Query psy1757
Match_columns 348
No_of_seqs 350 out of 2698
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 16:55:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1757.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1757hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 1.9E-36 6.6E-41 264.7 18.6 176 9-184 6-188 (196)
2 2cjk_A Nuclear polyadenylated 100.0 6.6E-35 2.3E-39 248.5 14.0 165 15-180 2-167 (167)
3 4f02_A Polyadenylate-binding p 100.0 2E-34 6.9E-39 256.7 16.2 167 13-181 12-183 (213)
4 2qfj_A FBP-interacting repress 100.0 2.5E-33 8.4E-38 248.7 17.1 169 14-182 26-208 (216)
5 3md3_A Nuclear and cytoplasmic 100.0 3.4E-33 1.2E-37 237.1 16.8 160 17-177 1-165 (166)
6 1b7f_A Protein (SXL-lethal pro 100.0 2.8E-33 9.6E-38 238.5 15.6 162 15-176 2-168 (168)
7 1fxl_A Paraneoplastic encephal 100.0 7.1E-33 2.4E-37 235.3 17.1 162 15-176 1-167 (167)
8 3nmr_A Cugbp ELAV-like family 100.0 7.8E-32 2.7E-36 230.8 16.1 163 14-177 1-175 (175)
9 1fje_B Nucleolin RBD12, protei 100.0 4.9E-32 1.7E-36 232.8 9.7 165 10-180 7-175 (175)
10 2g4b_A Splicing factor U2AF 65 100.0 3.8E-31 1.3E-35 226.3 14.7 158 14-177 2-172 (172)
11 2yh0_A Splicing factor U2AF 65 100.0 9.7E-31 3.3E-35 228.8 15.0 162 14-181 2-196 (198)
12 3smz_A Protein raver-1, ribonu 100.0 8.9E-30 3E-34 235.7 18.7 167 14-181 93-266 (284)
13 3pgw_A U1-A; protein-RNA compl 100.0 1.1E-29 3.6E-34 235.0 18.5 160 10-177 3-281 (282)
14 3tyt_A Heterogeneous nuclear r 100.0 8.2E-30 2.8E-34 225.8 15.4 155 15-176 3-204 (205)
15 2ghp_A U4/U6 snRNA-associated 100.0 1.9E-29 6.6E-34 234.4 16.2 165 14-180 115-292 (292)
16 2ghp_A U4/U6 snRNA-associated 100.0 3E-29 1E-33 233.0 16.4 163 10-181 35-199 (292)
17 2adc_A Polypyrimidine tract-bi 100.0 3.1E-29 1.1E-33 225.5 14.8 159 11-179 29-228 (229)
18 3sde_A Paraspeckle component 1 100.0 7.4E-29 2.5E-33 227.5 14.8 160 10-181 16-181 (261)
19 1qm9_A Polypyrimidine tract-bi 100.0 4E-29 1.4E-33 219.1 12.1 155 15-179 2-197 (198)
20 3smz_A Protein raver-1, ribonu 100.0 2.2E-28 7.5E-33 226.3 17.5 156 14-181 20-177 (284)
21 2kn4_A Immunoglobulin G-bindin 99.9 4.8E-22 1.6E-26 168.2 14.4 136 45-182 2-153 (158)
22 4f25_A Polyadenylate-binding p 99.8 3E-21 1E-25 155.0 9.3 100 15-116 4-113 (115)
23 3pgw_S U1-70K; protein-RNA com 99.8 5.5E-20 1.9E-24 180.1 10.7 83 99-181 101-184 (437)
24 4fxv_A ELAV-like protein 1; RN 99.8 1.5E-19 5E-24 141.2 10.3 81 14-94 17-98 (99)
25 2i2y_A Fusion protein consists 99.8 1.1E-19 3.6E-24 152.6 9.2 121 54-180 9-149 (150)
26 2dgs_A DAZ-associated protein 99.8 5.2E-19 1.8E-23 137.7 11.5 89 9-97 3-91 (99)
27 4fxv_A ELAV-like protein 1; RN 99.8 1.8E-19 6E-24 140.8 8.8 82 97-178 16-98 (99)
28 1h2v_Z 20 kDa nuclear CAP bind 99.8 3.1E-19 1E-23 150.7 10.4 84 98-181 37-121 (156)
29 3s7r_A Heterogeneous nuclear r 99.8 3.6E-19 1.2E-23 135.1 9.8 84 9-92 4-87 (87)
30 2lxi_A RNA-binding protein 10; 99.8 1.2E-19 4.1E-24 139.5 5.7 82 16-97 1-85 (91)
31 2lxi_A RNA-binding protein 10; 99.8 9.1E-19 3.1E-23 134.5 10.5 83 100-182 1-86 (91)
32 2dh8_A DAZ-associated protein 99.8 1.1E-18 3.8E-23 137.2 11.1 91 7-97 7-97 (105)
33 2cqd_A RNA-binding region cont 99.8 2.4E-18 8.3E-23 137.8 13.2 87 96-182 13-99 (116)
34 3s8s_A Histone-lysine N-methyl 99.8 1E-18 3.5E-23 139.1 10.7 82 13-94 3-85 (110)
35 2cqd_A RNA-binding region cont 99.8 1.9E-18 6.6E-23 138.4 11.2 90 8-97 9-98 (116)
36 2lea_A Serine/arginine-rich sp 99.8 4.7E-19 1.6E-23 146.2 7.8 123 60-182 6-130 (135)
37 2dnm_A SRP46 splicing factor; 99.8 1.3E-18 4.6E-23 136.3 9.0 90 7-96 4-94 (103)
38 3lqv_A PRE-mRNA branch site pr 99.8 1.3E-18 4.5E-23 139.1 9.0 104 13-126 5-109 (115)
39 2cq0_A Eukaryotic translation 99.8 2.7E-18 9.3E-23 134.5 10.5 89 9-97 8-97 (103)
40 1x5u_A Splicing factor 3B subu 99.8 3E-18 1E-22 134.7 10.5 90 8-97 7-97 (105)
41 2lkz_A RNA-binding protein 5; 99.8 5E-19 1.7E-23 137.1 5.7 84 11-94 4-94 (95)
42 2rs2_A Musashi-1, RNA-binding 99.8 1.6E-18 5.4E-23 137.7 8.8 88 9-96 18-105 (109)
43 2cqg_A TDP-43, TAR DNA-binding 99.8 6.9E-18 2.4E-22 132.2 12.0 88 9-97 8-95 (103)
44 2dnz_A Probable RNA-binding pr 99.8 4.1E-18 1.4E-22 131.4 10.5 85 13-97 2-87 (95)
45 1s79_A Lupus LA protein; RRM, 99.8 1.4E-18 4.7E-23 136.7 7.9 84 10-94 5-88 (103)
46 1whw_A Hypothetical protein ri 99.8 3.4E-18 1.2E-22 132.9 10.0 86 12-97 4-90 (99)
47 2cpz_A CUG triplet repeat RNA- 99.8 5.4E-18 1.9E-22 135.6 11.4 88 10-97 19-107 (115)
48 1x5s_A Cold-inducible RNA-bind 99.8 3.4E-18 1.2E-22 133.7 9.9 89 9-97 5-94 (102)
49 2dgo_A Cytotoxic granule-assoc 99.8 7.2E-18 2.5E-22 134.8 11.9 89 9-97 8-97 (115)
50 3bs9_A Nucleolysin TIA-1 isofo 99.8 3.6E-18 1.2E-22 129.4 9.6 82 14-95 4-86 (87)
51 2div_A TRNA selenocysteine ass 99.8 5.9E-18 2E-22 131.5 11.0 87 10-96 3-95 (99)
52 1x5t_A Splicing factor 3B subu 99.8 7.9E-18 2.7E-22 130.0 11.6 85 98-182 3-89 (96)
53 3q2s_C Cleavage and polyadenyl 99.8 1.5E-19 5.2E-24 162.4 2.1 81 99-179 67-150 (229)
54 2cqc_A Arginine/serine-rich sp 99.7 5.2E-18 1.8E-22 130.7 10.5 86 9-94 8-94 (95)
55 1u6f_A Tcubp1, RNA-binding pro 99.7 4.5E-18 1.6E-22 140.6 10.7 85 98-182 40-125 (139)
56 2do4_A Squamous cell carcinoma 99.7 8.7E-18 3E-22 130.9 11.6 88 8-96 9-97 (100)
57 2dng_A Eukaryotic translation 99.7 6.5E-18 2.2E-22 132.4 10.8 87 10-97 9-95 (103)
58 2e5h_A Zinc finger CCHC-type a 99.7 5.1E-18 1.8E-22 130.6 9.9 86 7-92 7-93 (94)
59 1whw_A Hypothetical protein ri 99.7 9.9E-18 3.4E-22 130.3 11.5 85 98-182 6-91 (99)
60 2jrs_A RNA-binding protein 39; 99.7 7.9E-18 2.7E-22 133.4 11.0 88 8-95 18-106 (108)
61 3md1_A Nuclear and cytoplasmic 99.7 6.5E-18 2.2E-22 126.8 10.0 80 16-95 1-81 (83)
62 1x5t_A Splicing factor 3B subu 99.7 3.9E-18 1.4E-22 131.7 9.0 85 13-97 2-88 (96)
63 1p27_B RNA-binding protein 8A; 99.7 6.3E-18 2.2E-22 133.1 10.3 86 11-96 18-104 (106)
64 1x4h_A RNA-binding protein 28; 99.7 6.5E-18 2.2E-22 134.0 10.3 89 9-97 8-103 (111)
65 3mdf_A Peptidyl-prolyl CIS-tra 99.7 5E-18 1.7E-22 128.1 8.9 81 12-92 3-84 (85)
66 2dgs_A DAZ-associated protein 99.7 7.5E-18 2.6E-22 131.0 10.1 86 97-182 7-92 (99)
67 1wg5_A Heterogeneous nuclear r 99.7 5.1E-18 1.7E-22 133.5 9.1 86 9-95 8-94 (104)
68 2dgp_A Bruno-like 4, RNA bindi 99.7 5.4E-18 1.9E-22 133.5 9.3 90 8-97 5-98 (106)
69 2kxn_B Transformer-2 protein h 99.7 6.7E-18 2.3E-22 138.2 10.0 87 9-95 39-126 (129)
70 2cph_A RNA binding motif prote 99.7 1E-17 3.6E-22 132.0 10.8 89 9-97 8-99 (107)
71 1wez_A HnRNP H', FTP-3, hetero 99.7 3.9E-18 1.3E-22 133.8 8.2 85 10-96 9-93 (102)
72 2dhg_A TRNA selenocysteine ass 99.7 1.6E-17 5.4E-22 130.3 11.6 86 11-97 4-92 (104)
73 2cqb_A Peptidyl-prolyl CIS-tra 99.7 5.1E-18 1.7E-22 132.7 8.7 89 9-97 5-94 (102)
74 2cqb_A Peptidyl-prolyl CIS-tra 99.7 8.9E-18 3.1E-22 131.3 10.1 87 97-183 9-96 (102)
75 2dnz_A Probable RNA-binding pr 99.7 5.3E-18 1.8E-22 130.8 8.7 84 98-181 3-87 (95)
76 3s8s_A Histone-lysine N-methyl 99.7 5E-18 1.7E-22 135.1 8.7 83 98-180 4-87 (110)
77 2cpf_A RNA binding motif prote 99.7 7E-18 2.4E-22 130.9 9.2 85 13-97 2-90 (98)
78 2dgw_A Probable RNA-binding pr 99.7 1.4E-17 4.6E-22 127.5 10.6 85 9-95 3-87 (91)
79 2lkz_A RNA-binding protein 5; 99.7 3.1E-18 1.1E-22 132.6 7.0 80 99-178 8-94 (95)
80 3p5t_L Cleavage and polyadenyl 99.7 2.7E-18 9.1E-23 131.4 6.5 80 17-96 2-84 (90)
81 2mss_A Protein (musashi1); RNA 99.7 2.7E-18 9.1E-23 126.6 6.3 75 18-92 1-75 (75)
82 1x5u_A Splicing factor 3B subu 99.7 1E-17 3.6E-22 131.6 10.1 87 96-182 11-98 (105)
83 2cpz_A CUG triplet repeat RNA- 99.7 9.3E-18 3.2E-22 134.2 9.9 87 97-183 22-109 (115)
84 2d9p_A Polyadenylate-binding p 99.7 1.6E-17 5.3E-22 130.2 11.0 87 9-97 8-95 (103)
85 1wi8_A EIF-4B, eukaryotic tran 99.7 8.8E-18 3E-22 131.9 9.5 86 11-97 10-96 (104)
86 1x4b_A Heterogeneous nuclear r 99.7 4.2E-18 1.4E-22 136.5 7.7 84 14-97 25-108 (116)
87 2dnh_A Bruno-like 5, RNA bindi 99.7 2.4E-17 8.3E-22 129.5 11.9 86 11-97 10-99 (105)
88 2ywk_A Putative RNA-binding pr 99.7 9E-18 3.1E-22 129.4 9.3 84 9-93 9-93 (95)
89 2cpy_A RNA-binding protein 12; 99.7 3.5E-18 1.2E-22 136.7 7.1 84 11-95 10-94 (114)
90 1x5s_A Cold-inducible RNA-bind 99.7 7E-18 2.4E-22 131.9 8.7 86 97-182 9-95 (102)
91 2la6_A RNA-binding protein FUS 99.7 2E-17 6.8E-22 128.7 11.2 84 9-92 6-98 (99)
92 3ucg_A Polyadenylate-binding p 99.7 8.2E-18 2.8E-22 128.0 8.8 81 15-95 5-85 (89)
93 2fy1_A RNA-binding motif prote 99.7 1.3E-17 4.5E-22 133.8 10.3 84 98-182 5-89 (116)
94 2cq4_A RNA binding motif prote 99.7 2.4E-18 8.4E-23 137.4 6.0 82 14-95 23-104 (114)
95 2khc_A Testis-specific RNP-typ 99.7 9.8E-18 3.4E-22 134.6 9.5 82 11-92 35-117 (118)
96 2hgn_A Heterogeneous nuclear r 99.7 1.1E-18 3.9E-23 144.4 3.9 121 59-181 2-125 (139)
97 1u6f_A Tcubp1, RNA-binding pro 99.7 1.6E-17 5.4E-22 137.3 10.7 88 10-97 36-124 (139)
98 2dgo_A Cytotoxic granule-assoc 99.7 3.9E-17 1.3E-21 130.5 12.7 87 97-183 12-99 (115)
99 2cqg_A TDP-43, TAR DNA-binding 99.7 2.4E-17 8.1E-22 129.1 11.1 86 97-183 12-97 (103)
100 1x4e_A RNA binding motif, sing 99.7 6.8E-18 2.3E-22 127.5 7.7 81 13-93 2-83 (85)
101 1oo0_B CG8781-PA, drosophila Y 99.7 1.2E-17 4E-22 132.5 9.4 87 10-96 20-107 (110)
102 2x1f_A MRNA 3'-END-processing 99.7 1.3E-17 4.6E-22 128.9 9.5 82 15-96 1-83 (96)
103 2cpe_A RNA-binding protein EWS 99.7 1.7E-17 5.9E-22 132.2 10.3 88 10-97 9-105 (113)
104 3ns6_A Eukaryotic translation 99.7 4.3E-18 1.5E-22 133.0 6.7 82 14-95 4-93 (100)
105 2dgv_A HnRNP M, heterogeneous 99.7 3.9E-17 1.3E-21 125.1 11.8 84 12-97 4-88 (92)
106 2cq0_A Eukaryotic translation 99.7 1.2E-17 4.3E-22 130.7 9.1 87 96-182 11-98 (103)
107 3s7r_A Heterogeneous nuclear r 99.7 1.6E-17 5.4E-22 126.0 9.3 80 97-176 8-87 (87)
108 2j76_E EIF-4B, EIF4B, eukaryot 99.7 6.2E-18 2.1E-22 132.0 7.2 86 9-95 12-98 (100)
109 2fy1_A RNA-binding motif prote 99.7 1.8E-17 6.2E-22 133.0 10.1 84 12-96 3-87 (116)
110 1sjq_A Polypyrimidine tract-bi 99.7 1.9E-17 6.4E-22 130.1 9.8 80 12-97 12-94 (105)
111 1uaw_A Mouse-musashi-1; RNP-ty 99.7 4E-18 1.4E-22 126.1 5.6 76 17-92 1-76 (77)
112 2dgp_A Bruno-like 4, RNA bindi 99.7 1.8E-17 6.1E-22 130.5 9.7 87 96-182 9-99 (106)
113 1iqt_A AUF1, heterogeneous nuc 99.7 3.3E-18 1.1E-22 126.0 5.1 75 18-92 1-75 (75)
114 2cpe_A RNA-binding protein EWS 99.7 2.4E-17 8.1E-22 131.4 10.5 87 96-182 11-106 (113)
115 2rs2_A Musashi-1, RNA-binding 99.7 1.7E-17 5.9E-22 131.6 9.5 86 97-182 22-107 (109)
116 2cqi_A Nucleolysin TIAR; RNA r 99.7 3.4E-17 1.2E-21 128.2 11.1 87 9-97 8-95 (103)
117 2cq3_A RNA-binding protein 9; 99.7 5E-17 1.7E-21 127.3 12.0 88 8-97 7-95 (103)
118 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.3E-17 4.5E-22 126.3 8.4 82 98-179 4-86 (87)
119 3ex7_B RNA-binding protein 8A; 99.7 1.1E-17 3.8E-22 135.9 8.5 87 97-183 19-106 (126)
120 1x4b_A Heterogeneous nuclear r 99.7 2E-17 6.9E-22 132.4 9.9 84 99-182 26-109 (116)
121 2cph_A RNA binding motif prote 99.7 2E-17 6.7E-22 130.4 9.6 87 96-182 11-100 (107)
122 1wi8_A EIF-4B, eukaryotic tran 99.7 3E-17 1E-21 128.9 10.6 83 98-182 13-97 (104)
123 3n9u_C Cleavage and polyadenyl 99.7 1.5E-17 5.2E-22 140.5 9.5 82 14-95 53-137 (156)
124 2dnn_A RNA-binding protein 12; 99.7 8.5E-18 2.9E-22 133.5 7.4 84 9-94 9-92 (109)
125 1x4h_A RNA-binding protein 28; 99.7 2.6E-17 9.1E-22 130.5 10.3 87 97-183 12-105 (111)
126 2db1_A Heterogeneous nuclear r 99.7 9.9E-18 3.4E-22 135.0 7.9 84 10-94 11-97 (118)
127 2cpf_A RNA binding motif prote 99.7 1.7E-17 5.8E-22 128.7 8.9 85 98-182 3-91 (98)
128 2hvz_A Splicing factor, argini 99.7 6.8E-18 2.3E-22 131.8 6.5 88 17-109 1-100 (101)
129 3ulh_A THO complex subunit 4; 99.7 2.8E-17 9.7E-22 129.5 10.2 83 10-93 23-106 (107)
130 2dnm_A SRP46 splicing factor; 99.7 1.1E-17 3.7E-22 131.1 7.6 86 97-182 10-96 (103)
131 2do0_A HnRNP M, heterogeneous 99.7 6E-17 2E-21 129.1 12.1 86 9-95 8-94 (114)
132 2hgm_A HNRPF protein, heteroge 99.7 1.2E-17 3.9E-22 136.0 7.7 84 10-95 36-121 (126)
133 2m2b_A RNA-binding protein 10; 99.7 1.1E-17 3.9E-22 137.0 7.7 86 10-96 17-109 (131)
134 1h2v_Z 20 kDa nuclear CAP bind 99.7 4.1E-17 1.4E-21 137.6 11.2 84 11-94 34-118 (156)
135 2dh8_A DAZ-associated protein 99.7 1.3E-17 4.4E-22 131.2 7.5 86 97-182 13-98 (105)
136 3md1_A Nuclear and cytoplasmic 99.7 2.7E-17 9.4E-22 123.4 8.6 80 101-180 2-82 (83)
137 1p1t_A Cleavage stimulation fa 99.7 8.9E-18 3.1E-22 131.7 6.1 84 12-95 4-88 (104)
138 2hgl_A HNRPF protein, heteroge 99.7 1.2E-17 4E-22 137.9 7.0 84 10-94 38-124 (136)
139 3ex7_B RNA-binding protein 8A; 99.7 3E-17 1E-21 133.3 9.4 88 10-97 16-104 (126)
140 2cqp_A RNA-binding protein 12; 99.7 1.8E-17 6E-22 128.6 7.6 85 11-95 10-95 (98)
141 1wel_A RNA-binding protein 12; 99.7 8.1E-18 2.8E-22 136.5 5.9 84 11-94 20-103 (124)
142 2dng_A Eukaryotic translation 99.7 5.2E-17 1.8E-21 127.2 10.3 85 97-182 12-96 (103)
143 2dhg_A TRNA selenocysteine ass 99.7 2.3E-17 7.9E-22 129.4 8.1 85 97-182 6-93 (104)
144 3mdf_A Peptidyl-prolyl CIS-tra 99.7 3.2E-17 1.1E-21 123.6 8.5 80 98-177 5-85 (85)
145 2ek1_A RNA-binding protein 12; 99.7 1.3E-17 4.3E-22 128.6 6.4 83 11-93 10-93 (95)
146 2lmi_A GRSF-1, G-rich sequence 99.7 1.4E-17 4.8E-22 131.6 6.6 84 10-94 5-91 (107)
147 4a8x_A RNA-binding protein wit 99.7 2.8E-17 9.7E-22 124.6 8.1 82 14-95 2-85 (88)
148 2jwn_A Embryonic polyadenylate 99.7 3E-17 1E-21 133.0 8.7 82 15-96 35-116 (124)
149 2x1f_A MRNA 3'-END-processing 99.7 4.4E-17 1.5E-21 126.0 9.3 82 100-181 2-84 (96)
150 1rk8_A CG8781-PA, CG8781-PA pr 99.7 3E-17 1E-21 139.8 9.0 85 99-183 71-156 (165)
151 2dgx_A KIAA0430 protein; RRM d 99.7 4.6E-17 1.6E-21 126.0 9.2 84 11-97 4-92 (96)
152 1oo0_B CG8781-PA, drosophila Y 99.7 6.3E-17 2.2E-21 128.2 10.1 85 97-181 23-108 (110)
153 3p5t_L Cleavage and polyadenyl 99.7 7.1E-18 2.4E-22 129.0 4.4 81 101-181 2-85 (90)
154 2e5h_A Zinc finger CCHC-type a 99.7 4.4E-17 1.5E-21 125.3 8.9 81 97-177 13-94 (94)
155 2kt5_A RNA and export factor-b 99.7 8.4E-17 2.9E-21 130.4 10.9 85 11-96 30-115 (124)
156 2div_A TRNA selenocysteine ass 99.7 4.9E-17 1.7E-21 126.3 9.0 85 97-181 6-96 (99)
157 2dha_A FLJ20171 protein; RRM d 99.7 2.6E-17 8.7E-22 133.5 7.6 80 13-93 20-103 (123)
158 2do4_A Squamous cell carcinoma 99.7 4.7E-17 1.6E-21 126.8 8.8 84 97-181 14-98 (100)
159 2d9p_A Polyadenylate-binding p 99.7 3.4E-17 1.2E-21 128.2 8.0 85 97-183 12-97 (103)
160 1x4a_A Splicing factor, argini 99.7 1.2E-16 4.2E-21 126.4 11.3 85 10-97 16-101 (109)
161 2dis_A Unnamed protein product 99.7 4.8E-17 1.6E-21 128.6 8.9 85 13-97 5-94 (109)
162 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.1E-16 3.6E-21 125.4 10.6 85 97-183 12-97 (103)
163 2ad9_A Polypyrimidine tract-bi 99.7 4.5E-17 1.5E-21 131.0 8.5 84 8-97 23-109 (119)
164 1p27_B RNA-binding protein 8A; 99.7 4.4E-17 1.5E-21 128.2 8.3 84 98-181 21-105 (106)
165 2dis_A Unnamed protein product 99.7 1.5E-16 5E-21 125.8 11.3 85 98-182 6-95 (109)
166 2lea_A Serine/arginine-rich sp 99.7 2.4E-17 8.2E-22 135.9 6.9 90 9-98 40-130 (135)
167 2cqc_A Arginine/serine-rich sp 99.7 5.7E-17 2E-21 124.8 8.4 82 97-178 12-94 (95)
168 2cpy_A RNA-binding protein 12; 99.7 6.7E-17 2.3E-21 129.2 9.1 82 98-180 13-95 (114)
169 1x4c_A Splicing factor, argini 99.7 1.5E-16 5.3E-21 125.8 11.1 78 98-182 13-96 (108)
170 2cqp_A RNA-binding protein 12; 99.7 8.8E-17 3E-21 124.6 9.4 84 97-180 12-96 (98)
171 2xs2_A Deleted in azoospermia- 99.7 1.6E-17 5.5E-22 129.9 5.1 84 11-96 4-87 (102)
172 1wez_A HnRNP H', FTP-3, hetero 99.7 3E-17 1E-21 128.8 6.6 81 98-180 13-93 (102)
173 2cq3_A RNA-binding protein 9; 99.7 1.3E-16 4.5E-21 124.8 10.4 85 97-183 12-97 (103)
174 2cq1_A PTB-like protein L; RRM 99.7 1.5E-16 5.3E-21 124.4 10.5 82 10-97 9-93 (101)
175 1x5o_A RNA binding motif, sing 99.7 1.5E-16 5.3E-21 126.8 10.7 74 10-84 19-93 (114)
176 4f25_A Polyadenylate-binding p 99.7 4.9E-17 1.7E-21 130.2 7.8 81 100-182 5-86 (115)
177 2mss_A Protein (musashi1); RNA 99.7 5.3E-17 1.8E-21 119.5 7.3 75 102-176 1-75 (75)
178 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.1E-17 7.2E-22 122.2 5.1 76 101-176 1-76 (77)
179 2wbr_A GW182, gawky, LD47780P; 99.7 9.3E-17 3.2E-21 121.1 8.5 72 15-92 6-78 (89)
180 1fj7_A Nucleolin RBD1, protein 99.7 8.3E-18 2.8E-22 131.3 2.7 87 11-98 12-98 (101)
181 1x4a_A Splicing factor, argini 99.7 1.4E-16 4.9E-21 126.0 9.9 82 97-181 19-101 (109)
182 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.1E-16 3.8E-21 132.1 9.6 83 10-92 57-140 (140)
183 2dnh_A Bruno-like 5, RNA bindi 99.7 8.1E-17 2.8E-21 126.5 8.3 84 98-182 13-100 (105)
184 3ns6_A Eukaryotic translation 99.7 1.9E-17 6.4E-22 129.3 4.5 82 99-180 5-94 (100)
185 2jrs_A RNA-binding protein 39; 99.7 5.3E-17 1.8E-21 128.6 7.1 86 95-180 21-107 (108)
186 1iqt_A AUF1, heterogeneous nuc 99.7 4.8E-17 1.6E-21 119.7 6.4 75 102-176 1-75 (75)
187 3ucg_A Polyadenylate-binding p 99.7 1.2E-16 3.9E-21 121.6 8.7 81 100-180 6-86 (89)
188 2hgn_A Heterogeneous nuclear r 99.7 2.3E-17 8E-22 136.5 5.2 84 11-96 41-124 (139)
189 1sjq_A Polypyrimidine tract-bi 99.7 5.6E-17 1.9E-21 127.4 7.1 81 97-183 13-96 (105)
190 4a8x_A RNA-binding protein wit 99.7 8.4E-17 2.9E-21 122.0 7.8 83 99-181 3-87 (88)
191 3r27_A HnRNP L, heterogeneous 99.7 9.2E-17 3.1E-21 125.0 8.1 83 8-96 13-98 (100)
192 1s79_A Lupus LA protein; RRM, 99.7 5.1E-17 1.7E-21 127.7 6.7 80 98-178 9-88 (103)
193 2kn4_A Immunoglobulin G-bindin 99.7 1.5E-16 5E-21 134.3 10.1 87 11-97 65-152 (158)
194 2cpi_A CCR4-NOT transcription 99.7 1E-16 3.4E-21 127.6 8.5 86 11-96 10-102 (111)
195 2err_A Ataxin-2-binding protei 99.7 9.4E-17 3.2E-21 127.3 8.1 85 9-95 22-107 (109)
196 2do0_A HnRNP M, heterogeneous 99.7 3.3E-16 1.1E-20 124.8 11.4 84 97-181 12-96 (114)
197 2ki2_A SS-DNA binding protein 99.7 2.5E-17 8.4E-22 125.7 4.6 79 17-96 2-81 (90)
198 2khc_A Testis-specific RNP-typ 99.7 7.1E-17 2.4E-21 129.6 7.4 81 97-177 37-118 (118)
199 1wg5_A Heterogeneous nuclear r 99.7 1.6E-16 5.4E-21 124.9 9.1 83 98-181 13-96 (104)
200 1x4d_A Matrin 3; structural ge 99.7 1.7E-16 5.8E-21 124.3 9.2 80 10-95 9-92 (102)
201 2dgx_A KIAA0430 protein; RRM d 99.7 2.2E-16 7.6E-21 122.2 9.7 81 98-181 7-92 (96)
202 2hgl_A HNRPF protein, heteroge 99.7 7.7E-17 2.6E-21 133.0 7.5 83 97-180 41-126 (136)
203 2dgu_A Heterogeneous nuclear r 99.7 4.2E-16 1.4E-20 122.1 11.3 79 98-184 9-88 (103)
204 3q2s_C Cleavage and polyadenyl 99.7 7.1E-17 2.4E-21 144.9 7.8 80 15-94 67-149 (229)
205 2ek1_A RNA-binding protein 12; 99.7 9.7E-17 3.3E-21 123.6 7.5 81 98-178 13-94 (95)
206 3n9u_C Cleavage and polyadenyl 99.7 1.2E-16 4.1E-21 135.0 8.5 81 99-179 54-137 (156)
207 2m2b_A RNA-binding protein 10; 99.7 6.5E-17 2.2E-21 132.5 6.7 85 97-182 20-111 (131)
208 2dgw_A Probable RNA-binding pr 99.7 3.3E-16 1.1E-20 119.7 10.2 82 97-181 7-89 (91)
209 2la6_A RNA-binding protein FUS 99.7 1.2E-16 4E-21 124.3 7.6 81 97-177 10-99 (99)
210 2fc9_A NCL protein; structure 99.7 2.3E-16 7.7E-21 123.1 9.3 84 10-97 9-93 (101)
211 2kxn_B Transformer-2 protein h 99.7 5.3E-17 1.8E-21 132.8 5.8 85 97-181 43-128 (129)
212 2ywk_A Putative RNA-binding pr 99.7 1.2E-16 4.2E-21 123.0 7.5 81 97-178 13-94 (95)
213 2krb_A Eukaryotic translation 99.7 1.7E-16 5.9E-21 118.7 8.0 72 16-89 1-80 (81)
214 2fc8_A NCL protein; structure 99.7 3.1E-16 1.1E-20 122.4 9.7 86 9-97 8-94 (102)
215 1rk8_A CG8781-PA, CG8781-PA pr 99.7 3E-16 1E-20 133.6 10.4 86 11-96 67-153 (165)
216 1wex_A Hypothetical protein (r 99.7 6.1E-16 2.1E-20 121.6 11.4 80 11-96 10-92 (104)
217 2cq4_A RNA binding motif prote 99.7 5.7E-17 2E-21 129.4 5.4 82 100-181 25-106 (114)
218 2fc9_A NCL protein; structure 99.7 4.3E-16 1.5E-20 121.4 10.2 81 97-181 12-93 (101)
219 2nlw_A Eukaryotic translation 99.7 1.9E-16 6.7E-21 124.6 8.2 83 11-95 10-100 (105)
220 2fc8_A NCL protein; structure 99.7 2.4E-16 8.2E-21 123.1 8.6 82 97-181 12-94 (102)
221 1x4c_A Splicing factor, argini 99.7 4.5E-16 1.6E-20 123.1 10.2 81 10-97 9-95 (108)
222 2dgv_A HnRNP M, heterogeneous 99.7 1.7E-16 5.8E-21 121.5 7.3 84 97-182 5-89 (92)
223 2lcw_A RNA-binding protein FUS 99.5 8.5E-18 2.9E-22 134.7 0.0 85 98-182 5-98 (116)
224 1fj7_A Nucleolin RBD1, protein 99.7 8.9E-17 3E-21 125.4 5.8 83 98-182 15-98 (101)
225 2dnq_A RNA-binding protein 4B; 99.6 6.2E-16 2.1E-20 118.0 10.1 78 12-97 4-82 (90)
226 2cpi_A CCR4-NOT transcription 99.6 1.5E-16 5.1E-21 126.5 6.8 83 99-181 14-103 (111)
227 2la4_A Nuclear and cytoplasmic 99.6 5.5E-16 1.9E-20 120.8 9.9 77 12-94 23-100 (101)
228 3ulh_A THO complex subunit 4; 99.6 3.1E-16 1.1E-20 123.5 8.5 80 97-177 26-106 (107)
229 1p1t_A Cleavage stimulation fa 99.6 1.5E-16 5.1E-21 124.6 6.6 83 99-181 7-90 (104)
230 2cpx_A Hypothetical protein FL 99.6 2.3E-16 7.7E-21 126.0 7.8 85 98-182 23-108 (115)
231 2jwn_A Embryonic polyadenylate 99.6 3.1E-16 1.1E-20 126.9 8.7 81 100-181 36-117 (124)
232 2ytc_A PRE-mRNA-splicing facto 99.6 6.6E-16 2.3E-20 116.4 9.9 78 9-92 5-84 (85)
233 1why_A Hypothetical protein ri 99.6 8.1E-16 2.8E-20 119.0 10.4 81 10-96 11-94 (97)
234 2dgt_A RNA-binding protein 30; 99.6 1E-15 3.5E-20 117.3 10.8 78 97-182 7-85 (92)
235 2jvr_A Nucleolar protein 3; RN 99.6 5E-16 1.7E-20 123.6 9.3 81 97-181 25-107 (111)
236 2e5g_A U6 snRNA-specific termi 99.6 1.3E-15 4.5E-20 117.2 11.2 80 12-96 4-83 (94)
237 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.3E-16 4.3E-21 124.5 5.3 82 97-180 16-99 (100)
238 2ki2_A SS-DNA binding protein 99.6 7.8E-17 2.7E-21 122.9 4.0 80 101-181 2-82 (90)
239 2db1_A Heterogeneous nuclear r 99.6 4.2E-16 1.4E-20 125.4 8.5 82 98-180 15-99 (118)
240 2a3j_A U1 small nuclear ribonu 99.6 4.5E-16 1.6E-20 126.8 8.8 83 10-95 23-110 (127)
241 1fjc_A Nucleolin RBD2, protein 99.6 6.3E-16 2.2E-20 119.3 9.2 83 94-181 10-93 (96)
242 1x4d_A Matrin 3; structural ge 99.6 2.5E-16 8.7E-21 123.3 6.9 78 98-181 13-94 (102)
243 2dnn_A RNA-binding protein 12; 99.6 4.2E-16 1.4E-20 123.6 8.2 79 100-180 16-94 (109)
244 2cq1_A PTB-like protein L; RRM 99.6 5.8E-16 2E-20 121.1 8.8 81 97-183 12-95 (101)
245 1wf1_A RNA-binding protein RAL 99.6 6.8E-16 2.3E-20 122.3 9.3 92 82-181 5-102 (110)
246 2dgt_A RNA-binding protein 30; 99.6 9.6E-16 3.3E-20 117.4 9.8 82 8-97 2-84 (92)
247 2dnq_A RNA-binding protein 4B; 99.6 4.5E-16 1.6E-20 118.8 7.8 78 97-182 5-83 (90)
248 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 9.7E-16 3.3E-20 126.3 10.3 80 97-176 60-140 (140)
249 2ad9_A Polypyrimidine tract-bi 99.6 4.3E-16 1.5E-20 125.2 7.8 81 97-183 28-111 (119)
250 2dnl_A Cytoplasmic polyadenyla 99.6 4E-16 1.4E-20 124.7 7.6 80 11-92 3-85 (114)
251 2cpx_A Hypothetical protein FL 99.6 1.7E-16 5.9E-21 126.6 5.4 87 11-97 20-107 (115)
252 1x4g_A Nucleolysin TIAR; struc 99.6 6.6E-16 2.3E-20 122.2 8.7 82 96-183 21-103 (109)
253 2cpj_A Non-POU domain-containi 99.6 1E-15 3.5E-20 118.9 9.4 81 10-96 9-90 (99)
254 2lcw_A RNA-binding protein FUS 99.4 2.4E-17 8.1E-22 132.1 0.0 86 12-97 3-97 (116)
255 2kt5_A RNA and export factor-b 99.6 6.2E-16 2.1E-20 125.2 8.4 83 98-181 33-116 (124)
256 2err_A Ataxin-2-binding protei 99.6 6E-16 2.1E-20 122.6 8.0 81 97-179 26-107 (109)
257 3r27_A HnRNP L, heterogeneous 99.6 5.5E-16 1.9E-20 120.5 7.5 78 97-180 18-98 (100)
258 2f3j_A RNA and export factor b 99.6 7E-16 2.4E-20 133.0 9.0 84 12-96 84-168 (177)
259 1x4g_A Nucleolysin TIAR; struc 99.6 1.2E-15 4E-20 120.8 9.5 80 12-97 21-101 (109)
260 2hvz_A Splicing factor, argini 99.6 9.9E-16 3.4E-20 119.4 8.6 76 101-181 1-77 (101)
261 1x4f_A Matrin 3; structural ge 99.6 6.2E-16 2.1E-20 122.9 7.5 79 12-96 21-103 (112)
262 2hgm_A HNRPF protein, heteroge 99.6 2.8E-16 9.7E-21 127.7 5.6 81 98-180 40-122 (126)
263 2dgu_A Heterogeneous nuclear r 99.6 1.3E-15 4.4E-20 119.3 9.0 80 10-97 5-85 (103)
264 3d2w_A TAR DNA-binding protein 99.6 6.4E-16 2.2E-20 118.0 7.0 80 11-96 6-85 (89)
265 2dha_A FLJ20171 protein; RRM d 99.6 4.6E-16 1.6E-20 126.0 6.6 82 98-180 21-106 (123)
266 1wel_A RNA-binding protein 12; 99.6 3.6E-16 1.2E-20 126.8 5.9 82 99-180 24-105 (124)
267 1wex_A Hypothetical protein (r 99.6 9.9E-16 3.4E-20 120.5 8.2 80 97-182 12-94 (104)
268 2wbr_A GW182, gawky, LD47780P; 99.6 5.9E-16 2E-20 116.7 6.5 73 100-178 7-80 (89)
269 2cqh_A IGF-II mRNA-binding pro 99.6 1.5E-15 5.2E-20 116.5 8.9 78 98-182 6-86 (93)
270 3beg_B Splicing factor, argini 99.6 4.6E-16 1.6E-20 124.6 6.2 76 99-181 15-96 (115)
271 2e5j_A Methenyltetrahydrofolat 99.6 1.6E-15 5.6E-20 117.4 9.1 81 11-96 14-95 (97)
272 1wf0_A TDP-43, TAR DNA-binding 99.6 8.2E-16 2.8E-20 116.8 7.2 78 99-182 4-81 (88)
273 1fjc_A Nucleolin RBD2, protein 99.6 4.9E-16 1.7E-20 119.9 6.0 83 9-96 9-92 (96)
274 1l3k_A Heterogeneous nuclear r 99.6 1.7E-15 5.8E-20 131.4 10.1 84 14-97 102-185 (196)
275 1nu4_A U1A RNA binding domain; 99.6 5.1E-16 1.7E-20 120.0 6.0 83 11-96 3-90 (97)
276 2nlw_A Eukaryotic translation 99.6 9.1E-16 3.1E-20 120.7 7.5 82 98-181 13-102 (105)
277 2xs2_A Deleted in azoospermia- 99.6 4.3E-16 1.5E-20 121.7 5.6 81 99-181 8-88 (102)
278 1wf1_A RNA-binding protein RAL 99.6 2.8E-15 9.6E-20 118.8 10.3 76 13-96 24-101 (110)
279 2lmi_A GRSF-1, G-rich sequence 99.6 4.9E-16 1.7E-20 122.7 5.8 83 97-180 8-93 (107)
280 1wf0_A TDP-43, TAR DNA-binding 99.6 4.3E-16 1.5E-20 118.4 5.2 79 13-97 2-80 (88)
281 2jvo_A Nucleolar protein 3; nu 99.6 2E-15 6.8E-20 119.5 9.2 79 10-96 25-104 (108)
282 2dnp_A RNA-binding protein 14; 99.6 2.4E-15 8E-20 114.8 9.3 77 97-181 6-83 (90)
283 2dnp_A RNA-binding protein 14; 99.6 1.9E-15 6.4E-20 115.3 8.7 80 10-97 3-83 (90)
284 2kvi_A Nuclear polyadenylated 99.6 1.5E-15 5.1E-20 117.4 8.2 79 11-97 5-85 (96)
285 1x4e_A RNA binding motif, sing 99.6 9.6E-17 3.3E-21 121.1 1.3 79 98-176 3-82 (85)
286 2jvr_A Nucleolar protein 3; RN 99.6 7.4E-16 2.5E-20 122.6 6.5 80 12-95 24-105 (111)
287 2cpd_A Apobec-1 stimulating pr 99.6 4.9E-15 1.7E-19 115.0 10.8 80 10-97 9-91 (99)
288 2xnq_A Nuclear polyadenylated 99.6 3.1E-15 1.1E-19 116.0 9.5 78 10-95 16-95 (97)
289 1why_A Hypothetical protein ri 99.6 1.4E-15 4.8E-20 117.7 7.4 79 97-181 14-95 (97)
290 2cpj_A Non-POU domain-containi 99.6 1.4E-15 4.8E-20 118.1 7.4 80 97-182 12-92 (99)
291 3md3_A Nuclear and cytoplasmic 99.6 5E-15 1.7E-19 124.6 11.3 84 10-93 81-165 (166)
292 2cpd_A Apobec-1 stimulating pr 99.6 4.2E-15 1.4E-19 115.4 9.9 77 97-181 12-91 (99)
293 3d2w_A TAR DNA-binding protein 99.6 2.4E-15 8.3E-20 114.8 8.0 79 97-181 8-86 (89)
294 2i2y_A Fusion protein consists 99.6 2.9E-15 9.8E-20 125.4 9.1 81 10-95 67-148 (150)
295 1x5o_A RNA binding motif, sing 99.6 1.2E-15 4.1E-20 121.6 6.4 82 97-179 22-112 (114)
296 2e44_A Insulin-like growth fac 99.6 3.1E-15 1.1E-19 115.3 8.4 82 10-95 9-92 (96)
297 2ytc_A PRE-mRNA-splicing facto 99.6 3.5E-15 1.2E-19 112.3 8.5 76 96-177 8-85 (85)
298 1whx_A Hypothetical protein ri 99.6 1.2E-15 4E-20 121.4 6.0 78 12-95 6-84 (111)
299 2krb_A Eukaryotic translation 99.6 8.9E-16 3.1E-20 114.8 4.9 72 100-173 1-80 (81)
300 2cjk_A Nuclear polyadenylated 99.6 1.2E-15 4.2E-20 128.9 6.3 81 15-95 86-166 (167)
301 2kvi_A Nuclear polyadenylated 99.6 1.1E-15 3.9E-20 118.1 5.5 78 97-182 7-86 (96)
302 2voo_A Lupus LA protein; RNA-b 99.6 4.2E-15 1.4E-19 129.9 9.8 78 16-94 109-186 (193)
303 2a3j_A U1 small nuclear ribonu 99.6 2.6E-15 8.9E-20 122.3 7.8 82 97-181 26-112 (127)
304 2la4_A Nuclear and cytoplasmic 99.6 1.4E-15 4.7E-20 118.6 5.9 77 97-179 24-101 (101)
305 2cqh_A IGF-II mRNA-binding pro 99.6 2.2E-15 7.6E-20 115.5 6.8 79 12-97 4-85 (93)
306 2e5g_A U6 snRNA-specific termi 99.6 6.2E-15 2.1E-19 113.4 9.2 78 98-181 6-84 (94)
307 2j8a_A Histone-lysine N-methyl 99.6 2.1E-15 7.2E-20 121.3 6.7 77 17-93 3-94 (136)
308 2voo_A Lupus LA protein; RNA-b 99.6 1E-14 3.5E-19 127.4 11.5 113 67-180 63-188 (193)
309 2e5j_A Methenyltetrahydrofolat 99.6 2.6E-15 8.8E-20 116.2 6.6 79 98-181 17-96 (97)
310 2qfj_A FBP-interacting repress 99.6 9.3E-15 3.2E-19 128.7 10.9 84 14-97 123-207 (216)
311 1x5p_A Negative elongation fac 99.6 1.8E-14 6.1E-19 111.5 11.2 79 10-96 9-88 (97)
312 1x4f_A Matrin 3; structural ge 99.6 1.4E-15 4.8E-20 120.9 4.9 80 97-182 22-105 (112)
313 1wg1_A KIAA1579 protein, homol 99.6 4E-15 1.4E-19 113.1 7.1 74 14-94 3-77 (88)
314 2g4b_A Splicing factor U2AF 65 99.6 8.5E-15 2.9E-19 124.3 9.9 81 12-92 90-171 (172)
315 2dnl_A Cytoplasmic polyadenyla 99.6 7.1E-15 2.4E-19 117.3 8.8 78 98-177 6-86 (114)
316 2jvo_A Nucleolar protein 3; nu 99.6 4.3E-15 1.5E-19 117.6 7.2 77 97-181 28-105 (108)
317 1nu4_A U1A RNA binding domain; 99.6 3.3E-15 1.1E-19 115.4 6.2 82 97-181 5-91 (97)
318 2f3j_A RNA and export factor b 99.6 5E-15 1.7E-19 127.6 7.9 82 98-180 86-168 (177)
319 3beg_B Splicing factor, argini 99.6 3.9E-15 1.3E-19 119.1 6.7 72 13-91 13-85 (115)
320 1x5p_A Negative elongation fac 99.6 1.5E-14 5.1E-19 111.9 9.7 78 97-182 12-90 (97)
321 2hzc_A Splicing factor U2AF 65 99.6 5.1E-15 1.8E-19 111.8 6.8 73 13-91 3-86 (87)
