|.|.+++.|++|++. ++..+.|++|.+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~--~--------~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS--G--------GTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----T--------T-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe--C--------CEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 469999999998876655 455555 5677652 1 4799999999999999985 5677888888888
Q ss_pred cccc
Q psy1757 91 RVTK 94 (348)
Q Consensus 91 ~a~~ 94 (348)
....
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 7643
No 157
>KOG1855|consensus
Probab=97.32 E-value=0.00028 Score=67.36 Aligned_cols=70 Identities=17% Similarity=0.241 Sum_probs=58.7
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeC---CCCCC----------cceEEEEEecCHHHHHHHHH
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKND---PYTGQ----------SRGFAFVTYTTQKAVDDLLA 76 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d---~~tg~----------~kG~aFV~F~~~e~A~~Al~ 76 (348)
..++-.+++|.+-|||.+-.-+.|.++|..+|.|..|+|+.- +.+.+ .+=+|+|+|+..+.|.+|.+
T Consensus 225 ~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 225 DEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 344458999999999999999999999999999999999875 32221 24679999999999999999
Q ss_pred hCC
Q psy1757 77 AGD 79 (348)
Q Consensus 77 ~~~ 79 (348)
+++
T Consensus 305 ~~~ 307 (484)
T KOG1855|consen 305 LLN 307 (484)
T ss_pred hhc
Confidence 764
No 158
>KOG4849|consensus
Probab=97.30 E-value=0.0002 Score=66.54 Aligned_cols=72 Identities=18% Similarity=0.272 Sum_probs=61.2
Q ss_pred CCEEEEcCCCCcccHHHHHHHhhcCCC--eeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCC-cccCCeec
Q psy1757 16 ERKLFVGGLHRNTGEKEINDYFSQYGE--VESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGD-HYIGNKKI 87 (348)
Q Consensus 16 ~~~lfVgnLp~~~te~~L~~~F~~~G~--v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~-~~~~gr~i 87 (348)
.-.+|||||-|.+|++||.+.+...|. +.++++..++.+|.+||||+|...+..++++.++.+. ++|+|..-
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P 154 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSP 154 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCC
Confidence 456999999999999999999987764 7788888899999999999999999999999999754 46776543
No 159
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.24 E-value=0.0012 Score=51.55 Aligned_cols=79 Identities=13% Similarity=0.176 Sum_probs=51.4
Q ss_pred CCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEE-EeeCC------CCCCcceEEEEEecCHHHHHHHHHhCCcccCCe
Q psy1757 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESIS-IKNDP------YTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNK 85 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~-i~~d~------~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr 85 (348)
..+++-|.|=+.|.. ....|.+.|++||+|.+.. +.++. ..-.......|+|.++.+|++||..++..+.|.
T Consensus 3 ~~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~ 81 (100)
T PF05172_consen 3 QDSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGS 81 (100)
T ss_dssp -GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTC
T ss_pred CcCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCc
Confidence 345667888899988 5567788899999998764 11100 001223589999999999999999999988886
Q ss_pred ecC-cccc
Q psy1757 86 KID-PKRV 92 (348)
Q Consensus 86 ~i~-v~~a 92 (348)
.+- |.+.
T Consensus 82 ~mvGV~~~ 89 (100)
T PF05172_consen 82 LMVGVKPC 89 (100)
T ss_dssp EEEEEEE-
T ss_pred EEEEEEEc
Confidence 443 4443
No 160
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.23 E-value=0.00077 Score=50.36 Aligned_cols=69 Identities=19% Similarity=0.332 Sum_probs=45.1
Q ss_pred ceEEEcCCCCCCCHHHH----HHHHhhcC-CccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEE
Q psy1757 101 CKIFVGGLTTEITEQDV----RDYFSQYG-SITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVK 174 (348)
Q Consensus 101 ~~l~V~nLp~~~te~~L----~~~F~~~G-~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~ 174 (348)
..|+|.|||.+.+...| ++++..+| .|..|. .+.|+|.|.+.+.|++|++.+ +..+-|.+|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 46899999998887554 56666776 555552 248999999999999999998 477999999998
Q ss_pred EcccC
Q psy1757 175 RVKFN 179 (348)
Q Consensus 175 ~a~~~ 179 (348)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 87443
No 161
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.22 E-value=0.00061 Score=46.90 Aligned_cols=52 Identities=21% Similarity=0.515 Sum_probs=41.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHH
Q psy1757 101 CKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVL 159 (348)
Q Consensus 101 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al 159 (348)
+.|-|.+.+.+..+ ++..+|..||+|.++.+... .-..+|+|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 45778888877665 45558899999999988632 338999999999999985
No 162
>KOG1855|consensus
Probab=96.98 E-value=0.00067 Score=64.82 Aligned_cols=66 Identities=12% Similarity=0.167 Sum_probs=55.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCC---CCCC--c--------cceEEEEEECCHHHHHHHHHcCC
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFD---KSKN--M--------KKGFCFISFDDQNVADQVLKNPK 163 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~---~~~g--~--------~rG~aFV~F~~~e~A~~Al~~~~ 163 (348)
-..++|.+-|||.+-.-+.|.++|..+|.|+.|+|... .++. . .+-+|+|+|++.+.|.+|.+.++
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 36789999999999888999999999999999999765 2221 1 14579999999999999999985
No 163
>KOG2314|consensus
Probab=96.77 E-value=0.0039 Score=61.65 Aligned_cols=72 Identities=18% Similarity=0.349 Sum_probs=56.2
Q ss_pred CCCCCEEEEcCCCCcc--c----HHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCee
Q psy1757 13 RNDERKLFVGGLHRNT--G----EKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKK 86 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~--t----e~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~ 86 (348)
+-....|+|-|+|.-- . ..-|..+|+++|+|..+.+..+... .++||.|++|.+..+|+.|++. ++|+.
T Consensus 55 eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~g-gtkG~lf~E~~~~~~A~~aVK~----l~G~~ 129 (698)
T KOG2314|consen 55 EGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEG-GTKGYLFVEYASMRDAKKAVKS----LNGKR 129 (698)
T ss_pred CCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccC-CeeeEEEEEecChhhHHHHHHh----cccce
Confidence 3556789999998332 2 2345688999999999999988744 4999999999999999999997 55555
Q ss_pred cCc
Q psy1757 87 IDP 89 (348)
Q Consensus 87 i~v 89 (348)
|..
T Consensus 130 ldk 132 (698)
T KOG2314|consen 130 LDK 132 (698)
T ss_pred ecc
Confidence 543
No 164
>KOG3152|consensus
Probab=96.72 E-value=0.0011 Score=59.46 Aligned_cols=72 Identities=17% Similarity=0.356 Sum_probs=56.3
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCC--------CCcce----EEEEEecCHHHHHHHHHh-CCcc
Q psy1757 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYT--------GQSRG----FAFVTYTTQKAVDDLLAA-GDHY 81 (348)
Q Consensus 15 ~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~t--------g~~kG----~aFV~F~~~e~A~~Al~~-~~~~ 81 (348)
....||+++||+.++...|+++|++||.|-.|-+.....+ +.++. -+.|+|.+...|.++.+. ++..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999988766544 22222 267999999999987765 4556
Q ss_pred cCCee
Q psy1757 82 IGNKK 86 (348)
Q Consensus 82 ~~gr~ 86 (348)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 66653
No 165
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.70 E-value=0.0021 Score=59.72 Aligned_cols=107 Identities=16% Similarity=0.388 Sum_probs=71.3
Q ss_pred CCCEEEEcCCCCcccHHH----H--HHHhhcCCCeeEEEEeeCCCC-CCcceE--EEEEecCHHHHHHHHHh-CCcccCC
Q psy1757 15 DERKLFVGGLHRNTGEKE----I--NDYFSQYGEVESISIKNDPYT-GQSRGF--AFVTYTTQKAVDDLLAA-GDHYIGN 84 (348)
Q Consensus 15 ~~~~lfVgnLp~~~te~~----L--~~~F~~~G~v~~i~i~~d~~t-g~~kG~--aFV~F~~~e~A~~Al~~-~~~~~~g 84 (348)
..+-+||-+|++.+-.|+ | .++|.+||.|..|.|-+...+ ....+. .+|+|.+.|+|..||.. .+..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 456689999998886665 2 489999999999887654311 111222 39999999999999986 5678889
Q ss_pred eecCccccccc---------ccCCCceEEEcCCCC---CCCHHHHHHHH
Q psy1757 85 KKIDPKRVTKR---------VNPLKCKIFVGGLTT---EITEQDVRDYF 121 (348)
Q Consensus 85 r~i~v~~a~~~---------~~~~~~~l~V~nLp~---~~te~~L~~~F 121 (348)
|.|+...-..+ .-+.....|+..--+ ..+.++|...-
T Consensus 193 r~lkatYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~q 241 (480)
T COG5175 193 RVLKATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNSQ 241 (480)
T ss_pred ceEeeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhhh
Confidence 98887665433 112234455544332 35667666543
No 166
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.60 E-value=0.011 Score=46.19 Aligned_cols=78 Identities=22% Similarity=0.266 Sum_probs=51.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccccc-cCCCCC------CCccceEEEEEECCHHHHHHHHHcCCCeeCCe-EE
Q psy1757 100 KCKIFVGGLTTEITEQDVRDYFSQYGSITEFQ-QPFDKS------KNMKKGFCFISFDDQNVADQVLKNPKQVICGK-EV 171 (348)
Q Consensus 100 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~-i~~~~~------~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~-~i 171 (348)
++-|.|-+.|+. ....|.+.|++||.|.+.. +.++.. .......-.|+|+++.+|.+||.+++..|.|. -+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 455888889888 4467778899999987764 222100 01124488999999999999999999889875 45
Q ss_pred EEEEccc
Q psy1757 172 DVKRVKF 178 (348)
Q Consensus 172 ~v~~a~~ 178 (348)
-|.+.++
T Consensus 85 GV~~~~~ 91 (100)
T PF05172_consen 85 GVKPCDP 91 (100)
T ss_dssp EEEE-HH
T ss_pred EEEEcHH
Confidence 5777644
No 167
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.59 E-value=0.0032 Score=58.52 Aligned_cols=80 Identities=18% Similarity=0.404 Sum_probs=61.0
Q ss_pred CceEEEcCCCCCCCHHH----H--HHHHhhcCCccccccCCCCCC-CccceEE--EEEECCHHHHHHHHHcCC-CeeCCe
Q psy1757 100 KCKIFVGGLTTEITEQD----V--RDYFSQYGSITEFQQPFDKSK-NMKKGFC--FISFDDQNVADQVLKNPK-QVICGK 169 (348)
Q Consensus 100 ~~~l~V~nLp~~~te~~----L--~~~F~~~G~i~~v~i~~~~~~-g~~rG~a--FV~F~~~e~A~~Al~~~~-~~i~G~ 169 (348)
..-+||-+|++.+..|+ | .++|.+||.|..|.|.+.... +...+.+ +|+|.+.|+|.++|...+ ..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 35689999998876555 3 389999999999988765421 1122333 999999999999999985 789999
Q ss_pred EEEEEEcccC
Q psy1757 170 EVDVKRVKFN 179 (348)
Q Consensus 170 ~i~v~~a~~~ 179 (348)
.|+..+...+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999876543
No 168
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.58 E-value=0.011 Score=44.25 Aligned_cols=57 Identities=18% Similarity=0.335 Sum_probs=41.8
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~ 77 (348)
.+......+|. +|.++...||.++|+.||.|. |..+.|. .|||...+++.|..++..