322 4f02_A Polyadenylate-binding p 99.6 7.1E-15 2.4E-19 130.1 8.7 82 99-180 14-96 (213)
323 3pgw_S U1-70K; protein-RNA com 99.6 8.5E-15 2.9E-19 143.3 10.1 83 13-95 99-182 (437)
324 2xnq_A Nuclear polyadenylated 99.5 1.2E-14 4.1E-19 112.7 8.5 75 97-179 19-95 (97)
325 2yh0_A Splicing factor U2AF 65 99.5 1.6E-14 5.4E-19 125.5 10.1 84 13-96 111-195 (198)
326 3egn_A RNA-binding protein 40; 99.5 2.1E-15 7.1E-20 125.2 4.2 84 11-95 40-130 (143)
327 1whx_A Hypothetical protein ri 99.5 5.4E-15 1.9E-19 117.5 6.0 76 99-180 9-85 (111)
328 3egn_A RNA-binding protein 40; 99.5 6.7E-15 2.3E-19 122.1 6.1 85 97-181 42-132 (143)
329 1fxl_A Paraneoplastic encephal 99.5 1.7E-14 5.7E-19 121.5 8.6 81 100-180 2-83 (167)
330 2j8a_A Histone-lysine N-methyl 99.5 1E-14 3.5E-19 117.3 6.8 77 101-177 3-94 (136)
331 2e44_A Insulin-like growth fac 99.5 1.1E-14 3.8E-19 112.2 6.9 80 98-181 13-94 (96)
332 1wg1_A KIAA1579 protein, homol 99.5 2E-14 6.8E-19 109.2 8.1 75 99-180 4-79 (88)
333 1b7f_A Protein (SXL-lethal pro 99.5 4.4E-14 1.5E-18 119.3 10.8 82 11-92 84-168 (168)
334 1sjr_A Polypyrimidine tract-bi 99.5 2.4E-14 8.4E-19 120.9 8.9 81 11-95 41-124 (164)
335 2cq2_A Hypothetical protein LO 99.5 1.9E-14 6.4E-19 114.6 7.4 76 11-92 20-103 (114)
336 1sjr_A Polypyrimidine tract-bi 99.5 3.5E-14 1.2E-18 119.9 9.3 78 100-181 46-126 (164)
337 3lqv_A PRE-mRNA branch site pr 99.5 1.4E-14 4.7E-19 115.6 6.5 81 98-181 6-87 (115)
338 2cq2_A Hypothetical protein LO 99.5 3.8E-14 1.3E-18 112.8 8.7 78 98-181 23-108 (114)
339 2bz2_A Negative elongation fac 99.5 5.5E-14 1.9E-18 113.5 8.2 78 11-96 34-112 (121)
340 2e5i_A Heterogeneous nuclear r 99.5 1.9E-13 6.4E-18 110.6 10.7 73 17-95 26-102 (124)
341 3nmr_A Cugbp ELAV-like family 99.5 9.4E-14 3.2E-18 117.9 9.5 79 13-92 92-174 (175)
342 2pe8_A Splicing factor 45; RRM 99.5 2E-13 6.9E-18 107.4 9.8 82 13-94 5-93 (105)
343 3zzy_A Polypyrimidine tract-bi 99.5 8.6E-14 2.9E-18 113.3 7.7 77 100-181 28-108 (130)
344 3zzy_A Polypyrimidine tract-bi 99.5 1.5E-13 5E-18 111.9 8.6 79 12-95 24-106 (130)
345 2hzc_A Splicing factor U2AF 65 99.5 1.5E-13 5E-18 103.7 7.9 70 99-175 5-86 (87)
346 2diu_A KIAA0430 protein; struc 99.5 2.1E-13 7.3E-18 103.7 8.7 75 13-97 5-86 (96)
347 3u1l_A PRE-mRNA-splicing facto 99.4 1.8E-13 6.2E-18 122.9 8.4 81 11-97 129-231 (240)
348 3tyt_A Heterogeneous nuclear r 99.4 1.8E-13 6.2E-18 120.6 7.8 77 99-180 3-81 (205)
349 2bz2_A Negative elongation fac 99.4 1.6E-13 5.6E-18 110.7 6.6 76 98-181 37-113 (121)
350 1fje_B Nucleolin RBD12, protei 99.4 2.2E-13 7.6E-18 116.0 7.9 80 11-95 94-174 (175)
351 2diu_A KIAA0430 protein; struc 99.4 1.8E-13 6.2E-18 104.1 6.1 72 101-182 10-87 (96)
352 3u1l_A PRE-mRNA-splicing facto 99.4 2E-13 7E-18 122.5 7.1 106 71-182 100-232 (240)
353 2e5i_A Heterogeneous nuclear r 99.4 2.4E-13 8.3E-18 109.9 6.7 75 101-181 26-104 (124)
354 2pe8_A Splicing factor 45; RRM 99.4 5.2E-13 1.8E-17 105.0 8.2 82 98-179 6-94 (105)
355 3pgw_A U1-A; protein-RNA compl 99.4 7.1E-13 2.4E-17 121.8 9.6 82 97-181 6-92 (282)
356 2d9o_A DNAJ (HSP40) homolog, s 99.4 4E-12 1.4E-16 98.9 11.1 78 13-96 7-91 (100)
357 2dit_A HIV TAT specific factor 99.3 3.8E-12 1.3E-16 101.1 9.8 81 98-182 13-105 (112)
358 2dit_A HIV TAT specific factor 99.3 5.5E-12 1.9E-16 100.1 10.4 82 11-96 10-103 (112)
359 3sde_A Paraspeckle component 1 99.3 3.3E-12 1.1E-16 116.4 9.5 81 14-95 94-179 (261)
360 2adc_A Polypyrimidine tract-bi 99.3 1.3E-12 4.5E-17 116.7 6.7 80 97-181 31-112 (229)
361 2d9o_A DNAJ (HSP40) homolog, s 99.3 6.4E-12 2.2E-16 97.8 9.1 67 110-182 27-93 (100)
362 1jmt_A Splicing factor U2AF 35 99.3 1.3E-12 4.5E-17 102.5 5.2 71 21-92 20-103 (104)
363 1qm9_A Polypyrimidine tract-bi 99.3 6.1E-12 2.1E-16 109.3 9.9 76 14-94 118-196 (198)
364 3v4m_A Splicing factor U2AF 65 99.3 6.3E-12 2.1E-16 98.8 7.6 81 14-94 3-96 (105)
365 3v4m_A Splicing factor U2AF 65 99.3 8.4E-12 2.9E-16 98.0 7.4 81 99-179 4-97 (105)
366 3ue2_A Poly(U)-binding-splicin 99.3 1.2E-11 4E-16 99.2 8.0 79 15-93 19-107 (118)
367 1jmt_A Splicing factor U2AF 35 99.2 2.1E-12 7.2E-17 101.3 3.0 71 105-176 20-103 (104)
368 3tht_A Alkylated DNA repair pr 99.2 3.5E-11 1.2E-15 113.6 8.8 62 10-77 12-75 (345)
369 3ue2_A Poly(U)-binding-splicin 99.2 2.1E-11 7.1E-16 97.8 5.9 81 99-179 19-109 (118)
370 3tht_A Alkylated DNA repair pr 99.1 1.2E-10 4.3E-15 109.7 8.5 75 97-177 15-97 (345)
371 3s6e_A RNA-binding protein 39; 99.0 1E-09 3.5E-14 87.3 8.4 77 13-93 4-91 (114)
372 3s6e_A RNA-binding protein 39; 99.0 6E-10 2E-14 88.7 5.4 76 100-179 7-93 (114)
373 1owx_A Lupus LA protein, SS-B, 98.9 1.2E-09 4.1E-14 87.4 6.9 75 97-177 15-94 (121)
374 1owx_A Lupus LA protein, SS-B, 98.9 2.7E-09 9.4E-14 85.3 7.8 74 11-90 13-91 (121)
375 2dnr_A Synaptojanin-1; RRM dom 98.8 9.3E-09 3.2E-13 77.4 6.1 72 15-94 6-85 (91)
376 2dnr_A Synaptojanin-1; RRM dom 98.8 2.1E-08 7.2E-13 75.5 8.1 77 97-181 4-88 (91)
377 1ufw_A Synaptojanin 2; RNP dom 98.6 3.4E-08 1.2E-12 74.8 5.1 71 15-93 14-93 (95)
378 1ufw_A Synaptojanin 2; RNP dom 98.5 6.5E-08 2.2E-12 73.2 4.7 73 97-177 12-93 (95)
379 3dxb_A Thioredoxin N-terminall 98.5 1.9E-07 6.6E-12 82.5 8.1 66 28-93 141-211 (222)
380 3dxb_A Thioredoxin N-terminall 98.5 1.2E-07 4E-12 83.9 5.3 68 112-179 141-213 (222)
381 2dhx_A Poly (ADP-ribose) polym 98.4 1.7E-06 5.7E-11 66.3 9.8 91 12-113 4-99 (104)
382 2l9w_A U4/U6 snRNA-associated- 98.1 7.9E-06 2.7E-10 63.1 8.0 75 11-91 16-96 (117)
383 2l9w_A U4/U6 snRNA-associated- 98.1 1E-05 3.6E-10 62.4 7.8 72 99-176 20-97 (117)
384 2dhx_A Poly (ADP-ribose) polym 97.8 5.5E-05 1.9E-09 57.9 7.6 75 99-181 7-86 (104)
385 1whv_A Poly(A)-specific ribonu 97.6 0.00043 1.5E-08 52.3 8.9 59 10-77 10-68 (100)
386 1wwh_A Nucleoporin 35, nucleop 97.2 0.001 3.5E-08 52.4 7.5 74 11-91 19-93 (119)
387 1wey_A Calcipressin 1; structu 96.9 0.002 7E-08 49.3 6.2 75 99-179 4-84 (104)
388 3ctr_A Poly(A)-specific ribonu 96.8 0.0015 5.2E-08 49.5 4.9 52 17-77 7-58 (101)
389 1uw4_A UPF3X; nonsense mediate 96.7 0.0056 1.9E-07 46.0 7.2 61 17-77 2-64 (91)
390 1wey_A Calcipressin 1; structu 96.6 0.0082 2.8E-07 46.0 7.6 74 14-93 3-82 (104)
391 1wwh_A Nucleoporin 35, nucleop 96.4 0.011 3.9E-07 46.4 7.8 72 99-177 23-95 (119)
392 3pq1_A Poly(A) RNA polymerase; 96.3 0.0027 9.2E-08 61.8 4.1 58 15-78 52-109 (464)
393 1whv_A Poly(A)-specific ribonu 96.2 0.0097 3.3E-07 44.9 6.0 55 99-162 15-69 (100)
394 1uw4_A UPF3X; nonsense mediate 95.5 0.017 5.9E-07 43.3 4.7 63 101-163 2-66 (91)
395 3p3d_A Nucleoporin 53; structu 95.2 0.021 7.2E-07 45.6 4.6 78 14-92 5-96 (132)
396 3p3d_A Nucleoporin 53; structu 95.2 0.083 2.8E-06 42.1 8.0 78 100-178 7-98 (132)
397 2l08_A Regulator of nonsense t 94.8 0.031 1.1E-06 42.2 4.4 63 15-77 8-72 (97)
398 3ctr_A Poly(A)-specific ribonu 94.6 0.012 4.3E-07 44.4 1.8 53 101-162 7-59 (101)
399 2l08_A Regulator of nonsense t 94.3 0.057 1.9E-06 40.8 4.7 64 100-163 9-74 (97)
400 3pq1_A Poly(A) RNA polymerase; 94.1 0.023 7.7E-07 55.3 2.9 58 99-162 52-109 (464)
401 3d45_A Poly(A)-specific ribonu 90.1 0.67 2.3E-05 45.6 7.7 55 14-77 438-492 (507)
402 3d45_A Poly(A)-specific ribonu 72.4 6.3 0.00022 38.6 6.6 54 100-162 440-493 (507)
403 4eyt_A Telomerase associated p 49.4 50 0.0017 24.1 6.1 70 98-175 10-87 (129)
404 3lpe_A Putative transcription 39.5 1.1E+02 0.0036 22.2 8.0 30 43-77 40-69 (92)
405 2g0c_A ATP-dependent RNA helic 34.4 98 0.0034 21.1 5.8 66 18-92 2-74 (76)
406 3fry_A Probable copper-exporti 29.5 1.2E+02 0.0042 19.9 6.7 57 16-79 6-62 (73)
407 4e8u_A Putative uncharacterize 28.5 51 0.0018 27.2 3.8 47 19-68 15-72 (172)
408 2lfv_A Protein DAMX; cell divi 31.0 15 0.00052 27.8 0.0 54 112-167 34-89 (106)
409 4eyt_A Telomerase associated p 24.6 2E+02 0.007 20.8 7.6 58 12-77 8-65 (129)
410 2pk2_A Cyclin-T1, protein TAT; 23.2 17 0.00059 33.7 0.0 13 111-123 228-240 (358)
411 3e6i_A CYPIIE1, P450-J, cytoch 20.9 91 0.0031 28.9 4.6 58 18-84 18-78 (476)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.9e-36 Score=264.72 Aligned_cols=176 Identities=33% Similarity=0.616 Sum_probs=155.6
Q ss_pred CCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecC
Q psy1757 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKID 88 (348)
Q Consensus 9 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~ 88 (348)
...+..+.++|||+|||.++|+++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|++||+.++..+.|+.|.
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~ 85 (196)
T 1l3k_A 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVE 85 (196)
T ss_dssp --CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEee
Confidence 44566788999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred ccccccccc-------CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHc
Q psy1757 89 PKRVTKRVN-------PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161 (348)
Q Consensus 89 v~~a~~~~~-------~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~ 161 (348)
+.++..... ...++|||+|||.++++++|+++|++||.|+.|+|+.+..++.++|||||+|.+.++|++|++.
T Consensus 86 v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 86 PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp EEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred eecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 998765432 2348999999999999999999999999999999999998999999999999999999999998
Q ss_pred CCCeeCCeEEEEEEcccCCCCCC
Q psy1757 162 PKQVICGKEVDVKRVKFNPETMG 184 (348)
Q Consensus 162 ~~~~i~G~~i~v~~a~~~~~~~~ 184 (348)
++..|+|+.|.|.++.++.....
T Consensus 166 ~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 166 KYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp SCCEETTEECEEEECC-------
T ss_pred CCcEECCEEEEEEecCChhHhcc
Confidence 88999999999999999877543
No 2
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=6.6e-35 Score=248.54 Aligned_cols=165 Identities=33% Similarity=0.686 Sum_probs=152.7
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCcccccc
Q psy1757 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVTK 94 (348)
Q Consensus 15 ~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~a~~ 94 (348)
++++|||+|||.++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+. .+.+.|+.|.+.++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 678999999999999999999999999999999999998999999999999999999999995 5789999999998765
Q ss_pred ccc-CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEE
Q psy1757 95 RVN-PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDV 173 (348)
Q Consensus 95 ~~~-~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v 173 (348)
+.. ...++|||+|||.++++++|+++|++||.|+.++++.++.++.++|+|||+|.+.++|++|++..+..++|++|.|
T Consensus 81 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V 160 (167)
T 2cjk_A 81 RDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEI 160 (167)
T ss_dssp HHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEE
T ss_pred hhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEE
Confidence 433 3467999999999999999999999999999999999998999999999999999999999995458899999999
Q ss_pred EEcccCC
Q psy1757 174 KRVKFNP 180 (348)
Q Consensus 174 ~~a~~~~ 180 (348)
.++.+++
T Consensus 161 ~~a~pk~ 167 (167)
T 2cjk_A 161 KRAEPRH 167 (167)
T ss_dssp EECCCCC
T ss_pred eecCCCC
Confidence 9998763
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2e-34 Score=256.67 Aligned_cols=167 Identities=25% Similarity=0.382 Sum_probs=149.2
Q ss_pred CCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCccc
Q psy1757 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDPKR 91 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v~~ 91 (348)
....++|||+|||+++|+++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+. +...+.++.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 45678999999999999999999999999999999999999999999999999999999999985 66789999999887
Q ss_pred cccccc---CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeC
Q psy1757 92 VTKRVN---PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVIC 167 (348)
Q Consensus 92 a~~~~~---~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~ 167 (348)
+..... ...++|||+||++++++++|+++|++||.|+.|+|+++. +.++|||||+|.+.++|++||+.+ +..|+
T Consensus 92 ~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~ 169 (213)
T 4f02_A 92 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLN 169 (213)
T ss_dssp CCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred ccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 754432 245789999999999999999999999999999999875 457999999999999999999987 48999
Q ss_pred CeEEEEEEcccCCC
Q psy1757 168 GKEVDVKRVKFNPE 181 (348)
Q Consensus 168 G~~i~v~~a~~~~~ 181 (348)
|++|.|.+++++.+
T Consensus 170 g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 170 DRKVFVGRFKSRKE 183 (213)
T ss_dssp TEECEEEECCCHHH
T ss_pred CEEEEEEEcCCCcc
Confidence 99999999987643
No 4
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=2.5e-33 Score=248.66 Aligned_cols=169 Identities=21% Similarity=0.406 Sum_probs=152.7
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCcccc
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKRV 92 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~a 92 (348)
.+.++|||+|||.++|+++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++||+ +++..+.++.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 346899999999999999999999999999999999998899999999999999999999999 6778999999999887
Q ss_pred cccc------------cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHH
Q psy1757 93 TKRV------------NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK 160 (348)
Q Consensus 93 ~~~~------------~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~ 160 (348)
.... ....++|||+|||.++++++|+++|++||.|+.|+|+.+..+++++|+|||+|.+.++|.+|++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 6543 2345899999999999999999999999999999999998899999999999999999999999
Q ss_pred cC-CCeeCCeEEEEEEcccCCCC
Q psy1757 161 NP-KQVICGKEVDVKRVKFNPET 182 (348)
Q Consensus 161 ~~-~~~i~G~~i~v~~a~~~~~~ 182 (348)
.+ +..|+|+.|.|.++.++...
T Consensus 186 ~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 186 SMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HHTTCBCSSSBCEEEECSSCSST
T ss_pred HccCCEeCCcEEEEEEecCCCCC
Confidence 87 48899999999999987653
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-33 Score=237.08 Aligned_cols=160 Identities=22% Similarity=0.396 Sum_probs=147.9
Q ss_pred CEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCccccccc
Q psy1757 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKRVTKR 95 (348)
Q Consensus 17 ~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~a~~~ 95 (348)
|+|||+|||.++|+++|+++|++||+|.+|+|++++ ++.++|||||+|.+.++|++|++ +++..+.++.|.+.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 689999999999999999999999999999999987 67899999999999999999994 6788999999999988655
Q ss_pred c---cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEE
Q psy1757 96 V---NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEV 171 (348)
Q Consensus 96 ~---~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i 171 (348)
. ....++|||+|||..+++++|+++|++||.|+.++++.+..++.++|+|||+|.+.++|.+|++.+ +..++|++|
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 159 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 159 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Confidence 3 344689999999999999999999999999999999999889999999999999999999999977 589999999
Q ss_pred EEEEcc
Q psy1757 172 DVKRVK 177 (348)
Q Consensus 172 ~v~~a~ 177 (348)
.|.+++
T Consensus 160 ~v~~a~ 165 (166)
T 3md3_A 160 RINWAA 165 (166)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 999986
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=2.8e-33 Score=238.47 Aligned_cols=162 Identities=21% Similarity=0.365 Sum_probs=150.8
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCccccc
Q psy1757 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKRVT 93 (348)
Q Consensus 15 ~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~a~ 93 (348)
.+++|||+|||.++|+++|+++|++||+|.+|+|++++.++.++|||||+|.+.++|++|++ +++..+.++.|.+.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 57899999999999999999999999999999999998899999999999999999999997 67789999999999987
Q ss_pred cccc-CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCC--e
Q psy1757 94 KRVN-PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICG--K 169 (348)
Q Consensus 94 ~~~~-~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G--~ 169 (348)
.... ...++|||+|||..+++++|+++|++||.|+.++++.+..++.++|+|||+|.+.++|.+|++.++ ..+.| +
T Consensus 82 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~ 161 (168)
T 1b7f_A 82 PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQ 161 (168)
T ss_dssp CCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSS
T ss_pred CCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCe
Confidence 6543 356899999999999999999999999999999999998889999999999999999999999874 78877 9
Q ss_pred EEEEEEc
Q psy1757 170 EVDVKRV 176 (348)
Q Consensus 170 ~i~v~~a 176 (348)
+|+|++|
T Consensus 162 ~l~V~~A 168 (168)
T 1b7f_A 162 PLSVRLA 168 (168)
T ss_dssp CCEEEEC
T ss_pred EEEEEeC
Confidence 9999875
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=7.1e-33 Score=235.31 Aligned_cols=162 Identities=27% Similarity=0.446 Sum_probs=149.2
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCccccc
Q psy1757 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKRVT 93 (348)
Q Consensus 15 ~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~a~ 93 (348)
.+++|||+|||.++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|++ +++..+.++.|.+.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 36899999999999999999999999999999999999899999999999999999999998 57789999999999887
Q ss_pred cccc-CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeE-
Q psy1757 94 KRVN-PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKE- 170 (348)
Q Consensus 94 ~~~~-~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~- 170 (348)
+... ...++|||+|||.++++++|+++|++||.|+.++++.+..++.++|+|||+|.+.++|.+|++.++ ..+.|+.
T Consensus 81 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~ 160 (167)
T 1fxl_A 81 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATE 160 (167)
T ss_dssp CCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSS
T ss_pred CCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCcc
Confidence 5543 356889999999999999999999999999999999998899999999999999999999999874 8899865
Q ss_pred -EEEEEc
Q psy1757 171 -VDVKRV 176 (348)
Q Consensus 171 -i~v~~a 176 (348)
|.|+||
T Consensus 161 ~i~v~~A 167 (167)
T 1fxl_A 161 PITVKFA 167 (167)
T ss_dssp CCEEEEC
T ss_pred ceEEEeC
Confidence 888775
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.98 E-value=7.8e-32 Score=230.80 Aligned_cols=163 Identities=29% Similarity=0.442 Sum_probs=140.9
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCC--CcceEEEEEecCHHHHHHHHHh-CCcccC---Ceec
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTG--QSRGFAFVTYTTQKAVDDLLAA-GDHYIG---NKKI 87 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg--~~kG~aFV~F~~~e~A~~Al~~-~~~~~~---gr~i 87 (348)
.++++|||+|||.++|+++|+++|++||+|.+|+|++++.++ +++|||||+|.+.++|++|++. ++..+. ++.+
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 367999999999999999999999999999999999998776 8999999999999999999984 444443 4555
Q ss_pred Cccccccccc--CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-C
Q psy1757 88 DPKRVTKRVN--PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-Q 164 (348)
Q Consensus 88 ~v~~a~~~~~--~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~ 164 (348)
.+.++..... ...++|||+|||.++++++|+++|++||.|+.|+++.+. ++.++|+|||+|.+.++|++|++.++ .
T Consensus 81 ~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~ 159 (175)
T 3nmr_A 81 QMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQA 159 (175)
T ss_dssp EEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTS
T ss_pred EEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCC
Confidence 5555544332 256899999999999999999999999999999998886 58899999999999999999999885 5
Q ss_pred eeC---CeEEEEEEcc
Q psy1757 165 VIC---GKEVDVKRVK 177 (348)
Q Consensus 165 ~i~---G~~i~v~~a~ 177 (348)
.+. +++|.|+++.
T Consensus 160 ~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 160 QTMEGCSSPMVVKFAD 175 (175)
T ss_dssp CCCTTCSSCCEEEECC
T ss_pred cccCCCCCCeEEEecC
Confidence 554 4999999874
No 9
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=4.9e-32 Score=232.81 Aligned_cols=165 Identities=19% Similarity=0.295 Sum_probs=145.4
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCc
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDP 89 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v 89 (348)
..+..+.++|||+|||.++|+++|+++|++||.|..+ ++.+..++.++|||||+|.+.++|++||++++..+.|+.|.+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v 85 (175)
T 1fje_B 7 GSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 85 (175)
T ss_dssp SSSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEE
Confidence 4567789999999999999999999999999987763 344456888999999999999999999988888999999999
Q ss_pred cccccccc---CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-Ce
Q psy1757 90 KRVTKRVN---PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QV 165 (348)
Q Consensus 90 ~~a~~~~~---~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~ 165 (348)
.++..+.. ...++|||+|||.++++++|+++|++||.|..+ ..++.++|+|||+|.+.++|.+|++.++ ..
T Consensus 86 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 1fje_B 86 EKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAE 160 (175)
T ss_dssp ECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEE
T ss_pred ecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCE
Confidence 99876543 346899999999999999999999999988776 4467889999999999999999999875 89
Q ss_pred eCCeEEEEEEcccCC
Q psy1757 166 ICGKEVDVKRVKFNP 180 (348)
Q Consensus 166 i~G~~i~v~~a~~~~ 180 (348)
|+|+.|.|+++++++
T Consensus 161 ~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 161 IDGRSVSLYYTGEKG 175 (175)
T ss_dssp ETTEEEEEEECSSCC
T ss_pred ECCeEEEEEecCCCC
Confidence 999999999998763
No 10
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=3.8e-31 Score=226.30 Aligned_cols=158 Identities=23% Similarity=0.482 Sum_probs=143.1
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcC----C-------CeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCccc
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQY----G-------EVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYI 82 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~----G-------~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~ 82 (348)
.++++|||+|||.++|+++|+++|++| | .|.++++.++ +|||||+|.+.++|++||++++..+
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~~~~~~~~ 75 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIF 75 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHHHhCCcEe
Confidence 367999999999999999999999999 6 7777777653 6899999999999999997788899
Q ss_pred CCeecCccccccccc-CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHc
Q psy1757 83 GNKKIDPKRVTKRVN-PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161 (348)
Q Consensus 83 ~gr~i~v~~a~~~~~-~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~ 161 (348)
.|+.|.+.++..... ...++|||+|||.++++++|+++|++||.|+.++++.+..++.++|+|||+|.+.++|++|++.
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 155 (172)
T ss_dssp TTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHH
T ss_pred cCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 999999998765533 3468999999999999999999999999999999999988999999999999999999999998
Q ss_pred C-CCeeCCeEEEEEEcc
Q psy1757 162 P-KQVICGKEVDVKRVK 177 (348)
Q Consensus 162 ~-~~~i~G~~i~v~~a~ 177 (348)
+ +..++|++|.|+++.
T Consensus 156 l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 156 LNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HTTCEETTEECEEEECC
T ss_pred cCCCEECCeEEEEEeCC
Confidence 7 589999999999873
No 11
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=9.7e-31 Score=228.80 Aligned_cols=162 Identities=22% Similarity=0.449 Sum_probs=143.6
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcC----C-------CeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCccc
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQY----G-------EVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYI 82 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~----G-------~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~ 82 (348)
..+++|||+|||.++|+++|+++|++| | .|.++++. +++|||||+|.+.++|++||++++..+
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al~l~g~~~ 75 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFDGIIF 75 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHGGGTTEEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHHHhcCCEE
Confidence 467999999999999999999999999 5 56666554 456999999999999999997788899
Q ss_pred CCeecCccccccccc---------------------CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCcc
Q psy1757 83 GNKKIDPKRVTKRVN---------------------PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMK 141 (348)
Q Consensus 83 ~gr~i~v~~a~~~~~---------------------~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~ 141 (348)
.|+.|.+.++..... ...++|||+|||.++++++|+++|++||.|+.|+++.+..++.+
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS 155 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSE
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCc
Confidence 999999988765421 34589999999999999999999999999999999999889999
Q ss_pred ceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEEcccCCC
Q psy1757 142 KGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKRVKFNPE 181 (348)
Q Consensus 142 rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~a~~~~~ 181 (348)
+|||||+|.+.++|++|++.+ +..|+|+.|.|.+++++..
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999986 5899999999999988754
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=8.9e-30 Score=235.73 Aligned_cols=167 Identities=16% Similarity=0.217 Sum_probs=153.6
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCcccc
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKRV 92 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~a 92 (348)
...++|||+|||.++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+|++ +++..+.|+.|.+.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 356899999999999999999999999999999999999999999999999999999999995 6778999999999998
Q ss_pred ccccc----CCCceEEEcCCCCCC-CHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCee
Q psy1757 93 TKRVN----PLKCKIFVGGLTTEI-TEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVI 166 (348)
Q Consensus 93 ~~~~~----~~~~~l~V~nLp~~~-te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i 166 (348)
..... ...++|||+|||.++ ++++|+++|++||.|+.|+|+.+. ++.++|+|||+|.+.++|.+|++.+ +..|
T Consensus 173 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 251 (284)
T 3smz_A 173 DAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSL 251 (284)
T ss_dssp CGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 76643 345889999999995 999999999999999999998876 6889999999999999999999987 4899
Q ss_pred CCeEEEEEEcccCCC
Q psy1757 167 CGKEVDVKRVKFNPE 181 (348)
Q Consensus 167 ~G~~i~v~~a~~~~~ 181 (348)
+|++|.|.+++++..
T Consensus 252 ~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 252 GGSHLRVSFCAPGPP 266 (284)
T ss_dssp TTEECEEEECCSSSC
T ss_pred CCeEEEEEEecCCCc
Confidence 999999999988765
No 13
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=1.1e-29 Score=234.99 Aligned_cols=160 Identities=18% Similarity=0.314 Sum_probs=141.6
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHH----HHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCC
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEIN----DYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGN 84 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~g 84 (348)
..+...+++|||+|||.++|+++|+ ++|++||.|.+|+|++ ++++||||||+|.+.++|++||+ +++..+.|
T Consensus 3 ~~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (282)
T 3pgw_A 3 VPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD 79 (282)
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCC
Confidence 3456779999999999999999976 8999999999999876 77899999999999999999996 56788999
Q ss_pred eecCccccccccc-------------------------------------------------------------------
Q psy1757 85 KKIDPKRVTKRVN------------------------------------------------------------------- 97 (348)
Q Consensus 85 r~i~v~~a~~~~~------------------------------------------------------------------- 97 (348)
+.|.|.++.....
T Consensus 80 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (282)
T 3pgw_A 80 KPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPG 159 (282)
T ss_pred cEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCC
Confidence 9999987754321
Q ss_pred ---------------------------------------------CCCceEEEcCCCCCCCHHHHHHHHhhcCCcccccc
Q psy1757 98 ---------------------------------------------PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQ 132 (348)
Q Consensus 98 ---------------------------------------------~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i 132 (348)
...++|||+||+..+++++|+++|++||.|++|+|
T Consensus 160 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~ 239 (282)
T 3pgw_A 160 QPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRL 239 (282)
T ss_pred CCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEE
Confidence 13477999999999999999999999999999999
Q ss_pred CCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeC-CeEEEEEEcc
Q psy1757 133 PFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVIC-GKEVDVKRVK 177 (348)
Q Consensus 133 ~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~-G~~i~v~~a~ 177 (348)
+.++ +|+|||+|.+.++|++|++.++ ..|. |+.|+|.|++
T Consensus 240 ~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 240 VPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred ecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 8654 5899999999999999999885 7888 9999999986
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=8.2e-30 Score=225.80 Aligned_cols=155 Identities=17% Similarity=0.204 Sum_probs=133.8
Q ss_pred CCCEEEEcCCC-CcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCcccc
Q psy1757 15 DERKLFVGGLH-RNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKRV 92 (348)
Q Consensus 15 ~~~~lfVgnLp-~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~a 92 (348)
++++|||+||| .++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|++||+ +++..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 89999999999999999999999875 36999999999999999998 6778999999999876
Q ss_pred cccc--------------------------------------cCCCceEEEcCCCCCCCHHHHHHHHhhcCCc--ccccc
Q psy1757 93 TKRV--------------------------------------NPLKCKIFVGGLTTEITEQDVRDYFSQYGSI--TEFQQ 132 (348)
Q Consensus 93 ~~~~--------------------------------------~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i--~~v~i 132 (348)
..+. .+..++|||+|||+++|+++|+++|++||.| +.+++
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 4211 0123579999999999999999999999999 88988
Q ss_pred CCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCe----EEEEEEc
Q psy1757 133 PFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGK----EVDVKRV 176 (348)
Q Consensus 133 ~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~----~i~v~~a 176 (348)
+.++ +.++|+|||+|.+.++|.+||+.++ ..|.|+ ++.|+++
T Consensus 158 ~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 158 FSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8775 4567999999999999999999985 778776 5666654
No 15
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=1.9e-29 Score=234.39 Aligned_cols=165 Identities=19% Similarity=0.308 Sum_probs=143.0
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcCC-CeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCccc
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQYG-EVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKR 91 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~G-~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~ 91 (348)
...++|||+|||.++|+++|+++|++|| .|.+|+|+.++ .+.++|||||+|.+.++|++|++ +++..+.|+.|.|.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3578999999999999999999999999 99999999887 48899999999999999999999 788899999999998
Q ss_pred cccccc--------CCCceEEEcCCCCC-CCHHHHHHHHhhcCCccccccCCCCC-CCccceEEEEEECCHHHHHHHHHc
Q psy1757 92 VTKRVN--------PLKCKIFVGGLTTE-ITEQDVRDYFSQYGSITEFQQPFDKS-KNMKKGFCFISFDDQNVADQVLKN 161 (348)
Q Consensus 92 a~~~~~--------~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~-~g~~rG~aFV~F~~~e~A~~Al~~ 161 (348)
+.+... ...++|||+|||.. +++++|+++|++||.|+.|+|+.+.. ++.++|||||+|.+.++|.+|+ .
T Consensus 194 a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~ 272 (292)
T 2ghp_A 194 SNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-Q 272 (292)
T ss_dssp CCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-G
T ss_pred CCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-H
Confidence 765432 23589999999999 99999999999999999999999876 5889999999999999999999 7
Q ss_pred C-CCeeCCeEEEEEEcccCC
Q psy1757 162 P-KQVICGKEVDVKRVKFNP 180 (348)
Q Consensus 162 ~-~~~i~G~~i~v~~a~~~~ 180 (348)
+ +..|.|+.|.|.++++++
T Consensus 273 l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 273 MNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp GTTEEETTEEEEEEECCCCC
T ss_pred hcCCEECCcEEEEEEecCCC
Confidence 6 588999999999998864
No 16
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=3e-29 Score=233.04 Aligned_cols=163 Identities=13% Similarity=0.249 Sum_probs=138.2
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCc
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDP 89 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v 89 (348)
.....+.++|||+|||.++|+++|+++|++||+|.+|+|++++.+ ++|||||+|.+.++|++||++++..+.++.|.+
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v 112 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIV 112 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEE
Confidence 344567899999999999999999999999999999999998633 589999999999999999988888999999999
Q ss_pred ccccccccCCCceEEEcCCCCCCCHHHHHHHHhhcC-CccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeC
Q psy1757 90 KRVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYG-SITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVIC 167 (348)
Q Consensus 90 ~~a~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~ 167 (348)
.++ ..++|||+|||..+++++|+++|++|| .|..|+++.+.. +.++|||||+|.+.++|.+|++.+ +..+.
T Consensus 113 ~~~------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 185 (292)
T 2ghp_A 113 SHL------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIE 185 (292)
T ss_dssp EEC------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred EEC------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 876 468999999999999999999999999 999999998876 778999999999999999999976 58999
Q ss_pred CeEEEEEEcccCCC
Q psy1757 168 GKEVDVKRVKFNPE 181 (348)
Q Consensus 168 G~~i~v~~a~~~~~ 181 (348)
|+.|.|.++.+...
T Consensus 186 g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 186 GYTLVTKVSNPLEK 199 (292)
T ss_dssp TEECEEEECCCC--
T ss_pred CcEEEEEECCCCcc
Confidence 99999999987654
No 17
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=3.1e-29 Score=225.51 Aligned_cols=159 Identities=16% Similarity=0.234 Sum_probs=140.8
Q ss_pred CCCCCCCEEEEcCCCC-cccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecC
Q psy1757 11 PGRNDERKLFVGGLHR-NTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKID 88 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~ 88 (348)
....++++|||+|||. ++|+++|+++|++||.|.+|+|++++ +|||||+|.+.++|++||+ +++..+.|+.|.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 4456789999999999 99999999999999999999999875 6899999999999999997 678899999999
Q ss_pred cccccccc------------------------------------cCCCceEEEcCCCCCCCHHHHHHHHhhcC-Cccccc
Q psy1757 89 PKRVTKRV------------------------------------NPLKCKIFVGGLTTEITEQDVRDYFSQYG-SITEFQ 131 (348)
Q Consensus 89 v~~a~~~~------------------------------------~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~ 131 (348)
|.++.... .+..++|||+|||..+++++|+++|++|| .|+.|+
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~ 183 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK 183 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEE
Confidence 98775431 12257899999999999999999999999 999999
Q ss_pred cCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeC-CeEEEEEEcccC
Q psy1757 132 QPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVIC-GKEVDVKRVKFN 179 (348)
Q Consensus 132 i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~-G~~i~v~~a~~~ 179 (348)
++.+ .+|+|||+|.+.++|++|++.+ +..+. |++|.|.+++++
T Consensus 184 i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 184 FFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp ECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 8653 3679999999999999999987 48888 999999998864
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=7.4e-29 Score=227.45 Aligned_cols=160 Identities=20% Similarity=0.347 Sum_probs=143.8
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecC
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKID 88 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~ 88 (348)
.....+.++|||+|||.++|+++|+++|++||.|.+|.|.++ +|||||+|.+.++|++||+ .++..+.++.|.
T Consensus 16 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 89 (261)
T 3sde_A 16 EKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLR 89 (261)
T ss_dssp CCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeE
Confidence 344566789999999999999999999999999999999764 5899999999999999998 677899999999
Q ss_pred cccccccccCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-C-Cee
Q psy1757 89 PKRVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-K-QVI 166 (348)
Q Consensus 89 v~~a~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~-~~i 166 (348)
|.++.. .++|||+|||..+|+++|+++|++||.|+.|+|+.+ .+++++|||||+|.+.++|.+|++.+ + ..+
T Consensus 90 v~~a~~-----~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 163 (261)
T 3sde_A 90 IRFATH-----GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFL 163 (261)
T ss_dssp EEECCC-----SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEE
T ss_pred eeeccc-----CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEE
Confidence 998753 578999999999999999999999999999999998 58899999999999999999999998 3 344
Q ss_pred C---CeEEEEEEcccCCC
Q psy1757 167 C---GKEVDVKRVKFNPE 181 (348)
Q Consensus 167 ~---G~~i~v~~a~~~~~ 181 (348)
. +++|.|.++.....
T Consensus 164 ~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 164 LTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp SSSSCCBCEEEECCCEES
T ss_pred ecCCCceEEEeeccccCc
Confidence 4 99999999987654
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=4e-29 Score=219.14 Aligned_cols=155 Identities=17% Similarity=0.247 Sum_probs=138.0
Q ss_pred CCCEEEEcCCCC-cccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCcccc
Q psy1757 15 DERKLFVGGLHR-NTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKRV 92 (348)
Q Consensus 15 ~~~~lfVgnLp~-~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~a 92 (348)
++++|||+|||. ++|+++|+++|++||.|.+|+|++++ +|||||+|.+.++|++||+ +++..+.|+.|.+.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 468999999999 99999999999999999999998875 6899999999999999998 6788999999999877
Q ss_pred cccc------------------------------------cCCCceEEEcCCCCCCCHHHHHHHHhhcC-CccccccCCC
Q psy1757 93 TKRV------------------------------------NPLKCKIFVGGLTTEITEQDVRDYFSQYG-SITEFQQPFD 135 (348)
Q Consensus 93 ~~~~------------------------------------~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~ 135 (348)
.... .+..++|||+|||..+++++|+++|++|| .|+.|+++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 5331 12267899999999999999999999999 9999999764
Q ss_pred CCCCccceEEEEEECCHHHHHHHHHcCC-CeeC-CeEEEEEEcccC
Q psy1757 136 KSKNMKKGFCFISFDDQNVADQVLKNPK-QVIC-GKEVDVKRVKFN 179 (348)
Q Consensus 136 ~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~-G~~i~v~~a~~~ 179 (348)
. +|+|||+|.+.++|.+|++.++ ..+. |++|.|.+++++
T Consensus 157 ~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 D-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp T-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred C-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 2 6899999999999999999874 7888 999999998764
No 20
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=2.2e-28 Score=226.34 Aligned_cols=156 Identities=16% Similarity=0.323 Sum_probs=143.0
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCcccc
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKRV 92 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~a 92 (348)
..+++|||+|||.++|+++|+++|++|| |.+|.+ ++++|||||+|.+.++|++|++ +++..+.|+.|.+.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 4679999999999999999999999999 999988 3467899999999999999997 4778899999999875
Q ss_pred cccccCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEE
Q psy1757 93 TKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEV 171 (348)
Q Consensus 93 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i 171 (348)
+..++|||+|||.++++++|+++|++||.|..++++.+..++.++|+|||+|.+.++|.+|++.+ +..++|+.|
T Consensus 93 -----~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 167 (284)
T 3smz_A 93 -----PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTL 167 (284)
T ss_dssp -----CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred -----CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 35579999999999999999999999999999999999999999999999999999999999776 589999999
Q ss_pred EEEEcccCCC
Q psy1757 172 DVKRVKFNPE 181 (348)
Q Consensus 172 ~v~~a~~~~~ 181 (348)
.|.++.++..
T Consensus 168 ~v~~a~~~~~ 177 (284)
T 3smz_A 168 YVHWTDAGQL 177 (284)
T ss_dssp EEEECCGGGC
T ss_pred EEEECCCCCC
Confidence 9999987654
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.88 E-value=4.8e-22 Score=168.20 Aligned_cols=136 Identities=15% Similarity=0.236 Sum_probs=108.7
Q ss_pred EEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCC--cccCCeec------Cccc-------ccccccCCCceEEEcCCC
Q psy1757 45 SISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGD--HYIGNKKI------DPKR-------VTKRVNPLKCKIFVGGLT 109 (348)
Q Consensus 45 ~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~--~~~~gr~i------~v~~-------a~~~~~~~~~~l~V~nLp 109 (348)
++.|+.+. .+++||+||+|.+.++|++|++..+ ..+.+... .... .........++|||+|||
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 46677764 3689999999999999999997532 12222211 1111 011122346899999999
Q ss_pred CCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEcccCCCC
Q psy1757 110 TEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVKFNPET 182 (348)
Q Consensus 110 ~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~~~~~~ 182 (348)
+++++++|+++|++||.|+.|+|+.++.+++++|||||+|.+.++|++|++.++ ..|.|+.|.|.+++++...
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 999999999999999999999999999999999999999999999999999874 8899999999999987553
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=3e-21 Score=154.97 Aligned_cols=100 Identities=20% Similarity=0.397 Sum_probs=72.5
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCccccc
Q psy1757 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKRVT 93 (348)
Q Consensus 15 ~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~a~ 93 (348)
.+.+|||+|||+++|+++|+++|++||.|++|+|++++ +.+||||||+|.+.++|++||+ +++..++|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 46789999999999999999999999999999999985 4589999999999999999997 57889999999999876
Q ss_pred ccccC---------CCceEEEcCCCCCCCHHH
Q psy1757 94 KRVNP---------LKCKIFVGGLTTEITEQD 116 (348)
Q Consensus 94 ~~~~~---------~~~~l~V~nLp~~~te~~ 116 (348)
.+... ...+|||+|||+++|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC----------------------------
T ss_pred CccccccccccccCCCCceEeCCCCCCccccc
Confidence 54321 235799999999998864
No 23
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.81 E-value=5.5e-20 Score=180.12 Aligned_cols=83 Identities=22% Similarity=0.379 Sum_probs=78.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEcc
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVK 177 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~ 177 (348)
..++|||+||++.+|+++|+++|++||.|+.|.|+.+..++.++|||||+|.+.++|++||+.|+ ..|+|+.|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 45799999999999999999999999999999999999999999999999999999999999885 89999999999999
Q ss_pred cCCC
Q psy1757 178 FNPE 181 (348)
Q Consensus 178 ~~~~ 181 (348)
++..
T Consensus 181 ~~~~ 184 (437)
T 3pgw_S 181 GRTV 184 (437)
T ss_pred CCCC
Confidence 7654
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=141.23 Aligned_cols=81 Identities=28% Similarity=0.412 Sum_probs=76.0
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCcccc
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKRV 92 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~a 92 (348)
.+.++|||+|||.++|+++|+++|++||+|.+|+|++|+.+++++|||||+|.+.++|++||+ +++..+.|+.|.|+++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999999999999999999999999999997 5788999999999988
Q ss_pred cc
Q psy1757 93 TK 94 (348)
Q Consensus 93 ~~ 94 (348)
++
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 54
No 25
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.80 E-value=1.1e-19 Score=152.58 Aligned_cols=121 Identities=20% Similarity=0.379 Sum_probs=104.8
Q ss_pred CCCcceEEEEEecCHHHHHHHHHh--CCcccCCeecCccccccc-----------------ccCCCceEEEcCCCCCCCH
Q psy1757 54 TGQSRGFAFVTYTTQKAVDDLLAA--GDHYIGNKKIDPKRVTKR-----------------VNPLKCKIFVGGLTTEITE 114 (348)
Q Consensus 54 tg~~kG~aFV~F~~~e~A~~Al~~--~~~~~~gr~i~v~~a~~~-----------------~~~~~~~l~V~nLp~~~te 114 (348)
....+|+++|+|.+.++|++|++. ++..+.| .+.+.++..+ .....++|||+|||+++++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 346789999999999999999975 4568888 8888776542 1234589999999999999
Q ss_pred HHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEEcccCC
Q psy1757 115 QDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKRVKFNP 180 (348)
Q Consensus 115 ~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~a~~~~ 180 (348)
++|+++|++||.|++|+|+.+ ++|||||+|.+.++|++|++.+ +..|.|++|.|++++++.
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999999999999999876 5889999999999999999976 588999999999998763
No 26
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.2e-19 Score=137.67 Aligned_cols=89 Identities=33% Similarity=0.623 Sum_probs=82.5
Q ss_pred CCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecC
Q psy1757 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKID 88 (348)
Q Consensus 9 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~ 88 (348)
+.......++|||+|||.++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||++++..+.|+.|.
T Consensus 3 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~ 82 (99)
T 2dgs_A 3 SGSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVE 82 (99)
T ss_dssp CCCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEE
Confidence 45566788999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred ccccccccc
Q psy1757 89 PKRVTKRVN 97 (348)
Q Consensus 89 v~~a~~~~~ 97 (348)
|+++..+..
T Consensus 83 V~~a~~~~~ 91 (99)
T 2dgs_A 83 VKRAEPRDS 91 (99)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCcc
Confidence 999876643
No 27
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=1.8e-19 Score=140.77 Aligned_cols=82 Identities=17% Similarity=0.266 Sum_probs=76.9
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~ 175 (348)
....++|||+|||.++|+++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++|++.+ +..|.|++|.|++
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 334578999999999999999999999999999999999999999999999999999999999987 5899999999999
Q ss_pred ccc
Q psy1757 176 VKF 178 (348)
Q Consensus 176 a~~ 178 (348)
++|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 976
No 28
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.79 E-value=3.1e-19 Score=150.73 Aligned_cols=84 Identities=23% Similarity=0.406 Sum_probs=78.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEc
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRV 176 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a 176 (348)
...++|||+|||.++++++|+++|++||.|+.|+|+.++.++.++|||||+|.+.++|++||+.++ ..|+|++|.|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999999999999999999999999999999874 8999999999999
Q ss_pred ccCCC
Q psy1757 177 KFNPE 181 (348)
Q Consensus 177 ~~~~~ 181 (348)
++...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87654
No 29
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.79 E-value=3.6e-19 Score=135.14 Aligned_cols=84 Identities=40% Similarity=0.800 Sum_probs=77.0
Q ss_pred CCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecC
Q psy1757 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKID 88 (348)
Q Consensus 9 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~ 88 (348)
....+.+.++|||+|||.++|+++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++||+.+++.++|+.|.
T Consensus 4 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~ 83 (87)
T 3s7r_A 4 ASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVID 83 (87)
T ss_dssp ---CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEE
Confidence 34566788999999999999999999999999999999999999899999999999999999999999988899999998
Q ss_pred cccc
Q psy1757 89 PKRV 92 (348)
Q Consensus 89 v~~a 92 (348)
|+++
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8764
No 30
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-19 Score=139.49 Aligned_cols=82 Identities=20% Similarity=0.336 Sum_probs=75.5
Q ss_pred CCEEEEcCCCCcccHHHHHHHhhcCC-CeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhC-C-cccCCeecCcccc
Q psy1757 16 ERKLFVGGLHRNTGEKEINDYFSQYG-EVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG-D-HYIGNKKIDPKRV 92 (348)
Q Consensus 16 ~~~lfVgnLp~~~te~~L~~~F~~~G-~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~-~-~~~~gr~i~v~~a 92 (348)
+++|||+|||.++|+++|+++|++|| +|.+|+|++|+.|+.+||||||+|.+.++|++||+.+ + ..+.|+.|.|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 8999999999999999999999999999999999864 3 4799999999998
Q ss_pred ccccc
Q psy1757 93 TKRVN 97 (348)
Q Consensus 93 ~~~~~ 97 (348)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 76644
No 31
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=9.1e-19 Score=134.51 Aligned_cols=83 Identities=22% Similarity=0.337 Sum_probs=76.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcC-CccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-C-CeeCCeEEEEEEc
Q psy1757 100 KCKIFVGGLTTEITEQDVRDYFSQYG-SITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-K-QVICGKEVDVKRV 176 (348)
Q Consensus 100 ~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~-~~i~G~~i~v~~a 176 (348)
+++|||+|||.++|+++|+++|++|| .|++|+|++++.++.+||||||+|.+.++|++|++.+ + ..++|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 8999999999999999999999999999999999987 4 5799999999999
Q ss_pred ccCCCC
Q psy1757 177 KFNPET 182 (348)
Q Consensus 177 ~~~~~~ 182 (348)
++++..
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 887653
No 32
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=137.24 Aligned_cols=91 Identities=42% Similarity=0.675 Sum_probs=83.6
Q ss_pred CCCCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCee
Q psy1757 7 GTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKK 86 (348)
Q Consensus 7 ~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~ 86 (348)
........+.++|||+|||.++|+++|+++|++||+|.+|+|++++.++.++|||||+|.+.++|++||+.++..|.|+.
T Consensus 7 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 86 (105)
T 2dh8_A 7 GMNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRN 86 (105)
T ss_dssp CCCCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEE
T ss_pred CCCcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 34556677889999999999999999999999999999999999998999999999999999999999999778999999
Q ss_pred cCccccccccc
Q psy1757 87 IDPKRVTKRVN 97 (348)
Q Consensus 87 i~v~~a~~~~~ 97 (348)
|.|+++..+..
T Consensus 87 l~V~~a~~~~~ 97 (105)
T 2dh8_A 87 IDPKPCTPRGM 97 (105)
T ss_dssp EBCCCSCCSSC
T ss_pred EEEEEccCCCC
Confidence 99999876643
No 33
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.4e-18 Score=137.85 Aligned_cols=87 Identities=28% Similarity=0.545 Sum_probs=80.8
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEE
Q psy1757 96 VNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175 (348)
Q Consensus 96 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~ 175 (348)
.....++|||+|||+++++++|+++|++||.|+.|+|++++.+++++|||||+|.+.++|++||+.++..|+|+.|.|++
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 92 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNL 92 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999998799999999999
Q ss_pred cccCCCC
Q psy1757 176 VKFNPET 182 (348)
Q Consensus 176 a~~~~~~ 182 (348)
+..+...
T Consensus 93 a~~~~~~ 99 (116)
T 2cqd_A 93 AYLGAKP 99 (116)
T ss_dssp STTTCCC
T ss_pred cccCCCc
Confidence 9876543
No 34
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=139.11 Aligned_cols=82 Identities=22% Similarity=0.277 Sum_probs=76.5
Q ss_pred CCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCccc
Q psy1757 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKR 91 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~ 91 (348)
+.+.++|||+|||+++|+++|+++|++||.|++|+|++|+.|+++||||||+|++.++|++||+ +++..+.|+.|.|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3567899999999999999999999999999999999999999999999999999999999998 577899999999988
Q ss_pred ccc
Q psy1757 92 VTK 94 (348)
Q Consensus 92 a~~ 94 (348)
+..
T Consensus 83 a~~ 85 (110)
T 3s8s_A 83 DIK 85 (110)
T ss_dssp CST
T ss_pred CCC
Confidence 753
No 35
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-18 Score=138.42 Aligned_cols=90 Identities=26% Similarity=0.449 Sum_probs=82.1
Q ss_pred CCCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeec
Q psy1757 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKI 87 (348)
Q Consensus 8 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i 87 (348)
.........++|||+|||.++|+++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++..|.++.|
T Consensus 9 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l 88 (116)
T 2cqd_A 9 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKA 88 (116)
T ss_dssp CCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEEC
T ss_pred CCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEE
Confidence 34566678899999999999999999999999999999999999999999999999999999999999987779999999
Q ss_pred Cccccccccc
Q psy1757 88 DPKRVTKRVN 97 (348)
Q Consensus 88 ~v~~a~~~~~ 97 (348)
.|+++.....
T Consensus 89 ~V~~a~~~~~ 98 (116)
T 2cqd_A 89 NVNLAYLGAK 98 (116)
T ss_dssp EEEESTTTCC
T ss_pred EEEEcccCCC
Confidence 9999866543
No 36
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.77 E-value=4.7e-19 Score=146.20 Aligned_cols=123 Identities=16% Similarity=0.226 Sum_probs=81.4
Q ss_pred EEEEEecCHHHHHHHHHhCC-cccCCeecCcccccccccCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCC
Q psy1757 60 FAFVTYTTQKAVDDLLAAGD-HYIGNKKIDPKRVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSK 138 (348)
Q Consensus 60 ~aFV~F~~~e~A~~Al~~~~-~~~~gr~i~v~~a~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~ 138 (348)
++|++|++...+..|++... ....++...-....+......++|||+|||+++++++|+++|++||.|+.|+|+.++.+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~ 85 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYT 85 (135)
T ss_dssp -----------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSS
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCCCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC
Confidence 57778888888888887643 22233221111112223345689999999999999999999999999999999999989
Q ss_pred CccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEcccCCCC
Q psy1757 139 NMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVKFNPET 182 (348)
Q Consensus 139 g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~~~~~~ 182 (348)
++++|||||+|.+.++|++|++.++ ..|.|++|.|++++++...
T Consensus 86 g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 86 KESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp SSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred CccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 9999999999999999999999875 8899999999999887553
No 37
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=136.33 Aligned_cols=90 Identities=24% Similarity=0.424 Sum_probs=82.8
Q ss_pred CCCCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCe
Q psy1757 7 GTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNK 85 (348)
Q Consensus 7 ~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr 85 (348)
+.+.+...+.++|||+|||.++|+++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||+ +++..+.|+
T Consensus 4 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2dnm_A 4 GSSGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGR 83 (103)
T ss_dssp CCCSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTB
T ss_pred CCCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 4456677889999999999999999999999999999999999999899999999999999999999999 578899999
Q ss_pred ecCcccccccc
Q psy1757 86 KIDPKRVTKRV 96 (348)
Q Consensus 86 ~i~v~~a~~~~ 96 (348)
.|.|+++....
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2dnm_A 84 ELRVQVARYGR 94 (103)
T ss_dssp CCEEEECSSCC
T ss_pred EEEEEECCcCC
Confidence 99999987654
No 38
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.76 E-value=1.3e-18 Score=139.15 Aligned_cols=104 Identities=19% Similarity=0.317 Sum_probs=92.8
Q ss_pred CCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCccc
Q psy1757 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKR 91 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~ 91 (348)
+..+++|||+|||.++|+++|+++|++||.|.+|.|+.+ +.++|||||+|.+.++|++|++ +++..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456799999999999999999999999999999999875 4568999999999999999999 678899999999999
Q ss_pred ccccccCCCceEEEcCCCCCCCHHHHHHHHhhcCC
Q psy1757 92 VTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGS 126 (348)
Q Consensus 92 a~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~ 126 (348)
+..+... .+++...++++|+++|++||.
T Consensus 82 a~~~~~~-------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAF-------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHT-------TTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhh-------hhhhHhHhHHHHHHHHHHhCC
Confidence 8765543 567888899999999999985
No 39
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.7e-18 Score=134.55 Aligned_cols=89 Identities=21% Similarity=0.417 Sum_probs=81.5
Q ss_pred CCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeec
Q psy1757 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKI 87 (348)
Q Consensus 9 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i 87 (348)
...+..+.++|||+|||.++|+++|+++|++||+|.+|+|++++.++.++|||||+|.+.++|++||+ +++..|.++.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (103)
T 2cq0_A 8 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLIL 87 (103)
T ss_dssp SCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 34567788999999999999999999999999999999999999899999999999999999999999 56789999999
Q ss_pred Cccccccccc
Q psy1757 88 DPKRVTKRVN 97 (348)
Q Consensus 88 ~v~~a~~~~~ 97 (348)
.|+++..+..
T Consensus 88 ~v~~a~~~~~ 97 (103)
T 2cq0_A 88 NVEWAKPSTN 97 (103)
T ss_dssp EEEESSCCCC
T ss_pred EEEECCCCCC
Confidence 9999876643
No 40
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3e-18 Score=134.73 Aligned_cols=90 Identities=23% Similarity=0.380 Sum_probs=82.0
Q ss_pred CCCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCee
Q psy1757 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKK 86 (348)
Q Consensus 8 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~ 86 (348)
....+....++|||+|||.++|+++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++||+. ++..|.++.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (105)
T 1x5u_A 7 GPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP 86 (105)
T ss_dssp CCCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB
T ss_pred CCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 3456667889999999999999999999999999999999999998999999999999999999999995 678999999
Q ss_pred cCccccccccc
Q psy1757 87 IDPKRVTKRVN 97 (348)
Q Consensus 87 i~v~~a~~~~~ 97 (348)
|.|+++..+..
T Consensus 87 l~v~~a~~~~~ 97 (105)
T 1x5u_A 87 IRVNKASAHNK 97 (105)
T ss_dssp CEEEETTTTSC
T ss_pred EEEEECCCCCc
Confidence 99999876543
No 41
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.76 E-value=5e-19 Score=137.10 Aligned_cols=84 Identities=24% Similarity=0.293 Sum_probs=75.2
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCC--eeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhC-C----cccC
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGE--VESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG-D----HYIG 83 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~--v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~-~----~~~~ 83 (348)
..+..-.||||+|||+++|+++|+++|++||. |.+|+|++|+.|+++||||||+|.+.++|++||+.+ + ..++
T Consensus 4 ~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~ 83 (95)
T 2lkz_A 4 HHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83 (95)
T ss_dssp CSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET
T ss_pred ccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC
Confidence 45667899999999999999999999999995 679999999999999999999999999999999853 3 2589
Q ss_pred CeecCcccccc
Q psy1757 84 NKKIDPKRVTK 94 (348)
Q Consensus 84 gr~i~v~~a~~ 94 (348)
||.|.|++++.
T Consensus 84 Gr~i~V~~Aks 94 (95)
T 2lkz_A 84 GKTIGVDFAKS 94 (95)
T ss_dssp TEEEEEEECCC
T ss_pred CEEEEEEEccC
Confidence 99999998854
No 42
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.76 E-value=1.6e-18 Score=137.67 Aligned_cols=88 Identities=39% Similarity=0.656 Sum_probs=76.6
Q ss_pred CCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecC
Q psy1757 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKID 88 (348)
Q Consensus 9 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~ 88 (348)
..+...+.++|||+|||.++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.++..++|+.|.
T Consensus 18 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~ 97 (109)
T 2rs2_A 18 GSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTID 97 (109)
T ss_dssp --------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEE
Confidence 34566788999999999999999999999999999999999999899999999999999999999999888999999999
Q ss_pred cccccccc
Q psy1757 89 PKRVTKRV 96 (348)
Q Consensus 89 v~~a~~~~ 96 (348)
|+++..+.
T Consensus 98 V~~a~~~~ 105 (109)
T 2rs2_A 98 PKVAFPRR 105 (109)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99987654
No 43
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.9e-18 Score=132.22 Aligned_cols=88 Identities=30% Similarity=0.488 Sum_probs=80.7
Q ss_pred CCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecC
Q psy1757 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKID 88 (348)
Q Consensus 9 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~ 88 (348)
......+.++|||+|||.++|+++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+. .+.+.|+.|.
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~ 86 (103)
T 2cqg_A 8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCD 86 (103)
T ss_dssp CSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEE
T ss_pred CCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEE
Confidence 455667789999999999999999999999999999999999998999999999999999999999994 6789999999
Q ss_pred ccccccccc
Q psy1757 89 PKRVTKRVN 97 (348)
Q Consensus 89 v~~a~~~~~ 97 (348)
|+++..+..
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cqg_A 87 CKLPNSKQS 95 (103)
T ss_dssp EECCCTTCC
T ss_pred EEecCCCCc
Confidence 999877644
No 44
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=4.1e-18 Score=131.36 Aligned_cols=85 Identities=25% Similarity=0.534 Sum_probs=79.0
Q ss_pred CCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCccc
Q psy1757 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKR 91 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~ 91 (348)
...+++|||+|||.++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+ +++..+.|+.|.|++
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 3578999999999999999999999999999999999999899999999999999999999999 677899999999999
Q ss_pred cccccc
Q psy1757 92 VTKRVN 97 (348)
Q Consensus 92 a~~~~~ 97 (348)
+..+..
T Consensus 82 a~~~~~ 87 (95)
T 2dnz_A 82 VTERLD 87 (95)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 876643
No 45
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-18 Score=136.68 Aligned_cols=84 Identities=11% Similarity=0.226 Sum_probs=77.1
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCc
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDP 89 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v 89 (348)
-....+.++|||+|||.++|+++|+++|++||+|.+|+|++++. +.++|||||+|.+.++|++||+++++.+.|+.|.|
T Consensus 5 ~~~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V 83 (103)
T 1s79_A 5 LKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLI 83 (103)
T ss_dssp CSSCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEE
T ss_pred ccccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEE
Confidence 34556779999999999999999999999999999999999986 99999999999999999999998788999999999
Q ss_pred ccccc
Q psy1757 90 KRVTK 94 (348)
Q Consensus 90 ~~a~~ 94 (348)
.++..
T Consensus 84 ~~~~~ 88 (103)
T 1s79_A 84 LFKDD 88 (103)
T ss_dssp EEHHH
T ss_pred EEchH
Confidence 87653
No 46
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.4e-18 Score=132.92 Aligned_cols=86 Identities=23% Similarity=0.412 Sum_probs=79.3
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCcc
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPK 90 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~ 90 (348)
...+.++|||+|||.++|+++|+++|++||+|.+|+|+.++.+++++|||||+|.+.++|++||+ +++..+.++.|.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45678999999999999999999999999999999999999899999999999999999999995 56789999999999
Q ss_pred ccccccc
Q psy1757 91 RVTKRVN 97 (348)
Q Consensus 91 ~a~~~~~ 97 (348)
++..+..
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9877644
No 47
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=5.4e-18 Score=135.58 Aligned_cols=88 Identities=20% Similarity=0.347 Sum_probs=80.1
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecC
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKID 88 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~ 88 (348)
.....+.++|||+|||.++|+++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+ +++..|.++.|.
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3445567999999999999999999999999999999999999899999999999999999999996 577899999999
Q ss_pred ccccccccc
Q psy1757 89 PKRVTKRVN 97 (348)
Q Consensus 89 v~~a~~~~~ 97 (348)
|+++..+..
T Consensus 99 V~~a~~~~~ 107 (115)
T 2cpz_A 99 VQLKRSKND 107 (115)
T ss_dssp EECCCCSCC
T ss_pred EEEcCCCCc
Confidence 999876643
No 48
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.4e-18 Score=133.69 Aligned_cols=89 Identities=30% Similarity=0.545 Sum_probs=81.1
Q ss_pred CCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeec
Q psy1757 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKI 87 (348)
Q Consensus 9 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i 87 (348)
......+.++|||+|||.++|+++|+++|++||+|.+|+|++++.++.++|||||+|.+.++|++||+ +++..+.++.|
T Consensus 5 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 1x5s_A 5 SSGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 84 (102)
T ss_dssp CCCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 34556788999999999999999999999999999999999999899999999999999999999996 57789999999
Q ss_pred Cccccccccc
Q psy1757 88 DPKRVTKRVN 97 (348)
Q Consensus 88 ~v~~a~~~~~ 97 (348)
.|+++..+..
T Consensus 85 ~v~~a~~~~~ 94 (102)
T 1x5s_A 85 RVDQAGKSSD 94 (102)
T ss_dssp EEEEEECCCC
T ss_pred EEEECCCCCC
Confidence 9999876544
No 49
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.75 E-value=7.2e-18 Score=134.81 Aligned_cols=89 Identities=20% Similarity=0.496 Sum_probs=81.6
Q ss_pred CCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeec
Q psy1757 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKI 87 (348)
Q Consensus 9 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i 87 (348)
...+..+.++|||+|||.++|+++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|++||+. ++..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 455667889999999999999999999999999999999999988999999999999999999999984 6789999999
Q ss_pred Cccccccccc
Q psy1757 88 DPKRVTKRVN 97 (348)
Q Consensus 88 ~v~~a~~~~~ 97 (348)
.|+++..+..
T Consensus 88 ~V~~a~~~~~ 97 (115)
T 2dgo_A 88 RTNWATRKPP 97 (115)
T ss_dssp EEEESSCCCC
T ss_pred EEEEccCCCC
Confidence 9999876644
No 50
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.75 E-value=3.6e-18 Score=129.42 Aligned_cols=82 Identities=22% Similarity=0.525 Sum_probs=74.7
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCcccc
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKRV 92 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~a 92 (348)
.+.++|||+|||.++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|++|++ +++..+.|+.|.|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 467899999999999999999999999999999999998899999999999999999999999 5778999999999988
Q ss_pred ccc
Q psy1757 93 TKR 95 (348)
Q Consensus 93 ~~~ 95 (348)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 653
No 51
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.9e-18 Score=131.55 Aligned_cols=87 Identities=20% Similarity=0.285 Sum_probs=79.0
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCee-EEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCee-
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVE-SISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKK- 86 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~-~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~- 86 (348)
.......++|||+|||.++|+++|+++|++||+|. +|+|++++.+++++|||||+|.+.++|++||+ +++..+.++.
T Consensus 3 s~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 82 (99)
T 2div_A 3 SGSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATP 82 (99)
T ss_dssp CCCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSS
T ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCc
Confidence 34556789999999999999999999999999999 99999999999999999999999999999999 4668899999
Q ss_pred ---cCcccccccc
Q psy1757 87 ---IDPKRVTKRV 96 (348)
Q Consensus 87 ---i~v~~a~~~~ 96 (348)
|+|.++....