T Consensus 5 ~P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 5 QPSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp --SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHH
T ss_pred CCCcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHH
Confidence 34445556666 999999999999999999996 5556664 799999999999988875
No 169
>KOG2314|consensus
Probab=96.21 E-value=0.013 Score=58.01 Aligned_cols=76 Identities=18% Similarity=0.324 Sum_probs=58.6
Q ss_pred CCceEEEcCCCCC--CCH----HHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-Cee-CCeE
Q psy1757 99 LKCKIFVGGLTTE--ITE----QDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVI-CGKE 170 (348)
Q Consensus 99 ~~~~l~V~nLp~~--~te----~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i-~G~~ 170 (348)
.+..|+|.|+|-- ... .-|.++|+++|+|..+.++.+.+++ .+|+.|++|++..+|+.|++.++ +.| ..++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3567889998843 222 4556889999999999999887766 89999999999999999999974 443 3455
Q ss_pred EEEEE
Q psy1757 171 VDVKR 175 (348)
Q Consensus 171 i~v~~ 175 (348)
..|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 55543
No 170
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.14 E-value=0.032 Score=39.49 Aligned_cols=55 Identities=20% Similarity=0.348 Sum_probs=45.4
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhcC---CCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy1757 15 DERKLFVGGLHRNTGEKEINDYFSQY---GEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77 (348)
Q Consensus 15 ~~~~lfVgnLp~~~te~~L~~~F~~~---G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~ 77 (348)
...+|+|.++. +++.++|+.+|..| .....|..+.|. .|-|.|.+.+.|.+||.+
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVA 61 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHc
Confidence 34689999994 68999999999988 234578888875 688999999999999975
No 171
>KOG0115|consensus
Probab=96.13 E-value=0.011 Score=53.07 Aligned_cols=61 Identities=16% Similarity=0.298 Sum_probs=53.9
Q ss_pred CEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhC
Q psy1757 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG 78 (348)
Q Consensus 17 ~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~ 78 (348)
..|+|.||..-++.+.|.+.|+.||+|+.-.++.|- .++..+-++|+|...-.+.+|+..+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHh
Confidence 789999999999999999999999999987777663 6777788999999999999888764
No 172
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.12 E-value=0.014 Score=48.50 Aligned_cols=56 Identities=21% Similarity=0.324 Sum_probs=45.8
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCcccccc
Q psy1757 31 KEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVTK 94 (348)
Q Consensus 31 ~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~a~~ 94 (348)
.+|.+.|..||+|.=|++..+ .-+|+|.+-++|.+|+++.+.++.|+.|.++..++
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE---
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCc
Confidence 377888899999888887765 47899999999999999999999999998876543
No 173
>KOG3152|consensus
Probab=96.00 E-value=0.0016 Score=58.39 Aligned_cols=72 Identities=15% Similarity=0.248 Sum_probs=57.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCC--------Cccce----EEEEEECCHHHHHHHHHcCC-Ce
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSK--------NMKKG----FCFISFDDQNVADQVLKNPK-QV 165 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~--------g~~rG----~aFV~F~~~e~A~~Al~~~~-~~ 165 (348)
..-.||+++||+.++...|+++|+.||.|-.|-+.....+ +.++. -+.|+|.+...|+++.+.|| ..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4567999999999999999999999999999888765543 22222 26799999999999998875 66
Q ss_pred eCCeE
Q psy1757 166 ICGKE 170 (348)
Q Consensus 166 i~G~~ 170 (348)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 77765
No 174
>KOG4676|consensus
Probab=95.95 E-value=0.015 Score=55.20 Aligned_cols=77 Identities=16% Similarity=0.251 Sum_probs=63.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCC---CCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEEcc
Q psy1757 101 CKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKS---KNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVK 177 (348)
Q Consensus 101 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~a~ 177 (348)
..|.|.||.++++.++++.+|.-.|+|.++.+..... -....-.|||.|.+...+..|....|.+|-++.|.|...-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 3689999999999999999999999999999876322 1233458999999999999998888888877777775543
No 175
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.73 E-value=0.035 Score=46.15 Aligned_cols=75 Identities=16% Similarity=0.263 Sum_probs=51.9
Q ss_pred cCCCceEEEcCCC-----C-CCCH---HHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeC
Q psy1757 97 NPLKCKIFVGGLT-----T-EITE---QDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVIC 167 (348)
Q Consensus 97 ~~~~~~l~V~nLp-----~-~~te---~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~ 167 (348)
.+.+.+|.|.=+. . .+.+ .+|-+.|..||++.-|+++.+ .-+|+|.+-++|.+|+...+.+++
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~ 95 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVN 95 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEET
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEEC
Confidence 4566677766554 1 2332 356677888999888887654 459999999999999999999999
Q ss_pred CeEEEEEEcccC
Q psy1757 168 GKEVDVKRVKFN 179 (348)
Q Consensus 168 G~~i~v~~a~~~ 179 (348)
|+.|+|+...+.
T Consensus 96 g~~l~i~LKtpd 107 (146)
T PF08952_consen 96 GRTLKIRLKTPD 107 (146)
T ss_dssp TEEEEEEE----
T ss_pred CEEEEEEeCCcc
Confidence 999999876654
No 176
>KOG2202|consensus
Probab=95.56 E-value=0.0079 Score=54.12 Aligned_cols=62 Identities=18% Similarity=0.298 Sum_probs=48.9
Q ss_pred HHHHHHHh-hcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEcc
Q psy1757 115 QDVRDYFS-QYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVK 177 (348)
Q Consensus 115 ~~L~~~F~-~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~ 177 (348)
++|...|+ +||+|+++.|-.+. ...-+|-++|.|..+++|++|++.++ ..+.|++|.+.+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 44445555 79999999775443 34567889999999999999999985 88999999887654
No 177
>KOG2202|consensus
Probab=95.37 E-value=0.0066 Score=54.62 Aligned_cols=61 Identities=13% Similarity=0.386 Sum_probs=46.8
Q ss_pred HHHHHHhh-cCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCcccc
Q psy1757 31 KEINDYFS-QYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDPKRV 92 (348)
Q Consensus 31 ~~L~~~F~-~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v~~a 92 (348)
++|...|+ +||+|++++|..+. .-.-+|-++|.|..+|+|++|++. ++.++.|++|..+.+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 45555555 89999999776543 445678899999999999999985 556888888766654
No 178
>KOG2591|consensus
Probab=95.29 E-value=0.027 Score=55.84 Aligned_cols=71 Identities=14% Similarity=0.295 Sum_probs=57.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhh--cCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC---CeeCCeEEE
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQ--YGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK---QVICGKEVD 172 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~--~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~---~~i~G~~i~ 172 (348)
...|.|.++.|++.+-+|+++.+|+. +-++++|++-.+.. =||+|++..+|+.|.+.+. ++|.||+|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 34578899999999999999999974 77888888765532 3999999999999998873 678898886
Q ss_pred EEE
Q psy1757 173 VKR 175 (348)
Q Consensus 173 v~~ 175 (348)
.++
T Consensus 246 ARI 248 (684)
T KOG2591|consen 246 ARI 248 (684)
T ss_pred hhh
Confidence 544
No 179
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.19 E-value=0.098 Score=37.06 Aligned_cols=55 Identities=24% Similarity=0.421 Sum_probs=42.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcC---CccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC
Q psy1757 100 KCKIFVGGLTTEITEQDVRDYFSQYG---SITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP 162 (348)
Q Consensus 100 ~~~l~V~nLp~~~te~~L~~~F~~~G---~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~ 162 (348)
..+|+|.++. +++.++|+.+|..|- ....|+-+-|. .|-|.|.+.+.|.+||..+
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4579999984 588899999999981 23455555553 6899999999999999764
No 180
>KOG0115|consensus
Probab=95.15 E-value=0.024 Score=51.01 Aligned_cols=94 Identities=12% Similarity=0.233 Sum_probs=71.2
Q ss_pred CCcccCCeecCcccccccccCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHH
Q psy1757 78 GDHYIGNKKIDPKRVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQ 157 (348)
Q Consensus 78 ~~~~~~gr~i~v~~a~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~ 157 (348)
.+....++.+++.++.. ..|+|.||..-++.+.|.+.|+.||.|+...+..|. .++..+-++|+|...-.|.+
T Consensus 15 d~~~~~~~~lr~rfa~~------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~ 87 (275)
T KOG0115|consen 15 DGRFPKGRSLRVRFAMH------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARK 87 (275)
T ss_pred CCCCCCCCceEEEeecc------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHH
Confidence 44567788888887743 569999999999999999999999999876655543 46667788999999888888
Q ss_pred HHHcCC-----CeeCCeEEEEEEccc
Q psy1757 158 VLKNPK-----QVICGKEVDVKRVKF 178 (348)
Q Consensus 158 Al~~~~-----~~i~G~~i~v~~a~~ 178 (348)
|+.... ....++++-|.....
T Consensus 88 a~rr~~~~g~~~~~~~~p~~VeP~eq 113 (275)
T KOG0115|consen 88 AARRCREGGFGGTTGGRPVGVEPMEQ 113 (275)
T ss_pred HHHHhccCccccCCCCCccCCChhhc
Confidence 887762 334555655554443
No 181
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=95.15 E-value=0.021 Score=43.41 Aligned_cols=62 Identities=18% Similarity=0.296 Sum_probs=46.0
Q ss_pred EEEEecCHHHHHHHHHhCCc--ccCCeecCcccccc----------cccCCCceEEEcCCCCCCCHHHHHHHHh
Q psy1757 61 AFVTYTTQKAVDDLLAAGDH--YIGNKKIDPKRVTK----------RVNPLKCKIFVGGLTTEITEQDVRDYFS 122 (348)
Q Consensus 61 aFV~F~~~e~A~~Al~~~~~--~~~gr~i~v~~a~~----------~~~~~~~~l~V~nLp~~~te~~L~~~F~ 122 (348)
|.|+|.+.+-|++.++...+ .+++..+.++..-- ......++|-|.|||...++++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 67999999999999997554 55566555443221 1234568899999999999999998654
No 182
>KOG1996|consensus
Probab=95.00 E-value=0.046 Score=50.17 Aligned_cols=65 Identities=14% Similarity=0.171 Sum_probs=50.3
Q ss_pred HHHHHHHHhhcCCccccccCCCCCCCccc-eEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEccc
Q psy1757 114 EQDVRDYFSQYGSITEFQQPFDKSKNMKK-GFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVKF 178 (348)
Q Consensus 114 e~~L~~~F~~~G~i~~v~i~~~~~~g~~r-G~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~~ 178 (348)
++++++.+++||.|..|.|+.....-..+ ---||+|+..++|.+|+-.+| ..|.|+.++..+-..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 46788899999999998887664332222 236999999999999999886 789999988766443
No 183
>KOG2135|consensus
Probab=94.72 E-value=0.016 Score=56.42 Aligned_cols=80 Identities=21% Similarity=0.250 Sum_probs=65.9
Q ss_pred CCCCCCCCEEEEcCCCCcc-cHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecC
Q psy1757 10 GPGRNDERKLFVGGLHRNT-GEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKID 88 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~-te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~ 88 (348)
..-..+.+.|-+.-+|..+ |.++|...|.+||+|.+|.|-... -.|.|+|.+..+|-.|-......|+++.|+
T Consensus 366 g~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~s~~avlnnr~iK 439 (526)
T KOG2135|consen 366 GHAVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYASHGAVLNNRFIK 439 (526)
T ss_pred cchhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhccccceecCceeE
Confidence 4445667777787788776 568999999999999999886542 268999999999988888888899999999
Q ss_pred ccccccc
Q psy1757 89 PKRVTKR 95 (348)
Q Consensus 89 v~~a~~~ 95 (348)
+.|.+..
T Consensus 440 l~whnps 446 (526)
T KOG2135|consen 440 LFWHNPS 446 (526)
T ss_pred EEEecCC
Confidence 9988654
No 184
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.37 E-value=0.14 Score=42.36 Aligned_cols=73 Identities=12% Similarity=0.144 Sum_probs=55.0
Q ss_pred CCCCCEEEEcCCCCccc-HHHH---HHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecC
Q psy1757 13 RNDERKLFVGGLHRNTG-EKEI---NDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKID 88 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~t-e~~L---~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~ 88 (348)
+..-.||.|.=|..++. .+|| ...++.||+|.+|.+.-.. .|.|.|+|..+|=+|+.+......|..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-------savVvF~d~~SAC~Av~Af~s~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-------SAVVVFKDITSACKAVSAFQSRAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-------eEEEEehhhHHHHHHHHhhcCCCCCceEE
Confidence 34557888988877773 3444 4556789999999876543 79999999999999999876666677766
Q ss_pred cccc
Q psy1757 89 PKRV 92 (348)
Q Consensus 89 v~~a 92 (348)
+.|.
T Consensus 156 CsWq 159 (166)
T PF15023_consen 156 CSWQ 159 (166)
T ss_pred eecc
Confidence 6664
No 185
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.90 E-value=0.69 Score=36.83 Aligned_cols=66 Identities=14% Similarity=0.181 Sum_probs=45.7
Q ss_pred CCEEEEcCCCCcccHHHHHHHhhcCC-CeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeec
Q psy1757 16 ERKLFVGGLHRNTGEKEINDYFSQYG-EVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKI 87 (348)
Q Consensus 16 ~~~lfVgnLp~~~te~~L~~~F~~~G-~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i 87 (348)
...+-+...|.-++.++|..+.+.+- .|..++|++|. ..++--+.++|.+.++|+...+. ++|+..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~----fNGk~F 79 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEE----FNGKPF 79 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHH----hCCCcc
Confidence 33444444444455567766666664 47789999874 34666799999999999999987 666543
No 186
>KOG2416|consensus
Probab=93.76 E-value=0.1 Score=52.19 Aligned_cols=76 Identities=14% Similarity=0.207 Sum_probs=59.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhh-cCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-C---eeCCeEEE
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQ-YGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-Q---VICGKEVD 172 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~---~i~G~~i~ 172 (348)
..+..|+|.||-.-+|.-+|+.++.+ .|.|++..|-+ -|..|||.|.+.++|.+.+..|+ . .-+.+.|.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 34578999999999999999999995 66777764422 24589999999999999988874 2 24678888
Q ss_pred EEEcccC
Q psy1757 173 VKRVKFN 179 (348)
Q Consensus 173 v~~a~~~ 179 (348)
+.++...
T Consensus 516 adf~~~d 522 (718)
T KOG2416|consen 516 ADFVRAD 522 (718)
T ss_pred eeecchh
Confidence 8876643
No 187
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.74 E-value=0.36 Score=39.93 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=56.6
Q ss_pred cCCCceEEEcCCCCCC-CHHHHHH---HHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEE
Q psy1757 97 NPLKCKIFVGGLTTEI-TEQDVRD---YFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVD 172 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~-te~~L~~---~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~ 172 (348)
.+.-.+|.|.=|..++ ..+||+. .++.||.|++|... .+..|.|.|.|..+|-+|+.......-|..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQSRAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcCCCCCceEE
Confidence 4455788887776664 2345554 45679999998764 24479999999999999999988788888999
Q ss_pred EEEcc
Q psy1757 173 VKRVK 177 (348)
Q Consensus 173 v~~a~ 177 (348)
+.|-.
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 98854
No 188
>KOG2193|consensus
Probab=93.72 E-value=0.054 Score=52.07 Aligned_cols=75 Identities=21% Similarity=0.396 Sum_probs=58.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC--CeeCCeEEEEEEccc
Q psy1757 101 CKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK--QVICGKEVDVKRVKF 178 (348)
Q Consensus 101 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~--~~i~G~~i~v~~a~~ 178 (348)
.++|++||.+.++..||+.+|..- ++.....-=...|++||.+.+..-|.+|++.++ .++.|+++++....+
T Consensus 2 nklyignL~p~~~psdl~svfg~a------k~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDA------KIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccc------cCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 468999999999999999999754 111111111124699999999999999999984 779999999988776
Q ss_pred CCC
Q psy1757 179 NPE 181 (348)
Q Consensus 179 ~~~ 181 (348)
+..
T Consensus 76 kkq 78 (584)
T KOG2193|consen 76 KKQ 78 (584)
T ss_pred HHH
Confidence 643
No 189
>KOG1996|consensus
Probab=93.41 E-value=0.21 Score=46.00 Aligned_cols=61 Identities=18% Similarity=0.316 Sum_probs=45.9
Q ss_pred HHHHHHHhhcCCCeeEEEEeeCCCCCCcc-eEEEEEecCHHHHHHHHH-hCCcccCCeecCcc
Q psy1757 30 EKEINDYFSQYGEVESISIKNDPYTGQSR-GFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPK 90 (348)
Q Consensus 30 e~~L~~~F~~~G~v~~i~i~~d~~tg~~k-G~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~ 90 (348)
++++.+-.++||.|.+|.|...+..-... --.||+|+..++|.+|+- +++..|.|+.+...
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~ 362 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSAC 362 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehe
Confidence 45778888999999999888765322221 137999999999999876 56678999876543
No 190
>KOG2135|consensus
Probab=93.28 E-value=0.061 Score=52.45 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=58.1
Q ss_pred eEEEcCCCCC-CCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEEcccC
Q psy1757 102 KIFVGGLTTE-ITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFN 179 (348)
Q Consensus 102 ~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~a~~~ 179 (348)
.|-+.-.+.. -+.++|...|.+||+|+.|.|-... -.|.|+|.+..+|-+|-......|+++.|+|.|.++.
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhccccceecCceeEEEEecCC
Confidence 3444444444 3678999999999999999986542 2689999999999888888788999999999998874
No 191
>KOG2591|consensus
Probab=93.00 E-value=0.25 Score=49.17 Aligned_cols=71 Identities=10% Similarity=0.108 Sum_probs=55.6
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhh--cCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh---CCcccCCe
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFS--QYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA---GDHYIGNK 85 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~--~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~---~~~~~~gr 85 (348)
......|.|.|+-||.++.+|+|+.+|+ .+-++++|.+-.+. -=||+|++..+|++|.+. ..++|.||
T Consensus 170 rp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgK 242 (684)
T KOG2591|consen 170 RPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGK 242 (684)
T ss_pred ccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCc
Confidence 3345567788899999999999999996 47788899886553 358999999999998774 33577788
Q ss_pred ecC
Q psy1757 86 KID 88 (348)
Q Consensus 86 ~i~ 88 (348)
.|.
T Consensus 243 pIm 245 (684)
T KOG2591|consen 243 PIM 245 (684)
T ss_pred chh
Confidence 763
No 192
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.19 E-value=0.2 Score=43.41 Aligned_cols=66 Identities=12% Similarity=0.114 Sum_probs=39.2
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhc-CCCe---eEEEEeeC-CCCC-CcceEEEEEecCHHHHHHHHHh
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQ-YGEV---ESISIKND-PYTG-QSRGFAFVTYTTQKAVDDLLAA 77 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~-~G~v---~~i~i~~d-~~tg-~~kG~aFV~F~~~e~A~~Al~~ 77 (348)
.+.+..+|.|++||+++|++++.+.++. ++.. ..+.-... .... ....-|+|.|.+.+++......
T Consensus 3 ~~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~ 74 (176)
T PF03467_consen 3 KEKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDR 74 (176)
T ss_dssp ------EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHH
T ss_pred CcccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHh
Confidence 3456779999999999999999997776 5555 23331111 1111 1224599999999998888876
No 193
>KOG0112|consensus
Probab=91.67 E-value=0.21 Score=52.42 Aligned_cols=75 Identities=16% Similarity=0.338 Sum_probs=59.0
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCC--eecC
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGN--KKID 88 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~g--r~i~ 88 (348)
.....+.+||++|...+....|...|..||.|..|.+.... -|++|++++...++.|++. .+..|.+ +.+.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq------~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ------PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC------cceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 45567899999999999999999999999999998876543 4999999999999999874 3344442 3444
Q ss_pred cccc
Q psy1757 89 PKRV 92 (348)
Q Consensus 89 v~~a 92 (348)
|..+
T Consensus 525 vdla 528 (975)
T KOG0112|consen 525 VDLA 528 (975)
T ss_pred cccc
Confidence 4443
No 194
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=91.34 E-value=0.42 Score=35.86 Aligned_cols=55 Identities=20% Similarity=0.304 Sum_probs=39.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC
Q psy1757 100 KCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK 163 (348)
Q Consensus 100 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~ 163 (348)
+...+|+ +|......||.++|+.||.|.---| .| ..|||...+.+.|..++..++
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi-~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI-ND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEE-CT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEE-cC-------CcEEEEeecHHHHHHHHHHhc
Confidence 4455665 9999999999999999998754333 22 179999999999988877653
No 195
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=91.24 E-value=4.2 Score=42.46 Aligned_cols=63 Identities=11% Similarity=0.166 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHhhcCCcc-----ccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEEcccCC
Q psy1757 109 TTEITEQDVRDYFSQYGSIT-----EFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKRVKFNP 180 (348)
Q Consensus 109 p~~~te~~L~~~F~~~G~i~-----~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~a~~~~ 180 (348)
...++..+|-.++..-+.|. .|+|..+ |.||+... +.|...+..+ +..+.|++|.|+.++...