T Consensus 83 ~~~l~v~~a~~~~ 95 (99)
T 2div_A 83 AKRFKLNYATYSG 95 (99)
T ss_dssp CEECCEEETTCCS
T ss_pred ceeEEEeecCCCC
Confidence 8898886543
No 52
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.9e-18 Score=130.01 Aligned_cols=85 Identities=26% Similarity=0.432 Sum_probs=79.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCcccc-ccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEE
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEF-QQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKR 175 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v-~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~ 175 (348)
...++|||+|||.++++++|+++|++||.|+.| +|+.++.++.++|||||+|.+.++|++|++.++ ..|+|++|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356899999999999999999999999999999 999998899999999999999999999999875 889999999999
Q ss_pred cccCCCC
Q psy1757 176 VKFNPET 182 (348)
Q Consensus 176 a~~~~~~ 182 (348)
++++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9887653
No 53
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.75 E-value=1.5e-19 Score=162.39 Aligned_cols=81 Identities=17% Similarity=0.317 Sum_probs=75.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcC--CccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEE
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQYG--SITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKR 175 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~ 175 (348)
..++|||+||++++|+++|+++|++|| .|++|+|++++.++++||||||+|.+.++|++||+.++ +.|+|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457899999999999999999999999 99999999999999999999999999999999999885 899999999999
Q ss_pred cccC
Q psy1757 176 VKFN 179 (348)
Q Consensus 176 a~~~ 179 (348)
+++.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8764
No 54
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.2e-18 Score=130.72 Aligned_cols=86 Identities=26% Similarity=0.381 Sum_probs=79.1
Q ss_pred CCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeec
Q psy1757 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKI 87 (348)
Q Consensus 9 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i 87 (348)
........++|||+|||.++|+++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++||+ +++..+.++.|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 8 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 44556778999999999999999999999999999999999999899999999999999999999999 57789999999
Q ss_pred Ccccccc
Q psy1757 88 DPKRVTK 94 (348)
Q Consensus 88 ~v~~a~~ 94 (348)
.|++++.
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9998753
No 55
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.75 E-value=4.5e-18 Score=140.59 Aligned_cols=85 Identities=20% Similarity=0.363 Sum_probs=79.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEc
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRV 176 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a 176 (348)
...++|||+|||.++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++|++.++ ..|.|+.|+|+++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 345899999999999999999999999999999999999999999999999999999999999875 8899999999999
Q ss_pred ccCCCC
Q psy1757 177 KFNPET 182 (348)
Q Consensus 177 ~~~~~~ 182 (348)
+++..+
T Consensus 120 ~~~~~~ 125 (139)
T 1u6f_A 120 ASGHQR 125 (139)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987654
No 56
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=8.7e-18 Score=130.92 Aligned_cols=88 Identities=17% Similarity=0.307 Sum_probs=79.7
Q ss_pred CCCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCee
Q psy1757 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKK 86 (348)
Q Consensus 8 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~ 86 (348)
.......+.++|||+|||.++|+++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|++||+ +++..+.|+.
T Consensus 9 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 87 (100)
T 2do4_A 9 FRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENI 87 (100)
T ss_dssp CCCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred cCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 344556778999999999999999999999999999999999998 99999999999999999999996 4778999999
Q ss_pred cCcccccccc
Q psy1757 87 IDPKRVTKRV 96 (348)
Q Consensus 87 i~v~~a~~~~ 96 (348)
|.|+++.++.
T Consensus 88 l~v~~a~~~~ 97 (100)
T 2do4_A 88 IKVAISNSGP 97 (100)
T ss_dssp EEEEECCCCS
T ss_pred EEEEECCCCC
Confidence 9999987653
No 57
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=6.5e-18 Score=132.43 Aligned_cols=87 Identities=18% Similarity=0.351 Sum_probs=79.3
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCc
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDP 89 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v 89 (348)
.......++|||+|||.++|+++|+++|++|| |.+|+|++++.+++++|||||+|.+.++|++||++++..|.|+.|.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V 87 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRV 87 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEE
Confidence 34456789999999999999999999999997 99999999999999999999999999999999977888999999999
Q ss_pred cccccccc
Q psy1757 90 KRVTKRVN 97 (348)
Q Consensus 90 ~~a~~~~~ 97 (348)
+++..+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dng_A 88 DIAEGRKQ 95 (103)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99876543
No 58
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5.1e-18 Score=130.56 Aligned_cols=86 Identities=20% Similarity=0.365 Sum_probs=78.6
Q ss_pred CCCCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCe
Q psy1757 7 GTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNK 85 (348)
Q Consensus 7 ~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr 85 (348)
..+.....+.++|||+|||.++++++|+++|++||+|.+|+|+.++.+++++|||||+|.+.++|++||+ +++..+.++
T Consensus 7 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 86 (94)
T 2e5h_A 7 GMSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGR 86 (94)
T ss_dssp CCCCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTE
T ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 3455666788999999999999999999999999999999999999899999999999999999999997 567899999
Q ss_pred ecCcccc
Q psy1757 86 KIDPKRV 92 (348)
Q Consensus 86 ~i~v~~a 92 (348)
.|.|+++
T Consensus 87 ~l~v~~a 93 (94)
T 2e5h_A 87 VIKASIA 93 (94)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 9999876
No 59
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=9.9e-18 Score=130.28 Aligned_cols=85 Identities=27% Similarity=0.453 Sum_probs=79.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEc
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRV 176 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a 176 (348)
...++|||+|||+++++++|+++|++||.|+.|+|+.++.+++++|||||+|.+.++|++|++.++ ..|.|++|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 456899999999999999999999999999999999999899999999999999999999998875 8899999999999
Q ss_pred ccCCCC
Q psy1757 177 KFNPET 182 (348)
Q Consensus 177 ~~~~~~ 182 (348)
+++...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 988764
No 60
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.74 E-value=7.9e-18 Score=133.41 Aligned_cols=88 Identities=27% Similarity=0.526 Sum_probs=80.8
Q ss_pred CCCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCee
Q psy1757 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKK 86 (348)
Q Consensus 8 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~ 86 (348)
.......+.++|||+|||.++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+ +++..+.|+.
T Consensus 18 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 18 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp SSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred ccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 345566788999999999999999999999999999999999998899999999999999999999997 5778999999
Q ss_pred cCccccccc
Q psy1757 87 IDPKRVTKR 95 (348)
Q Consensus 87 i~v~~a~~~ 95 (348)
|.|+++.++
T Consensus 98 l~V~~a~~k 106 (108)
T 2jrs_A 98 MKVGHVTER 106 (108)
T ss_dssp CEEECSCSS
T ss_pred EEEEEcccC
Confidence 999998765
No 61
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.74 E-value=6.5e-18 Score=126.82 Aligned_cols=80 Identities=24% Similarity=0.404 Sum_probs=75.3
Q ss_pred CCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCcccccc
Q psy1757 16 ERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKRVTK 94 (348)
Q Consensus 16 ~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~a~~ 94 (348)
+.+|||+|||.++|+++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|++|++ +++..+.|+.|.|+++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 3689999999999999999999999999999999998899999999999999999999999 577899999999999876
Q ss_pred c
Q psy1757 95 R 95 (348)
Q Consensus 95 ~ 95 (348)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 5
No 62
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.9e-18 Score=131.72 Aligned_cols=85 Identities=28% Similarity=0.521 Sum_probs=78.7
Q ss_pred CCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEE-EEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCcc
Q psy1757 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESI-SIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPK 90 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i-~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~ 90 (348)
..+.++|||+|||.++|+++|+++|++||.|.+| +|++++.++.++|||||+|.+.++|++||+ +++..+.|+.|.|+
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4578999999999999999999999999999999 999998899999999999999999999999 56789999999999
Q ss_pred ccccccc
Q psy1757 91 RVTKRVN 97 (348)
Q Consensus 91 ~a~~~~~ 97 (348)
++..+..
T Consensus 82 ~a~~~~~ 88 (96)
T 1x5t_A 82 YAFKKDS 88 (96)
T ss_dssp ESCCCCC
T ss_pred EecccCC
Confidence 9876644
No 63
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.3e-18 Score=133.08 Aligned_cols=86 Identities=27% Similarity=0.446 Sum_probs=78.9
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCc
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDP 89 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v 89 (348)
....+.++|||+|||.++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|++||+ +++..+.|+.|.|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 344567899999999999999999999999999999999999999999999999999999999998 5788999999999
Q ss_pred ccccccc
Q psy1757 90 KRVTKRV 96 (348)
Q Consensus 90 ~~a~~~~ 96 (348)
+++..+.
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9987653
No 64
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=6.5e-18 Score=134.05 Aligned_cols=89 Identities=20% Similarity=0.391 Sum_probs=81.0
Q ss_pred CCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-C------Ccc
Q psy1757 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-G------DHY 81 (348)
Q Consensus 9 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~------~~~ 81 (348)
......+.++|||+|||.++|+++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|++||+. + +..
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 8 LPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred CCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 345567789999999999999999999999999999999999999999999999999999999999985 4 689
Q ss_pred cCCeecCccccccccc
Q psy1757 82 IGNKKIDPKRVTKRVN 97 (348)
Q Consensus 82 ~~gr~i~v~~a~~~~~ 97 (348)
+.|+.|.|+++..+..
T Consensus 88 ~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 88 LDGRQLKVDLAVTRDE 103 (111)
T ss_dssp SSSCEEEEECCCCCCC
T ss_pred EcCEEEEEEECCCCcc
Confidence 9999999999876543
No 65
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.74 E-value=5e-18 Score=128.07 Aligned_cols=81 Identities=25% Similarity=0.425 Sum_probs=75.7
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCcc
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPK 90 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~ 90 (348)
...+.++|||+|||.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|++ +++..+.|+.|.|+
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 35678999999999999999999999999999999999998899999999999999999999996 57889999999998
Q ss_pred cc
Q psy1757 91 RV 92 (348)
Q Consensus 91 ~a 92 (348)
++
T Consensus 83 ~a 84 (85)
T 3mdf_A 83 LA 84 (85)
T ss_dssp EC
T ss_pred Ec
Confidence 76
No 66
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.5e-18 Score=131.03 Aligned_cols=86 Identities=35% Similarity=0.623 Sum_probs=79.7
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEEc
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRV 176 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~a 176 (348)
....++|||+|||.++++++|+++|++||.|+.|+|+.++.+++++|||||+|.+.++|++|++..+..|+|+.|.|.++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45678999999999999999999999999999999999999999999999999999999999994468999999999999
Q ss_pred ccCCCC
Q psy1757 177 KFNPET 182 (348)
Q Consensus 177 ~~~~~~ 182 (348)
+++...
T Consensus 87 ~~~~~~ 92 (99)
T 2dgs_A 87 EPRDSK 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 987664
No 67
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.1e-18 Score=133.48 Aligned_cols=86 Identities=23% Similarity=0.417 Sum_probs=78.1
Q ss_pred CCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeE-EEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeec
Q psy1757 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVES-ISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKI 87 (348)
Q Consensus 9 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~-i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i 87 (348)
......+.++|||+|||+++|+++|+++|++||.|.+ |+|+.+ .+++++|||||+|.++++|++||+.++..+.++.|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i 86 (104)
T 1wg5_A 8 NSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYI 86 (104)
T ss_dssp CCSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEE
Confidence 3455677899999999999999999999999999998 888888 69999999999999999999999998889999999
Q ss_pred Cccccccc
Q psy1757 88 DPKRVTKR 95 (348)
Q Consensus 88 ~v~~a~~~ 95 (348)
.|..+..+
T Consensus 87 ~v~~~~~~ 94 (104)
T 1wg5_A 87 EIFKSSRA 94 (104)
T ss_dssp EEEEECTT
T ss_pred EEEECCHH
Confidence 99887654
No 68
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.74 E-value=5.4e-18 Score=133.45 Aligned_cols=90 Identities=26% Similarity=0.493 Sum_probs=80.6
Q ss_pred CCCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCccc---C
Q psy1757 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYI---G 83 (348)
Q Consensus 8 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~---~ 83 (348)
.......+.++|||+|||.++|+++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++||+ +++..+ .
T Consensus 5 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 84 (106)
T 2dgp_A 5 SSGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM 84 (106)
T ss_dssp CCSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCC
Confidence 345667788999999999999999999999999999999999999999999999999999999999998 566666 8
Q ss_pred CeecCccccccccc
Q psy1757 84 NKKIDPKRVTKRVN 97 (348)
Q Consensus 84 gr~i~v~~a~~~~~ 97 (348)
++.|.|+++..+..
T Consensus 85 g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 85 NRPIQVKPADSESR 98 (106)
T ss_dssp SSCCEEEECCCCSC
T ss_pred CceEEEEECCcccc
Confidence 89999999876543
No 69
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.74 E-value=6.7e-18 Score=138.17 Aligned_cols=87 Identities=25% Similarity=0.375 Sum_probs=80.5
Q ss_pred CCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeec
Q psy1757 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKI 87 (348)
Q Consensus 9 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i 87 (348)
......+.++|||+|||.++|+++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+ +++..|.|+.|
T Consensus 39 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 39 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp CSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 44566778999999999999999999999999999999999999999999999999999999999999 57789999999
Q ss_pred Cccccccc
Q psy1757 88 DPKRVTKR 95 (348)
Q Consensus 88 ~v~~a~~~ 95 (348)
.|+++..+
T Consensus 119 ~V~~a~~~ 126 (129)
T 2kxn_B 119 RVDFSITK 126 (129)
T ss_dssp EESCCSSS
T ss_pred EEEEecCC
Confidence 99998764
No 70
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1e-17 Score=131.96 Aligned_cols=89 Identities=21% Similarity=0.443 Sum_probs=81.0
Q ss_pred CCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeC-CCCCCcceEEEEEecCHHHHHHHHHh--CCcccCCe
Q psy1757 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKND-PYTGQSRGFAFVTYTTQKAVDDLLAA--GDHYIGNK 85 (348)
Q Consensus 9 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d-~~tg~~kG~aFV~F~~~e~A~~Al~~--~~~~~~gr 85 (348)
........++|||+|||.++|+++|+++|++||.|++|+|+++ +.+++++|||||+|.+.++|++||+. ++..|.|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 8 QVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred ccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 4455677899999999999999999999999999999999998 78999999999999999999999986 57899999
Q ss_pred ecCccccccccc
Q psy1757 86 KIDPKRVTKRVN 97 (348)
Q Consensus 86 ~i~v~~a~~~~~ 97 (348)
.|.|+++..+..
T Consensus 88 ~l~v~~a~~~~~ 99 (107)
T 2cph_A 88 RLVLEWADSEVT 99 (107)
T ss_dssp BCEEEECCCCCC
T ss_pred EEEEEeCCCCCC
Confidence 999999876543
No 71
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.9e-18 Score=133.81 Aligned_cols=85 Identities=16% Similarity=0.236 Sum_probs=77.1
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCc
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDP 89 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v 89 (348)
.......++|||+|||+++|+++|+++|++||.| +|+|++++ +++++|||||+|++.++|++||+++++.|.++.|.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVEL 86 (102)
T ss_dssp SCCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEE
Confidence 4566778999999999999999999999999955 99999998 999999999999999999999988888999999999
Q ss_pred ccccccc
Q psy1757 90 KRVTKRV 96 (348)
Q Consensus 90 ~~a~~~~ 96 (348)
..+....
T Consensus 87 ~~~~~~~ 93 (102)
T 1wez_A 87 FLNSTAG 93 (102)
T ss_dssp EEECCCC
T ss_pred EECCCCC
Confidence 8876543
No 72
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=130.32 Aligned_cols=86 Identities=22% Similarity=0.405 Sum_probs=78.4
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhc-CCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcc-cCCeec
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQ-YGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHY-IGNKKI 87 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~-~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~-~~gr~i 87 (348)
.+....++|||+|||.++|+++|+++|++ ||.|.+|+|+.++ ++.++|||||+|.+.++|++||+. ++.. +.|+.|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 45567899999999999999999999999 9999999999998 999999999999999999999995 5567 999999
Q ss_pred Cccccccccc
Q psy1757 88 DPKRVTKRVN 97 (348)
Q Consensus 88 ~v~~a~~~~~ 97 (348)
.|+++..+..
T Consensus 83 ~v~~a~~~~~ 92 (104)
T 2dhg_A 83 RLSVAIPKAS 92 (104)
T ss_dssp CCCBCCCCCS
T ss_pred EEEEccCCCc
Confidence 9999876543
No 73
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.1e-18 Score=132.66 Aligned_cols=89 Identities=22% Similarity=0.360 Sum_probs=80.9
Q ss_pred CCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeec
Q psy1757 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKI 87 (348)
Q Consensus 9 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i 87 (348)
......+.++|||+|||.++|+++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+ +++..+.++.|
T Consensus 5 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2cqb_A 5 SSGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 84 (102)
T ss_dssp SSCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEE
T ss_pred cCCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 34455678999999999999999999999999999999999998899999999999999999999997 57789999999
Q ss_pred Cccccccccc
Q psy1757 88 DPKRVTKRVN 97 (348)
Q Consensus 88 ~v~~a~~~~~ 97 (348)
.|+++..+..
T Consensus 85 ~V~~a~~~~~ 94 (102)
T 2cqb_A 85 RVNLAKPMRI 94 (102)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999876543
No 74
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.9e-18 Score=131.27 Aligned_cols=87 Identities=25% Similarity=0.461 Sum_probs=80.2
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~ 175 (348)
....++|||+|||.++++++|+++|++||.|+.|+|+.++.+++++|||||+|.+.++|++|++.+ +..|+|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 345689999999999999999999999999999999999999999999999999999999999887 4889999999999
Q ss_pred cccCCCCC
Q psy1757 176 VKFNPETM 183 (348)
Q Consensus 176 a~~~~~~~ 183 (348)
++++....
T Consensus 89 a~~~~~~~ 96 (102)
T 2cqb_A 89 AKPMRIKE 96 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 99876643
No 75
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=5.3e-18 Score=130.76 Aligned_cols=84 Identities=26% Similarity=0.425 Sum_probs=78.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEEc
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKRV 176 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~a 176 (348)
...++|||+|||.++++++|+++|++||.|+.|+++.++.+++++|||||+|.+.++|++|++.+ +..|+|++|.|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35689999999999999999999999999999999999999999999999999999999999976 58899999999999
Q ss_pred ccCCC
Q psy1757 177 KFNPE 181 (348)
Q Consensus 177 ~~~~~ 181 (348)
+++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 88765
No 76
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.74 E-value=5e-18 Score=135.07 Aligned_cols=83 Identities=14% Similarity=0.205 Sum_probs=77.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEc
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRV 176 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a 176 (348)
+..++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++|++.++ ..|.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356899999999999999999999999999999999999999999999999999999999999875 8999999999998
Q ss_pred ccCC
Q psy1757 177 KFNP 180 (348)
Q Consensus 177 ~~~~ 180 (348)
....
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 7553
No 77
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=7e-18 Score=130.89 Aligned_cols=85 Identities=22% Similarity=0.389 Sum_probs=77.6
Q ss_pred CCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCC---CCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecC
Q psy1757 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPY---TGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKID 88 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~---tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~ 88 (348)
..+.++|||+|||.++|+++|+++|++||+|.+|+|+.++. |+.++|||||+|.+.++|++||+. ++..+.++.|.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 35789999999999999999999999999999999999876 669999999999999999999995 67899999999
Q ss_pred ccccccccc
Q psy1757 89 PKRVTKRVN 97 (348)
Q Consensus 89 v~~a~~~~~ 97 (348)
|+++..+..
T Consensus 82 V~~a~~~~~ 90 (98)
T 2cpf_A 82 VRISERATK 90 (98)
T ss_dssp EECSSCSSC
T ss_pred EEEccCCCC
Confidence 999876644
No 78
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=127.54 Aligned_cols=85 Identities=20% Similarity=0.397 Sum_probs=78.4
Q ss_pred CCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecC
Q psy1757 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKID 88 (348)
Q Consensus 9 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~ 88 (348)
......+.++|||+|||.++|+++|+++|++| .|.+|+|+++ .+++++|||||+|.+.++|++||++++..+.|+.|.
T Consensus 3 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~ 80 (91)
T 2dgw_A 3 SGSSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIE 80 (91)
T ss_dssp CCCCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEE
T ss_pred CCCCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEE
Confidence 44566788999999999999999999999999 9999999999 699999999999999999999999777899999999
Q ss_pred ccccccc
Q psy1757 89 PKRVTKR 95 (348)
Q Consensus 89 v~~a~~~ 95 (348)
|.++..+
T Consensus 81 v~~a~~~ 87 (91)
T 2dgw_A 81 VFREKSG 87 (91)
T ss_dssp EEEESSC
T ss_pred EEECCcC
Confidence 9988665
No 79
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.73 E-value=3.1e-18 Score=132.64 Aligned_cols=80 Identities=21% Similarity=0.294 Sum_probs=73.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCC--ccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-C----eeCCeEE
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQYGS--ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-Q----VICGKEV 171 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~~G~--i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~----~i~G~~i 171 (348)
.-.+|||+|||+++|+++|+++|++||. |.+|++++|+.++++||||||+|.+.++|++|++.++ . .|+|++|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4578999999999999999999999995 6789999999999999999999999999999999874 2 5999999
Q ss_pred EEEEccc
Q psy1757 172 DVKRVKF 178 (348)
Q Consensus 172 ~v~~a~~ 178 (348)
.|++++.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999875
No 80
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.73 E-value=2.7e-18 Score=131.41 Aligned_cols=80 Identities=19% Similarity=0.301 Sum_probs=70.1
Q ss_pred CEEEEcCCCCcccHHHHHHHhhcCC--CeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCccccc
Q psy1757 17 RKLFVGGLHRNTGEKEINDYFSQYG--EVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKRVT 93 (348)
Q Consensus 17 ~~lfVgnLp~~~te~~L~~~F~~~G--~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~a~ 93 (348)
.+|||+|||.++|+++|+++|++|| .|.+|+|+.++.+++++|||||+|.+.++|++||+ +++..+.|+.|.|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 99999999999999999999999999999999997 56679999999999987
Q ss_pred ccc
Q psy1757 94 KRV 96 (348)
Q Consensus 94 ~~~ 96 (348)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 81
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=2.7e-18 Score=126.58 Aligned_cols=75 Identities=36% Similarity=0.642 Sum_probs=71.5
Q ss_pred EEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCcccc
Q psy1757 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRV 92 (348)
Q Consensus 18 ~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~a 92 (348)
+|||+|||.++|+++|+++|++||+|.+|+|+.++.+++++|||||+|.+.++|++|+++++..+.|+.|.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999999998999999999999999999999998888999999988764
No 82
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1e-17 Score=131.58 Aligned_cols=87 Identities=22% Similarity=0.415 Sum_probs=80.6
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEE
Q psy1757 96 VNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVK 174 (348)
Q Consensus 96 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~ 174 (348)
.....++|||+|||+++++++|+++|++||.|+.|+|+.++.++.++|||||+|.+.++|++|++.++ ..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999875 88999999999
Q ss_pred EcccCCCC
Q psy1757 175 RVKFNPET 182 (348)
Q Consensus 175 ~a~~~~~~ 182 (348)
+++++...
T Consensus 91 ~a~~~~~~ 98 (105)
T 1x5u_A 91 KASAHNKN 98 (105)
T ss_dssp ETTTTSCC
T ss_pred ECCCCCcC
Confidence 99987664
No 83
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.73 E-value=9.3e-18 Score=134.22 Aligned_cols=87 Identities=23% Similarity=0.376 Sum_probs=80.3
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~ 175 (348)
.+..++|||+|||.++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++|++.+ +..|+|++|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999999999989999999999999999999999887 5899999999999
Q ss_pred cccCCCCC
Q psy1757 176 VKFNPETM 183 (348)
Q Consensus 176 a~~~~~~~ 183 (348)
++++....
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpz_A 102 KRSKNDSK 109 (115)
T ss_dssp CCCSCCCC
T ss_pred cCCCCcCC
Confidence 99886643
No 84
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=130.18 Aligned_cols=87 Identities=17% Similarity=0.378 Sum_probs=79.3
Q ss_pred CCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeec
Q psy1757 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKI 87 (348)
Q Consensus 9 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i 87 (348)
......+.++|||+|||.++|+++|+++|++||.|.+|+|+.+ ++.++|||||+|.+.++|++||+ +++..+.++.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2d9p_A 8 DRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 85 (103)
T ss_dssp CCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3455668899999999999999999999999999999999998 89999999999999999999998 57789999999
Q ss_pred Cccccccccc
Q psy1757 88 DPKRVTKRVN 97 (348)
Q Consensus 88 ~v~~a~~~~~ 97 (348)
.|+++..+..
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2d9p_A 86 YVALAQRKEE 95 (103)
T ss_dssp EEEECSSCCC
T ss_pred EEEEeccccc
Confidence 9999876654
No 85
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.8e-18 Score=131.92 Aligned_cols=86 Identities=16% Similarity=0.410 Sum_probs=78.3
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCC-CCcceEEEEEecCHHHHHHHHHhCCcccCCeecCc
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYT-GQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDP 89 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~t-g~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v 89 (348)
......++|||+|||.++|+++|+++|++|| |.+|+|++++.+ ++++|||||+|.+.++|++||.+++..|.++.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRV 88 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEE
Confidence 3445679999999999999999999999999 999999999887 99999999999999999999977788999999999
Q ss_pred cccccccc
Q psy1757 90 KRVTKRVN 97 (348)
Q Consensus 90 ~~a~~~~~ 97 (348)
+++..+..
T Consensus 89 ~~a~~~~~ 96 (104)
T 1wi8_A 89 DVADQAQD 96 (104)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99876543
No 86
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.2e-18 Score=136.46 Aligned_cols=84 Identities=37% Similarity=0.697 Sum_probs=78.4
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCccccc
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVT 93 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~a~ 93 (348)
.+.++|||+|||.++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|++||+.++..|.|+.|.|+++.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 34589999999999999999999999999999999999989999999999999999999999997789999999999987
Q ss_pred cccc
Q psy1757 94 KRVN 97 (348)
Q Consensus 94 ~~~~ 97 (348)
.+..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 6644
No 87
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.73 E-value=2.4e-17 Score=129.48 Aligned_cols=86 Identities=21% Similarity=0.406 Sum_probs=77.4
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCC---ee
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGN---KK 86 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~g---r~ 86 (348)
....+.++|||+|||.++|+++|+++|++||.|++|+|+.++ ++.++|||||+|.+.++|++||+ +++..+.+ +.
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~ 88 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSS 88 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCcc
Confidence 344568999999999999999999999999999999999998 89999999999999999999998 46677887 99
Q ss_pred cCccccccccc
Q psy1757 87 IDPKRVTKRVN 97 (348)
Q Consensus 87 i~v~~a~~~~~ 97 (348)
|.|+++..+..
T Consensus 89 l~V~~a~~~~~ 99 (105)
T 2dnh_A 89 LVVKFADTDKE 99 (105)
T ss_dssp CEEEESCSSCC
T ss_pred EEEEECccCcc
Confidence 99999876544
No 88
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.73 E-value=9e-18 Score=129.45 Aligned_cols=84 Identities=21% Similarity=0.386 Sum_probs=75.8
Q ss_pred CCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeec
Q psy1757 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKI 87 (348)
Q Consensus 9 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i 87 (348)
........++|||+|||.++++++|+++|++||+|++|+|+.++ +++++|||||+|.+.++|++||+ +++..+.++.|
T Consensus 9 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (95)
T 2ywk_A 9 FPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87 (95)
T ss_dssp ---CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEE
Confidence 44566778999999999999999999999999999999999998 49999999999999999999999 67889999999
Q ss_pred Cccccc
Q psy1757 88 DPKRVT 93 (348)
Q Consensus 88 ~v~~a~ 93 (348)
.|+++.
T Consensus 88 ~V~~a~ 93 (95)
T 2ywk_A 88 NVSGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEEEcC
Confidence 998875
No 89
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.5e-18 Score=136.69 Aligned_cols=84 Identities=10% Similarity=0.095 Sum_probs=77.8
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCe-eEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCc
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEV-ESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDP 89 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v-~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v 89 (348)
....+.++|||+|||+++|+++|+++|++||.| .+|+|+.++ +++++|||||+|.+.++|++||+.++..|.++.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v 88 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFV 88 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEE
Confidence 446678999999999999999999999999999 899999998 999999999999999999999999888999999999
Q ss_pred cccccc
Q psy1757 90 KRVTKR 95 (348)
Q Consensus 90 ~~a~~~ 95 (348)
.++..+
T Consensus 89 ~~a~~~ 94 (114)
T 2cpy_A 89 HVVTLE 94 (114)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 987543
No 90
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7e-18 Score=131.86 Aligned_cols=86 Identities=26% Similarity=0.509 Sum_probs=79.8
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~ 175 (348)
....++|||+|||.++++++|+++|++||.|+.|+|+.++.++.++|||||+|.+.++|++|++.++ ..|+|++|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456899999999999999999999999999999999999999999999999999999999998874 889999999999
Q ss_pred cccCCCC
Q psy1757 176 VKFNPET 182 (348)
Q Consensus 176 a~~~~~~ 182 (348)
++++...
T Consensus 89 a~~~~~~ 95 (102)
T 1x5s_A 89 AGKSSDN 95 (102)
T ss_dssp EECCCCC
T ss_pred CCCCCCC
Confidence 9987764
No 91
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=128.69 Aligned_cols=84 Identities=23% Similarity=0.369 Sum_probs=77.7
Q ss_pred CCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeE--------EEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCC
Q psy1757 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVES--------ISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGD 79 (348)
Q Consensus 9 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~--------i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~ 79 (348)
........++|||+|||.++|+++|+++|++||.|.+ |+|+.++.+++++|||||+|.+.++|++||+ +++
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3455677899999999999999999999999999999 9999999899999999999999999999998 578
Q ss_pred cccCCeecCcccc
Q psy1757 80 HYIGNKKIDPKRV 92 (348)
Q Consensus 80 ~~~~gr~i~v~~a 92 (348)
..+.|+.|.|+++
T Consensus 86 ~~~~g~~l~V~~A 98 (99)
T 2la6_A 86 KEFSGNPIKVSFA 98 (99)
T ss_dssp CBSSSSBCEEEEC
T ss_pred CEeCCcEEEEEec
Confidence 8999999998876
No 92
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.73 E-value=8.2e-18 Score=127.97 Aligned_cols=81 Identities=22% Similarity=0.506 Sum_probs=76.2
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCcccccc
Q psy1757 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVTK 94 (348)
Q Consensus 15 ~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~a~~ 94 (348)
+.++|||+|||.++|+++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++|+.+++..+.|+.|.|+++..
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 46899999999999999999999999999999999998899999999999999999999997788899999999998865
Q ss_pred c
Q psy1757 95 R 95 (348)
Q Consensus 95 ~ 95 (348)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 93
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=133.84 Aligned_cols=84 Identities=27% Similarity=0.474 Sum_probs=77.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEc
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRV 176 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a 176 (348)
...++|||+|||.++++++|+++|++||.|+.|+|+.+. ++.++|||||+|.+.++|++|++.++ ..|+|+.|.|+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 356899999999999999999999999999999999988 89999999999999999999999875 8899999999999
Q ss_pred ccCCCC
Q psy1757 177 KFNPET 182 (348)
Q Consensus 177 ~~~~~~ 182 (348)
+++...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 887654
No 94
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.4e-18 Score=137.40 Aligned_cols=82 Identities=21% Similarity=0.348 Sum_probs=76.9
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCccccc
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVT 93 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~a~ 93 (348)
.+.++|||+|||.++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|++||.+++..|.|+.|.|+++.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 45689999999999999999999999999999999999989999999999999999999999778899999999999886
Q ss_pred cc
Q psy1757 94 KR 95 (348)
Q Consensus 94 ~~ 95 (348)
.+
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 95
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.73 E-value=9.8e-18 Score=134.63 Aligned_cols=82 Identities=20% Similarity=0.317 Sum_probs=76.0
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCc
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDP 89 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v 89 (348)
....+.++|||+|||.++|+++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+. ++..+.|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4456679999999999999999999999999999999999988999999999999999999999985 678999999999
Q ss_pred ccc
Q psy1757 90 KRV 92 (348)
Q Consensus 90 ~~a 92 (348)
+++
T Consensus 115 ~~a 117 (118)
T 2khc_A 115 QLK 117 (118)
T ss_dssp EEC
T ss_pred Eec
Confidence 876
No 96
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.73 E-value=1.1e-18 Score=144.43 Aligned_cols=121 Identities=10% Similarity=0.082 Sum_probs=73.7
Q ss_pred eEEEEEecCHHHHHHHHHhCCcccCCeecCccc---ccccccCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCC
Q psy1757 59 GFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKR---VTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFD 135 (348)
Q Consensus 59 G~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~---a~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~ 135 (348)
|+||.+|..++.+..++........+....-.. .........++|||+|||+++|+++|+++|++|| |++|+|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d 80 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIG 80 (139)
T ss_dssp -------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCS
T ss_pred CcccccccCccccchhcccchhccCCCCCCCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEC
Confidence 678888888877766665433333332221111 1112234568999999999999999999999999 779999999
Q ss_pred CCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEEcccCCC
Q psy1757 136 KSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFNPE 181 (348)
Q Consensus 136 ~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~a~~~~~ 181 (348)
+. ++++|||||+|++.++|++||+..+..|+++.|+|..+.++..
T Consensus 81 ~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 81 PD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp SS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSCC
T ss_pred CC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCCC
Confidence 86 9999999999999999999995546889999999999887654
No 97
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=137.32 Aligned_cols=88 Identities=26% Similarity=0.427 Sum_probs=80.5
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecC
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKID 88 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~ 88 (348)
..+....++|||+|||.++|+++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+. ++..+.|+.|.
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 45566789999999999999999999999999999999999998999999999999999999999994 67899999999
Q ss_pred ccccccccc
Q psy1757 89 PKRVTKRVN 97 (348)
Q Consensus 89 v~~a~~~~~ 97 (348)
|+++..+..
T Consensus 116 v~~a~~~~~ 124 (139)
T 1u6f_A 116 VALAASGHQ 124 (139)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 999876543
No 98
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.73 E-value=3.9e-17 Score=130.48 Aligned_cols=87 Identities=24% Similarity=0.449 Sum_probs=80.6
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~ 175 (348)
....++|||+|||+++++++|+++|++||.|+.|+|+.++.++.++|||||+|.+.++|++||+.++ ..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4457899999999999999999999999999999999998899999999999999999999999874 889999999999
Q ss_pred cccCCCCC
Q psy1757 176 VKFNPETM 183 (348)
Q Consensus 176 a~~~~~~~ 183 (348)
++++....
T Consensus 92 a~~~~~~~ 99 (115)
T 2dgo_A 92 ATRKPPAP 99 (115)
T ss_dssp SSCCCCCS
T ss_pred ccCCCCCC
Confidence 99886643
No 99
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.4e-17 Score=129.14 Aligned_cols=86 Identities=27% Similarity=0.410 Sum_probs=79.5
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEEc
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRV 176 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~a 176 (348)
....++|||+|||+++++++|+++|++||.|+.|+|+.++.+++++|||||+|.+.++|++|++. .+.|+|+.|.|.++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEECC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEEec
Confidence 44568999999999999999999999999999999999999999999999999999999999995 67899999999999
Q ss_pred ccCCCCC
Q psy1757 177 KFNPETM 183 (348)
Q Consensus 177 ~~~~~~~ 183 (348)
.++....
T Consensus 91 ~~~~~~~ 97 (103)
T 2cqg_A 91 NSKQSQD 97 (103)
T ss_dssp CTTCCCC
T ss_pred CCCCcCC
Confidence 9887643
No 100
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.8e-18 Score=127.47 Aligned_cols=81 Identities=16% Similarity=0.332 Sum_probs=74.8
Q ss_pred CCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCccc
Q psy1757 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKR 91 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~ 91 (348)
..+.++|||+|||.++|+++|+++|++||+|.+|+|+.++.++.++|||||+|.+.++|++||+ +++..+.++.|++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 3578999999999999999999999999999999999999899999999999999999999999 466789999998887
Q ss_pred cc
Q psy1757 92 VT 93 (348)
Q Consensus 92 a~ 93 (348)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 101
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.72 E-value=1.2e-17 Score=132.51 Aligned_cols=87 Identities=28% Similarity=0.386 Sum_probs=79.8
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecC
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKID 88 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~ 88 (348)
.....+.++|||+|||.++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|++||+ +++..+.|+.|.
T Consensus 20 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 20 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp BCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 3445677899999999999999999999999999999999999899999999999999999999998 678899999999
Q ss_pred cccccccc
Q psy1757 89 PKRVTKRV 96 (348)
Q Consensus 89 v~~a~~~~ 96 (348)
|+++..+.
T Consensus 100 V~~a~~~~ 107 (110)
T 1oo0_B 100 VDWCFVKG 107 (110)
T ss_dssp EEESEESS
T ss_pred EEEcccCC
Confidence 99987654
No 102
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.72 E-value=1.3e-17 Score=128.91 Aligned_cols=82 Identities=21% Similarity=0.394 Sum_probs=76.6
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCccccc
Q psy1757 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKRVT 93 (348)
Q Consensus 15 ~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~a~ 93 (348)
.+++|||+|||.++++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++|++ +++..+.|+.|.|+++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36899999999999999999999999999999999999899999999999999999999997 57789999999999987
Q ss_pred ccc
Q psy1757 94 KRV 96 (348)
Q Consensus 94 ~~~ 96 (348)
.+.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 103
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=132.17 Aligned_cols=88 Identities=23% Similarity=0.340 Sum_probs=80.7
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCee--------EEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCc
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVE--------SISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDH 80 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~--------~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~ 80 (348)
..+..+.++|||+|||.++|+++|+++|++||.|. .|+|+.++.+++++|||||+|.+.++|++||+ +++.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 45667889999999999999999999999999999 69999998899999999999999999999998 5788
Q ss_pred ccCCeecCccccccccc
Q psy1757 81 YIGNKKIDPKRVTKRVN 97 (348)
Q Consensus 81 ~~~gr~i~v~~a~~~~~ 97 (348)
.|.++.|.|+++..+..
T Consensus 89 ~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPP 105 (113)
T ss_dssp EETTEECEEECSSCCCC
T ss_pred ccCCCEEEEEECCCCCC
Confidence 99999999999876543
No 104
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.72 E-value=4.3e-18 Score=132.98 Aligned_cols=82 Identities=17% Similarity=0.292 Sum_probs=76.2
Q ss_pred CCCCEEEEcCCCC------cccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCC-e
Q psy1757 14 NDERKLFVGGLHR------NTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGN-K 85 (348)
Q Consensus 14 ~~~~~lfVgnLp~------~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~g-r 85 (348)
..+++|||+|||. ++++++|+++|++||.|.+|+|++++.|+++||||||+|.+.++|++||+ +++..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4578999999999 99999999999999999999999999999999999999999999999997 57789998 9
Q ss_pred ecCccccccc
Q psy1757 86 KIDPKRVTKR 95 (348)
Q Consensus 86 ~i~v~~a~~~ 95 (348)
.|.|.++.++
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999988654
No 105
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.72 E-value=3.9e-17 Score=125.06 Aligned_cols=84 Identities=20% Similarity=0.323 Sum_probs=76.7
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCcc
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPK 90 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~ 90 (348)
...+.++|||+|||.++|+++|+++|++||+|.+|+|+++ +++++|||||+|.+.++|++||+ +++..+.++.|.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4567899999999999999999999999999999999984 88999999999999999999999 57789999999999
Q ss_pred ccccccc
Q psy1757 91 RVTKRVN 97 (348)
Q Consensus 91 ~a~~~~~ 97 (348)
++.....
T Consensus 82 ~a~~~~~ 88 (92)
T 2dgv_A 82 IDRNASG 88 (92)
T ss_dssp ECSCCSS
T ss_pred EcCCCCC
Confidence 9876654
No 106
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=130.74 Aligned_cols=87 Identities=24% Similarity=0.329 Sum_probs=80.6
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEE
Q psy1757 96 VNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVK 174 (348)
Q Consensus 96 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~ 174 (348)
.....++|||+|||.++++++|+++|++||.|+.|+|+.++.++.++|||||+|.+.++|++|++.++ ..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567999999999999999999999999999999999999899999999999999999999999875 88999999999
Q ss_pred EcccCCCC
Q psy1757 175 RVKFNPET 182 (348)
Q Consensus 175 ~a~~~~~~ 182 (348)
+++++...
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99987653
No 107
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.72 E-value=1.6e-17 Score=126.00 Aligned_cols=80 Identities=29% Similarity=0.620 Sum_probs=75.7
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEEc
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRV 176 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~a 176 (348)
....++|||+|||+++++++|+++|++||.|+.|+++.++.+++++|||||+|.+.++|++|++.++..|+|+.|.|++|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 45678999999999999999999999999999999999999999999999999999999999998888999999999875
No 108
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.72 E-value=6.2e-18 Score=131.98 Aligned_cols=86 Identities=15% Similarity=0.406 Sum_probs=73.9
Q ss_pred CCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCC-CCCCcceEEEEEecCHHHHHHHHHhCCcccCCeec
Q psy1757 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDP-YTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKI 87 (348)
Q Consensus 9 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~-~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i 87 (348)
........++|||+|||.++|+++|+++|++|| |.+|+|++++ .+++++|||||+|.+.++|++||++++..+.|+.|
T Consensus 12 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l 90 (100)
T 2j76_E 12 SRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRI 90 (100)
T ss_dssp --------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCC
T ss_pred CcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEE
Confidence 345567789999999999999999999999999 9999999998 68999999999999999999999778889999999
Q ss_pred Cccccccc
Q psy1757 88 DPKRVTKR 95 (348)
Q Consensus 88 ~v~~a~~~ 95 (348)
.|+++..+
T Consensus 91 ~V~~a~~~ 98 (100)
T 2j76_E 91 RVDVADQA 98 (100)
T ss_dssp CCEECCCS
T ss_pred EEEeccCC
Confidence 99998654
No 109
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=133.03 Aligned_cols=84 Identities=29% Similarity=0.510 Sum_probs=77.7
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCcc
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDPK 90 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v~ 90 (348)
+.++.++|||+|||.++|+++|+++|++||.|++|.|+.++ ++.++|||||+|.+.++|++||+. ++..+.|+.|.|+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45678999999999999999999999999999999999998 999999999999999999999985 6679999999999
Q ss_pred cccccc
Q psy1757 91 RVTKRV 96 (348)
Q Consensus 91 ~a~~~~ 96 (348)
++..+.
T Consensus 82 ~a~~~~ 87 (116)
T 2fy1_A 82 QAKKPS 87 (116)
T ss_dssp ECCCSS
T ss_pred ECCCCC
Confidence 987654
No 110
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=130.12 Aligned_cols=80 Identities=14% Similarity=0.183 Sum_probs=71.7
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-C--CcccCCeecC
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-G--DHYIGNKKID 88 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~--~~~~~gr~i~ 88 (348)
...+.++|||+|||+++|+++|+++|++||.|++|+|+++ ||||||+|++.++|++||+. + +..+.|+.|.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4567899999999999999999999999999999999975 58999999999999999984 3 3689999999
Q ss_pred ccccccccc
Q psy1757 89 PKRVTKRVN 97 (348)
Q Consensus 89 v~~a~~~~~ 97 (348)
|.++..+..
T Consensus 86 V~~A~~~~~ 94 (105)
T 1sjq_A 86 IQFSNHKEL 94 (105)
T ss_dssp BCCCSSSSC
T ss_pred EEEcCCCCC
Confidence 999976643
No 111
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4e-18 Score=126.15 Aligned_cols=76 Identities=43% Similarity=0.777 Sum_probs=72.3
Q ss_pred CEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCcccc
Q psy1757 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRV 92 (348)
Q Consensus 17 ~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~a 92 (348)
++|||+|||.++|+++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++|++.++..++|+.|.++++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 5899999999999999999999999999999999998999999999999999999999998779999999998875
No 112
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.72 E-value=1.8e-17 Score=130.48 Aligned_cols=87 Identities=21% Similarity=0.386 Sum_probs=79.3
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-Cee---CCeEE
Q psy1757 96 VNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVI---CGKEV 171 (348)
Q Consensus 96 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i---~G~~i 171 (348)
.....++|||+|||.++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++|++.++ ..+ .++.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 34567899999999999999999999999999999999999999999999999999999999999875 566 88999
Q ss_pred EEEEcccCCCC
Q psy1757 172 DVKRVKFNPET 182 (348)
Q Consensus 172 ~v~~a~~~~~~ 182 (348)
.|++++++...
T Consensus 89 ~v~~a~~~~~~ 99 (106)
T 2dgp_A 89 QVKPADSESRG 99 (106)
T ss_dssp EEEECCCCSCC
T ss_pred EEEECCccccc
Confidence 99999987653
No 113
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.72 E-value=3.3e-18 Score=126.00 Aligned_cols=75 Identities=39% Similarity=0.701 Sum_probs=71.5
Q ss_pred EEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCcccc
Q psy1757 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRV 92 (348)
Q Consensus 18 ~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~a 92 (348)
+|||+|||.++|+++|+++|++||+|.+|+|+.++.+++++|||||+|.+.++|++||+.+++.+.|+.|.++++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999999998999999999999999999999999888999999988764
No 114
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.4e-17 Score=131.35 Aligned_cols=87 Identities=23% Similarity=0.363 Sum_probs=79.9
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhcCCcc--------ccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCee
Q psy1757 96 VNPLKCKIFVGGLTTEITEQDVRDYFSQYGSIT--------EFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVI 166 (348)
Q Consensus 96 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i 166 (348)
.....++|||+|||.++++++|+++|++||.|+ .|+|+.++.+++++|||||+|.+.++|++||+.+ +..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999999 7999999899999999999999999999999986 5899
Q ss_pred CCeEEEEEEcccCCCC
Q psy1757 167 CGKEVDVKRVKFNPET 182 (348)
Q Consensus 167 ~G~~i~v~~a~~~~~~ 182 (348)
.|+.|.|.+++++...
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999987653
No 115
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.72 E-value=1.7e-17 Score=131.62 Aligned_cols=86 Identities=30% Similarity=0.534 Sum_probs=78.5
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEEc
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRV 176 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~a 176 (348)
....++|||+|||.++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++|++.++..|+|+.|.|.++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy1757 177 KFNPET 182 (348)
Q Consensus 177 ~~~~~~ 182 (348)
.++..+
T Consensus 102 ~~~~~~ 107 (109)
T 2rs2_A 102 FPRRAQ 107 (109)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 987653
No 116
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.4e-17 Score=128.24 Aligned_cols=87 Identities=23% Similarity=0.320 Sum_probs=77.6
Q ss_pred CCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeec
Q psy1757 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKI 87 (348)
Q Consensus 9 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i 87 (348)
........++|||+|||.++|+++|+++|++||.|++|+|++++. .++|||||+|.+.++|++||+ +++..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cqi_A 8 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 85 (103)
T ss_dssp CCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeE
Confidence 345667889999999999999999999999999999999999853 368999999999999999998 67789999999
Q ss_pred Cccccccccc
Q psy1757 88 DPKRVTKRVN 97 (348)
Q Consensus 88 ~v~~a~~~~~ 97 (348)
.|+++..+..
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2cqi_A 86 KVNWATTPSS 95 (103)
T ss_dssp EEEECCCTTC
T ss_pred EEEECCCCcc
Confidence 9999876543
No 117
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5e-17 Score=127.27 Aligned_cols=88 Identities=20% Similarity=0.385 Sum_probs=78.3
Q ss_pred CCCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCee
Q psy1757 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKK 86 (348)
Q Consensus 8 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~ 86 (348)
.......+.++|||+|||.++|+++|+++|++||.|.+|+|+.++. .++|||||+|.+.++|++||+ +++..|.++.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cq3_A 7 GNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRK 84 (103)
T ss_dssp CCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3456667889999999999999999999999999999999998863 389999999999999999998 5778999999
Q ss_pred cCccccccccc
Q psy1757 87 IDPKRVTKRVN 97 (348)
Q Consensus 87 i~v~~a~~~~~ 97 (348)
|.|+++..+..
T Consensus 85 l~v~~a~~~~~ 95 (103)
T 2cq3_A 85 IEVNNATARVM 95 (103)
T ss_dssp CEEEECCSSCC
T ss_pred EEEEEcccCCC
Confidence 99999876543
No 118
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=126.30 Aligned_cols=82 Identities=23% Similarity=0.407 Sum_probs=74.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEEc
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKRV 176 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~a 176 (348)
...++|||+|||.++++++|+++|++||.|++|+++.++.++.++|||||+|.+.++|++|++.+ +..++|+.|.|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 34689999999999999999999999999999999999889999999999999999999999987 58999999999999
Q ss_pred ccC
Q psy1757 177 KFN 179 (348)
Q Consensus 177 ~~~ 179 (348)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 119
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.72 E-value=1.1e-17 Score=135.92 Aligned_cols=87 Identities=22% Similarity=0.415 Sum_probs=80.4
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~ 175 (348)
....++|||+|||+++++++|+++|++||.|+.|.|+.+..++.++|||||+|.+.++|++|++.+ +..|+|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 445689999999999999999999999999999999999989999999999999999999999876 5889999999999
Q ss_pred cccCCCCC
Q psy1757 176 VKFNPETM 183 (348)
Q Consensus 176 a~~~~~~~ 183 (348)
++++....
T Consensus 99 a~~~~~~~ 106 (126)
T 3ex7_B 99 CFVRGPPK 106 (126)
T ss_dssp SEESSSCC
T ss_pred ecCCCCCC
Confidence 99887653
No 120
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2e-17 Score=132.45 Aligned_cols=84 Identities=30% Similarity=0.528 Sum_probs=78.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEEccc
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKF 178 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~a~~ 178 (348)
..++|||+|||+++++++|+++|++||.|+.|+|+.++.++.++|||||+|.+.++|++||+..+..|+|+.|.|.++++
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCC
Confidence 35899999999999999999999999999999999999999999999999999999999999966899999999999998
Q ss_pred CCCC
Q psy1757 179 NPET 182 (348)
Q Consensus 179 ~~~~ 182 (348)
+...
T Consensus 106 ~~~~ 109 (116)
T 1x4b_A 106 REES 109 (116)
T ss_dssp CCCC
T ss_pred CccC
Confidence 8663
No 121
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2e-17 Score=130.38 Aligned_cols=87 Identities=16% Similarity=0.374 Sum_probs=80.3
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCC-CCCCccceEEEEEECCHHHHHHHHHcC--CCeeCCeEEE
Q psy1757 96 VNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFD-KSKNMKKGFCFISFDDQNVADQVLKNP--KQVICGKEVD 172 (348)
Q Consensus 96 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-~~~g~~rG~aFV~F~~~e~A~~Al~~~--~~~i~G~~i~ 172 (348)
.....++|||+|||+++++++|+++|++||.|+.|+|+.+ +.++.++|||||+|.+.++|++|++.+ +..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3456789999999999999999999999999999999999 788999999999999999999999987 4889999999
Q ss_pred EEEcccCCCC
Q psy1757 173 VKRVKFNPET 182 (348)
Q Consensus 173 v~~a~~~~~~ 182 (348)
|.+++++...
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999987664
No 122
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3e-17 Score=128.86 Aligned_cols=83 Identities=20% Similarity=0.415 Sum_probs=77.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCC-CccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEE
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSK-NMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKR 175 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~ 175 (348)
...++|||+|||+++++++|+++|++|| |+.|+|+.++.+ ++++|||||+|.+.++|++|| .+ +..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4568999999999999999999999999 999999999887 899999999999999999999 65 5899999999999
Q ss_pred cccCCCC
Q psy1757 176 VKFNPET 182 (348)
Q Consensus 176 a~~~~~~ 182 (348)
++++...
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9987664
No 123
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=140.53 Aligned_cols=82 Identities=22% Similarity=0.421 Sum_probs=74.9
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcCC--CeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCcc
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQYG--EVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDPK 90 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~G--~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v~ 90 (348)
.+.++|||+|||+++|+++|+++|++|| .|.+|+|+.|+.+++++|||||+|.+.++|++||+. ++..|.|+.|.|+
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 999999999999999999999999999999999997 6689999999999
Q ss_pred ccccc
Q psy1757 91 RVTKR 95 (348)
Q Consensus 91 ~a~~~ 95 (348)
++..+
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 88643
No 124
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=8.5e-18 Score=133.46 Aligned_cols=84 Identities=17% Similarity=0.309 Sum_probs=75.1
Q ss_pred CCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecC
Q psy1757 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKID 88 (348)
Q Consensus 9 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~ 88 (348)
..+...+.++|||+|||+++|+++|+++|++| .|.+|+|+.|+ +++++|||||+|.++++|++||+++++.|.+|.|.
T Consensus 9 ~~~~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 86 (109)
T 2dnn_A 9 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVE 86 (109)
T ss_dssp CCCCCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEE
Confidence 33445567899999999999999999999999 89999999997 59999999999999999999998888999999998
Q ss_pred cccccc
Q psy1757 89 PKRVTK 94 (348)
Q Consensus 89 v~~a~~ 94 (348)
|..+..
T Consensus 87 V~~a~~ 92 (109)
T 2dnn_A 87 VSPATE 92 (109)
T ss_dssp EEECCH
T ss_pred EEECCc
Confidence 877643
No 125
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.6e-17 Score=130.49 Aligned_cols=87 Identities=17% Similarity=0.287 Sum_probs=80.0
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-------CCeeCCe
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-------KQVICGK 169 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-------~~~i~G~ 169 (348)
....++|||+|||+++++++|+++|++||.|+.|+|+.++.++.++|||||+|.+.++|++|++.+ +..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 345689999999999999999999999999999999999999999999999999999999999976 5789999
Q ss_pred EEEEEEcccCCCCC
Q psy1757 170 EVDVKRVKFNPETM 183 (348)
Q Consensus 170 ~i~v~~a~~~~~~~ 183 (348)
.|.|.++.++....
T Consensus 92 ~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 92 QLKVDLAVTRDEAA 105 (111)
T ss_dssp EEEEECCCCCCCCC
T ss_pred EEEEEECCCCccCC
Confidence 99999999876643
No 126
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.72 E-value=9.9e-18 Score=134.99 Aligned_cols=84 Identities=18% Similarity=0.305 Sum_probs=76.8
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCC---eeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCee
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGE---VESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKK 86 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~---v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~ 86 (348)
.....+.++|||+|||+++|+++|+++|+.||. |.+|+|+.++. ++++|||||+|.+.++|++||+++++.|.++.
T Consensus 11 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~ 89 (118)
T 2db1_A 11 GPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRY 89 (118)
T ss_dssp SSCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeE
Confidence 345567899999999999999999999999999 89999999985 99999999999999999999998888999999
Q ss_pred cCcccccc
Q psy1757 87 IDPKRVTK 94 (348)
Q Consensus 87 i~v~~a~~ 94 (348)
|.|.++..
T Consensus 90 i~V~~a~~ 97 (118)
T 2db1_A 90 IEVFKSHR 97 (118)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
Confidence 99987643
No 127
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=128.71 Aligned_cols=85 Identities=20% Similarity=0.366 Sum_probs=77.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCC---CCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEE
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKS---KNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDV 173 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v 173 (348)
...++|||+|||+++++++|+++|++||.|+.|+|+.+.. ++.++|||||+|.+.++|++|++.++ ..|+|++|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3468999999999999999999999999999999998876 66899999999999999999999874 8999999999
Q ss_pred EEcccCCCC
Q psy1757 174 KRVKFNPET 182 (348)
Q Consensus 174 ~~a~~~~~~ 182 (348)
++++++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999887654
No 128
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=6.8e-18 Score=131.77 Aligned_cols=88 Identities=26% Similarity=0.458 Sum_probs=77.7
Q ss_pred CEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCccccccc
Q psy1757 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDPKRVTKR 95 (348)
Q Consensus 17 ~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v~~a~~~ 95 (348)
++|||+|||.++|+++|+++|++||+|.+|+|+.+ ++|||||+|.+.++|++|++. ++..+.|+.|.|+++..+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999986 679999999999999999994 677899999999998765
Q ss_pred ccC-----------CCceEEEcCCC
Q psy1757 96 VNP-----------LKCKIFVGGLT 109 (348)
Q Consensus 96 ~~~-----------~~~~l~V~nLp 109 (348)
... ...+|||+||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 321 24789999986
No 129
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.71 E-value=2.8e-17 Score=129.53 Aligned_cols=83 Identities=20% Similarity=0.377 Sum_probs=76.6
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecC
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKID 88 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~ 88 (348)
.......++|||+|||.++|+++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|++||+ +++..+.|+.|.
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4556778999999999999999999999999999999999998 99999999999999999999999 578899999999
Q ss_pred ccccc
Q psy1757 89 PKRVT 93 (348)
Q Consensus 89 v~~a~ 93 (348)
|+++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 98864
No 130
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=131.13 Aligned_cols=86 Identities=20% Similarity=0.363 Sum_probs=79.4
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~ 175 (348)
....++|||+|||.++++++|+++|++||.|+.|+|+.++.++.++|||||+|.+.++|++|++.+ +..|+|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 345689999999999999999999999999999999999999999999999999999999999976 5889999999999
Q ss_pred cccCCCC
Q psy1757 176 VKFNPET 182 (348)
Q Consensus 176 a~~~~~~ 182 (348)
++++...
T Consensus 90 a~~~~~~ 96 (103)
T 2dnm_A 90 ARYGRRD 96 (103)
T ss_dssp CSSCCSC
T ss_pred CCcCCCC
Confidence 9876553
No 131
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=6e-17 Score=129.14 Aligned_cols=86 Identities=22% Similarity=0.286 Sum_probs=78.2
Q ss_pred CCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeec
Q psy1757 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKI 87 (348)
Q Consensus 9 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i 87 (348)
........++|||+|||.++|+++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|++||+ +++..|.++.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (114)
T 2do0_A 8 ALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPM 86 (114)
T ss_dssp CCCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEE
Confidence 34556678999999999999999999999999999999999997 69999999999999999999999 57889999999
Q ss_pred Cccccccc
Q psy1757 88 DPKRVTKR 95 (348)
Q Consensus 88 ~v~~a~~~ 95 (348)
.|+++...
T Consensus 87 ~v~~a~~~ 94 (114)
T 2do0_A 87 HVKMDERA 94 (114)
T ss_dssp EEEECSCC
T ss_pred EEEEcccC
Confidence 99987643
No 132
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.71 E-value=1.2e-17 Score=135.97 Aligned_cols=84 Identities=24% Similarity=0.407 Sum_probs=76.0
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCee--EEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeec
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVE--SISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKI 87 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~--~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i 87 (348)
.....+.++|||+|||+++|+++|+++|++| .|+ +|+|+.|+. ++++|||||+|.++++|++||+.++..|.+|.|
T Consensus 36 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I 113 (126)
T 2hgm_A 36 SADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYI 113 (126)
T ss_dssp TTCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEE
Confidence 3455678999999999999999999999999 677 899999985 999999999999999999999988899999999
Q ss_pred Cccccccc
Q psy1757 88 DPKRVTKR 95 (348)
Q Consensus 88 ~v~~a~~~ 95 (348)
.|..+..+
T Consensus 114 ~V~~a~~~ 121 (126)
T 2hgm_A 114 EVFKSSQE 121 (126)
T ss_dssp CCEEECHH
T ss_pred EEEECCHH
Confidence 99887544
No 133
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=137.02 Aligned_cols=86 Identities=21% Similarity=0.298 Sum_probs=77.4
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeE--EEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCc----cc
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVES--ISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDH----YI 82 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~--i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~----~~ 82 (348)
.......++|||+|||+++|+++|+++|++||.|.. |+|++|+.++++||||||+|.+. +|++||+. ++. .+
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 344567899999999999999999999999999976 99999999999999999999999 99999885 566 89
Q ss_pred CCeecCcccccccc
Q psy1757 83 GNKKIDPKRVTKRV 96 (348)
Q Consensus 83 ~gr~i~v~~a~~~~ 96 (348)
.|+.|.|+++..+.
T Consensus 96 ~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 96 DGKTINVEFAKGSK 109 (131)
T ss_dssp GGCCCCCEECCCSC
T ss_pred CCEEEEEEECCCCC
Confidence 99999999987653
No 134
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.71 E-value=4.1e-17 Score=137.58 Aligned_cols=84 Identities=21% Similarity=0.354 Sum_probs=77.8
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCc
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDP 89 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v 89 (348)
....+.++|||+|||.++|+++|+++|++||+|++|+|+.++.++.++|||||+|.+.++|++||+. ++..|.++.|.|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3345789999999999999999999999999999999999999999999999999999999999995 678999999999
Q ss_pred ccccc
Q psy1757 90 KRVTK 94 (348)
Q Consensus 90 ~~a~~ 94 (348)
+++..
T Consensus 114 ~~a~~ 118 (156)
T 1h2v_Z 114 DWDAG 118 (156)
T ss_dssp EEESC
T ss_pred EECCC
Confidence 99864
No 135
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=131.16 Aligned_cols=86 Identities=33% Similarity=0.530 Sum_probs=80.1
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEEc
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRV 176 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~a 176 (348)
....++|||+|||+++++++|+++|++||.|+.|+|+.++.++.++|||||+|.+.++|++||+..+..|+|+.|.|.++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 45568999999999999999999999999999999999999999999999999999999999999558899999999999
Q ss_pred ccCCCC
Q psy1757 177 KFNPET 182 (348)
Q Consensus 177 ~~~~~~ 182 (348)
+++...
T Consensus 93 ~~~~~~ 98 (105)
T 2dh8_A 93 TPRGMQ 98 (105)
T ss_dssp CCSSCC
T ss_pred cCCCCC
Confidence 988764
No 136
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.71 E-value=2.7e-17 Score=123.37 Aligned_cols=80 Identities=20% Similarity=0.397 Sum_probs=75.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEEcccC
Q psy1757 101 CKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKRVKFN 179 (348)
Q Consensus 101 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~a~~~ 179 (348)
++|||+|||.++++++|+++|++||.|.+++++.+..++.++|||||+|.+.++|++|++.+ +..++|++|.|.+++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999889999999999999999999999986 58999999999999876
Q ss_pred C
Q psy1757 180 P 180 (348)
Q Consensus 180 ~ 180 (348)
+
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 137
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.9e-18 Score=131.66 Aligned_cols=84 Identities=21% Similarity=0.401 Sum_probs=77.2
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCcc
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPK 90 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~ 90 (348)
.....++|||+|||.++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|++||+ +++..+.|+.|.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp SHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred cCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 34467999999999999999999999999999999999998899999999999999999999997 56789999999999
Q ss_pred ccccc
Q psy1757 91 RVTKR 95 (348)
Q Consensus 91 ~a~~~ 95 (348)
++..+
T Consensus 84 ~a~~~ 88 (104)
T 1p1t_A 84 NAASE 88 (104)
T ss_dssp ETTCT
T ss_pred eCCCc
Confidence 88654
No 138
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.71 E-value=1.2e-17 Score=137.89 Aligned_cols=84 Identities=17% Similarity=0.290 Sum_probs=76.7
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCC---eeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCee
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGE---VESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKK 86 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~---v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~ 86 (348)
.+...+.++|||+|||+++|+++|+++|++||. |.+|+|++|+. ++++|||||+|.+.++|++||++++..|.++.
T Consensus 38 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~ 116 (136)
T 2hgl_A 38 GPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRY 116 (136)
T ss_dssp CSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEE
Confidence 345667899999999999999999999999999 89999999986 99999999999999999999997778999999
Q ss_pred cCcccccc
Q psy1757 87 IDPKRVTK 94 (348)
Q Consensus 87 i~v~~a~~ 94 (348)
|.|.++..
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99987743
No 139
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.70 E-value=3e-17 Score=133.32 Aligned_cols=88 Identities=26% Similarity=0.427 Sum_probs=80.3
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecC
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKID 88 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~ 88 (348)
.....+.++|||+|||.++|+++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|++||+ +++..|.|+.|.
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 3455668899999999999999999999999999999999999899999999999999999999997 578899999999
Q ss_pred ccccccccc
Q psy1757 89 PKRVTKRVN 97 (348)
Q Consensus 89 v~~a~~~~~ 97 (348)
|+++..+..
T Consensus 96 v~~a~~~~~ 104 (126)
T 3ex7_B 96 VDWCFVRGP 104 (126)
T ss_dssp EEESEESSS
T ss_pred EEEecCCCC
Confidence 999876543
No 140
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.8e-17 Score=128.61 Aligned_cols=85 Identities=18% Similarity=0.231 Sum_probs=76.9
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCc
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDP 89 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v 89 (348)
......++|||+|||.++|+++|+++|++||.|.++.++.++.+++++|||||+|.+.++|++||+. ++..|.++.|.|
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 10 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp CCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4456679999999999999999999999999999998888888999999999999999999999975 567999999999
Q ss_pred cccccc
Q psy1757 90 KRVTKR 95 (348)
Q Consensus 90 ~~a~~~ 95 (348)
+++..+
T Consensus 90 ~~a~~~ 95 (98)
T 2cqp_A 90 VLGSGP 95 (98)
T ss_dssp EESSCS
T ss_pred EEcCCC
Confidence 987643
No 141
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.1e-18 Score=136.54 Aligned_cols=84 Identities=21% Similarity=0.338 Sum_probs=75.5
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCcc
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPK 90 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~ 90 (348)
....+.++|||+|||+++|+++|+++|++||.|.++.++.+..+++++|||||+|.+.++|++||++++..|.|+.|.|.
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVH 99 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEE
Confidence 34556799999999999999999999999999998666666679999999999999999999999987889999999998
Q ss_pred cccc
Q psy1757 91 RVTK 94 (348)
Q Consensus 91 ~a~~ 94 (348)
++..
T Consensus 100 ~a~~ 103 (124)
T 1wel_A 100 PITK 103 (124)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8754
No 142
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=5.2e-17 Score=127.24 Aligned_cols=85 Identities=19% Similarity=0.366 Sum_probs=77.1
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEEc
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRV 176 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~a 176 (348)
....++|||+|||.++++++|+++|++|| |+.|+|+.++.+++++|||||+|.+.++|++|++..+..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 34568999999999999999999999996 99999999999999999999999999999999943358999999999999
Q ss_pred ccCCCC
Q psy1757 177 KFNPET 182 (348)
Q Consensus 177 ~~~~~~ 182 (348)
+++...
T Consensus 91 ~~~~~~ 96 (103)
T 2dng_A 91 EGRKQD 96 (103)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 887653
No 143
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2.3e-17 Score=129.36 Aligned_cols=85 Identities=21% Similarity=0.378 Sum_probs=78.3
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhh-cCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-Ce-eCCeEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQ-YGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QV-ICGKEVDV 173 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~-i~G~~i~v 173 (348)
....++|||+|||+++++++|+++|++ ||.|+.|+|+.+. ++.++|||||+|.+.++|++|++.++ .. |+|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 345689999999999999999999999 9999999999998 89999999999999999999999885 77 99999999
Q ss_pred EEcccCCCC
Q psy1757 174 KRVKFNPET 182 (348)
Q Consensus 174 ~~a~~~~~~ 182 (348)
.+++++...
T Consensus 85 ~~a~~~~~~ 93 (104)
T 2dhg_A 85 SVAIPKASR 93 (104)
T ss_dssp CBCCCCCSC
T ss_pred EEccCCCcC
Confidence 999877654
No 144
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.70 E-value=3.2e-17 Score=123.56 Aligned_cols=80 Identities=28% Similarity=0.550 Sum_probs=75.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEEc
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKRV 176 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~a 176 (348)
...++|||+|||.++++++|+++|++||.|+.|+++.+..+++++|+|||+|.+.++|++|++.+ +..++|++|+|+++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999999999889999999999999999999999876 58999999999987
Q ss_pred c
Q psy1757 177 K 177 (348)
Q Consensus 177 ~ 177 (348)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 145
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.70 E-value=1.3e-17 Score=128.62 Aligned_cols=83 Identities=18% Similarity=0.260 Sum_probs=73.7
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCc
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDP 89 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v 89 (348)
......++|||+|||.++|+++|+++|++||.|.++.++.++.+++++|||||+|.+.++|++||+ +++..+.++.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v 89 (95)
T 2ek1_A 10 SGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (95)
T ss_dssp -----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEE
Confidence 344557999999999999999999999999999999999988899999999999999999999998 5788999999999
Q ss_pred cccc
Q psy1757 90 KRVT 93 (348)
Q Consensus 90 ~~a~ 93 (348)
+.+.
T Consensus 90 ~~a~ 93 (95)
T 2ek1_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 8875
No 146
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=1.4e-17 Score=131.63 Aligned_cols=84 Identities=17% Similarity=0.278 Sum_probs=77.2
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCC---eeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCee
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGE---VESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKK 86 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~---v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~ 86 (348)
..+..+.++|||+|||+++|+++|+++|+.||. |.+|+|+.++. ++++|||||+|.+.++|++||++++..+.++.
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 83 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRY 83 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSC
T ss_pred cCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeE
Confidence 455678899999999999999999999999988 89999999986 99999999999999999999998888999999
Q ss_pred cCcccccc
Q psy1757 87 IDPKRVTK 94 (348)
Q Consensus 87 i~v~~a~~ 94 (348)
|.|.++..
T Consensus 84 i~V~~a~~ 91 (107)
T 2lmi_A 84 VEVYEINN 91 (107)
T ss_dssp CCCEECCH
T ss_pred EEEEECCH
Confidence 99988754
No 147
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.70 E-value=2.8e-17 Score=124.62 Aligned_cols=82 Identities=23% Similarity=0.440 Sum_probs=75.2
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCC-cceEEEEEecCHHHHHHHHH-hCCcccCCeecCccc
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQ-SRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKR 91 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~-~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~ 91 (348)
...++|||+|||.++|+++|+++|++||.|.+|+|+.++.++. ++|||||+|.+.++|++|++ +++..+.|+.|.|++
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3578999999999999999999999999999999999887766 99999999999999999999 578899999999998
Q ss_pred cccc
Q psy1757 92 VTKR 95 (348)
Q Consensus 92 a~~~ 95 (348)
+.+.
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8654
No 148
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.70 E-value=3e-17 Score=132.97 Aligned_cols=82 Identities=21% Similarity=0.517 Sum_probs=76.5
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCcccccc
Q psy1757 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVTK 94 (348)
Q Consensus 15 ~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~a~~ 94 (348)
+.++|||+|||.++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|++||++++..|.|+.|.|+++..
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 46899999999999999999999999999999999998899999999999999999999997778899999999998865
Q ss_pred cc
Q psy1757 95 RV 96 (348)
Q Consensus 95 ~~ 96 (348)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 149
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.70 E-value=4.4e-17 Score=125.99 Aligned_cols=82 Identities=18% Similarity=0.339 Sum_probs=77.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEEccc
Q psy1757 100 KCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKRVKF 178 (348)
Q Consensus 100 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~a~~ 178 (348)
+++|||+|||.++++++|+++|++||.|++|+|+.++.++.++|||||+|.+.++|++|++.+ +..++|+.|.|.++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 578999999999999999999999999999999999999999999999999999999999877 5899999999999988
Q ss_pred CCC
Q psy1757 179 NPE 181 (348)
Q Consensus 179 ~~~ 181 (348)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 754
No 150
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.70 E-value=3e-17 Score=139.83 Aligned_cols=85 Identities=18% Similarity=0.369 Sum_probs=77.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEEcc
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKRVK 177 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~a~ 177 (348)
..++|||+|||+.+++++|+++|++||.|+.|.|+.++.++.++|||||+|.+.++|++||+.+ +..|.|+.|.|.++.
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 150 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 3578999999999999999999999999999999999999999999999999999999999987 488999999999999
Q ss_pred cCCCCC
Q psy1757 178 FNPETM 183 (348)
Q Consensus 178 ~~~~~~ 183 (348)
++....
T Consensus 151 ~~~~~~ 156 (165)
T 1rk8_A 151 VKGPKR 156 (165)
T ss_dssp ECC---
T ss_pred CCCCCC
Confidence 887643
No 151
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.6e-17 Score=126.04 Aligned_cols=84 Identities=18% Similarity=0.169 Sum_probs=75.3
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHH----HHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCe
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEIN----DYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNK 85 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr 85 (348)
....+.++|||+|||.++++++|+ ++|++||+|.+|+|+.++.+ +|||||+|.+.++|++||+ +++..+.|+
T Consensus 4 ~~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr 80 (96)
T 2dgx_A 4 GSSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSK 80 (96)
T ss_dssp CCCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 344567899999999999999999 99999999999999998755 8899999999999999999 677899999
Q ss_pred ecCccccccccc
Q psy1757 86 KIDPKRVTKRVN 97 (348)
Q Consensus 86 ~i~v~~a~~~~~ 97 (348)
.|.|+++.....
T Consensus 81 ~l~V~~a~~~~~ 92 (96)
T 2dgx_A 81 KILVSLATGASG 92 (96)
T ss_dssp EEEEEECCCSSC
T ss_pred EEEEEEcCCCCC
Confidence 999999876543
No 152
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.70 E-value=6.3e-17 Score=128.24 Aligned_cols=85 Identities=18% Similarity=0.371 Sum_probs=79.3
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~ 175 (348)
....++|||+|||.++++++|+++|++||.|+.|+|+.++.++.++|||||+|.+.++|++|++.+ +..|+|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 345689999999999999999999999999999999999999999999999999999999999976 5899999999999
Q ss_pred cccCCC
Q psy1757 176 VKFNPE 181 (348)
Q Consensus 176 a~~~~~ 181 (348)
++++..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 998765
No 153
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.70 E-value=7.1e-18 Score=129.03 Aligned_cols=81 Identities=16% Similarity=0.281 Sum_probs=70.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcC--CccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEcc
Q psy1757 101 CKIFVGGLTTEITEQDVRDYFSQYG--SITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVK 177 (348)
Q Consensus 101 ~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~ 177 (348)
.+|||+|||+++++++|+++|++|| .|++|+|+.++.+++++|||||+|.+.++|++|++.++ ..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999998875 89999999999998
Q ss_pred cCCC
Q psy1757 178 FNPE 181 (348)
Q Consensus 178 ~~~~ 181 (348)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 8755
No 154
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=4.4e-17 Score=125.29 Aligned_cols=81 Identities=25% Similarity=0.433 Sum_probs=76.0
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~ 175 (348)
.+..++|||+|||.++++++|+++|++||.|+.|+|+.++.++.++|||||+|.+.++|++|++.++ ..|.|++|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 4456899999999999999999999999999999999999999999999999999999999999875 889999999999
Q ss_pred cc
Q psy1757 176 VK 177 (348)
Q Consensus 176 a~ 177 (348)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 155
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.70 E-value=8.4e-17 Score=130.43 Aligned_cols=85 Identities=19% Similarity=0.355 Sum_probs=78.4
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCc
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDP 89 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v 89 (348)
......++|||+|||.++++++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|++||+ +++..+.|+.|.|
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 455677899999999999999999999999999999999998 99999999999999999999999 6778999999999
Q ss_pred ccccccc
Q psy1757 90 KRVTKRV 96 (348)
Q Consensus 90 ~~a~~~~ 96 (348)
+++....
T Consensus 109 ~~a~~~~ 115 (124)
T 2kt5_A 109 QLVASQI 115 (124)
T ss_dssp EEECCTT
T ss_pred EEeCCCC
Confidence 9987654
No 156
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=4.9e-17 Score=126.33 Aligned_cols=85 Identities=15% Similarity=0.386 Sum_probs=78.5
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCcc-ccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeE----
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSIT-EFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKE---- 170 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~-~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~---- 170 (348)
....++|||+|||+++++++|+++|++||.|+ .|+|+.++.+++++|||||+|.+.++|++|++.++ ..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34578999999999999999999999999999 99999999999999999999999999999999875 8899999
Q ss_pred EEEEEcccCCC
Q psy1757 171 VDVKRVKFNPE 181 (348)
Q Consensus 171 i~v~~a~~~~~ 181 (348)
|+|.++++...