T Consensus 496 ~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (629)
T PRK11634 496 DDGVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGDAQ 564 (629)
T ss_pred ccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcCh-hhHHHHHHHhccccccCCceEEEECCCCC
Confidence 35578888888888766554 4455332 78888864 4466777777 578999999999886443
No 196
>KOG0804|consensus
Probab=91.02 E-value=0.71 Score=45.02 Aligned_cols=65 Identities=11% Similarity=0.230 Sum_probs=53.7
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCC-CeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYG-EVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G-~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~ 77 (348)
+....+..|+|-.+|-.+|-.||..|...+- .|.+|+|++|.. .++=...|+|.+.++|....+.
T Consensus 69 ~~~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~e 134 (493)
T KOG0804|consen 69 KNASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEE 134 (493)
T ss_pred ccCCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHH
Confidence 3344489999999999999999999997664 589999999653 3344689999999999999886
No 197
>KOG4285|consensus
Probab=90.85 E-value=0.38 Score=44.54 Aligned_cols=67 Identities=18% Similarity=0.275 Sum_probs=49.0
Q ss_pred EEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeec-Cccc
Q psy1757 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKI-DPKR 91 (348)
Q Consensus 18 ~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i-~v~~ 91 (348)
=|-|=++|+.. -.-|..+|++||+|++.....+ + .+-.|.|.++-+|+|||..++..|++..+ -|+.
T Consensus 199 WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~n---g---NwMhirYssr~~A~KALskng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 199 WVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPSN---G---NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKP 266 (350)
T ss_pred eEEEeccCccc-hhHHHHHHHhhCeeeeeecCCC---C---ceEEEEecchhHHHHhhhhcCeeeccceEEeeee
Confidence 34455776553 3567788999999987654422 2 48999999999999999999988887543 3444
No 198
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=90.69 E-value=0.36 Score=40.22 Aligned_cols=114 Identities=12% Similarity=0.181 Sum_probs=77.0
Q ss_pred CEEEEcCCC--CcccHHHHHHHhhc-CCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCccccc
Q psy1757 17 RKLFVGGLH--RNTGEKEINDYFSQ-YGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVT 93 (348)
Q Consensus 17 ~~lfVgnLp--~~~te~~L~~~F~~-~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~a~ 93 (348)
+...|+.+- .+.+-+.|.+.+.+ ++....+.+..- ..++..++|.++++++++++.....+++..+.++..+
T Consensus 16 ~~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 16 QLCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWS 90 (153)
T ss_pred CeEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEecccccccccchhhhhhc
Confidence 445566553 34556666666643 343333333321 1258899999999999999987777888888877776
Q ss_pred ccccCCC-------ceEEEcCCCCC-CCHHHHHHHHhhcCCccccccCCC
Q psy1757 94 KRVNPLK-------CKIFVGGLTTE-ITEQDVRDYFSQYGSITEFQQPFD 135 (348)
Q Consensus 94 ~~~~~~~-------~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~ 135 (348)
+...... .=|.|.+||.. .+++.|+.+.+.+|++.+++....
T Consensus 91 ~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 91 PDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred ccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 5433322 22566799988 688889999999999988876543
No 199
>KOG2068|consensus
Probab=90.00 E-value=0.19 Score=47.20 Aligned_cols=80 Identities=19% Similarity=0.406 Sum_probs=55.8
Q ss_pred CCCCEEEEcCCCCcccHHHH---HHHhhcCCCeeEEEEeeCCC--CCC-cceEEEEEecCHHHHHHHHHh-CCcccCCee
Q psy1757 14 NDERKLFVGGLHRNTGEKEI---NDYFSQYGEVESISIKNDPY--TGQ-SRGFAFVTYTTQKAVDDLLAA-GDHYIGNKK 86 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L---~~~F~~~G~v~~i~i~~d~~--tg~-~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~ 86 (348)
...+-+||-+|+.+...+++ .+.|.+||.|..|.+.++.. ... .-.-++|+|+..|+|..||.. ++..+.++.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 34567889999988755544 36889999999998887662 111 112389999999999999986 445666666
Q ss_pred cCccccc
Q psy1757 87 IDPKRVT 93 (348)
Q Consensus 87 i~v~~a~ 93 (348)
++.....
T Consensus 155 lka~~gt 161 (327)
T KOG2068|consen 155 LKASLGT 161 (327)
T ss_pred hHHhhCC
Confidence 5544443
No 200
>KOG2416|consensus
Probab=89.55 E-value=0.24 Score=49.70 Aligned_cols=62 Identities=15% Similarity=0.253 Sum_probs=51.3
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhh-cCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFS-QYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~-~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~ 77 (348)
......++.|+|.||-.-.|.-.|++++. ..|.|++.+|-+- |..|||.|.+.++|...+++
T Consensus 438 PsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~A 500 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREA 500 (718)
T ss_pred CCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHH
Confidence 34556789999999999999999999997 6777888855332 34799999999999998886
No 201
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=89.50 E-value=3.8 Score=38.02 Aligned_cols=153 Identities=12% Similarity=0.174 Sum_probs=97.3
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCC-------CCCCcceEEEEEecCHHHHHHHHH------
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDP-------YTGQSRGFAFVTYTTQKAVDDLLA------ 76 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~-------~tg~~kG~aFV~F~~~e~A~~Al~------ 76 (348)
+.++=..|.|...||..+++-.++...|.+||+|++|.++.+. ......-...+.|-+++.+.....
T Consensus 9 GdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrL 88 (309)
T PF10567_consen 9 GDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRL 88 (309)
T ss_pred CCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHH
Confidence 4455668889999999999999999999999999999998765 112233578899999988776543
Q ss_pred -hCCcccCCeecCccccccc---------------------------ccCCCceEEEcCCCCCC-CHHHHHHHH---hhc
Q psy1757 77 -AGDHYIGNKKIDPKRVTKR---------------------------VNPLKCKIFVGGLTTEI-TEQDVRDYF---SQY 124 (348)
Q Consensus 77 -~~~~~~~gr~i~v~~a~~~---------------------------~~~~~~~l~V~nLp~~~-te~~L~~~F---~~~ 124 (348)
...+.++...+.+....-+ .....|.|.|.-- ..+ +++-+.+.+ ..-
T Consensus 89 sEfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~ 167 (309)
T PF10567_consen 89 SEFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNS 167 (309)
T ss_pred HHHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccC
Confidence 1223445555544333210 0112355655433 333 333333322 111
Q ss_pred C----CccccccCCC--CCCCccceEEEEEECCHHHHHHHHHcCC
Q psy1757 125 G----SITEFQQPFD--KSKNMKKGFCFISFDDQNVADQVLKNPK 163 (348)
Q Consensus 125 G----~i~~v~i~~~--~~~g~~rG~aFV~F~~~e~A~~Al~~~~ 163 (348)
+ -|+.|.++.. ....-++.||.++|-+..-|.+.++.+.
T Consensus 168 ~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 168 NNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred CCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 2 3566776643 2344567899999999999988888763
No 202
>KOG2068|consensus
Probab=87.99 E-value=0.11 Score=48.70 Aligned_cols=79 Identities=20% Similarity=0.397 Sum_probs=55.5
Q ss_pred ceEEEcCCCCCCCHH-HHH--HHHhhcCCccccccCCCCC--CCc-cceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEE
Q psy1757 101 CKIFVGGLTTEITEQ-DVR--DYFSQYGSITEFQQPFDKS--KNM-KKGFCFISFDDQNVADQVLKNPK-QVICGKEVDV 173 (348)
Q Consensus 101 ~~l~V~nLp~~~te~-~L~--~~F~~~G~i~~v~i~~~~~--~g~-~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v 173 (348)
..+||-+|+..+..+ .|+ +.|.+||.|..|.+..+.. ... .-.-++|+|.+.++|..||...+ ..++|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 557888898776444 444 6788889999998877652 111 11237999999999999998874 6677777666
Q ss_pred EEcccC
Q psy1757 174 KRVKFN 179 (348)
Q Consensus 174 ~~a~~~ 179 (348)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 555443
No 203
>KOG2891|consensus
Probab=85.18 E-value=2.7 Score=38.60 Aligned_cols=36 Identities=22% Similarity=0.452 Sum_probs=28.7
Q ss_pred CceEEEcCCCCC------------CCHHHHHHHHhhcCCccccccCCC
Q psy1757 100 KCKIFVGGLTTE------------ITEQDVRDYFSQYGSITEFQQPFD 135 (348)
Q Consensus 100 ~~~l~V~nLp~~------------~te~~L~~~F~~~G~i~~v~i~~~ 135 (348)
..+|++.+||-. .+++.|+..|+.||.|..|.|+..
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipic 196 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPIC 196 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCccc
Confidence 467888888721 478899999999999999988643
No 204
>KOG4285|consensus
Probab=84.31 E-value=1.9 Score=40.02 Aligned_cols=73 Identities=19% Similarity=0.283 Sum_probs=52.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeE-EEEEEcccCCC
Q psy1757 103 IFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKE-VDVKRVKFNPE 181 (348)
Q Consensus 103 l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~-i~v~~a~~~~~ 181 (348)
|-|-++++.- -..|..+|++||.|.+.....+ -.+-+|.|.+.-+|.+||.+.+..|+|.. |-|+...++..
T Consensus 200 VTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDksv 272 (350)
T KOG4285|consen 200 VTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDKSV 272 (350)
T ss_pred EEEeccCccc-hhHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCHHH
Confidence 4444555543 3567789999999987765422 23889999999999999999888887754 56666565544
Q ss_pred C
Q psy1757 182 T 182 (348)
Q Consensus 182 ~ 182 (348)
.