T Consensus 86 l~v~~a~~~~~ 96 (99)
T 2div_A 86 FKLNYATYSGP 96 (99)
T ss_dssp CCEEETTCCSS
T ss_pred EEEeecCCCCC
Confidence 99999887643
No 157
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.6e-17 Score=133.49 Aligned_cols=80 Identities=23% Similarity=0.371 Sum_probs=73.3
Q ss_pred CCCCCEEEEcCCCCcccHHHHHHHhhcCCCe----eEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecC
Q psy1757 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEV----ESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKID 88 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v----~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~ 88 (348)
..+.++|||+|||+++|+++|+++|++||.| .+|+|+.++ +++++|||||+|.+.++|++||+.+++.|.++.|.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEE
Confidence 3567999999999999999999999999985 689999985 99999999999999999999999988899999998
Q ss_pred ccccc
Q psy1757 89 PKRVT 93 (348)
Q Consensus 89 v~~a~ 93 (348)
|..+.
T Consensus 99 V~~a~ 103 (123)
T 2dha_A 99 LFRST 103 (123)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 87663
No 158
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=4.7e-17 Score=126.75 Aligned_cols=84 Identities=17% Similarity=0.356 Sum_probs=77.7
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~ 175 (348)
....++|||+|||.++++++|+++|++||.|+.|+|+.++ +++++|||||+|.+.++|++|++.++ ..|+|++|.|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999988 89999999999999999999998874 889999999999
Q ss_pred cccCCC
Q psy1757 176 VKFNPE 181 (348)
Q Consensus 176 a~~~~~ 181 (348)
++++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 988765
No 159
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3.4e-17 Score=128.23 Aligned_cols=85 Identities=21% Similarity=0.368 Sum_probs=77.9
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~ 175 (348)
....++|||+|||+++++++|+++|++||.|+.|+|+.+ ++.++|||||+|.+.++|++|++.+ +..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 345689999999999999999999999999999999987 7889999999999999999999987 4889999999999
Q ss_pred cccCCCCC
Q psy1757 176 VKFNPETM 183 (348)
Q Consensus 176 a~~~~~~~ 183 (348)
++++..+.
T Consensus 90 a~~~~~~~ 97 (103)
T 2d9p_A 90 AQRKEERQ 97 (103)
T ss_dssp CSSCCCCC
T ss_pred ecccccCC
Confidence 99887643
No 160
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.2e-16 Score=126.39 Aligned_cols=85 Identities=24% Similarity=0.452 Sum_probs=75.1
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecC
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKID 88 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~ 88 (348)
.....+.++|||+|||.++|+++|+++|++||.|++|+|+. ++.++|||||+|.+.++|++||+ +++..|.++.|.
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 44556789999999999999999999999999999999965 45689999999999999999995 577899999999
Q ss_pred ccccccccc
Q psy1757 89 PKRVTKRVN 97 (348)
Q Consensus 89 v~~a~~~~~ 97 (348)
|+++..+..
T Consensus 93 V~~a~~~~~ 101 (109)
T 1x4a_A 93 VEFPRSGRG 101 (109)
T ss_dssp EECCCCCCC
T ss_pred EEEcccCCC
Confidence 999876543
No 161
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.8e-17 Score=128.65 Aligned_cols=85 Identities=20% Similarity=0.315 Sum_probs=77.4
Q ss_pred CCCCCEEEEcCCCCcccHHHHHHHhhcCCC-eeEEEEe-eCCCCCCcceEEEEEecCHHHHHHHHHhC---CcccCCeec
Q psy1757 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGE-VESISIK-NDPYTGQSRGFAFVTYTTQKAVDDLLAAG---DHYIGNKKI 87 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~-v~~i~i~-~d~~tg~~kG~aFV~F~~~e~A~~Al~~~---~~~~~gr~i 87 (348)
..+.++|||+|||.++|+++|+++|++||. |.+|.|+ .++.++.++|||||+|.+.++|++||+.+ ...+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 456899999999999999999999999998 9999998 78888999999999999999999999964 378999999
Q ss_pred Cccccccccc
Q psy1757 88 DPKRVTKRVN 97 (348)
Q Consensus 88 ~v~~a~~~~~ 97 (348)
.|+++.++..
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999876644
No 162
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=125.40 Aligned_cols=85 Identities=24% Similarity=0.384 Sum_probs=76.3
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~ 175 (348)
....++|||+|||+++++++|+++|++||.|+.|+|+.++.+ ++|||||+|.+.++|++|++.+ +..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 445689999999999999999999999999999999988544 6899999999999999999977 5889999999999
Q ss_pred cccCCCCC
Q psy1757 176 VKFNPETM 183 (348)
Q Consensus 176 a~~~~~~~ 183 (348)
++++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2cqi_A 90 ATTPSSQK 97 (103)
T ss_dssp CCCTTCCC
T ss_pred CCCCcccc
Confidence 99876543
No 163
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.5e-17 Score=130.97 Aligned_cols=84 Identities=13% Similarity=0.165 Sum_probs=73.4
Q ss_pred CCCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhC---CcccCC
Q psy1757 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG---DHYIGN 84 (348)
Q Consensus 8 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~---~~~~~g 84 (348)
........+++|||+|||+++|+++|+++|++||.|++|+|+++ ||||||+|++.++|++||+.+ ...+.|
T Consensus 23 ~~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G 96 (119)
T 2ad9_A 23 DSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG 96 (119)
T ss_dssp CTTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTT
T ss_pred cccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 34455667899999999999999999999999999999999975 589999999999999999854 357999
Q ss_pred eecCccccccccc
Q psy1757 85 KKIDPKRVTKRVN 97 (348)
Q Consensus 85 r~i~v~~a~~~~~ 97 (348)
+.|.|.++..+..
T Consensus 97 r~l~V~~a~~k~~ 109 (119)
T 2ad9_A 97 QPIYIQFSNHKEL 109 (119)
T ss_dssp BCCEEEECSSSSC
T ss_pred eEEEEEEccCCCC
Confidence 9999999876543
No 164
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.4e-17 Score=128.18 Aligned_cols=84 Identities=23% Similarity=0.432 Sum_probs=78.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEEc
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKRV 176 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~a 176 (348)
...++|||+|||.++++++|+++|++||.|+.|.|+.++.++.++|||||+|.+.++|++|++.+ +..|.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45689999999999999999999999999999999999999999999999999999999999976 58899999999999
Q ss_pred ccCCC
Q psy1757 177 KFNPE 181 (348)
Q Consensus 177 ~~~~~ 181 (348)
+++..
T Consensus 101 ~~~~~ 105 (106)
T 1p27_B 101 FVRGP 105 (106)
T ss_dssp EESSC
T ss_pred cCCCC
Confidence 98754
No 165
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=125.81 Aligned_cols=85 Identities=13% Similarity=0.337 Sum_probs=78.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCC-ccccccC-CCCCCCccceEEEEEECCHHHHHHHHHcCC---CeeCCeEEE
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGS-ITEFQQP-FDKSKNMKKGFCFISFDDQNVADQVLKNPK---QVICGKEVD 172 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~v~i~-~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~---~~i~G~~i~ 172 (348)
...++|||+|||+++++++|+++|++||. |++|.++ .++.++.++|||||+|.+.++|++|++.++ ..++|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45689999999999999999999999998 9999998 788888999999999999999999999873 689999999
Q ss_pred EEEcccCCCC
Q psy1757 173 VKRVKFNPET 182 (348)
Q Consensus 173 v~~a~~~~~~ 182 (348)
|.+++++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999987654
No 166
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.69 E-value=2.4e-17 Score=135.95 Aligned_cols=90 Identities=26% Similarity=0.450 Sum_probs=81.4
Q ss_pred CCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeec
Q psy1757 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKI 87 (348)
Q Consensus 9 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i 87 (348)
......+.++|||+|||.++|+++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+. ++..|.|+.|
T Consensus 40 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 119 (135)
T 2lea_A 40 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 119 (135)
T ss_dssp SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 345566789999999999999999999999999999999999988999999999999999999999984 6789999999
Q ss_pred CcccccccccC
Q psy1757 88 DPKRVTKRVNP 98 (348)
Q Consensus 88 ~v~~a~~~~~~ 98 (348)
.|+++.....+
T Consensus 120 ~V~~a~~~~~~ 130 (135)
T 2lea_A 120 RVQMARYGRPP 130 (135)
T ss_dssp EEEECCCCCCC
T ss_pred EEEECCCCCCC
Confidence 99998766543
No 167
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.7e-17 Score=124.79 Aligned_cols=82 Identities=26% Similarity=0.473 Sum_probs=76.5
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~ 175 (348)
....++|||+|||.++++++|+++|++||.|+.|+++.++.+++++|||||+|.+.++|++|++.++ ..|+|++|.|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3456899999999999999999999999999999999999999999999999999999999999874 889999999999
Q ss_pred ccc
Q psy1757 176 VKF 178 (348)
Q Consensus 176 a~~ 178 (348)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 168
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.7e-17 Score=129.17 Aligned_cols=82 Identities=16% Similarity=0.221 Sum_probs=76.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCc-cccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEEc
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSI-TEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRV 176 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i-~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~a 176 (348)
...++|||+|||+++++++|+++|++||.| ..|+|+.++ +++++|||||+|.+.++|++||+..+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEC
Confidence 456899999999999999999999999999 899999998 899999999999999999999999668999999999999
Q ss_pred ccCC
Q psy1757 177 KFNP 180 (348)
Q Consensus 177 ~~~~ 180 (348)
.++.
T Consensus 92 ~~~~ 95 (114)
T 2cpy_A 92 TLED 95 (114)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8775
No 169
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=125.78 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=71.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCC-----eEE
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICG-----KEV 171 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G-----~~i 171 (348)
...++|||+|||+++++++|+++|++||.|+.|+|+.+ |||||+|.+.++|++||+.++ ..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45689999999999999999999999999999999876 699999999999999999885 88999 999
Q ss_pred EEEEcccCCCC
Q psy1757 172 DVKRVKFNPET 182 (348)
Q Consensus 172 ~v~~a~~~~~~ 182 (348)
+|++++++...
T Consensus 86 ~V~~a~~~~~~ 96 (108)
T 1x4c_A 86 RVKVDGPRSPS 96 (108)
T ss_dssp EEEESSCCSCC
T ss_pred EEEeCCCCCCC
Confidence 99999987653
No 170
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=8.8e-17 Score=124.63 Aligned_cols=84 Identities=17% Similarity=0.201 Sum_probs=77.5
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~ 175 (348)
....++|||+|||+++++++|+++|++||.|+.++++.++.+++++|||||+|.+.++|++|++.++ ..|.|+.|+|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3456899999999999999999999999999999999999999999999999999999999998885 899999999999
Q ss_pred cccCC
Q psy1757 176 VKFNP 180 (348)
Q Consensus 176 a~~~~ 180 (348)
+....
T Consensus 92 a~~~~ 96 (98)
T 2cqp_A 92 GSGPS 96 (98)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87543
No 171
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.68 E-value=1.6e-17 Score=129.88 Aligned_cols=84 Identities=27% Similarity=0.556 Sum_probs=77.1
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCcc
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPK 90 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~ 90 (348)
+.....++|||+|||.++|+++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|++||+ ++..++|+.|.|.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 4 EGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLG 81 (102)
T ss_dssp CCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEE
Confidence 345567999999999999999999999999999999999998 99999999999999999999999 7889999999988
Q ss_pred cccccc
Q psy1757 91 RVTKRV 96 (348)
Q Consensus 91 ~a~~~~ 96 (348)
++..+.
T Consensus 82 ~a~~~~ 87 (102)
T 2xs2_A 82 PAIRKQ 87 (102)
T ss_dssp EEEECC
T ss_pred ECCcCc
Confidence 886543
No 172
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3e-17 Score=128.76 Aligned_cols=81 Identities=15% Similarity=0.145 Sum_probs=73.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEEcc
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVK 177 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~a~ 177 (348)
...++|||+|||+++++++|+++|++|| +++|+|+.++ +++++|||||+|.+.++|++||+..+..|+++.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 4568999999999999999999999999 5599999988 8999999999999999999999765688999999999887
Q ss_pred cCC
Q psy1757 178 FNP 180 (348)
Q Consensus 178 ~~~ 180 (348)
...
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 173
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=124.83 Aligned_cols=85 Identities=22% Similarity=0.445 Sum_probs=76.7
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~ 175 (348)
....++|||+|||+++++++|+++|++||.|+.|+|+.+.. .++|||||+|.+.++|++|++.+ +..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44568999999999999999999999999999999998864 38999999999999999999986 5889999999999
Q ss_pred cccCCCCC
Q psy1757 176 VKFNPETM 183 (348)
Q Consensus 176 a~~~~~~~ 183 (348)
++++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2cq3_A 90 ATARVMTN 97 (103)
T ss_dssp CCSSCCCC
T ss_pred cccCCCCC
Confidence 99886643
No 174
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=124.41 Aligned_cols=82 Identities=17% Similarity=0.161 Sum_probs=72.3
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh---CCcccCCee
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA---GDHYIGNKK 86 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~---~~~~~~gr~ 86 (348)
......+++|||+|||+++|+++|+++|++||.|.+|.|+++ ||||||+|++.++|++||+. +...+.|+.
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 445567899999999999999999999999999999999875 58999999999999999984 456899999
Q ss_pred cCccccccccc
Q psy1757 87 IDPKRVTKRVN 97 (348)
Q Consensus 87 i~v~~a~~~~~ 97 (348)
|.|.++..+..
T Consensus 83 l~V~~a~~~~~ 93 (101)
T 2cq1_A 83 IYIQYSNHKEL 93 (101)
T ss_dssp CEEEECSCSSC
T ss_pred EEEEEcCcccC
Confidence 99999876543
No 175
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=126.79 Aligned_cols=74 Identities=22% Similarity=0.464 Sum_probs=66.9
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCC
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGN 84 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~g 84 (348)
.....+.++|||+|||.++|+++|+++|++||.|.+|+|+.++ ++.++|||||+|.+.++|++||+ +++..+.+
T Consensus 19 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 93 (114)
T 1x5o_A 19 KQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKT 93 (114)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCC
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcC
Confidence 3455678999999999999999999999999999999999998 99999999999999999999999 45666643
No 176
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.68 E-value=4.9e-17 Score=130.20 Aligned_cols=81 Identities=27% Similarity=0.464 Sum_probs=73.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEEccc
Q psy1757 100 KCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKRVKF 178 (348)
Q Consensus 100 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~a~~ 178 (348)
..+|||+|||+++++++|+++|++||.|++|+|+.++ +.+||||||+|.+.++|++||+.+ +..|+|++|.|.++++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4679999999999999999999999999999999885 458999999999999999999987 5899999999999987
Q ss_pred CCCC
Q psy1757 179 NPET 182 (348)
Q Consensus 179 ~~~~ 182 (348)
+..+
T Consensus 83 ~~~~ 86 (115)
T 4f25_A 83 RKER 86 (115)
T ss_dssp CCC-
T ss_pred cccc
Confidence 6543
No 177
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.68 E-value=5.3e-17 Score=119.52 Aligned_cols=75 Identities=36% Similarity=0.693 Sum_probs=70.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEEc
Q psy1757 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRV 176 (348)
Q Consensus 102 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~a 176 (348)
+|||+|||+++++++|+++|++||.|++|+++.++.+++++|||||+|.+.++|++|++..+..++|++|.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999999998999999999999999999999985568999999999875
No 178
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.1e-17 Score=122.20 Aligned_cols=76 Identities=34% Similarity=0.648 Sum_probs=73.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEEc
Q psy1757 101 CKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRV 176 (348)
Q Consensus 101 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~a 176 (348)
++|||+|||.++++++|+++|++||.|++|+++.++.+++++|+|||+|.+.++|++|++.++..++|++|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 5799999999999999999999999999999999998999999999999999999999999998899999999986
No 179
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.68 E-value=9.3e-17 Score=121.07 Aligned_cols=72 Identities=18% Similarity=0.217 Sum_probs=66.3
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCcccc
Q psy1757 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDPKRV 92 (348)
Q Consensus 15 ~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v~~a 92 (348)
.+..|||+||++.+||++|+++|.+||+|.+|++.. +||||||+|.++++|++|++. ++.++.++.|+|+.+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 578899999999999999999999999999999976 579999999999999999995 667999999988876
No 180
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=8.3e-18 Score=131.28 Aligned_cols=87 Identities=18% Similarity=0.249 Sum_probs=77.4
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCcc
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPK 90 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~ 90 (348)
......++|||+|||.++|+++|+++|++||.|.+ .++.++.+++++|||||+|.+.++|++||++++..+.|+.|.|+
T Consensus 12 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 12 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLE 90 (101)
T ss_dssp TTCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEE
Confidence 34557899999999999999999999999999988 66677778999999999999999999999977789999999999
Q ss_pred cccccccC
Q psy1757 91 RVTKRVNP 98 (348)
Q Consensus 91 ~a~~~~~~ 98 (348)
++..+...
T Consensus 91 ~a~~~~~~ 98 (101)
T 1fj7_A 91 KPKGRDGT 98 (101)
T ss_dssp CCSCCCCS
T ss_pred EcCCCCCC
Confidence 98776543
No 181
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=126.02 Aligned_cols=82 Identities=23% Similarity=0.419 Sum_probs=73.6
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~ 175 (348)
....++|||+|||.++++++|+++|++||.|+.|+|..+ +.++|||||+|.+.++|++|++.+ +..|+|+.|.|++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999999664 457899999999999999999877 4899999999999
Q ss_pred cccCCC
Q psy1757 176 VKFNPE 181 (348)
Q Consensus 176 a~~~~~ 181 (348)
++++..
T Consensus 96 a~~~~~ 101 (109)
T 1x4a_A 96 PRSGRG 101 (109)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 988654
No 182
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=132.05 Aligned_cols=83 Identities=25% Similarity=0.452 Sum_probs=75.4
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecC
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKID 88 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~ 88 (348)
.....+.++|||+|||.++|+++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+. ++..+.|+.|.
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556789999999999999999999999999999999999988999999999999999999999974 56789999998
Q ss_pred cccc
Q psy1757 89 PKRV 92 (348)
Q Consensus 89 v~~a 92 (348)
|+++
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 8764
No 183
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.68 E-value=8.1e-17 Score=126.45 Aligned_cols=84 Identities=24% Similarity=0.330 Sum_probs=77.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCC---eEEEE
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICG---KEVDV 173 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G---~~i~v 173 (348)
...++|||+|||.++++++|+++|++||.|+.|+|+.+. ++.++|||||+|.+.++|++|++.++ ..+.+ +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 457899999999999999999999999999999999987 78999999999999999999999875 67887 99999
Q ss_pred EEcccCCCC
Q psy1757 174 KRVKFNPET 182 (348)
Q Consensus 174 ~~a~~~~~~ 182 (348)
.+++++..+
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999988764
No 184
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.68 E-value=1.9e-17 Score=129.33 Aligned_cols=82 Identities=20% Similarity=0.304 Sum_probs=76.9
Q ss_pred CCceEEEcCCCC------CCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCC-eE
Q psy1757 99 LKCKIFVGGLTT------EITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICG-KE 170 (348)
Q Consensus 99 ~~~~l~V~nLp~------~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G-~~ 170 (348)
.+++|||+|||. ++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++|++.++ ..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 99999999999999999999999999999999999999999999999998874 88999 99
Q ss_pred EEEEEcccCC
Q psy1757 171 VDVKRVKFNP 180 (348)
Q Consensus 171 i~v~~a~~~~ 180 (348)
|.|.++.++.
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999998753
No 185
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.68 E-value=5.3e-17 Score=128.62 Aligned_cols=86 Identities=27% Similarity=0.459 Sum_probs=79.3
Q ss_pred cccCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEE
Q psy1757 95 RVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDV 173 (348)
Q Consensus 95 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v 173 (348)
+.....++|||+|||..+++++|+++|++||.|+.|+|+.++.+++++|||||+|.+.++|++|++.+ +..|.|++|.|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999976 58899999999
Q ss_pred EEcccCC
Q psy1757 174 KRVKFNP 180 (348)
Q Consensus 174 ~~a~~~~ 180 (348)
++++++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9998764
No 186
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=4.8e-17 Score=119.72 Aligned_cols=75 Identities=29% Similarity=0.747 Sum_probs=71.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEEc
Q psy1757 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRV 176 (348)
Q Consensus 102 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~a 176 (348)
+|||+|||.++++++|+++|++||.|++|.++.++.++.++|||||+|.+.++|++|++..++.++|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999999999999999999999999999998778999999999875
No 187
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.68 E-value=1.2e-16 Score=121.56 Aligned_cols=81 Identities=23% Similarity=0.398 Sum_probs=75.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEEcccC
Q psy1757 100 KCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFN 179 (348)
Q Consensus 100 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~a~~~ 179 (348)
.++|||+|||.++++++|+++|++||.|+.|+++.++.+++++|||||+|.+.++|++|+...+..+.|+.|.|.+++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccCC
Confidence 47899999999999999999999999999999999988999999999999999999999933468999999999999875
Q ss_pred C
Q psy1757 180 P 180 (348)
Q Consensus 180 ~ 180 (348)
.
T Consensus 86 ~ 86 (89)
T 3ucg_A 86 R 86 (89)
T ss_dssp S
T ss_pred C
Confidence 4
No 188
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.67 E-value=2.3e-17 Score=136.55 Aligned_cols=84 Identities=17% Similarity=0.215 Sum_probs=73.6
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCcc
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPK 90 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~ 90 (348)
......++|||+|||+++|+++|+++|++|| |++|+|++|+. ++++|||||+|++.++|++||+++++.|.++.|.|.
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 118 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEE
Confidence 3456678999999999999999999999999 67999999974 999999999999999999999777889999999998
Q ss_pred cccccc
Q psy1757 91 RVTKRV 96 (348)
Q Consensus 91 ~a~~~~ 96 (348)
.+....
T Consensus 119 ~a~~~~ 124 (139)
T 2hgn_A 119 LNSTTG 124 (139)
T ss_dssp ECCCSC
T ss_pred ECCCCC
Confidence 876543
No 189
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.6e-17 Score=127.39 Aligned_cols=81 Identities=16% Similarity=0.217 Sum_probs=72.4
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC--C-CeeCCeEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP--K-QVICGKEVDV 173 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~--~-~~i~G~~i~v 173 (348)
....++|||+|||+++++++|+++|++||.|++|+|+++ ||||||+|++.++|++|++.+ + ..|.|++|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345789999999999999999999999999999999875 689999999999999999965 2 6899999999
Q ss_pred EEcccCCCCC
Q psy1757 174 KRVKFNPETM 183 (348)
Q Consensus 174 ~~a~~~~~~~ 183 (348)
.+++.+....
T Consensus 87 ~~A~~~~~~~ 96 (105)
T 1sjq_A 87 QFSNHKELKT 96 (105)
T ss_dssp CCCSSSSCCC
T ss_pred EEcCCCCCCc
Confidence 9998876543
No 190
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.67 E-value=8.4e-17 Score=121.99 Aligned_cols=83 Identities=25% Similarity=0.483 Sum_probs=75.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCc-cceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEEc
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNM-KKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKRV 176 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~-~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~a 176 (348)
..++|||+|||.++++++|+++|++||.|+.|+++.+..++. ++|+|||+|.+.++|++|++.+ +..++|+.|.|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457899999999999999999999999999999999887766 8999999999999999999976 58999999999999
Q ss_pred ccCCC
Q psy1757 177 KFNPE 181 (348)
Q Consensus 177 ~~~~~ 181 (348)
.+...
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 77543
No 191
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.67 E-value=9.2e-17 Score=124.96 Aligned_cols=83 Identities=11% Similarity=0.154 Sum_probs=70.0
Q ss_pred CCCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCC---cccCC
Q psy1757 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGD---HYIGN 84 (348)
Q Consensus 8 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~---~~~~g 84 (348)
++......+++|||+|||.++|+++|+++|++||.|.+|+|+++ ||||||+|++.++|++|++..+ ..+.|
T Consensus 13 ~~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~G 86 (100)
T 3r27_A 13 DDPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAG 86 (100)
T ss_dssp ----CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETT
T ss_pred cccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCC
Confidence 44556678899999999999999999999999999999999864 5899999999999999998533 35889
Q ss_pred eecCcccccccc
Q psy1757 85 KKIDPKRVTKRV 96 (348)
Q Consensus 85 r~i~v~~a~~~~ 96 (348)
+.|.|.+++.++
T Consensus 87 r~i~V~~S~~k~ 98 (100)
T 3r27_A 87 HPAFVNYSTSQK 98 (100)
T ss_dssp EEEEEEECSCSC
T ss_pred cEEEEEeccccc
Confidence 999999987653
No 192
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.1e-17 Score=127.67 Aligned_cols=80 Identities=18% Similarity=0.288 Sum_probs=74.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEEcc
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVK 177 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~a~ 177 (348)
...++|||+|||+++|+++|+++|++||.|++|+|+++.. ++++|||||+|.+.++|++|++..++.|+|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 3468999999999999999999999999999999999987 999999999999999999999954689999999999877
Q ss_pred c
Q psy1757 178 F 178 (348)
Q Consensus 178 ~ 178 (348)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 5
No 193
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.67 E-value=1.5e-16 Score=134.27 Aligned_cols=87 Identities=24% Similarity=0.403 Sum_probs=79.4
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCc
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDP 89 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v 89 (348)
......++|||+|||.++|+++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++||+. ++..+.|+.|.|
T Consensus 65 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 144 (158)
T 2kn4_A 65 MDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 144 (158)
T ss_dssp CCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3445679999999999999999999999999999999999988999999999999999999999985 678999999999
Q ss_pred cccccccc
Q psy1757 90 KRVTKRVN 97 (348)
Q Consensus 90 ~~a~~~~~ 97 (348)
+++..+..
T Consensus 145 ~~a~~~~~ 152 (158)
T 2kn4_A 145 QMARYGRP 152 (158)
T ss_dssp EEECCSSC
T ss_pred EECCCCCC
Confidence 99876543
No 194
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1e-16 Score=127.56 Aligned_cols=86 Identities=17% Similarity=0.341 Sum_probs=76.9
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHH---HHhhcCCCeeEEEEeeCCCCC---CcceEEEEEecCHHHHHHHHHh-CCcccC
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEIN---DYFSQYGEVESISIKNDPYTG---QSRGFAFVTYTTQKAVDDLLAA-GDHYIG 83 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~---~~F~~~G~v~~i~i~~d~~tg---~~kG~aFV~F~~~e~A~~Al~~-~~~~~~ 83 (348)
......++|||+|||+++++++|+ ++|++||+|.+|+|++++.++ +++|||||+|.+.++|++||+. ++..|.
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 345568999999999999999999 999999999999999987654 5669999999999999999995 788999
Q ss_pred CeecCcccccccc
Q psy1757 84 NKKIDPKRVTKRV 96 (348)
Q Consensus 84 gr~i~v~~a~~~~ 96 (348)
|+.|.|+++..+.
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999987654
No 195
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=9.4e-17 Score=127.32 Aligned_cols=85 Identities=20% Similarity=0.399 Sum_probs=76.4
Q ss_pred CCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeec
Q psy1757 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKI 87 (348)
Q Consensus 9 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i 87 (348)
......+.++|||+|||.++|+++|+++|++||.|++|+|++++ +.++|||||+|.+.++|++|++ +++..++|+.|
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34556778999999999999999999999999999999999885 4589999999999999999999 57789999999
Q ss_pred Cccccccc
Q psy1757 88 DPKRVTKR 95 (348)
Q Consensus 88 ~v~~a~~~ 95 (348)
.|+++..+
T Consensus 100 ~V~~a~~~ 107 (109)
T 2err_A 100 EVNNATAR 107 (109)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99988654
No 196
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.3e-16 Score=124.82 Aligned_cols=84 Identities=19% Similarity=0.247 Sum_probs=76.5
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~ 175 (348)
....++|||+|||.++++++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|++|++.+ +..|+|+.|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3456899999999999999999999999999999999887 5889999999999999999999976 5899999999999
Q ss_pred cccCCC
Q psy1757 176 VKFNPE 181 (348)
Q Consensus 176 a~~~~~ 181 (348)
++....
T Consensus 91 a~~~~~ 96 (114)
T 2do0_A 91 DERALP 96 (114)
T ss_dssp CSCCCC
T ss_pred cccCCC
Confidence 876544
No 197
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=2.5e-17 Score=125.73 Aligned_cols=79 Identities=23% Similarity=0.458 Sum_probs=71.5
Q ss_pred CEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCccccccc
Q psy1757 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDPKRVTKR 95 (348)
Q Consensus 17 ~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v~~a~~~ 95 (348)
++|||+|||.++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.+ |++|++. ++..+.|+.|.|+++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999989999999999999999 9999985 667899999999998765
Q ss_pred c
Q psy1757 96 V 96 (348)
Q Consensus 96 ~ 96 (348)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 198
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.67 E-value=7.1e-17 Score=129.57 Aligned_cols=81 Identities=27% Similarity=0.465 Sum_probs=75.2
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~ 175 (348)
....++|||+|||+++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++|++.+ +..|+|++|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 345689999999999999999999999999999999999999999999999999999999999987 4889999999998
Q ss_pred cc
Q psy1757 176 VK 177 (348)
Q Consensus 176 a~ 177 (348)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 199
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.6e-16 Score=124.90 Aligned_cols=83 Identities=18% Similarity=0.322 Sum_probs=75.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccc-cccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEEc
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITE-FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRV 176 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~a 176 (348)
...++|||+|||+++++++|+++|++||.|++ |+|+.+ .+++++|||||+|.+.++|++||+..+..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 45689999999999999999999999999987 888888 7899999999999999999999999668999999999998
Q ss_pred ccCCC
Q psy1757 177 KFNPE 181 (348)
Q Consensus 177 ~~~~~ 181 (348)
..++-
T Consensus 92 ~~~~~ 96 (104)
T 1wg5_A 92 SRAEV 96 (104)
T ss_dssp CTTTS
T ss_pred CHHHH
Confidence 76654
No 200
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-16 Score=124.30 Aligned_cols=80 Identities=13% Similarity=0.109 Sum_probs=70.5
Q ss_pred CCCCCCCCEEEEcCCCC-cccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhC---CcccCCe
Q psy1757 10 GPGRNDERKLFVGGLHR-NTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG---DHYIGNK 85 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~---~~~~~gr 85 (348)
....+++++|||+|||+ ++|+++|+++|++||.|.+|+|++++ |||||+|++.++|++||+.+ ...+.|+
T Consensus 9 ~~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 82 (102)
T 1x4d_A 9 KGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGK 82 (102)
T ss_dssp CCCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred CCCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCc
Confidence 34456789999999999 99999999999999999999998764 79999999999999999853 3469999
Q ss_pred ecCccccccc
Q psy1757 86 KIDPKRVTKR 95 (348)
Q Consensus 86 ~i~v~~a~~~ 95 (348)
.|.|.++...
T Consensus 83 ~l~V~~a~~~ 92 (102)
T 1x4d_A 83 PVRVHLSQKY 92 (102)
T ss_dssp ECEEEEECCC
T ss_pred EEEEEECCCC
Confidence 9999998754
No 201
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.2e-16 Score=122.16 Aligned_cols=81 Identities=9% Similarity=0.106 Sum_probs=74.1
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEE
Q psy1757 98 PLKCKIFVGGLTTEITEQDVR----DYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVD 172 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~ 172 (348)
...++|||+|||+++++++|+ ++|++||.|++|+|+.++.+ +|||||+|.+.++|++|++.++ ..|+|++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 345889999999999999999 99999999999999998765 8899999999999999999875 889999999
Q ss_pred EEEcccCCC
Q psy1757 173 VKRVKFNPE 181 (348)
Q Consensus 173 v~~a~~~~~ 181 (348)
|+++++...
T Consensus 84 V~~a~~~~~ 92 (96)
T 2dgx_A 84 VSLATGASG 92 (96)
T ss_dssp EEECCCSSC
T ss_pred EEEcCCCCC
Confidence 999987654
No 202
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.67 E-value=7.7e-17 Score=132.96 Aligned_cols=83 Identities=12% Similarity=0.220 Sum_probs=75.2
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCC---ccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGS---ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDV 173 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v 173 (348)
....++|||+|||+++|+++|+++|++||. |++|+|++++. ++++|||||+|.+.++|++||+..+..|+|+.|+|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEE
Confidence 345689999999999999999999999999 89999999987 99999999999999999999993348899999999
Q ss_pred EEcccCC
Q psy1757 174 KRVKFNP 180 (348)
Q Consensus 174 ~~a~~~~ 180 (348)
.++.+++
T Consensus 120 ~~a~~~e 126 (136)
T 2hgl_A 120 FKSHRTE 126 (136)
T ss_dssp EECCHHH
T ss_pred EECChHH
Confidence 9987653
No 203
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.67 E-value=4.2e-16 Score=122.07 Aligned_cols=79 Identities=20% Similarity=0.353 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEEc
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKRV 176 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~a 176 (348)
...++|||+|||+++++++|+++|++||.|+.|+|++ +||||+|.+.++|++|++.+ +..|+|+.|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 4568999999999999999999999999999999873 49999999999999999986 58899999999999
Q ss_pred ccCCCCCC
Q psy1757 177 KFNPETMG 184 (348)
Q Consensus 177 ~~~~~~~~ 184 (348)
+++.....
T Consensus 81 ~~~~~~~~ 88 (103)
T 2dgu_A 81 KPPDQKRK 88 (103)
T ss_dssp CCCCCCCC
T ss_pred CCCcccch
Confidence 98876543
No 204
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.67 E-value=7.1e-17 Score=144.90 Aligned_cols=80 Identities=20% Similarity=0.340 Sum_probs=73.6
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhcCC--CeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCccc
Q psy1757 15 DERKLFVGGLHRNTGEKEINDYFSQYG--EVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDPKR 91 (348)
Q Consensus 15 ~~~~lfVgnLp~~~te~~L~~~F~~~G--~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v~~ 91 (348)
..++|||+||++++|+++|+++|++|| .|++|+|++|+.++++||||||+|.+.++|++||+. +++.|.++.|.|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999994 66899999999998
Q ss_pred ccc
Q psy1757 92 VTK 94 (348)
Q Consensus 92 a~~ 94 (348)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 754
No 205
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.67 E-value=9.7e-17 Score=123.60 Aligned_cols=81 Identities=17% Similarity=0.236 Sum_probs=74.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEEc
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKRV 176 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~a 176 (348)
+..++|||+|||+++++++|+++|++||.|+.++++.++.+++++|||||+|.+.++|++|++.+ +..|+|++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 44689999999999999999999999999999999999999999999999999999999999976 58999999999987
Q ss_pred cc
Q psy1757 177 KF 178 (348)
Q Consensus 177 ~~ 178 (348)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 206
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.66 E-value=1.2e-16 Score=134.99 Aligned_cols=81 Identities=19% Similarity=0.361 Sum_probs=75.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcC--CccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEE
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQYG--SITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKR 175 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~ 175 (348)
..++|||+||++++++++|+++|++|| .|++|+|+.|+.+++++|||||+|.+.++|++||+.++ ..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 458999999999999999999999999 99999999999999999999999999999999999985 899999999999
Q ss_pred cccC
Q psy1757 176 VKFN 179 (348)
Q Consensus 176 a~~~ 179 (348)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8764
No 207
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.66 E-value=6.5e-17 Score=132.48 Aligned_cols=85 Identities=21% Similarity=0.306 Sum_probs=77.6
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccc--cccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-C----eeCCe
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITE--FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-Q----VICGK 169 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~----~i~G~ 169 (348)
....++|||+|||+++++++|+++|++||.|+. |+|++|+.++++||||||+|.+. +|++|++.++ . .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345689999999999999999999999999966 99999999999999999999999 9999999885 6 89999
Q ss_pred EEEEEEcccCCCC
Q psy1757 170 EVDVKRVKFNPET 182 (348)
Q Consensus 170 ~i~v~~a~~~~~~ 182 (348)
.|.|++++++...
T Consensus 99 ~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 99 TINVEFAKGSKRD 111 (131)
T ss_dssp CCCCEECCCSCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999886543
No 208
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.3e-16 Score=119.73 Aligned_cols=82 Identities=20% Similarity=0.370 Sum_probs=75.6
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~ 175 (348)
....++|||+|||+++++++|+++|++| .|+.|+|+.+ .+++++|+|||+|.+.++|++|++ + +..|+|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3456899999999999999999999999 9999999998 789999999999999999999999 6 5889999999999
Q ss_pred cccCCC
Q psy1757 176 VKFNPE 181 (348)
Q Consensus 176 a~~~~~ 181 (348)
+++++.
T Consensus 84 a~~~~~ 89 (91)
T 2dgw_A 84 EKSGPS 89 (91)
T ss_dssp ESSCCC
T ss_pred CCcCCC
Confidence 988754
No 209
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.66 E-value=1.2e-16 Score=124.31 Aligned_cols=81 Identities=28% Similarity=0.377 Sum_probs=75.4
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccc--------cccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeC
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITE--------FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVIC 167 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~ 167 (348)
....++|||+|||.++++++|+++|++||.|+. |+|+.++.+++++|||||+|.+.++|++|++.+ +..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 445689999999999999999999999999999 999999999999999999999999999999976 58899
Q ss_pred CeEEEEEEcc
Q psy1757 168 GKEVDVKRVK 177 (348)
Q Consensus 168 G~~i~v~~a~ 177 (348)
|+.|+|++++
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999874
No 210
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.3e-16 Score=123.06 Aligned_cols=84 Identities=15% Similarity=0.332 Sum_probs=73.9
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecC
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKID 88 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~ 88 (348)
.....+.++|||+|||.++|+++|+++|++||.| +|+.+ .+++++|||||+|.+.++|++||+ +++..|.++.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 84 (101)
T 2fc9_A 9 STWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 84 (101)
T ss_dssp CCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 3456678999999999999999999999999977 56666 589999999999999999999999 567899999999
Q ss_pred ccccccccc
Q psy1757 89 PKRVTKRVN 97 (348)
Q Consensus 89 v~~a~~~~~ 97 (348)
|+++..+..