T Consensus 273 i 273 (350)
T KOG4285|consen 273 I 273 (350)
T ss_pred h
Confidence 3
No 205
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=83.68 E-value=0.75 Score=39.83 Aligned_cols=65 Identities=15% Similarity=0.112 Sum_probs=38.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhh-cCCc---cccc--cCCCCCCCccceEEEEEECCHHHHHHHHHcCC
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQ-YGSI---TEFQ--QPFDKSKNMKKGFCFISFDDQNVADQVLKNPK 163 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~i---~~v~--i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~ 163 (348)
...+|.|++||+.+||+++.+.++. ++.. ..+. +.........-.-|+|.|.+.+++...+...+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~ 76 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFD 76 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCT
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcC
Confidence 3468999999999999999886665 4443 1222 11111111123458999999999998888864
No 206
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=82.55 E-value=3 Score=36.36 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=42.5
Q ss_pred CHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC---CeeCCeEEEEEEcccC
Q psy1757 113 TEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK---QVICGKEVDVKRVKFN 179 (348)
Q Consensus 113 te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~---~~i~G~~i~v~~a~~~ 179 (348)
..+.|+++|..++.+..+.+++. -+-..|.|.+.++|.+|...++ ..+.|..++|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999998877766543 1257899999999999999876 6799999999988543
No 207
>KOG2253|consensus
Probab=81.92 E-value=0.99 Score=46.05 Aligned_cols=70 Identities=14% Similarity=0.125 Sum_probs=55.5
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCC-cccCCeecCcc
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGD-HYIGNKKIDPK 90 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~-~~~~gr~i~v~ 90 (348)
......+|||+||...+..+-++.+...+|-|.+|.... |+|..|........|+..+. ..+++..+.+.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 345678999999999999999999999999998876543 89999999998888877543 35555555443
No 208
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=81.80 E-value=5.8 Score=31.56 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=44.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcC-CccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC
Q psy1757 101 CKIFVGGLTTEITEQDVRDYFSQYG-SITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK 163 (348)
Q Consensus 101 ~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~ 163 (348)
..+.+...|..++-++|..+.+.+- .|+.++|+++.. .++-.+.|+|.+.++|.+..+..|
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fN 75 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFN 75 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhC
Confidence 3445555566677777876666654 577889988753 356678999999999999988864
No 209
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=80.31 E-value=8.9 Score=27.91 Aligned_cols=66 Identities=23% Similarity=0.429 Sum_probs=35.7
Q ss_pred EEEEc-CCCCcccHHHHHHHhhcCC-----CeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCcc
Q psy1757 18 KLFVG-GLHRNTGEKEINDYFSQYG-----EVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDPK 90 (348)
Q Consensus 18 ~lfVg-nLp~~~te~~L~~~F~~~G-----~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v~ 90 (348)
+|||. +--..++..+|..++..-+ .|-+|+|..+ |+||+-... .++.+++. ++..+.|+++.++
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEE
Confidence 45553 2224578899999997664 3567887654 889987665 46666664 5678999998876
Q ss_pred cc
Q psy1757 91 RV 92 (348)
Q Consensus 91 ~a 92 (348)
.+
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 53
No 210
>KOG2253|consensus
Probab=79.31 E-value=1.3 Score=45.30 Aligned_cols=70 Identities=13% Similarity=0.169 Sum_probs=59.6
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~ 175 (348)
.+...++||+|+...+..+-++.+...+|.|..+.... |+|.+|..+....+|+..+. ..+++..+.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 34568899999999999999999999999998887654 89999999999999998875 667787776654
No 211
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=79.20 E-value=8.7 Score=27.56 Aligned_cols=45 Identities=20% Similarity=0.444 Sum_probs=34.1
Q ss_pred CcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCC
Q psy1757 26 RNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGD 79 (348)
Q Consensus 26 ~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~ 79 (348)
..++-++|+..+..|.-. +|+.|+ | || ||.|.+.++|+++....+
T Consensus 10 ~~~~v~d~K~~Lr~y~~~---~I~~d~-t----Gf-YIvF~~~~Ea~rC~~~~~ 54 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWD---RIRDDR-T----GF-YIVFNDSKEAERCFRAED 54 (66)
T ss_pred CCccHHHHHHHHhcCCcc---eEEecC-C----EE-EEEECChHHHHHHHHhcC
Confidence 357889999999999543 244454 3 45 899999999999998743
No 212
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=78.24 E-value=7.8 Score=28.23 Aligned_cols=58 Identities=26% Similarity=0.393 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHhhcCCcc-----ccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEEc
Q psy1757 110 TEITEQDVRDYFSQYGSIT-----EFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKRV 176 (348)
Q Consensus 110 ~~~te~~L~~~F~~~G~i~-----~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~a 176 (348)
..++..+|..++..-..|. .|+|..+ |+||+-... .|+++++.+ +..+.|+++.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4588899999998876554 4555433 889988754 666777776 47899999999864
No 213
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=78.14 E-value=4.7 Score=35.15 Aligned_cols=58 Identities=12% Similarity=0.058 Sum_probs=41.5
Q ss_pred cHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCC---cccCCeecCcccc
Q psy1757 29 GEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGD---HYIGNKKIDPKRV 92 (348)
Q Consensus 29 te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~---~~~~gr~i~v~~a 92 (348)
..+.|+++|..++.+.++.+++.- +-..|.|.+.++|.+|..... ..+.++.+++-.+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 468899999999999988887642 367899999999999988644 5788888777655
No 214
>KOG2318|consensus
Probab=74.16 E-value=12 Score=37.95 Aligned_cols=129 Identities=13% Similarity=0.197 Sum_probs=71.6
Q ss_pred CCCCCEEEEcCCCCc-ccHHHHHHHhhcC----CCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeec
Q psy1757 13 RNDERKLFVGGLHRN-TGEKEINDYFSQY----GEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKI 87 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~-~te~~L~~~F~~~----G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i 87 (348)
...+++|-|-|+.|+ +.-++|.-+|+.| |.|.+|.|.... |+--.+... .+.|..+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe-------FGkeRM~eE------------eV~GP~~ 231 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE-------FGKERMKEE------------EVHGPPK 231 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh-------hhHHHhhhh------------cccCChh
Confidence 467899999999988 5788999999877 689999887643 221111111 1344333
Q ss_pred CcccccccccCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-Cee
Q psy1757 88 DPKRVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVI 166 (348)
Q Consensus 88 ~v~~a~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i 166 (348)
.+........... ..+..-++-.+..+..|+ +..++ -=||.|+|.+.+.|...-+.++ .++
T Consensus 232 el~~~~e~~~~s~-------sD~ee~~~~~~~kLR~Yq-~~rLk----------YYyAVvecDsi~tA~~vYe~CDG~Ef 293 (650)
T KOG2318|consen 232 ELFKPVEEYKESE-------SDDEEEEDVDREKLRQYQ-LNRLK----------YYYAVVECDSIETAKAVYEECDGIEF 293 (650)
T ss_pred hhccccccCcccc-------cchhhhhhHHHHHHHHHH-hhhhe----------eEEEEEEecCchHHHHHHHhcCccee
Confidence 2222111110000 111111122233333442 11111 1279999999999999999984 555
Q ss_pred C--CeEEEEEEccc
Q psy1757 167 C--GKEVDVKRVKF 178 (348)
Q Consensus 167 ~--G~~i~v~~a~~ 178 (348)
. +..+.+++.-.
T Consensus 294 EsS~~~~DLRFIPD 307 (650)
T KOG2318|consen 294 ESSANKLDLRFIPD 307 (650)
T ss_pred ccccceeeeeecCC
Confidence 4 45566665543
No 215
>KOG3973|consensus
Probab=73.72 E-value=5.3 Score=37.89 Aligned_cols=20 Identities=15% Similarity=0.021 Sum_probs=9.9
Q ss_pred EEEEcCCCCcccHHHHHHHh
Q psy1757 18 KLFVGGLHRNTGEKEINDYF 37 (348)
Q Consensus 18 ~lfVgnLp~~~te~~L~~~F 37 (348)
+|=+...|.++++-.|.+-+
T Consensus 151 ~L~~~k~p~Nin~~~lfe~i 170 (465)
T KOG3973|consen 151 TLNFPKQPGNINEWKLFETI 170 (465)
T ss_pred HcCCCCCCCCchHHHHHHHH
Confidence 34344445556655554444
No 216
>KOG4213|consensus
Probab=73.65 E-value=3 Score=35.85 Aligned_cols=63 Identities=14% Similarity=0.195 Sum_probs=43.2
Q ss_pred CCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCC--CcceEEEEEecCHHHHHHHHHhCCcccC
Q psy1757 16 ERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTG--QSRGFAFVTYTTQKAVDDLLAAGDHYIG 83 (348)
Q Consensus 16 ~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg--~~kG~aFV~F~~~e~A~~Al~~~~~~~~ 83 (348)
.+++|.. +-+..-++|..+-+ |.+..|.+.+.. .+ ..+|-.||+|.+.+.|.++++.......
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~ 175 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDTHEEKGA 175 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhhhhhhcc
Confidence 4677776 33334445555444 788888876543 34 6789999999999999998886544333
No 217
>KOG4574|consensus
Probab=73.29 E-value=1.8 Score=45.54 Aligned_cols=54 Identities=22% Similarity=0.215 Sum_probs=46.0
Q ss_pred EEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy1757 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77 (348)
Q Consensus 18 ~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~ 77 (348)
+..+-|.+-+.+...|..+|++||.|.+++.+++- ..|.|+|.+.+.|..|+++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dA 353 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDA 353 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhh
Confidence 34455566777889999999999999999998875 3799999999999999987
No 218
>KOG4574|consensus
Probab=73.22 E-value=2.9 Score=44.01 Aligned_cols=75 Identities=20% Similarity=0.183 Sum_probs=60.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-C--CeeCCeEEEEEEcc
Q psy1757 101 CKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-K--QVICGKEVDVKRVK 177 (348)
Q Consensus 101 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~--~~i~G~~i~v~~a~ 177 (348)
.+..+.|.+-..+-..|.-+|.+||.|.+++..++-+ .|.|+|.+.+.|..|++.+ + ..+.|-+.+|.+++
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 3345555666778889999999999999999877743 7999999999999999987 3 34678889999988
Q ss_pred cCCC
Q psy1757 178 FNPE 181 (348)
Q Consensus 178 ~~~~ 181 (348)
.-+-
T Consensus 373 ~~~~ 376 (1007)
T KOG4574|consen 373 TLPM 376 (1007)
T ss_pred cccc
Confidence 7654
No 219
>KOG0804|consensus
Probab=73.12 E-value=8.5 Score=37.81 Aligned_cols=66 Identities=15% Similarity=0.229 Sum_probs=54.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcC-CccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeC
Q psy1757 100 KCKIFVGGLTTEITEQDVRDYFSQYG-SITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVIC 167 (348)
Q Consensus 100 ~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~ 167 (348)
+..|+|-.+|..++-.||-.|...+- .|..++|++|..- .+-...|+|.+.++|....+..| ..|+
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 67899999999999999999998875 5889999996543 35568999999999999998864 4443
No 220
>KOG4410|consensus
Probab=72.99 E-value=16 Score=33.91 Aligned_cols=59 Identities=15% Similarity=0.267 Sum_probs=41.5
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCH-------HHHHHHHHh
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ-------KAVDDLLAA 77 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~-------e~A~~Al~~ 77 (348)
-....|+++|||.++.-.||+..+.+-+.+- ..|... -++|-||+.|-+. +++++++..
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswk----g~~~k~flh~~~~~~~~~~~~~~~~~~~s 393 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWK----GHFGKCFLHFGNRKGVPSTQDDMDKVLKS 393 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCc-eeEeee----cCCcceeEecCCccCCCCCchHHHHHhcc
Confidence 3456699999999999999999998876642 223222 2456899999765 455555543
No 221
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=72.07 E-value=14 Score=26.42 Aligned_cols=52 Identities=19% Similarity=0.399 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEE
Q psy1757 111 EITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEV 171 (348)
Q Consensus 111 ~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i 171 (348)
.++-++++..+.+|.-. +|..|+ .|| ||.|.+.++|+++....+ ..+....+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m 63 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRM 63 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEE
Confidence 46789999999988632 232332 234 999999999999998864 44544444
No 222
>KOG4483|consensus
Probab=71.10 E-value=11 Score=36.54 Aligned_cols=68 Identities=10% Similarity=0.174 Sum_probs=52.1
Q ss_pred CCCCCEEEEcCCCCcccHHHHHHHhhcCCC-eeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeec
Q psy1757 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGE-VESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKI 87 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~-v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i 87 (348)
.+-...|=|-++|.....+||...|+.|+. =-+|.++-|. .+|-.|.+...|..||.....++.-|.|
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh~~lKiRpL 456 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKHDWLKIRPL 456 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccCceEEeeeh
Confidence 334578899999999999999999999965 3356666664 7999999999999999873334444443
No 223
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=64.33 E-value=31 Score=27.55 Aligned_cols=105 Identities=22% Similarity=0.336 Sum_probs=59.7
Q ss_pred CCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCC--cccCCeecCcccccccccCCCc
Q psy1757 24 LHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGD--HYIGNKKIDPKRVTKRVNPLKC 101 (348)
Q Consensus 24 Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~--~~~~gr~i~v~~a~~~~~~~~~ 101 (348)
||+-++ +|.++|+.=|+|.+|..+.. +.|-+ | .+..++ ..++|+ |.+.... ...
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svItvtq-------------ypdnd-a--l~~~~G~lE~vDg~-i~IGs~q-----~~~ 66 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVITVTQ-------------YPDND-A--LLYVHGTLEQVDGN-IRIGSGQ-----TPA 66 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEEEec-------------cCCch-h--hheeeeehhhccCc-EEEccCC-----Ccc
Confidence 566554 68899999999988754332 22211 1 111111 123333 3222211 122
Q ss_pred eEEEcC---------CCCCCCHHHHHHHHhh---cCCccccccCCCCCCCccceEEEEEECCH
Q psy1757 102 KIFVGG---------LTTEITEQDVRDYFSQ---YGSITEFQQPFDKSKNMKKGFCFISFDDQ 152 (348)
Q Consensus 102 ~l~V~n---------Lp~~~te~~L~~~F~~---~G~i~~v~i~~~~~~g~~rG~aFV~F~~~ 152 (348)
.++|.+ -|..+|-.+|+++|++ |-.|..-.+.+|.--..+-..||..|...
T Consensus 67 sV~i~gTPsgnnv~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 67 SVRIQGTPSGNNVIFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred cEEEecCCCCCceecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 233333 3557899999999985 67777777777654444445788888654
No 224
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=61.18 E-value=3.6 Score=39.73 Aligned_cols=64 Identities=14% Similarity=0.244 Sum_probs=54.7
Q ss_pred CCCCCEEEEcCCCCcccHH--------HHHHHhhc--CCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH
Q psy1757 13 RNDERKLFVGGLHRNTGEK--------EINDYFSQ--YGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~--------~L~~~F~~--~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~ 76 (348)
....+.+|+.++..+.+.+ ++...|.. ++++..|.+.++.....++|..|++|...+.+++.+.
T Consensus 171 ~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 171 SQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4456788999888776655 99999998 6788889998887788899999999999999999986
No 225
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=58.65 E-value=12 Score=34.77 Aligned_cols=80 Identities=11% Similarity=0.176 Sum_probs=60.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCC-------CCCccceEEEEEECCHHHHHHH-------HHcCCC
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDK-------SKNMKKGFCFISFDDQNVADQV-------LKNPKQ 164 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-------~~g~~rG~aFV~F~~~e~A~~A-------l~~~~~ 164 (348)
+.|.|...|+..+++-..+-..|.+||.|+.|.++.+. +.........+.|-+.+.+... +.+.+.
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999999999999998765 1222345778999998877432 223346
Q ss_pred eeCCeEEEEEEccc
Q psy1757 165 VICGKEVDVKRVKF 178 (348)
Q Consensus 165 ~i~G~~i~v~~a~~ 178 (348)
.+.-..+.+.++..
T Consensus 94 ~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 94 KLKSESLTLSFVSL 107 (309)
T ss_pred hcCCcceeEEEEEE
Confidence 68888888887764
No 226
>KOG4019|consensus
Probab=56.53 E-value=17 Score=31.45 Aligned_cols=75 Identities=16% Similarity=0.122 Sum_probs=50.8
Q ss_pred CceEEEcCCCCCCC-H----HHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCe-EEE
Q psy1757 100 KCKIFVGGLTTEIT-E----QDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGK-EVD 172 (348)
Q Consensus 100 ~~~l~V~nLp~~~t-e----~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~-~i~ 172 (348)
..++.+.++...+. + ...+.+|.++.+....++++ +.+...|.|.+.+.|..|..++. ..|.++ .+.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 34567777776642 2 33445555565555555544 24467789999999999998884 778888 788
Q ss_pred EEEcccCC
Q psy1757 173 VKRVKFNP 180 (348)
Q Consensus 173 v~~a~~~~ 180 (348)
+-++.+..
T Consensus 84 ~yfaQ~~~ 91 (193)
T KOG4019|consen 84 LYFAQPGH 91 (193)
T ss_pred EEEccCCC
Confidence 88777643
No 227
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=53.93 E-value=7.2 Score=41.19 Aligned_cols=30 Identities=17% Similarity=0.462 Sum_probs=25.2
Q ss_pred CCCCCCEEEEcCCCCcc-cHHHHHHHhhcCC
Q psy1757 12 GRNDERKLFVGGLHRNT-GEKEINDYFSQYG 41 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~-te~~L~~~F~~~G 41 (348)
....+|||+|..||.++ ++++|.++|.+.+
T Consensus 204 ~~~ssRTvlis~LP~~~~~~e~L~~~~~kl~ 234 (827)
T COG5594 204 NNLSSRTVLISGLPSELRSDEELKELFDKLK 234 (827)
T ss_pred cCCCCceEEeecCChhhcCchhHHHHHhhcC
Confidence 45578999999999886 7778999998764
No 228
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=52.11 E-value=24 Score=28.26 Aligned_cols=37 Identities=16% Similarity=0.383 Sum_probs=23.4
Q ss_pred cHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCH
Q psy1757 29 GEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68 (348)
Q Consensus 29 te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~ 68 (348)
+.++|++.|+.|.+++ ++.+.++ .-+.|++.|+|.+.
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKD 66 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SS
T ss_pred CHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCC
Confidence 5589999999998875 5555553 25779999999764
No 229
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=51.26 E-value=20 Score=25.78 Aligned_cols=62 Identities=13% Similarity=0.389 Sum_probs=41.8
Q ss_pred HHHHHHHhhcC-CccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEcccC
Q psy1757 115 QDVRDYFSQYG-SITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVKFN 179 (348)
Q Consensus 115 ~~L~~~F~~~G-~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~~~ 179 (348)
++|++.|...| .|.+|.-+..+.+...--.-||+++...+..+ .++ ..+.+..|+|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 46778888777 57777766666555566677888876555222 233 5688888998876654
No 230
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=49.01 E-value=47 Score=25.04 Aligned_cols=56 Identities=13% Similarity=0.234 Sum_probs=40.4
Q ss_pred EEEcCCCCcccHHHHHHHhhc-CC-CeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy1757 19 LFVGGLHRNTGEKEINDYFSQ-YG-EVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77 (348)
Q Consensus 19 lfVgnLp~~~te~~L~~~F~~-~G-~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~ 77 (348)
-|+=-++.+++..+|++.++. |+ .|.+|+.+..+ . ..--|+|++...++|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~--~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-K--GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CcEEEEEEeCCCCcHHHHHHh
Confidence 334457789999999999986 55 48888877654 2 223599999988887776543
No 231
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=48.61 E-value=49 Score=28.92 Aligned_cols=74 Identities=14% Similarity=0.257 Sum_probs=55.9
Q ss_pred CeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCcccccccccCCCceEEEcCCCCCC--------C
Q psy1757 42 EVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVTKRVNPLKCKIFVGGLTTEI--------T 113 (348)
Q Consensus 42 ~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~a~~~~~~~~~~l~V~nLp~~~--------t 113 (348)
.+.-|..++++ +.|.+.|+|.+.|+..++.++-..|.+....+..+....+|||.-+.-.+ -
T Consensus 36 ~l~PVlF~rdK----------~I~qs~e~ai~~lE~e~KlWreteI~I~~g~p~VNE~TkkIYICPFTGKVF~DNt~~nP 105 (238)
T PF10915_consen 36 NLQPVLFVRDK----------IIFQSAEDAIRILEEEGKLWRETEIKIQSGKPSVNEQTKKIYICPFTGKVFGDNTHPNP 105 (238)
T ss_pred CCCceeeecch----------hhccCHHHHHHHHHHhcchheeeeEEEecCCcccccccceEEEcCCcCccccCCCCCCh
Confidence 34556677776 78999999999999988888888888888877777777888886554322 3
Q ss_pred HHHHHHHHhhcC
Q psy1757 114 EQDVRDYFSQYG 125 (348)
Q Consensus 114 e~~L~~~F~~~G 125 (348)
.+.|.+..+++-
T Consensus 106 QDAIYDWvSkCP 117 (238)
T PF10915_consen 106 QDAIYDWVSKCP 117 (238)
T ss_pred HHHHHHHHhhCC
Confidence 467778887764
No 232
>KOG3875|consensus
Probab=47.45 E-value=99 Score=29.23 Aligned_cols=8 Identities=25% Similarity=0.596 Sum_probs=3.9
Q ss_pred CCCCCCCC
Q psy1757 234 DAYATAYP 241 (348)
Q Consensus 234 ~~y~~gyg 241 (348)
++|+++|+
T Consensus 79 g~YGgGyg 86 (362)
T KOG3875|consen 79 GPYGGGYG 86 (362)
T ss_pred CCcCCCcC
Confidence 44554544
No 233
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=44.53 E-value=40 Score=25.67 Aligned_cols=30 Identities=33% Similarity=0.500 Sum_probs=24.2
Q ss_pred EEEEECCHHHHHHHHHcCC--CeeCCeEEEEE
Q psy1757 145 CFISFDDQNVADQVLKNPK--QVICGKEVDVK 174 (348)
Q Consensus 145 aFV~F~~~e~A~~Al~~~~--~~i~G~~i~v~ 174 (348)
|.|+|.+.+.|++.++... ..+++..+.|.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~ 32 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVK 32 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEE
Confidence 6899999999999999875 45677776664
No 234
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=43.82 E-value=22 Score=25.68 Aligned_cols=62 Identities=8% Similarity=0.184 Sum_probs=42.3
Q ss_pred HHHHHHHhhcC-CccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEcccC
Q psy1757 115 QDVRDYFSQYG-SITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVKFN 179 (348)
Q Consensus 115 ~~L~~~F~~~G-~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~~~ 179 (348)
++|++.|.+.| .+.++.-+..+.+..+-..-||+.....+-.. .++ ..|++.++.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 46788888887 57788777777666566677888865533333 233 5688889998765543
No 235
>KOG2891|consensus
Probab=42.41 E-value=35 Score=31.51 Aligned_cols=38 Identities=16% Similarity=0.423 Sum_probs=30.3
Q ss_pred CCCCCEEEEcCCCCc------------ccHHHHHHHhhcCCCeeEEEEee
Q psy1757 13 RNDERKLFVGGLHRN------------TGEKEINDYFSQYGEVESISIKN 50 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~------------~te~~L~~~F~~~G~v~~i~i~~ 50 (348)
-+...||++.+||.. -+++-|+..|+.||.|..|.|..