T Consensus 85 v~~a~~~~~ 93 (101)
T 2fc9_A 85 LELQGPRGS 93 (101)
T ss_dssp EEECSSCCC
T ss_pred EEEcCCCCC
Confidence 999876543
No 211
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.66 E-value=5.3e-17 Score=132.79 Aligned_cols=85 Identities=25% Similarity=0.436 Sum_probs=79.0
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~ 175 (348)
....++|||+|||.++++++|+++|++||.|+.|+|+.++.+++++|||||+|.+.++|++||+.+ +..|+|++|.|++
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 445689999999999999999999999999999999999999999999999999999999999987 4889999999999
Q ss_pred cccCCC
Q psy1757 176 VKFNPE 181 (348)
Q Consensus 176 a~~~~~ 181 (348)
++++..
T Consensus 123 a~~~~p 128 (129)
T 2kxn_B 123 SITKRP 128 (129)
T ss_dssp CSSSSC
T ss_pred ecCCCC
Confidence 988754
No 212
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.66 E-value=1.2e-16 Score=122.98 Aligned_cols=81 Identities=20% Similarity=0.325 Sum_probs=74.5
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~ 175 (348)
....++|||+|||+++++++|+++|++||.|++|+|+.++. ++++|||||+|.+.++|++|++.+ +..|+|++|.|++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34568999999999999999999999999999999999876 889999999999999999999976 5899999999998
Q ss_pred ccc
Q psy1757 176 VKF 178 (348)
Q Consensus 176 a~~ 178 (348)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 763
No 213
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.66 E-value=1.7e-16 Score=118.72 Aligned_cols=72 Identities=14% Similarity=0.307 Sum_probs=65.3
Q ss_pred CCEEEEcCCCCcc------cHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCe-ec
Q psy1757 16 ERKLFVGGLHRNT------GEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNK-KI 87 (348)
Q Consensus 16 ~~~lfVgnLp~~~------te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr-~i 87 (348)
+++|||+|||.++ |+++|+++|++||+|.+|+|+ +.+++++|||||+|.+.++|++||+. ++..+.|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 789999999999999999987 35899999999999999999999995 66788898 77
Q ss_pred Cc
Q psy1757 88 DP 89 (348)
Q Consensus 88 ~v 89 (348)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 214
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.1e-16 Score=122.43 Aligned_cols=86 Identities=23% Similarity=0.380 Sum_probs=76.5
Q ss_pred CCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeec
Q psy1757 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKI 87 (348)
Q Consensus 9 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i 87 (348)
........++|||+|||.++|+++|+++|+.| .+|+++.++.+++++|||||+|.+.++|++||+ +++..|.++.|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2fc8_A 8 PNARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 84 (102)
T ss_dssp TSSSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 34556788999999999999999999999977 478888888899999999999999999999998 57889999999
Q ss_pred Cccccccccc
Q psy1757 88 DPKRVTKRVN 97 (348)
Q Consensus 88 ~v~~a~~~~~ 97 (348)
.|+++.++..
T Consensus 85 ~V~~a~~~~~ 94 (102)
T 2fc8_A 85 TLDWAKPKGE 94 (102)
T ss_dssp EEEECCCCCS
T ss_pred EEEEecCCCC
Confidence 9999876643
No 215
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.66 E-value=3e-16 Score=133.64 Aligned_cols=86 Identities=28% Similarity=0.397 Sum_probs=78.2
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCc
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDP 89 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v 89 (348)
....+.++|||+|||.++|+++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|++||+ +++..|.|+.|.|
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 146 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 344567889999999999999999999999999999999999999999999999999999999998 5778999999999
Q ss_pred ccccccc
Q psy1757 90 KRVTKRV 96 (348)
Q Consensus 90 ~~a~~~~ 96 (348)
.++..+.
T Consensus 147 ~~a~~~~ 153 (165)
T 1rk8_A 147 DWCFVKG 153 (165)
T ss_dssp EESEECC
T ss_pred EEecCCC
Confidence 9987654
No 216
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=6.1e-16 Score=121.65 Aligned_cols=80 Identities=13% Similarity=0.170 Sum_probs=70.4
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhC---CcccCCeec
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG---DHYIGNKKI 87 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~---~~~~~gr~i 87 (348)
.....+++|||+|||+++|+++|+++|++||.|.+|.|+++ ||||||+|++.++|++|++.+ ...+.|+.|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 44567899999999999999999999999999999999864 589999999999999999852 346999999
Q ss_pred Ccccccccc
Q psy1757 88 DPKRVTKRV 96 (348)
Q Consensus 88 ~v~~a~~~~ 96 (348)
.|.++..+.
T Consensus 84 ~V~~a~~~~ 92 (104)
T 1wex_A 84 FFNYSTSKR 92 (104)
T ss_dssp EEEECSSSS
T ss_pred EEEEccCcc
Confidence 999987654
No 217
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.7e-17 Score=129.37 Aligned_cols=82 Identities=18% Similarity=0.330 Sum_probs=76.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEEcccC
Q psy1757 100 KCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFN 179 (348)
Q Consensus 100 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~a~~~ 179 (348)
.++|||+|||.++++++|+++|++||.|+.|+|+.++.++.++|||||+|.+.++|++||...+..|+|+.|.|.+++++
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCCC
Confidence 48999999999999999999999999999999999999999999999999999999999933468999999999999887
Q ss_pred CC
Q psy1757 180 PE 181 (348)
Q Consensus 180 ~~ 181 (348)
..
T Consensus 105 ~~ 106 (114)
T 2cq4_A 105 KN 106 (114)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 218
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.3e-16 Score=121.44 Aligned_cols=81 Identities=19% Similarity=0.299 Sum_probs=71.8
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~ 175 (348)
....++|||+|||+++++++|+++|++||.| +++.+ .+++++|||||+|.+.++|++|++.++ ..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4457899999999999999999999999987 45555 568899999999999999999999875 889999999999
Q ss_pred cccCCC
Q psy1757 176 VKFNPE 181 (348)
Q Consensus 176 a~~~~~ 181 (348)
++++..
T Consensus 88 a~~~~~ 93 (101)
T 2fc9_A 88 QGPRGS 93 (101)
T ss_dssp CSSCCC
T ss_pred cCCCCC
Confidence 988754
No 219
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=124.59 Aligned_cols=83 Identities=13% Similarity=0.245 Sum_probs=73.7
Q ss_pred CCCCCCCEEEEcCCCCcc------cHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccC
Q psy1757 11 PGRNDERKLFVGGLHRNT------GEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIG 83 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~------te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~ 83 (348)
.....+++|||+|||.++ |+++|+++|++||.|.+|+|+ +.+++++|||||+|.+.++|++||+. ++..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 344557999999999999 889999999999999999988 35899999999999999999999995 678999
Q ss_pred Ce-ecCccccccc
Q psy1757 84 NK-KIDPKRVTKR 95 (348)
Q Consensus 84 gr-~i~v~~a~~~ 95 (348)
|+ .|.|.++...
T Consensus 88 g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 88 KQHTFRVNLFTDF 100 (105)
T ss_dssp TTCEEEEECSCCC
T ss_pred CCceEEEEEcchH
Confidence 98 9999988643
No 220
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.4e-16 Score=123.06 Aligned_cols=82 Identities=23% Similarity=0.357 Sum_probs=73.7
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~ 175 (348)
....++|||+|||+++++++|+++|+.| ..|+++.++.++.++|||||+|.+.++|++||+.+ +..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4456899999999999999999999977 46777788888999999999999999999999976 5899999999999
Q ss_pred cccCCC
Q psy1757 176 VKFNPE 181 (348)
Q Consensus 176 a~~~~~ 181 (348)
++++..
T Consensus 89 a~~~~~ 94 (102)
T 2fc8_A 89 AKPKGE 94 (102)
T ss_dssp CCCCCS
T ss_pred ecCCCC
Confidence 998765
No 221
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=4.5e-16 Score=123.06 Aligned_cols=81 Identities=19% Similarity=0.277 Sum_probs=72.1
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCC----
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGN---- 84 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~g---- 84 (348)
.+.....++|||+|||.++|+++|+++|++||+|++|+|+.+ |||||+|.+.++|++||+. ++..|.+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~ 81 (108)
T 1x4c_A 9 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 81 (108)
T ss_dssp CCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCc
Confidence 344567899999999999999999999999999999999886 7999999999999999994 6678988
Q ss_pred -eecCccccccccc
Q psy1757 85 -KKIDPKRVTKRVN 97 (348)
Q Consensus 85 -r~i~v~~a~~~~~ 97 (348)
+.|.|+++.++..
T Consensus 82 ~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 82 TAYIRVKVDGPRSP 95 (108)
T ss_dssp EEEEEEEESSCCSC
T ss_pred ceEEEEEeCCCCCC
Confidence 9999999876543
No 222
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.65 E-value=1.7e-16 Score=121.49 Aligned_cols=84 Identities=21% Similarity=0.379 Sum_probs=76.1
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~ 175 (348)
....++|||+|||.++++++|+++|++||.|+.|+|..+ +++++|||||+|.+.++|++|++.+ +..|+|+.|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345689999999999999999999999999999999874 6889999999999999999999987 4889999999999
Q ss_pred cccCCCC
Q psy1757 176 VKFNPET 182 (348)
Q Consensus 176 a~~~~~~ 182 (348)
+++....
T Consensus 83 a~~~~~~ 89 (92)
T 2dgv_A 83 DRNASGP 89 (92)
T ss_dssp CSCCSSC
T ss_pred cCCCCCC
Confidence 9887653
No 223
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=8.5e-18 Score=134.72 Aligned_cols=85 Identities=27% Similarity=0.352 Sum_probs=78.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccc--------cccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCC
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITE--------FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICG 168 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G 168 (348)
...++|||+|||.++++++|+++|++||.|+. |+|+.++.+++++|||||+|.+.++|++|++.++ ..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45689999999999999999999999999998 9999998899999999999999999999999875 88999
Q ss_pred eEEEEEEcccCCCC
Q psy1757 169 KEVDVKRVKFNPET 182 (348)
Q Consensus 169 ~~i~v~~a~~~~~~ 182 (348)
++|.|.+++++...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999987653
No 224
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=8.9e-17 Score=125.38 Aligned_cols=83 Identities=14% Similarity=0.282 Sum_probs=75.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEEc
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKRV 176 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~a 176 (348)
...++|||+|||.++++++|+++|++||.|.. .++.+..+++++|||||+|.+.++|++|++ + +..|.|+.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35689999999999999999999999999988 777888888999999999999999999999 6 58899999999999
Q ss_pred ccCCCC
Q psy1757 177 KFNPET 182 (348)
Q Consensus 177 ~~~~~~ 182 (348)
+++..+
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 887653
No 225
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6.2e-16 Score=118.00 Aligned_cols=78 Identities=27% Similarity=0.467 Sum_probs=70.7
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCcc
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPK 90 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~ 90 (348)
...+.++|||+|||.++|+++|+++|++||+|.+|+|+ +|||||+|.+.++|++||+ +++..+.++.|.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 45678999999999999999999999999999999998 4799999999999999997 56779999999999
Q ss_pred ccccccc
Q psy1757 91 RVTKRVN 97 (348)
Q Consensus 91 ~a~~~~~ 97 (348)
++..+..
T Consensus 76 ~a~~~~~ 82 (90)
T 2dnq_A 76 ASKNKSK 82 (90)
T ss_dssp CSSCCCC
T ss_pred ECCCCCC
Confidence 9876644
No 226
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.5e-16 Score=126.54 Aligned_cols=83 Identities=17% Similarity=0.261 Sum_probs=75.5
Q ss_pred CCceEEEcCCCCCCCHHHHH---HHHhhcCCccccccCCCCCCC---ccceEEEEEECCHHHHHHHHHcC-CCeeCCeEE
Q psy1757 99 LKCKIFVGGLTTEITEQDVR---DYFSQYGSITEFQQPFDKSKN---MKKGFCFISFDDQNVADQVLKNP-KQVICGKEV 171 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~---~~F~~~G~i~~v~i~~~~~~g---~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i 171 (348)
..++|||+|||+++++++|+ ++|++||.|++|+|+.+..++ +++|||||+|.+.++|++|++.+ +..|+|++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 46789999999999999999 999999999999999887644 55699999999999999999987 488999999
Q ss_pred EEEEcccCCC
Q psy1757 172 DVKRVKFNPE 181 (348)
Q Consensus 172 ~v~~a~~~~~ 181 (348)
.|.+++++..
T Consensus 94 ~V~~a~~k~~ 103 (111)
T 2cpi_A 94 KASLGTTKYC 103 (111)
T ss_dssp EEESCCCCSC
T ss_pred EEEecccccc
Confidence 9999998864
No 227
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=5.5e-16 Score=120.85 Aligned_cols=77 Identities=10% Similarity=0.248 Sum_probs=69.6
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCcc
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPK 90 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~ 90 (348)
.....++|||+|||.++|+++|+++|++||.|.+|+|.+ ++|||||+|.+.++|++||+ +++..++|+.|.|+
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345679999999999999999999999999999999984 46899999999999999997 47789999999999
Q ss_pred cccc
Q psy1757 91 RVTK 94 (348)
Q Consensus 91 ~a~~ 94 (348)
++.+
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 9864
No 228
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.65 E-value=3.1e-16 Score=123.52 Aligned_cols=80 Identities=16% Similarity=0.355 Sum_probs=74.8
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~ 175 (348)
....++|||+|||+.+++++|+++|++||.|+.|+|+.+. +++++|||||+|.+.++|++|++.+ +..|.|+.|.|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456899999999999999999999999999999999998 8999999999999999999999986 5899999999998
Q ss_pred cc
Q psy1757 176 VK 177 (348)
Q Consensus 176 a~ 177 (348)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 229
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.5e-16 Score=124.60 Aligned_cols=83 Identities=25% Similarity=0.504 Sum_probs=77.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEcc
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVK 177 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~ 177 (348)
..++|||+|||.++++++|+++|++||.|+.|+++.++.++.++|||||+|.+.++|++|++.++ ..|.|+.|.|.+++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 35789999999999999999999999999999999998899999999999999999999999875 88999999999998
Q ss_pred cCCC
Q psy1757 178 FNPE 181 (348)
Q Consensus 178 ~~~~ 181 (348)
++..
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 7754
No 230
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.3e-16 Score=125.96 Aligned_cols=85 Identities=19% Similarity=0.273 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEc
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRV 176 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a 176 (348)
...++|||+|||.++++++|+++|++||.|+.+.+..+..+++++|||||+|.+.++|++|++.++ ..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 456899999999999999999999999999877666555578899999999999999999999874 8899999999999
Q ss_pred ccCCCC
Q psy1757 177 KFNPET 182 (348)
Q Consensus 177 ~~~~~~ 182 (348)
+++...
T Consensus 103 ~~~~~~ 108 (115)
T 2cpx_A 103 KNKKQR 108 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCC
Confidence 987664
No 231
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.65 E-value=3.1e-16 Score=126.88 Aligned_cols=81 Identities=28% Similarity=0.443 Sum_probs=75.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEEccc
Q psy1757 100 KCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKRVKF 178 (348)
Q Consensus 100 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~a~~ 178 (348)
.++|||+|||.++++++|+++|++||.|++|+|+.++.++.++|||||+|.+.++|++|+ .+ +..|+|+.|.|.++++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 589999999999999999999999999999999999889999999999999999999999 55 5899999999999986
Q ss_pred CCC
Q psy1757 179 NPE 181 (348)
Q Consensus 179 ~~~ 181 (348)
...
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 544
No 232
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6.6e-16 Score=116.36 Aligned_cols=78 Identities=21% Similarity=0.431 Sum_probs=70.1
Q ss_pred CCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh--CCcccCCee
Q psy1757 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA--GDHYIGNKK 86 (348)
Q Consensus 9 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~--~~~~~~gr~ 86 (348)
........++|||+|||.++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|++|++. ++..+.|+.
T Consensus 5 ~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 5 SSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp CCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 3445567899999999999999999999999999999999874 58999999999999999995 567999999
Q ss_pred cCcccc
Q psy1757 87 IDPKRV 92 (348)
Q Consensus 87 i~v~~a 92 (348)
|.|+++
T Consensus 79 l~v~~a 84 (85)
T 2ytc_A 79 LNVKWG 84 (85)
T ss_dssp CCEEEC
T ss_pred EEEEec
Confidence 999876
No 233
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=8.1e-16 Score=119.02 Aligned_cols=81 Identities=21% Similarity=0.375 Sum_probs=71.9
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccC--Cee
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIG--NKK 86 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~--gr~ 86 (348)
.......++|||+|||.++|+++|+++|++||.|++|+|+.+ +|||||+|.+.++|++||+ +++..+. ++.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~ 84 (97)
T 1why_A 11 YGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRR 84 (97)
T ss_dssp CCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCB
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcE
Confidence 344567799999999999999999999999999999999864 5899999999999999998 5778899 999
Q ss_pred cCcccccccc
Q psy1757 87 IDPKRVTKRV 96 (348)
Q Consensus 87 i~v~~a~~~~ 96 (348)
|.|+++..+.
T Consensus 85 l~V~~a~~~~ 94 (97)
T 1why_A 85 LRVDFAKSGP 94 (97)
T ss_dssp CEEEECCCCC
T ss_pred EEEEECCCCC
Confidence 9999987653
No 234
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1e-15 Score=117.27 Aligned_cols=78 Identities=22% Similarity=0.385 Sum_probs=70.8
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~ 175 (348)
....++|||+|||+++++++|+++|++||.|++|+++++ ||||+|.+.++|++|++.++ ..|.|+.|.|++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 456789999999999999999999999999999999743 99999999999999998874 889999999999
Q ss_pred cccCCCC
Q psy1757 176 VKFNPET 182 (348)
Q Consensus 176 a~~~~~~ 182 (348)
++++...
T Consensus 79 a~~~~~~ 85 (92)
T 2dgt_A 79 STSRLRT 85 (92)
T ss_dssp SSCCCSC
T ss_pred ccCCCCC
Confidence 9887653
No 235
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.64 E-value=5e-16 Score=123.57 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=70.5
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcC-CccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYG-SITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVK 174 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~ 174 (348)
....++|||+|||+++++++|+++|++|| .|+.++|..+ .++|||||+|.+.++|++||+.++ ..|+|+.|.|+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34568999999999999999999999999 8999998643 378999999999999999999885 88999999999
Q ss_pred EcccCCC
Q psy1757 175 RVKFNPE 181 (348)
Q Consensus 175 ~a~~~~~ 181 (348)
+++..+.
T Consensus 101 ~a~~~p~ 107 (111)
T 2jvr_A 101 RDDNPPP 107 (111)
T ss_dssp ESCC---
T ss_pred ECCCCCC
Confidence 9876543
No 236
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.3e-15 Score=117.19 Aligned_cols=80 Identities=25% Similarity=0.493 Sum_probs=70.4
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCccc
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKR 91 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~ 91 (348)
.....++|||+|||.++|+++|+++|++||.|.+| +.++.+++ ||||+|.+.++|++||++++..+.|+.|.|++
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRP 78 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBC
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEE
Confidence 34567899999999999999999999999999987 55555665 99999999999999999777899999999998
Q ss_pred ccccc
Q psy1757 92 VTKRV 96 (348)
Q Consensus 92 a~~~~ 96 (348)
+..+.
T Consensus 79 a~~~~ 83 (94)
T 2e5g_A 79 REQKE 83 (94)
T ss_dssp SCCSC
T ss_pred CCcCC
Confidence 86553
No 237
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.64 E-value=1.3e-16 Score=124.51 Aligned_cols=82 Identities=18% Similarity=0.399 Sum_probs=73.3
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCC-CCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDK-SKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVK 174 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~ 174 (348)
....++|||+|||.++++++|+++|++|| |++|+|+.++ .+++++|||||+|.+.++|++|+ .+ +..|+|+.|.|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34568999999999999999999999999 9999999998 68999999999999999999999 55 588999999999
Q ss_pred EcccCC
Q psy1757 175 RVKFNP 180 (348)
Q Consensus 175 ~a~~~~ 180 (348)
+++++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998764
No 238
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.64 E-value=7.8e-17 Score=122.92 Aligned_cols=80 Identities=21% Similarity=0.482 Sum_probs=72.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEcccC
Q psy1757 101 CKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVKFN 179 (348)
Q Consensus 101 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~~~ 179 (348)
++|||+|||.++++++|+++|++||.|++|+++.++.+++++|||||+|.+.+ |++|++.++ ..++|++|.|+++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 999999885 8899999999999876
Q ss_pred CC
Q psy1757 180 PE 181 (348)
Q Consensus 180 ~~ 181 (348)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 239
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.64 E-value=4.2e-16 Score=125.39 Aligned_cols=82 Identities=12% Similarity=0.242 Sum_probs=75.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCC---ccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEE
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGS---ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVK 174 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~ 174 (348)
...++|||+|||+++|+++|+++|++||. |+.|+|+.++. ++++|||||+|.+.++|++||+..+..|+|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 45688999999999999999999999999 89999999887 899999999999999999999955689999999999
Q ss_pred EcccCC
Q psy1757 175 RVKFNP 180 (348)
Q Consensus 175 ~a~~~~ 180 (348)
++..++
T Consensus 94 ~a~~~~ 99 (118)
T 2db1_A 94 KSHRTE 99 (118)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987654
No 240
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=4.5e-16 Score=126.82 Aligned_cols=83 Identities=11% Similarity=0.227 Sum_probs=72.2
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHH----HHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCC
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEIN----DYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGN 84 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~g 84 (348)
......+++|||+|||+++++++|+ ++|++||.|.+|.|.+ ++++||||||+|.+.++|++||+. ++..+.|
T Consensus 23 ~~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 23 PPHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp CCCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 3445668999999999999999876 7999999999998754 678999999999999999999975 6679999
Q ss_pred eecCccccccc
Q psy1757 85 KKIDPKRVTKR 95 (348)
Q Consensus 85 r~i~v~~a~~~ 95 (348)
+.|.|.++..+
T Consensus 100 r~l~V~~a~~~ 110 (127)
T 2a3j_A 100 NPLVITFSETP 110 (127)
T ss_dssp SCCEEEECCCC
T ss_pred CEEEEEEccCc
Confidence 99999998754
No 241
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=6.3e-16 Score=119.28 Aligned_cols=83 Identities=18% Similarity=0.271 Sum_probs=73.1
Q ss_pred ccccCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEE
Q psy1757 94 KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVD 172 (348)
Q Consensus 94 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~ 172 (348)
.......++|||+|||.++++++|+++|++||.|..+ ..++.++|||||+|.+.++|++|++.++ ..|+|+.|.
T Consensus 10 ~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 84 (96)
T 1fjc_A 10 SKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 84 (96)
T ss_dssp TSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3344567899999999999999999999999988766 4467899999999999999999999885 889999999
Q ss_pred EEEcccCCC
Q psy1757 173 VKRVKFNPE 181 (348)
Q Consensus 173 v~~a~~~~~ 181 (348)
|.+++++..
T Consensus 85 v~~a~~~~~ 93 (96)
T 1fjc_A 85 LYYTGEKGG 93 (96)
T ss_dssp EEECSSSCC
T ss_pred EEEcCCCCC
Confidence 999988754
No 242
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2.5e-16 Score=123.29 Aligned_cols=78 Identities=12% Similarity=0.120 Sum_probs=70.3
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC---CeeCCeEEEE
Q psy1757 98 PLKCKIFVGGLTT-EITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK---QVICGKEVDV 173 (348)
Q Consensus 98 ~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~---~~i~G~~i~v 173 (348)
..+++|||+|||+ ++++++|+++|++||.|++|.|+++ +|||||+|++.++|++|++.++ ..|.|++|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4568999999999 9999999999999999999999875 4799999999999999999864 5699999999
Q ss_pred EEcccCCC
Q psy1757 174 KRVKFNPE 181 (348)
Q Consensus 174 ~~a~~~~~ 181 (348)
.+++....
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x4d_A 87 HLSQKYKR 94 (102)
T ss_dssp EEECCCTT
T ss_pred EECCCCCC
Confidence 99987654
No 243
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.2e-16 Score=123.63 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=72.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEEcccC
Q psy1757 100 KCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFN 179 (348)
Q Consensus 100 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~a~~~ 179 (348)
.++|||+|||+++++++|+++|+.| .|++|+|+.++. ++++|||||+|.+.++|++||+..+..|+|+.|+|..+..+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCcc
Confidence 4789999999999999999999999 899999999876 89999999999999999999965568999999999988765
Q ss_pred C
Q psy1757 180 P 180 (348)
Q Consensus 180 ~ 180 (348)
.
T Consensus 94 ~ 94 (109)
T 2dnn_A 94 Q 94 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 244
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.8e-16 Score=121.10 Aligned_cols=81 Identities=12% Similarity=0.146 Sum_probs=72.2
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC---CCeeCCeEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP---KQVICGKEVDV 173 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~---~~~i~G~~i~v 173 (348)
....++|||+|||+++++++|+++|++||.|++|.++++ ||||||+|++.++|++|++.+ ...|.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 345689999999999999999999999999999998764 789999999999999999975 36899999999
Q ss_pred EEcccCCCCC
Q psy1757 174 KRVKFNPETM 183 (348)
Q Consensus 174 ~~a~~~~~~~ 183 (348)
.+++.+....
T Consensus 86 ~~a~~~~~~~ 95 (101)
T 2cq1_A 86 QYSNHKELKT 95 (101)
T ss_dssp EECSCSSCCC
T ss_pred EEcCcccCcC
Confidence 9999876543
No 245
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.63 E-value=6.8e-16 Score=122.34 Aligned_cols=92 Identities=18% Similarity=0.438 Sum_probs=77.0
Q ss_pred cCCeecCcccccccc----cCCCceEEEcCCCCC-CCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHH
Q psy1757 82 IGNKKIDPKRVTKRV----NPLKCKIFVGGLTTE-ITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAD 156 (348)
Q Consensus 82 ~~gr~i~v~~a~~~~----~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~ 156 (348)
..|..|.++.+.... ....++|||+|||++ +++++|+++|++||.|+.|+| ++|||||+|.+.++|+
T Consensus 5 ~~g~~~~~~~s~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 5 SSGMSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHAR 76 (110)
T ss_dssp CCSCCCCCCCCCSCCSCCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHH
T ss_pred CCCcccccccCCCCCCCCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHH
Confidence 356667666654332 223489999999999 999999999999999999988 4789999999999999
Q ss_pred HHHHcC-CCeeCCeEEEEEEcccCCC
Q psy1757 157 QVLKNP-KQVICGKEVDVKRVKFNPE 181 (348)
Q Consensus 157 ~Al~~~-~~~i~G~~i~v~~a~~~~~ 181 (348)
+|++.+ +..|+|+.|.|.+++....
T Consensus 77 ~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 77 AAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp HHHHHHTTCEETTEECCEEESCCCCS
T ss_pred HHHHHcCCCEECCeEEEEEECCCCCC
Confidence 999887 5889999999999986544
No 246
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=9.6e-16 Score=117.44 Aligned_cols=82 Identities=22% Similarity=0.396 Sum_probs=73.4
Q ss_pred CCCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCee
Q psy1757 8 TAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKK 86 (348)
Q Consensus 8 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~ 86 (348)
.+.......++|||+|||.++|+++|+++|++||.|.+|+|+++ ||||+|.+.++|++||+ +++..+.++.
T Consensus 2 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~ 73 (92)
T 2dgt_A 2 SSGSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKR 73 (92)
T ss_dssp CCSCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 45566778899999999999999999999999999999999853 99999999999999997 5778999999
Q ss_pred cCccccccccc
Q psy1757 87 IDPKRVTKRVN 97 (348)
Q Consensus 87 i~v~~a~~~~~ 97 (348)
|.|+++..+..
T Consensus 74 l~V~~a~~~~~ 84 (92)
T 2dgt_A 74 MHVQLSTSRLR 84 (92)
T ss_dssp EEEEESSCCCS
T ss_pred EEEEEccCCCC
Confidence 99999876543
No 247
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=4.5e-16 Score=118.77 Aligned_cols=78 Identities=28% Similarity=0.542 Sum_probs=70.9
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~ 175 (348)
....++|||+|||+++++++|+++|++||.|+.|++. ++||||+|.+.++|++|++.++ ..|+|++|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3456899999999999999999999999999999986 5699999999999999998875 789999999999
Q ss_pred cccCCCC
Q psy1757 176 VKFNPET 182 (348)
Q Consensus 176 a~~~~~~ 182 (348)
++++...
T Consensus 77 a~~~~~~ 83 (90)
T 2dnq_A 77 SKNKSKA 83 (90)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9987654
No 248
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.63 E-value=9.7e-16 Score=126.34 Aligned_cols=80 Identities=26% Similarity=0.534 Sum_probs=74.4
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~ 175 (348)
....++|||+|||.++++++|+++|++||.|+.|+|+.++.+++++|||||+|.+.++|++|++.++ ..|.|+.|+|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3456899999999999999999999999999999999999999999999999999999999999885 889999999987
Q ss_pred c
Q psy1757 176 V 176 (348)
Q Consensus 176 a 176 (348)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 249
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.3e-16 Score=125.22 Aligned_cols=81 Identities=16% Similarity=0.224 Sum_probs=72.8
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC---CeeCCeEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK---QVICGKEVDV 173 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~---~~i~G~~i~v 173 (348)
.+.+++|||+|||+++++++|+++|++||.|++|+|+++ ||||||+|++.++|++|++.++ ..|.|++|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 345689999999999999999999999999999999865 7899999999999999999764 5799999999
Q ss_pred EEcccCCCCC
Q psy1757 174 KRVKFNPETM 183 (348)
Q Consensus 174 ~~a~~~~~~~ 183 (348)
.+++.+....
T Consensus 102 ~~a~~k~~~~ 111 (119)
T 2ad9_A 102 QFSNHKELKT 111 (119)
T ss_dssp EECSSSSCCC
T ss_pred EEccCCCCCc
Confidence 9998876643
No 250
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=4e-16 Score=124.66 Aligned_cols=80 Identities=25% Similarity=0.410 Sum_probs=70.0
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCC---CCcceEEEEEecCHHHHHHHHHhCCcccCCeec
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYT---GQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKI 87 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~t---g~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i 87 (348)
......++|||+|||+++|+++|+++|++||+|. +.++.++.+ ++++|||||+|.+.++|++||+.+ +.++|+.+
T Consensus 3 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~ 80 (114)
T 2dnl_A 3 SGSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLY 80 (114)
T ss_dssp CSSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEE
T ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEE
Confidence 3456789999999999999999999999999999 888888777 799999999999999999999976 34788887
Q ss_pred Ccccc
Q psy1757 88 DPKRV 92 (348)
Q Consensus 88 ~v~~a 92 (348)
.+..+
T Consensus 81 ~~~~~ 85 (114)
T 2dnl_A 81 LCVSS 85 (114)
T ss_dssp EEECC
T ss_pred EeccC
Confidence 76643
No 251
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.7e-16 Score=126.63 Aligned_cols=87 Identities=17% Similarity=0.246 Sum_probs=72.7
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCc
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDP 89 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v 89 (348)
.....+++|||+|||.++|+++|+++|++||.|.+|.+..+..+++++|||||+|.+.++|++||+. ++..+.|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 20 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3345679999999999999999999999999995433333333788999999999999999999985 678999999999
Q ss_pred cccccccc
Q psy1757 90 KRVTKRVN 97 (348)
Q Consensus 90 ~~a~~~~~ 97 (348)
+++..+..
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpx_A 100 EFGKNKKQ 107 (115)
T ss_dssp EECCCCSC
T ss_pred EEccCCCC
Confidence 99876643
No 252
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.6e-16 Score=122.22 Aligned_cols=82 Identities=27% Similarity=0.520 Sum_probs=74.1
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEE
Q psy1757 96 VNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVK 174 (348)
Q Consensus 96 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~ 174 (348)
.....++|||+|||..+++++|+++|++||.|+.|+|+.+ +|||||+|.+.++|++|++.+ +..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999876 679999999999999999887 589999999999
Q ss_pred EcccCCCCC
Q psy1757 175 RVKFNPETM 183 (348)
Q Consensus 175 ~a~~~~~~~ 183 (348)
+++++....
T Consensus 95 ~a~~~~~~~ 103 (109)
T 1x4g_A 95 WGKESPDMT 103 (109)
T ss_dssp CCCCCCSSC
T ss_pred ecCCCCCCC
Confidence 999876543
No 253
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1e-15 Score=118.94 Aligned_cols=81 Identities=21% Similarity=0.403 Sum_probs=72.2
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecC
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKID 88 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~ 88 (348)
.....+.++|||+|||.++|+++|+++|++||+|.+|+|+++ +|||||+|.+.++|++||+ +++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 82 (99)
T 2cpj_A 9 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLR 82 (99)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCE
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEE
Confidence 345567899999999999999999999999999999999865 5899999999999999996 477899999999
Q ss_pred cccccccc
Q psy1757 89 PKRVTKRV 96 (348)
Q Consensus 89 v~~a~~~~ 96 (348)
|+++..+.
T Consensus 83 v~~a~~~~ 90 (99)
T 2cpj_A 83 VRFACHSA 90 (99)
T ss_dssp EEESSCCS
T ss_pred EEEcCCCC
Confidence 99987643
No 254
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=2.4e-17 Score=132.11 Aligned_cols=86 Identities=24% Similarity=0.418 Sum_probs=78.6
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeE--------EEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCccc
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVES--------ISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYI 82 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~--------i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~ 82 (348)
+..+.++|||+|||.++|+++|+++|++||.|.+ |+|+.++.+++++|||||+|.+.++|++||+ +++..+
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4567899999999999999999999999999999 9999998899999999999999999999999 467899
Q ss_pred CCeecCccccccccc
Q psy1757 83 GNKKIDPKRVTKRVN 97 (348)
Q Consensus 83 ~gr~i~v~~a~~~~~ 97 (348)
.|+.|.|+++..+..
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 SGNPIKVSFATRRAD 97 (116)
Confidence 999999999876543
No 255
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.63 E-value=6.2e-16 Score=125.23 Aligned_cols=83 Identities=17% Similarity=0.362 Sum_probs=77.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEEc
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKRV 176 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~a 176 (348)
...++|||+|||.++++++|+++|++||.|+.|+|+.++ +++++|||||+|.+.++|++|++.+ +..|+|+.|.|+++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 456899999999999999999999999999999999998 8999999999999999999999976 48899999999999
Q ss_pred ccCCC
Q psy1757 177 KFNPE 181 (348)
Q Consensus 177 ~~~~~ 181 (348)
.+...
T Consensus 112 ~~~~~ 116 (124)
T 2kt5_A 112 ASQID 116 (124)
T ss_dssp CCTTC
T ss_pred CCCCC
Confidence 87654
No 256
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6e-16 Score=122.63 Aligned_cols=81 Identities=22% Similarity=0.482 Sum_probs=74.0
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~ 175 (348)
....++|||+|||.++++++|+++|++||.|+.|+++.++ +.++|||||+|.+.++|++|++.+ +..|+|+.|.|++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4456899999999999999999999999999999999885 348999999999999999999986 5889999999999
Q ss_pred cccC
Q psy1757 176 VKFN 179 (348)
Q Consensus 176 a~~~ 179 (348)
++++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9875
No 257
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.62 E-value=5.5e-16 Score=120.55 Aligned_cols=78 Identities=19% Similarity=0.244 Sum_probs=70.0
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC---CeeCCeEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK---QVICGKEVDV 173 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~---~~i~G~~i~v 173 (348)
.+.+++|||+|||+++|+++|+++|++||.|++|++++ .||+|||+|++.++|++|++.++ ..|.|++|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 45678999999999999999999999999999999875 36899999999999999999874 3589999999
Q ss_pred EEcccCC
Q psy1757 174 KRVKFNP 180 (348)
Q Consensus 174 ~~a~~~~ 180 (348)
.+++.++
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998764
No 258
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.62 E-value=7e-16 Score=132.98 Aligned_cols=84 Identities=19% Similarity=0.362 Sum_probs=76.8
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCcc
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPK 90 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~ 90 (348)
.....++|||+|||.++|+++|+++|++||+|++|.|+.++ ++.++|||||+|.+.++|++||+ +++..|.|+.|.|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34557899999999999999999999999999999999998 99999999999999999999999 56679999999999
Q ss_pred cccccc
Q psy1757 91 RVTKRV 96 (348)
Q Consensus 91 ~a~~~~ 96 (348)
++....
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 986543
No 259
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=120.76 Aligned_cols=80 Identities=14% Similarity=0.363 Sum_probs=72.3
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCcc
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPK 90 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~ 90 (348)
.....++|||+|||.++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|++||+ +++..+.|+.|.|+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456799999999999999999999999999999999986 5899999999999999996 57789999999999
Q ss_pred ccccccc
Q psy1757 91 RVTKRVN 97 (348)
Q Consensus 91 ~a~~~~~ 97 (348)
++..+..
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9876643
No 260
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=9.9e-16 Score=119.38 Aligned_cols=76 Identities=29% Similarity=0.531 Sum_probs=70.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEEcccC
Q psy1757 101 CKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKRVKFN 179 (348)
Q Consensus 101 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~a~~~ 179 (348)
++|||+|||+++++++|+++|++||.|+.|+++.+ ++|||||+|.+.++|++|++.+ +..++|+.|.|++++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 57999999999999999999999999999999877 6889999999999999999987 48899999999999987
Q ss_pred CC
Q psy1757 180 PE 181 (348)
Q Consensus 180 ~~ 181 (348)
..
T Consensus 76 ~~ 77 (101)
T 2hvz_A 76 PR 77 (101)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 261
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=6.2e-16 Score=122.94 Aligned_cols=79 Identities=10% Similarity=0.185 Sum_probs=69.7
Q ss_pred CCCCCCEEEEcCCCCc-ccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh---CCcccCCeec
Q psy1757 12 GRNDERKLFVGGLHRN-TGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA---GDHYIGNKKI 87 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~---~~~~~~gr~i 87 (348)
....+++|||+|||++ +|+++|+++|++||.|.+|+|++. ||||||+|++.++|++||+. +...+.|+.|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3567899999999998 999999999999999999999753 58999999999999999985 3457999999
Q ss_pred Ccccccccc
Q psy1757 88 DPKRVTKRV 96 (348)
Q Consensus 88 ~v~~a~~~~ 96 (348)
.|.++..+.