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 345678999999843 25778999999999999988854
No 236
>KOG4410|consensus
Probab=41.12 E-value=52 Score=30.61 Aligned_cols=47 Identities=19% Similarity=0.377 Sum_probs=33.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCH
Q psy1757 101 CKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQ 152 (348)
Q Consensus 101 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~ 152 (348)
.-|+|+||+.++.-.||+..+.+-+-+ -..|. ..| .+|-||+.|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~is---wkg-~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECT-PMSIS---WKG-HFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCC-ceeEe---eec-CCcceeEecCCc
Confidence 459999999999999999998876532 11221 112 466899999764
No 237
>KOG4483|consensus
Probab=39.54 E-value=78 Score=30.88 Aligned_cols=62 Identities=16% Similarity=0.181 Sum_probs=46.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCc-cccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeC
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQYGSI-TEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVIC 167 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i-~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~ 167 (348)
....|-|-++|.....+||...|+.|+.- -+|+.+.|. .+|-.|.+...|..||-.....+.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh~~lK 452 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKHDWLK 452 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccCceEE
Confidence 44778899999999899999999999752 233333332 799999999999999977444333
No 238
>KOG4008|consensus
Probab=37.89 E-value=26 Score=31.60 Aligned_cols=36 Identities=22% Similarity=0.415 Sum_probs=31.5
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEE
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESI 46 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i 46 (348)
....+.++||+-|||..+|++.|.++.+++|.+..+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 556788999999999999999999999999866544
No 239
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=37.83 E-value=25 Score=28.23 Aligned_cols=46 Identities=11% Similarity=0.418 Sum_probs=26.0
Q ss_pred CCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECC-HHHHHHHHH
Q psy1757 112 ITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDD-QNVADQVLK 160 (348)
Q Consensus 112 ~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~-~e~A~~Al~ 160 (348)
++.+.|++.|+.|..++ ++.+.+.. ...|++.|+|.+ ..--..|+.
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 35589999999998765 55545443 468899999975 444444443
No 240
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=37.18 E-value=79 Score=22.36 Aligned_cols=19 Identities=37% Similarity=0.730 Sum_probs=15.5
Q ss_pred HHHHHHHhhcCCCeeEEEE
Q psy1757 30 EKEINDYFSQYGEVESISI 48 (348)
Q Consensus 30 e~~L~~~F~~~G~v~~i~i 48 (348)
.++|+++|+..|+|.-+-|
T Consensus 8 ~~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHHhcCcEEEEEE
Confidence 3689999999999876554
No 241
>PF14893 PNMA: PNMA
Probab=36.55 E-value=24 Score=33.68 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=23.0
Q ss_pred CCCCCEEEEcCCCCcccHHHHHHHhhc
Q psy1757 13 RNDERKLFVGGLHRNTGEKEINDYFSQ 39 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~~L~~~F~~ 39 (348)
-+..+.|.|.+||.++++++|.+.+..
T Consensus 15 ~~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 15 VDPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred cChhhhheeecCCCCCCHHHHHHHHHH
Confidence 356788999999999999999988753
No 242
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=36.45 E-value=44 Score=24.01 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=41.1
Q ss_pred HHHHHHhhcCCC-eeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCcccccc
Q psy1757 31 KEINDYFSQYGE-VESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVTK 94 (348)
Q Consensus 31 ~~L~~~F~~~G~-v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~a~~ 94 (348)
++|.+.|...|- |.+|.-+..+.++...-.-||+.+...+...+++. ..+.+..+.+++...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~I--k~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYKI--KTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceeeh--HhhCCeEEEEecCCC
Confidence 577888887774 77887777776777777888888766553333321 235666677776544
No 243
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=35.67 E-value=50 Score=31.03 Aligned_cols=57 Identities=19% Similarity=0.140 Sum_probs=34.4
Q ss_pred EEEEecCHHHHHHHHHhCCcccCCeecCcccccccccCCCceEEEcCCCCCCCHHHHHHHHhh
Q psy1757 61 AFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQ 123 (348)
Q Consensus 61 aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~a~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~ 123 (348)
|||+|++.++|..|++..... +.+.+.++.+ +..+-|.=.||..+..+..+|..+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~-~~~~~~v~~A-----PeP~DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK-RPNSWRVSPA-----PEPDDIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC-CCCCceEeeC-----CCcccccccccCCChHHHHHHHHHHH
Confidence 799999999999999852221 1233344333 22233555677666666666665554
No 244
>KOG2854|consensus
Probab=34.60 E-value=1.3e+02 Score=28.71 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=30.5
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCC
Q psy1757 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQ 56 (348)
Q Consensus 15 ~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~ 56 (348)
..+++|+|-+-.|---+.|++..+.-|--..-.+.++-.||.
T Consensus 80 p~~~~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d~~TGt 121 (343)
T KOG2854|consen 80 PGATVFFGSVGKDKFGELLKSKARAAGVNVHYQVKEDGPTGT 121 (343)
T ss_pred CCceEEEeeccCchHHHHHHHHHHhcCceEEEEeccCCCCce
Confidence 348999999988877788888777777655555556555553
No 245
>PTZ00110 helicase; Provisional
Probab=29.96 E-value=1.5e+02 Score=30.45 Aligned_cols=12 Identities=25% Similarity=0.720 Sum_probs=5.1
Q ss_pred CCCCCCCCCCCC
Q psy1757 234 DAYATAYPGYDY 245 (348)
Q Consensus 234 ~~y~~gygg~~y 245 (348)
++|+++|++.++
T Consensus 53 ~~~~~~~~~~~~ 64 (545)
T PTZ00110 53 GNYSGGYGGFGM 64 (545)
T ss_pred CCCCCcCCCCCC
Confidence 334444444333
No 246
>KOG4213|consensus
Probab=29.89 E-value=62 Score=28.06 Aligned_cols=59 Identities=15% Similarity=0.127 Sum_probs=38.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhh-cCCccccccCCCCCC-CccceEEEEEECCHHHHHHHHHcCC
Q psy1757 100 KCKIFVGGLTTEITEQDVRDYFSQ-YGSITEFQQPFDKSK-NMKKGFCFISFDDQNVADQVLKNPK 163 (348)
Q Consensus 100 ~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~~-g~~rG~aFV~F~~~e~A~~Al~~~~ 163 (348)
.++++.. .|+++|.++..= -|.+.+|..-+..+. -..+|-.||+|.+.+.|.+.++...
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e 171 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHE 171 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhh
Confidence 3556654 555555555431 267777766544332 2457889999999999999887643
No 247
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=28.73 E-value=1.6e+02 Score=21.72 Aligned_cols=55 Identities=15% Similarity=0.255 Sum_probs=39.2
Q ss_pred EEEcCCCCcccHHHHHHHhhc-CC-CeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH
Q psy1757 19 LFVGGLHRNTGEKEINDYFSQ-YG-EVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76 (348)
Q Consensus 19 lfVgnLp~~~te~~L~~~F~~-~G-~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~ 76 (348)
-|+=.++.+++..+|++.++. |+ .|.+|+.+.-+ . ..--|||++...+.|...-.
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~--~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-R--GEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CceEEEEEECCCCcHHHHHH
Confidence 445567889999999999986 55 47788777654 2 22259999988777765433
No 248
>KOG1175|consensus
Probab=28.38 E-value=85 Score=32.77 Aligned_cols=90 Identities=19% Similarity=0.217 Sum_probs=55.7
Q ss_pred cccHHHHHHHhhcCCCeeEEEEee--CCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCcccccccccCCCceE
Q psy1757 27 NTGEKEINDYFSQYGEVESISIKN--DPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDPKRVTKRVNPLKCKI 103 (348)
Q Consensus 27 ~~te~~L~~~F~~~G~v~~i~i~~--d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v~~a~~~~~~~~~~l 103 (348)
.+...||++....+..|.++-++- |+.++ ..=+|||.+.+.+.....|.+ ....+. .........+..+
T Consensus 507 RigtaEIE~al~~hp~VaEsAvVg~p~~~~g-e~v~aFvvl~~g~~~~~~L~kel~~~VR-------~~igp~a~P~~I~ 578 (626)
T KOG1175|consen 507 RIGTAEIESALVEHPAVAESAVVGSPDPIKG-EVVLAFVVLKSGSHDPEQLTKELVKHVR-------SVIGPYAVPRLIV 578 (626)
T ss_pred eecHHHHHHHHhhCcchhheeeecCCCCCCC-eEEEEEEEEcCCCCChHHHHHHHHHHHH-------hhcCcccccceeE
Confidence 457899999999999999887764 33333 334899999765333322221 000011 1111122345668
Q ss_pred EEcCCCCCCCHHHHHHHHhhc
Q psy1757 104 FVGGLTTEITEQDVRDYFSQY 124 (348)
Q Consensus 104 ~V~nLp~~~te~~L~~~F~~~ 124 (348)
+|.+||...+-..+|..+.+.
T Consensus 579 ~v~~LPkTrSGKimRr~lrki 599 (626)
T KOG1175|consen 579 FVPGLPKTRSGKIMRRALRKI 599 (626)
T ss_pred ecCCCCccccchhHHHHHHHH
Confidence 899999998888777777653
No 249
>KOG3424|consensus
Probab=27.74 E-value=1.7e+02 Score=23.61 Aligned_cols=48 Identities=23% Similarity=0.427 Sum_probs=28.9
Q ss_pred CcccHHHHHHHhhc-CC----CeeEEEEeeCCCCCCcceEEEEEecCHHHHHHH
Q psy1757 26 RNTGEKEINDYFSQ-YG----EVESISIKNDPYTGQSRGFAFVTYTTQKAVDDL 74 (348)
Q Consensus 26 ~~~te~~L~~~F~~-~G----~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~A 74 (348)
.+++.+||+|-+++ |- .|.-..+...--.|++.|||.| |.+.|.|.+.
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akkf 85 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKKF 85 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHhc
Confidence 45678888877754 32 2333333344456788899976 5666665543
No 250
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=27.63 E-value=3.2e+02 Score=26.93 Aligned_cols=41 Identities=20% Similarity=0.381 Sum_probs=32.0
Q ss_pred CCCCCCCEEEEcCCCCc-ccHHHHHHHhhcC----CCeeEEEEeeC
Q psy1757 11 PGRNDERKLFVGGLHRN-TGEKEINDYFSQY----GEVESISIKND 51 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~-~te~~L~~~F~~~----G~v~~i~i~~d 51 (348)
++-+.+++|-|-|+.|+ +...+|..+|+.| |.|..|.|...
T Consensus 141 e~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 141 EEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 34566788999999987 6778999999876 67888877653
No 251
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=27.54 E-value=2e+02 Score=19.38 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=42.1
Q ss_pred EEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCH----HHHHHHHHhC
Q psy1757 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ----KAVDDLLAAG 78 (348)
Q Consensus 18 ~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~----e~A~~Al~~~ 78 (348)
|+.|.|+...--...|.+.+...--|.++.+-... +-+-|+|... ++..++|+..
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~~ 59 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEKA 59 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHHT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHHh
Confidence 57888998888899999999999889888886543 3677888643 5666666653
No 252
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=26.84 E-value=48 Score=20.73 Aligned_cols=16 Identities=19% Similarity=0.447 Sum_probs=10.4
Q ss_pred CcccHHHHHHHhhcCC
Q psy1757 26 RNTGEKEINDYFSQYG 41 (348)
Q Consensus 26 ~~~te~~L~~~F~~~G 41 (348)
.++++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4789999999998754
No 253
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=26.75 E-value=3.5e+02 Score=26.86 Aligned_cols=6 Identities=17% Similarity=0.196 Sum_probs=2.6
Q ss_pred ceEEEE
Q psy1757 142 KGFCFI 147 (348)
Q Consensus 142 rG~aFV 147 (348)
+|.|++
T Consensus 342 ~G~ai~ 347 (456)
T PRK10590 342 TGEALS 347 (456)
T ss_pred CeeEEE
Confidence 344443
No 254
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=25.70 E-value=1.7e+02 Score=24.44 Aligned_cols=62 Identities=13% Similarity=0.230 Sum_probs=0.0
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhc-CCC-eeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCC
Q psy1757 15 DERKLFVGGLHRNTGEKEINDYFSQ-YGE-VESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGD 79 (348)
Q Consensus 15 ~~~~lfVgnLp~~~te~~L~~~F~~-~G~-v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~ 79 (348)
+...-|+=-++..++..+|++.++. |+. |..|+.+..+ .+.-+ |||.+....+|.......+
T Consensus 80 E~~N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p-~g~KK--A~V~L~~~~~aidva~kiG 143 (145)
T PTZ00191 80 EDNNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITP-DGLKK--AYIRLSPDVDALDVANKIG 143 (145)
T ss_pred hhCCEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcC-CCceE--EEEEECCCCcHHHHHHhhc
No 255
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=24.10 E-value=1.9e+02 Score=27.63 Aligned_cols=111 Identities=8% Similarity=0.066 Sum_probs=55.8
Q ss_pred CCCCcccHHHHHHHh----hcCCCeeEEEEeeCCCCCCcceEEEEEecCHHH-HHHHHHhCCcccCCeecCccccccccc
Q psy1757 23 GLHRNTGEKEINDYF----SQYGEVESISIKNDPYTGQSRGFAFVTYTTQKA-VDDLLAAGDHYIGNKKIDPKRVTKRVN 97 (348)
Q Consensus 23 nLp~~~te~~L~~~F----~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~-A~~Al~~~~~~~~gr~i~v~~a~~~~~ 97 (348)
|.+++-+-+-++..| ++||.-.+++|.+.-.. .+|=+-|.|.-.-. ..+.++.. -.|+..
T Consensus 119 ~~~~sPsvD~~~~v~lP~l~~~G~~~~l~v~rRG~y--P~GgGeV~~~v~p~~~l~~i~l~---~~g~i~---------- 183 (326)
T cd00874 119 DVPWAPPIDYLRNVTLPLLERMGIEAELEVLRRGFY--PRGGGEVVLTVEPSKLLPPLLLE---ERGEIE---------- 183 (326)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCCcC--CCCCEEEEEEEecccCCCcceee---cCCCeE----------
Confidence 455555666665544 67898777888765332 23334455533211 11122210 011111
Q ss_pred CCCceEEEcCCCCCCCHHHHHH---HHhhcCCccccccCCCCCCCccceEEEEEE
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRD---YFSQYGSITEFQQPFDKSKNMKKGFCFISF 149 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~---~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F 149 (348)
...-..++.+||.++.+.+++. .+.+. .+.++.+..+...+.+.|++.+-+
T Consensus 184 ~irg~~~~~~l~~~va~r~~~~a~~~L~~~-~~~dv~i~~~~~~~~s~G~~i~L~ 237 (326)
T cd00874 184 KIRGISHAANLPPHVAERQAEAAAALLRKA-LGLQIEIEPEDQSALGPGSGIVLW 237 (326)
T ss_pred EEEEEEEEccCCHHHHHHHHHHHHHHHhhc-cCCCeEEEEEecCCCCCCEEEEEE
Confidence 1112467889998887766554 44441 223445554444466677765544
No 256
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=24.05 E-value=4.1e+02 Score=23.09 Aligned_cols=9 Identities=33% Similarity=0.696 Sum_probs=4.5
Q ss_pred CEEEEcCCC
Q psy1757 17 RKLFVGGLH 25 (348)
Q Consensus 17 ~~lfVgnLp 25 (348)
+.+.||+|-
T Consensus 6 ~V~LiGrLg 14 (182)
T PRK06958 6 KVILVGNLG 14 (182)
T ss_pred EEEEEEEec
Confidence 344555554
No 257
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=22.68 E-value=1.4e+02 Score=22.07 Aligned_cols=57 Identities=5% Similarity=0.172 Sum_probs=38.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-CccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC
Q psy1757 103 IFVGGLTTEITEQDVRDYFSQ-YG-SITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP 162 (348)
Q Consensus 103 l~V~nLp~~~te~~L~~~F~~-~G-~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~ 162 (348)
-|+-.++...+..+|++.++. |+ .|..|....-.. ..--|||++...+.|...-.++
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHhh
Confidence 445557788999999999998 54 455555443321 1225999999888887766554
No 258
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=21.88 E-value=41 Score=24.18 Aligned_cols=26 Identities=12% Similarity=0.286 Sum_probs=18.2
Q ss_pred CCCCCEEEEcCCCCcccHHHHHHHhh
Q psy1757 13 RNDERKLFVGGLHRNTGEKEINDYFS 38 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~~L~~~F~ 38 (348)
..-+++||||+||..+-++.=..+++
T Consensus 24 s~tSr~vflG~IP~~W~~~~~~~~~k 49 (67)
T PF15407_consen 24 SLTSRRVFLGPIPEIWLQDHRKSWYK 49 (67)
T ss_pred HHcCceEEECCCChHHHHcCcchHHH
Confidence 45689999999998775554444443
No 259
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=21.87 E-value=1.3e+02 Score=22.54 Aligned_cols=57 Identities=5% Similarity=0.163 Sum_probs=39.2
Q ss_pred EEcCCCCCCCHHHHHHHHhh-cC-CccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC
Q psy1757 104 FVGGLTTEITEQDVRDYFSQ-YG-SITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK 163 (348)
Q Consensus 104 ~V~nLp~~~te~~L~~~F~~-~G-~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~ 163 (348)
|+-..+...+..+|++.++. |+ .|.+|....-.. ..--|+|.+...++|.....+++
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~kig 82 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASRLG 82 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHhhc
Confidence 34446778899999999998 55 456665543321 12259999999888887766543
No 260
>PRK11901 hypothetical protein; Reviewed
Probab=21.48 E-value=1.3e+02 Score=28.70 Aligned_cols=57 Identities=7% Similarity=0.199 Sum_probs=0.0
Q ss_pred EEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEE--EECCHHHHHHHHHcC
Q psy1757 104 FVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFI--SFDDQNVADQVLKNP 162 (348)
Q Consensus 104 ~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV--~F~~~e~A~~Al~~~ 162 (348)
|.--|-...+++.|+.+..+.+ +..+.|.....+|+.- |..| .|.+.++|++|+..|
T Consensus 246 YTLQL~Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sL 304 (327)
T PRK11901 246 YTLQLSSASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATL 304 (327)
T ss_pred eEEEeecCCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhC
No 261
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=20.61 E-value=33 Score=33.37 Aligned_cols=61 Identities=15% Similarity=0.216 Sum_probs=48.8
Q ss_pred CceEEEcCCCCCCCH--------HHHHHHHhh--cCCccccccCCCCCCCccceEEEEEECCHHHHHHHHH
Q psy1757 100 KCKIFVGGLTTEITE--------QDVRDYFSQ--YGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK 160 (348)
Q Consensus 100 ~~~l~V~nLp~~~te--------~~L~~~F~~--~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~ 160 (348)
.+.+|+.++....+. +++...|.. .+.+..|+.-++.....++|..|++|...+.+++.+.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 467888888766544 499999998 6777778777776566688889999999999999995
No 262
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=20.33 E-value=2.6e+02 Score=21.72 Aligned_cols=47 Identities=15% Similarity=0.335 Sum_probs=26.8
Q ss_pred cccHHHHHHHhh-cCCCeeEEEEeeCC----CCCCcceEEEEEecCHHHHHHH
Q psy1757 27 NTGEKEINDYFS-QYGEVESISIKNDP----YTGQSRGFAFVTYTTQKAVDDL 74 (348)
Q Consensus 27 ~~te~~L~~~F~-~~G~v~~i~i~~d~----~tg~~kG~aFV~F~~~e~A~~A 74 (348)
+.+..+|++-+. .++.=.+..++..- -.+++.|||.| |.+.+.+.+.
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 557778877774 45543233333222 23567788866 6677766554
No 263
>KOG2295|consensus
Probab=20.06 E-value=18 Score=36.62 Aligned_cols=63 Identities=16% Similarity=0.090 Sum_probs=45.6
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecC---HHHHHHHHH
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTT---QKAVDDLLA 76 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~---~e~A~~Al~ 76 (348)
...++|||.|++++++-++|..+.+.+--+..+-+..........-+.+|+|+. ...|--||+
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn 294 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALN 294 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhh
Confidence 456889999999999999999999988666666655444444555678888864 344444544
No 264
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=20.04 E-value=3e+02 Score=18.82 Aligned_cols=47 Identities=13% Similarity=0.245 Sum_probs=33.0
Q ss_pred cHHHHHHHhhcCCC-eeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCC
Q psy1757 29 GEKEINDYFSQYGE-VESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGD 79 (348)
Q Consensus 29 te~~L~~~F~~~G~-v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~ 79 (348)
.-.+|.++|.+.|- |.++.+.... . ++...+.+.+.+.+.++|+..+
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~---~-~~~~rl~~~~~~~~~~~L~~~G 61 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTS---E-FGILRLIVSDPDKAKEALKEAG 61 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecC---C-CCEEEEEECCHHHHHHHHHHCC
Confidence 44688889988765 7777664432 2 4677777888888888888654
Done!