T Consensus 95 ~V~~a~~~~ 103 (112)
T 1x4f_A 95 KVDLSEKYK 103 (112)
T ss_dssp EEEEECSCS
T ss_pred EEEECcccc
Confidence 999987554
No 262
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.62 E-value=2.8e-16 Score=127.72 Aligned_cols=81 Identities=21% Similarity=0.328 Sum_probs=74.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCcc--ccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEE
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSIT--EFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~ 175 (348)
...++|||+|||+++|+++|+++|++| .|+ +|+|+.++. ++++|||||+|.+.++|++||+.++..|+|+.|+|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 356889999999999999999999999 677 899999987 9999999999999999999999878999999999998
Q ss_pred cccCC
Q psy1757 176 VKFNP 180 (348)
Q Consensus 176 a~~~~ 180 (348)
+..++
T Consensus 118 a~~~e 122 (126)
T 2hgm_A 118 SSQEE 122 (126)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87653
No 263
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.62 E-value=1.3e-15 Score=119.28 Aligned_cols=80 Identities=18% Similarity=0.324 Sum_probs=71.1
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecC
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKID 88 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~ 88 (348)
.......++|||+|||.++|+++|+++|++||.|.+|+|++ +||||+|.+.++|++||+ +++..|.++.|.
T Consensus 5 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 76 (103)
T 2dgu_A 5 SSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIE 76 (103)
T ss_dssp CCCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEE
Confidence 34456789999999999999999999999999999999874 599999999999999999 577899999999
Q ss_pred ccccccccc
Q psy1757 89 PKRVTKRVN 97 (348)
Q Consensus 89 v~~a~~~~~ 97 (348)
|+++..+..
T Consensus 77 v~~a~~~~~ 85 (103)
T 2dgu_A 77 IVFAKPPDQ 85 (103)
T ss_dssp EEECCCCCC
T ss_pred EEEcCCCcc
Confidence 999876543
No 264
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=6.4e-16 Score=118.02 Aligned_cols=80 Identities=28% Similarity=0.458 Sum_probs=63.2
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCcc
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPK 90 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~ 90 (348)
.......+|||+|||+++|+++|+++|++||.|.+|+|+++ +||||||+|++.++|+++. .....+.++.|.+.
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~-~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLC-GEDLIIKGISVHIS 79 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHT-TCEEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHc-CCCcccCCEEEEEE
Confidence 34567899999999999999999999999999999999874 7899999999999998532 22345679999999
Q ss_pred cccccc
Q psy1757 91 RVTKRV 96 (348)
Q Consensus 91 ~a~~~~ 96 (348)
++.++.
T Consensus 80 ~a~~k~ 85 (89)
T 3d2w_A 80 NAEPKH 85 (89)
T ss_dssp ECC---
T ss_pred EcCCCC
Confidence 887654
No 265
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=4.6e-16 Score=126.04 Aligned_cols=82 Identities=17% Similarity=0.214 Sum_probs=73.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCc----cccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEE
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSI----TEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDV 173 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i----~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v 173 (348)
...++|||+|||+++|+++|+++|++||.| +.|+|+.+ .+++++|||||+|.+.++|++||+..++.|.++.|+|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 346889999999999999999999999875 68999888 4899999999999999999999998678899999999
Q ss_pred EEcccCC
Q psy1757 174 KRVKFNP 180 (348)
Q Consensus 174 ~~a~~~~ 180 (348)
..+.+++
T Consensus 100 ~~a~~~e 106 (123)
T 2dha_A 100 FRSTAAE 106 (123)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9887653
No 266
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.6e-16 Score=126.76 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=75.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEEccc
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKF 178 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~a~~ 178 (348)
..++|||+|||+++++++|+++|++||.|+.+.++.+..+++++|||||+|.+.++|++||+..+..|+|+.|.|.++..
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCH
Confidence 45899999999999999999999999999998888888899999999999999999999999435889999999999887
Q ss_pred CC
Q psy1757 179 NP 180 (348)
Q Consensus 179 ~~ 180 (348)
+.
T Consensus 104 ~~ 105 (124)
T 1wel_A 104 KG 105 (124)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 267
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=9.9e-16 Score=120.46 Aligned_cols=80 Identities=16% Similarity=0.209 Sum_probs=71.2
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC---CeeCCeEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK---QVICGKEVDV 173 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~---~~i~G~~i~v 173 (348)
...+++|||+|||+++++++|+++|++||.|++|.++++ ||||||+|++.++|++|++.++ ..|.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345689999999999999999999999999999998764 6899999999999999999763 5699999999
Q ss_pred EEcccCCCC
Q psy1757 174 KRVKFNPET 182 (348)
Q Consensus 174 ~~a~~~~~~ 182 (348)
.+++.+...
T Consensus 86 ~~a~~~~~~ 94 (104)
T 1wex_A 86 NYSTSKRIT 94 (104)
T ss_dssp EECSSSSCC
T ss_pred EEccCcccc
Confidence 999887654
No 268
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.61 E-value=5.9e-16 Score=116.69 Aligned_cols=73 Identities=14% Similarity=0.245 Sum_probs=67.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEccc
Q psy1757 100 KCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVKF 178 (348)
Q Consensus 100 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~~ 178 (348)
+..|||+||++.+||++|+++|.+||+|+++++.. +||||||+|.++++|++|++.+| ..+.|++|+|+++..
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSE 80 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCH
Confidence 46799999999999999999999999999999865 58999999999999999999985 889999999999853
No 269
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.5e-15 Score=116.46 Aligned_cols=78 Identities=22% Similarity=0.364 Sum_probs=68.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCC-ccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-C-CeeCCeEEEEE
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGS-ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-K-QVICGKEVDVK 174 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~-~~i~G~~i~v~ 174 (348)
...++|||+|||+++++++|+++|++||. |..+.+ .++|||||+|.+.++|++|++.+ + ..|+|++|.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-------LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-------EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-------cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45689999999999999999999999999 555555 25789999999999999999977 5 78999999999
Q ss_pred EcccCCCC
Q psy1757 175 RVKFNPET 182 (348)
Q Consensus 175 ~a~~~~~~ 182 (348)
+++++..+
T Consensus 79 ~a~~~~~~ 86 (93)
T 2cqh_A 79 YSVSKKLR 86 (93)
T ss_dssp ECCCCCCC
T ss_pred EccCcccc
Confidence 99987653
No 270
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.61 E-value=4.6e-16 Score=124.55 Aligned_cols=76 Identities=17% Similarity=0.179 Sum_probs=64.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeE-----EE
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKE-----VD 172 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~-----i~ 172 (348)
..++|||+|||+++++++|+++|++||.|+.|.|+.+ |||||+|.+.++|++||+.++ ..|+|++ |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4689999999999999999999999999999999876 799999999999999999875 8899988 66
Q ss_pred EEEcccCCC
Q psy1757 173 VKRVKFNPE 181 (348)
Q Consensus 173 v~~a~~~~~ 181 (348)
|....++..
T Consensus 88 v~~~~~~~~ 96 (115)
T 3beg_B 88 VKVDGPRSP 96 (115)
T ss_dssp EEECC----
T ss_pred eccCCCCCC
Confidence 666665443
No 271
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=117.35 Aligned_cols=81 Identities=16% Similarity=0.311 Sum_probs=70.8
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCc
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDP 89 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v 89 (348)
......++|||+|||.++|+++|+++|++||.|. +.++.+ .++|||||+|.+.++|++||+. ++..+.|+.|.|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 4456689999999999999999999999999997 666654 5789999999999999999974 778999999999
Q ss_pred ccccccc
Q psy1757 90 KRVTKRV 96 (348)
Q Consensus 90 ~~a~~~~ 96 (348)
+++..+.
T Consensus 89 ~~a~~~~ 95 (97)
T 2e5j_A 89 ALARQQR 95 (97)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 9987653
No 272
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=8.2e-16 Score=116.83 Aligned_cols=78 Identities=27% Similarity=0.546 Sum_probs=68.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEEccc
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKF 178 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~a~~ 178 (348)
.+++|||+|||+++++++|+++|++||.|++|+|+.+ ++|||||+|.+.++|++|+.. ...+++++|.|.++++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 4689999999999999999999999999999999865 689999999999999876443 4677999999999988
Q ss_pred CCCC
Q psy1757 179 NPET 182 (348)
Q Consensus 179 ~~~~ 182 (348)
+...
T Consensus 78 ~~~~ 81 (88)
T 1wf0_A 78 KHNS 81 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 273
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.61 E-value=4.9e-16 Score=119.91 Aligned_cols=83 Identities=17% Similarity=0.298 Sum_probs=72.5
Q ss_pred CCCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeec
Q psy1757 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKI 87 (348)
Q Consensus 9 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i 87 (348)
......+.++|||+|||.++|+++|+++|++||.|..+ ..++.++|||||+|.+.++|++||+ +++..+.|+.|
T Consensus 9 ~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 83 (96)
T 1fjc_A 9 TSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 83 (96)
T ss_dssp TTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 44556678999999999999999999999999988766 3478899999999999999999999 46679999999
Q ss_pred Ccccccccc
Q psy1757 88 DPKRVTKRV 96 (348)
Q Consensus 88 ~v~~a~~~~ 96 (348)
.|+++..+.
T Consensus 84 ~v~~a~~~~ 92 (96)
T 1fjc_A 84 SLYYTGEKG 92 (96)
T ss_dssp EEEECSSSC
T ss_pred EEEEcCCCC
Confidence 999986654
No 274
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.61 E-value=1.7e-15 Score=131.42 Aligned_cols=84 Identities=33% Similarity=0.670 Sum_probs=76.1
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCccccc
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVT 93 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~a~ 93 (348)
...++|||+|||.++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|++||+.++..+.|+.|.|.++.
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecC
Confidence 45689999999999999999999999999999999999989999999999999999999999988889999999999987
Q ss_pred cccc
Q psy1757 94 KRVN 97 (348)
Q Consensus 94 ~~~~ 97 (348)
++..
T Consensus 182 ~k~~ 185 (196)
T 1l3k_A 182 SKQE 185 (196)
T ss_dssp ----
T ss_pred ChhH
Confidence 6643
No 275
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.61 E-value=5.1e-16 Score=119.99 Aligned_cols=83 Identities=17% Similarity=0.344 Sum_probs=72.8
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHH----HHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCe
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEIN----DYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNK 85 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr 85 (348)
.+...+++|||+|||.++|+++|+ ++|++||.|.+|.|++ ++.++|||||+|.+.++|++|++ +++..+.|+
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 79 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc
Confidence 345678999999999999999999 9999999999999874 67788999999999999999998 577899999
Q ss_pred ecCcccccccc
Q psy1757 86 KIDPKRVTKRV 96 (348)
Q Consensus 86 ~i~v~~a~~~~ 96 (348)
.|.|+++..+.
T Consensus 80 ~l~v~~a~~~~ 90 (97)
T 1nu4_A 80 PMRIQYAKTDS 90 (97)
T ss_dssp ECEEEECSSCC
T ss_pred EEEEEEccCCC
Confidence 99999987653
No 276
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.61 E-value=9.1e-16 Score=120.73 Aligned_cols=82 Identities=18% Similarity=0.256 Sum_probs=73.8
Q ss_pred CCCceEEEcCCCCCC------CHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCe-
Q psy1757 98 PLKCKIFVGGLTTEI------TEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGK- 169 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~------te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~- 169 (348)
...++|||+|||+.+ ++++|+++|++||.|+.|.|+ +.+++++|||||+|.+.++|++|++.++ ..|.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 346899999999999 789999999999999999998 4678999999999999999999999875 889998
Q ss_pred EEEEEEcccCCC
Q psy1757 170 EVDVKRVKFNPE 181 (348)
Q Consensus 170 ~i~v~~a~~~~~ 181 (348)
+|.|.++.....
T Consensus 91 ~l~V~~a~~~~k 102 (105)
T 2nlw_A 91 TFRVNLFTDFDK 102 (105)
T ss_dssp EEEEECSCCCCC
T ss_pred eEEEEEcchHhh
Confidence 999999876543
No 277
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.61 E-value=4.3e-16 Score=121.66 Aligned_cols=81 Identities=23% Similarity=0.548 Sum_probs=75.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEEccc
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKF 178 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~a~~ 178 (348)
..++|||+|||+++++++|+++|++||.|+.|+|+.++ +++++|||||+|.+.++|++|++ .++.++|+.|.|.++.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCc
Confidence 45899999999999999999999999999999999998 89999999999999999999999 66889999999999987
Q ss_pred CCC
Q psy1757 179 NPE 181 (348)
Q Consensus 179 ~~~ 181 (348)
+..
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 755
No 278
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.61 E-value=2.8e-15 Score=118.77 Aligned_cols=76 Identities=20% Similarity=0.495 Sum_probs=68.2
Q ss_pred CCCCCEEEEcCCCCc-ccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCcc
Q psy1757 13 RNDERKLFVGGLHRN-TGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPK 90 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~ 90 (348)
....++|||+|||.+ +|+++|+++|++||.|.+|+| ++|||||+|.+.++|++||+ +++..+.|+.|.|+
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 345589999999999 999999999999999999998 46899999999999999996 57789999999999
Q ss_pred cccccc
Q psy1757 91 RVTKRV 96 (348)
Q Consensus 91 ~a~~~~ 96 (348)
++....
T Consensus 96 ~a~~~~ 101 (110)
T 1wf1_A 96 MAGEPK 101 (110)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 987543
No 279
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.61 E-value=4.9e-16 Score=122.69 Aligned_cols=83 Identities=16% Similarity=0.213 Sum_probs=75.5
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCC---ccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGS---ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDV 173 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v 173 (348)
....++|||+|||+++|+++|+++|+.||. |+.|+|+.++. ++++|||||+|.+.++|++||+..+..|+|+.|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEE
Confidence 345689999999999999999999999998 89999999987 99999999999999999999994458899999999
Q ss_pred EEcccCC
Q psy1757 174 KRVKFNP 180 (348)
Q Consensus 174 ~~a~~~~ 180 (348)
.++.++.
T Consensus 87 ~~a~~~~ 93 (107)
T 2lmi_A 87 YEINNED 93 (107)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 9988754
No 280
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.3e-16 Score=118.41 Aligned_cols=79 Identities=28% Similarity=0.480 Sum_probs=68.0
Q ss_pred CCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCcccc
Q psy1757 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRV 92 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~a 92 (348)
...+++|||+|||.++|+++|+++|++||+|.+|+|+++ ++|||||+|.+.++|++++.. ...+.++.|.+.++
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNA 75 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEec
Confidence 356799999999999999999999999999999999865 679999999999999876443 45678999999988
Q ss_pred ccccc
Q psy1757 93 TKRVN 97 (348)
Q Consensus 93 ~~~~~ 97 (348)
.++..
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 281
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.61 E-value=2e-15 Score=119.50 Aligned_cols=79 Identities=20% Similarity=0.407 Sum_probs=70.1
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecC
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKID 88 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~ 88 (348)
.......++|||+|||.++|+++|+++|++||.|++|+|+ +|||||+|.+.++|++|++ +++..+.|+.|.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3456678999999999999999999999999999999998 5899999999999999998 578899999999
Q ss_pred cccccccc
Q psy1757 89 PKRVTKRV 96 (348)
Q Consensus 89 v~~a~~~~ 96 (348)
|+++..+.
T Consensus 97 V~~a~~~~ 104 (108)
T 2jvo_A 97 VVYSKLPA 104 (108)
T ss_dssp EESCSCCC
T ss_pred EEEecCCC
Confidence 99987653
No 282
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.4e-15 Score=114.75 Aligned_cols=77 Identities=22% Similarity=0.399 Sum_probs=70.2
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~ 175 (348)
....++|||+|||+++++++|+++|++||.|+.|+++++ ||||+|.+.++|++|++.+ +..|+|+.|.|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 445789999999999999999999999999999999743 9999999999999999987 5889999999999
Q ss_pred cccCCC
Q psy1757 176 VKFNPE 181 (348)
Q Consensus 176 a~~~~~ 181 (348)
++++..
T Consensus 78 a~~~~~ 83 (90)
T 2dnp_A 78 STKGQK 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 988754
No 283
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.9e-15 Score=115.30 Aligned_cols=80 Identities=21% Similarity=0.364 Sum_probs=71.5
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecC
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKID 88 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~ 88 (348)
.......++|||+|||.++|+++|+++|++||.|.+|+|+++ ||||+|.+.++|++||+ +++..+.++.|.
T Consensus 3 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 74 (90)
T 2dnp_A 3 SGSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRIN 74 (90)
T ss_dssp CCSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 345667899999999999999999999999999999999853 99999999999999998 577899999999
Q ss_pred ccccccccc
Q psy1757 89 PKRVTKRVN 97 (348)
Q Consensus 89 v~~a~~~~~ 97 (348)
|+++..+..
T Consensus 75 v~~a~~~~~ 83 (90)
T 2dnp_A 75 VELSTKGQK 83 (90)
T ss_dssp EEESCCCCC
T ss_pred EEECCCCCC
Confidence 999876543
No 284
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.5e-15 Score=117.42 Aligned_cols=79 Identities=23% Similarity=0.420 Sum_probs=68.5
Q ss_pred CCCCCCCEEEEcCCCC-cccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecC
Q psy1757 11 PGRNDERKLFVGGLHR-NTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKID 88 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~ 88 (348)
....+.++|||+|||. ++|+++|+++|++||.|.+|+|. +|||||+|.+.++|++||+ +++..+.|+.|.
T Consensus 5 ~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (96)
T 2kvi_A 5 HNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLI 76 (96)
T ss_dssp ----CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBC
T ss_pred ccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 4566789999999998 99999999999999999999985 5899999999999999999 477899999999
Q ss_pred ccccccccc
Q psy1757 89 PKRVTKRVN 97 (348)
Q Consensus 89 v~~a~~~~~ 97 (348)
|+++..+..
T Consensus 77 V~~a~~~~~ 85 (96)
T 2kvi_A 77 LEVSSSNAR 85 (96)
T ss_dssp EEEEECCCC
T ss_pred EEEcCcCCC
Confidence 999876543
No 285
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=9.6e-17 Score=121.09 Aligned_cols=79 Identities=23% Similarity=0.384 Sum_probs=71.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEc
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRV 176 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a 176 (348)
...++|||+|||+++++++|+++|++||.|+.|+|+.++.++.++|||||+|.+.++|++|++.++ ..|.|+.+++.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 356899999999999999999999999999999999999999999999999999999999999874 7788887766543
No 286
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.60 E-value=7.4e-16 Score=122.57 Aligned_cols=80 Identities=10% Similarity=0.121 Sum_probs=69.7
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCC-CeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCc
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYG-EVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDP 89 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G-~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v 89 (348)
.....++|||+|||+++|+++|+++|++|| +|..|+|..+ .++|||||+|.+.++|++||+ +++..+.|+.|.|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 455678999999999999999999999999 8999988543 478999999999999999997 5678999999999
Q ss_pred cccccc
Q psy1757 90 KRVTKR 95 (348)
Q Consensus 90 ~~a~~~ 95 (348)
+++...
T Consensus 100 ~~a~~~ 105 (111)
T 2jvr_A 100 ERDDNP 105 (111)
T ss_dssp EESCC-
T ss_pred EECCCC
Confidence 988643
No 287
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.9e-15 Score=115.03 Aligned_cols=80 Identities=19% Similarity=0.296 Sum_probs=70.6
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcC--CCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCee
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQY--GEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKK 86 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~--G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~ 86 (348)
.......++|||+|||.++|+++|+++|++| |.|.+|++. +|||||+|.+.++|++||+ +++..+.++.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred ccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3445568999999999999999999999999 999998875 3699999999999999999 6778999999
Q ss_pred cCccccccccc
Q psy1757 87 IDPKRVTKRVN 97 (348)
Q Consensus 87 i~v~~a~~~~~ 97 (348)
|.|+++.++..
T Consensus 81 l~v~~a~~~~~ 91 (99)
T 2cpd_A 81 IEVTLAKPVDK 91 (99)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCCC
Confidence 99999876543
No 288
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.60 E-value=3.1e-15 Score=116.01 Aligned_cols=78 Identities=24% Similarity=0.453 Sum_probs=68.4
Q ss_pred CCCCCCCCEEEEcCCCC-cccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeec
Q psy1757 10 GPGRNDERKLFVGGLHR-NTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKI 87 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i 87 (348)
.....++++|||+|||. ++++++|+++|++||.|.+|+|. +|||||+|.+.++|++||+ +++..+.|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 44566789999999998 99999999999999999999984 5899999999999999999 56788999999
Q ss_pred Cccccccc
Q psy1757 88 DPKRVTKR 95 (348)
Q Consensus 88 ~v~~a~~~ 95 (348)
.|+++..+
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99987653
No 289
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.4e-15 Score=117.68 Aligned_cols=79 Identities=18% Similarity=0.363 Sum_probs=71.3
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeC--CeEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVIC--GKEVDV 173 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~--G~~i~v 173 (348)
....++|||+|||.++++++|+++|++||.|++|++..+ +|||||+|.+.++|++|++.++ ..|. |+.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345689999999999999999999999999999998764 6799999999999999999874 8899 999999
Q ss_pred EEcccCCC
Q psy1757 174 KRVKFNPE 181 (348)
Q Consensus 174 ~~a~~~~~ 181 (348)
.+++++..
T Consensus 88 ~~a~~~~~ 95 (97)
T 1why_A 88 DFAKSGPS 95 (97)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99998754
No 290
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.4e-15 Score=118.13 Aligned_cols=80 Identities=28% Similarity=0.476 Sum_probs=72.2
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~ 175 (348)
....++|||+|||+++++++|+++|++||.|+.|++.++ +|||||+|.+.++|++|++.+ +..|+|++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 345689999999999999999999999999999998754 689999999999999999887 4889999999999
Q ss_pred cccCCCC
Q psy1757 176 VKFNPET 182 (348)
Q Consensus 176 a~~~~~~ 182 (348)
++++...
T Consensus 86 a~~~~~~ 92 (99)
T 2cpj_A 86 ACHSASL 92 (99)
T ss_dssp SSCCSCC
T ss_pred cCCCCCC
Confidence 9987653
No 291
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.60 E-value=5e-15 Score=124.61 Aligned_cols=84 Identities=23% Similarity=0.407 Sum_probs=77.9
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecC
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKID 88 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~ 88 (348)
.......++|||+|||.++|+++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|++|++ +++..+.|+.|.
T Consensus 81 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 160 (166)
T 3md3_A 81 QSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR 160 (166)
T ss_dssp CCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Confidence 3456678899999999999999999999999999999999998899999999999999999999998 677899999999
Q ss_pred ccccc
Q psy1757 89 PKRVT 93 (348)
Q Consensus 89 v~~a~ 93 (348)
|.++.
T Consensus 161 v~~a~ 165 (166)
T 3md3_A 161 INWAA 165 (166)
T ss_dssp EEESC
T ss_pred EEecC
Confidence 99875
No 292
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.2e-15 Score=115.43 Aligned_cols=77 Identities=17% Similarity=0.318 Sum_probs=69.1
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhc--CCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQY--GSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDV 173 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v 173 (348)
....++|||+|||+++++++|+++|++| |.|+.|++. +|||||+|.+.++|++|++.+ +..|+|++|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3456899999999999999999999999 889988764 569999999999999999977 48899999999
Q ss_pred EEcccCCC
Q psy1757 174 KRVKFNPE 181 (348)
Q Consensus 174 ~~a~~~~~ 181 (348)
.+++++..
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99988754
No 293
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.59 E-value=2.4e-15 Score=114.77 Aligned_cols=79 Identities=25% Similarity=0.523 Sum_probs=64.5
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEEc
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRV 176 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~a 176 (348)
....++|||+|||+++|+++|+++|++||.|++|+|+++ +||||||+|++.++|+++. .....+.|+.|.|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~-~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLC-GEDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHT-TCEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHc-CCCcccCCEEEEEEEc
Confidence 345689999999999999999999999999999999875 6899999999999998543 2345678999999999
Q ss_pred ccCCC
Q psy1757 177 KFNPE 181 (348)
Q Consensus 177 ~~~~~ 181 (348)
.++..
T Consensus 82 ~~k~~ 86 (89)
T 3d2w_A 82 EPKHN 86 (89)
T ss_dssp C----
T ss_pred CCCCc
Confidence 88754
No 294
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.59 E-value=2.9e-15 Score=125.39 Aligned_cols=81 Identities=20% Similarity=0.367 Sum_probs=73.2
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecC
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKID 88 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~ 88 (348)
.......++|||+|||+++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|++||+ +++..+.|+.|.
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 444567899999999999999999999999999999999886 57999999999999999998 578899999999
Q ss_pred ccccccc
Q psy1757 89 PKRVTKR 95 (348)
Q Consensus 89 v~~a~~~ 95 (348)
|+++.++
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9988654
No 295
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.2e-15 Score=121.56 Aligned_cols=82 Identities=12% Similarity=0.240 Sum_probs=74.3
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-Cee--------C
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVI--------C 167 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i--------~ 167 (348)
....++|||+|||.++++++|+++|++||.|+.|+|+.++ ++.++|||||+|.+.++|++|++.++ ..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456899999999999999999999999999999999998 89999999999999999999999874 667 5
Q ss_pred CeEEEEEEcccC
Q psy1757 168 GKEVDVKRVKFN 179 (348)
Q Consensus 168 G~~i~v~~a~~~ 179 (348)
+++|.|++++++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999998854
No 296
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=3.1e-15 Score=115.32 Aligned_cols=82 Identities=22% Similarity=0.303 Sum_probs=71.8
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEE-EEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeec
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESI-SIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKI 87 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i-~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i 87 (348)
.+.....++|||+|||.++|+++|+++|++||.|.+| .|+.++.++ .|||+|.+.++|++||+ +++..+.|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 84 (96)
T 2e44_A 9 VPKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTL 84 (96)
T ss_dssp CCCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 3445568999999999999999999999999999999 488876544 39999999999999998 67789999999
Q ss_pred Cccccccc
Q psy1757 88 DPKRVTKR 95 (348)
Q Consensus 88 ~v~~a~~~ 95 (348)
.|+++.++
T Consensus 85 ~V~~a~~~ 92 (96)
T 2e44_A 85 KVAYIPDE 92 (96)
T ss_dssp EEEECCCC
T ss_pred EEEEcCcc
Confidence 99998765
No 297
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.5e-15 Score=112.32 Aligned_cols=76 Identities=26% Similarity=0.482 Sum_probs=69.0
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-C-CeeCCeEEEE
Q psy1757 96 VNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-K-QVICGKEVDV 173 (348)
Q Consensus 96 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~-~~i~G~~i~v 173 (348)
.....++|||+|||.++++++|+++|++||.|+.|+++++ +|||||+|.+.++|++|++.+ + ..++|++|.|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 3456789999999999999999999999999999999863 789999999999999999986 5 8899999999
Q ss_pred EEcc
Q psy1757 174 KRVK 177 (348)
Q Consensus 174 ~~a~ 177 (348)
++++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9974
No 298
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.2e-15 Score=121.43 Aligned_cols=78 Identities=12% Similarity=0.127 Sum_probs=69.4
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCcc
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPK 90 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~ 90 (348)
...+.++|||+|||.++|+++|+++|++||.|.+|.|++ ++|||||+|.+.++|++||+ +++..+.++.|.|+
T Consensus 6 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 79 (111)
T 1whx_A 6 SGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLE 79 (111)
T ss_dssp TSEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 344678999999999999999999999999999998875 45899999999999999998 57789999999999
Q ss_pred ccccc
Q psy1757 91 RVTKR 95 (348)
Q Consensus 91 ~a~~~ 95 (348)
++...
T Consensus 80 ~a~~~ 84 (111)
T 1whx_A 80 WAPIG 84 (111)
T ss_dssp EEETT
T ss_pred ECCCC
Confidence 98653
No 299
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.58 E-value=8.9e-16 Score=114.80 Aligned_cols=72 Identities=21% Similarity=0.324 Sum_probs=65.2
Q ss_pred CceEEEcCCCCCC------CHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCe-EE
Q psy1757 100 KCKIFVGGLTTEI------TEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGK-EV 171 (348)
Q Consensus 100 ~~~l~V~nLp~~~------te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~-~i 171 (348)
+++|||+|||..+ ++++|+++|++||.|++|+++ +.+++++|||||+|.+.++|++|++.++ ..|.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 779999999999999999987 4578999999999999999999999885 889998 77
Q ss_pred EE
Q psy1757 172 DV 173 (348)
Q Consensus 172 ~v 173 (348)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 65
No 300
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.58 E-value=1.2e-15 Score=128.87 Aligned_cols=81 Identities=38% Similarity=0.610 Sum_probs=76.2
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCcccccc
Q psy1757 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVTK 94 (348)
Q Consensus 15 ~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~a~~ 94 (348)
..++|||+|||.++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|++|+++++..+.|+.|.|+++.+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 46799999999999999999999999999999999998899999999999999999999999777899999999999865
Q ss_pred c
Q psy1757 95 R 95 (348)
Q Consensus 95 ~ 95 (348)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 301
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.1e-15 Score=118.07 Aligned_cols=78 Identities=24% Similarity=0.492 Sum_probs=69.1
Q ss_pred cCCCceEEEcCCCC-CCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEE
Q psy1757 97 NPLKCKIFVGGLTT-EITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVK 174 (348)
Q Consensus 97 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~ 174 (348)
.+..++|||+|||+ ++++++|+++|++||.|+.|+|. +|||||+|.+.++|++|++.+ +..+.|++|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678999999998 99999999999999999999983 679999999999999999987 488999999999
Q ss_pred EcccCCCC
Q psy1757 175 RVKFNPET 182 (348)
Q Consensus 175 ~a~~~~~~ 182 (348)
+++++...
T Consensus 79 ~a~~~~~~ 86 (96)
T 2kvi_A 79 VSSSNARP 86 (96)
T ss_dssp EEECCCC-
T ss_pred EcCcCCCC
Confidence 99877553
No 302
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.58 E-value=4.2e-15 Score=129.86 Aligned_cols=78 Identities=12% Similarity=0.279 Sum_probs=73.4
Q ss_pred CCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCeecCcccccc
Q psy1757 16 ERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVTK 94 (348)
Q Consensus 16 ~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~i~v~~a~~ 94 (348)
.++|||+|||.++|+++|+++|++||.|.+|+|+++. ++.++|||||+|++.++|++||+..+..+.|+.|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 5899999999999999999999999999999999986 69999999999999999999999888899999999988754
No 303
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=2.6e-15 Score=122.31 Aligned_cols=82 Identities=12% Similarity=0.209 Sum_probs=72.4
Q ss_pred cCCCceEEEcCCCCCCCHHHHH----HHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVR----DYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEV 171 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i 171 (348)
....++|||+||++.+++++|+ ++|++||.|++|.+.. ++++||||||+|.+.++|++|++.++ ..|.|++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3456899999999999999876 6999999999988754 46789999999999999999999885 88999999
Q ss_pred EEEEcccCCC
Q psy1757 172 DVKRVKFNPE 181 (348)
Q Consensus 172 ~v~~a~~~~~ 181 (348)
.|.+++.+..
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9999987643
No 304
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.4e-15 Score=118.57 Aligned_cols=77 Identities=23% Similarity=0.398 Sum_probs=69.5
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~ 175 (348)
....++|||+|||.++++++|+++|++||.|++|++.+ ++|||||+|.+.++|++|++.+ +..++|+.|+|++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 34568999999999999999999999999999999873 5789999999999999999887 5899999999999
Q ss_pred cccC
Q psy1757 176 VKFN 179 (348)
Q Consensus 176 a~~~ 179 (348)
++++
T Consensus 98 a~~~ 101 (101)
T 2la4_A 98 GKER 101 (101)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8764
No 305
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.2e-15 Score=115.54 Aligned_cols=79 Identities=16% Similarity=0.280 Sum_probs=68.6
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCC-eeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCC-cccCCeecC
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGE-VESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGD-HYIGNKKID 88 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~-v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~-~~~~gr~i~ 88 (348)
.....++|||+|||.++|+++|+++|++||. |..+.++ ++|||||+|.+.++|++||+ +++ ..+.|+.|.
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 4467899999999999999999999999999 6666653 36899999999999999998 567 899999999
Q ss_pred ccccccccc
Q psy1757 89 PKRVTKRVN 97 (348)
Q Consensus 89 v~~a~~~~~ 97 (348)
|+++..+..
T Consensus 77 v~~a~~~~~ 85 (93)
T 2cqh_A 77 VDYSVSKKL 85 (93)
T ss_dssp EEECCCCCC
T ss_pred EEEccCccc
Confidence 999876543
No 306
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=6.2e-15 Score=113.38 Aligned_cols=78 Identities=19% Similarity=0.428 Sum_probs=68.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEEc
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKRV 176 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~a 176 (348)
...++|||+|||+++++++|+++|++||.|++| +.++.+++ ||||+|.+.++|++|++ + +..|+|+.|.|+++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 345799999999999999999999999999987 45555554 99999999999999999 6 58999999999988
Q ss_pred ccCCC
Q psy1757 177 KFNPE 181 (348)
Q Consensus 177 ~~~~~ 181 (348)
.++..
T Consensus 80 ~~~~~ 84 (94)
T 2e5g_A 80 EQKEF 84 (94)
T ss_dssp CCSCC
T ss_pred CcCCC
Confidence 76654
No 307
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.58 E-value=2.1e-15 Score=121.27 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=68.2
Q ss_pred CEEEEcCC----CCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecC----HHH----HHHHHH--h-CCcc
Q psy1757 17 RKLFVGGL----HRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTT----QKA----VDDLLA--A-GDHY 81 (348)
Q Consensus 17 ~~lfVgnL----p~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~----~e~----A~~Al~--~-~~~~ 81 (348)
.+|||+|| |+++++++|+++|++||+|.+|.++.|+.|++++|||||+|.+ +++ |.+|++ . ++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 9999999999999999999999999999999999999999996 322 788887 3 6779
Q ss_pred cCCeecCccccc
Q psy1757 82 IGNKKIDPKRVT 93 (348)
Q Consensus 82 ~~gr~i~v~~a~ 93 (348)
|.|+.|+|..-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999988653
No 308
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.57 E-value=1e-14 Score=127.38 Aligned_cols=113 Identities=16% Similarity=0.247 Sum_probs=88.7
Q ss_pred CHHHHHHHHHhC--C-cccCCeecCcccccccc----------cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccC
Q psy1757 67 TQKAVDDLLAAG--D-HYIGNKKIDPKRVTKRV----------NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQP 133 (348)
Q Consensus 67 ~~e~A~~Al~~~--~-~~~~gr~i~v~~a~~~~----------~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~ 133 (348)
+.+.+..|+... . ..+......+....... ....++|||+|||+++++++|+++|++||.|..|+|+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 567777788765 2 24444333333332111 1124899999999999999999999999999999998
Q ss_pred CCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEEcccCC
Q psy1757 134 FDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFNP 180 (348)
Q Consensus 134 ~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~a~~~~ 180 (348)
++.. +.++|||||+|.+.++|++|++.++..++|++|.|.+++.-.
T Consensus 143 ~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 143 RTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDYF 188 (193)
T ss_dssp ECTT-CCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC-
T ss_pred ECCC-CCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHHH
Confidence 8764 889999999999999999999998889999999999877643
No 309
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.6e-15 Score=116.23 Aligned_cols=79 Identities=16% Similarity=0.344 Sum_probs=70.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEEc
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKRV 176 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~a 176 (348)
...++|||+|||+++++++|+++|++||.|+ ++++.+ .++|||||+|.+.++|++|++.+ +..|+|+.|.|+++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4468999999999999999999999999997 666643 56889999999999999999887 48899999999999
Q ss_pred ccCCC
Q psy1757 177 KFNPE 181 (348)
Q Consensus 177 ~~~~~ 181 (348)
+++..
T Consensus 92 ~~~~~ 96 (97)
T 2e5j_A 92 RQQRD 96 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 310
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.57 E-value=9.3e-15 Score=128.67 Aligned_cols=84 Identities=18% Similarity=0.491 Sum_probs=78.0
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCcccc
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKRV 92 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~a 92 (348)
...++|||+|||.++|+++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+ +++..|.|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 456899999999999999999999999999999999999899999999999999999999999 5778999999999998
Q ss_pred ccccc
Q psy1757 93 TKRVN 97 (348)
Q Consensus 93 ~~~~~ 97 (348)
..+..
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 76543
No 311
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.8e-14 Score=111.46 Aligned_cols=79 Identities=20% Similarity=0.343 Sum_probs=69.3
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecC
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKID 88 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~ 88 (348)
.......++|||+|| ++|+++|+++|++||+|.+|.|. +++|||||+|.+.++|++||+. ++..+.++.|.
T Consensus 9 ~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 80 (97)
T 1x5p_A 9 RRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK 80 (97)
T ss_dssp CCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred cCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 344567899999996 89999999999999999999985 3568999999999999999975 67799999999
Q ss_pred cccccccc
Q psy1757 89 PKRVTKRV 96 (348)
Q Consensus 89 v~~a~~~~ 96 (348)
|+++..+.
T Consensus 81 v~~a~~~~ 88 (97)
T 1x5p_A 81 VNIARKQP 88 (97)
T ss_dssp EECCSSCC
T ss_pred EEECCCCC
Confidence 99987654
No 312
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.4e-15 Score=120.89 Aligned_cols=80 Identities=18% Similarity=0.182 Sum_probs=70.9
Q ss_pred cCCCceEEEcCCCCC-CCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC---CeeCCeEEE
Q psy1757 97 NPLKCKIFVGGLTTE-ITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK---QVICGKEVD 172 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~---~~i~G~~i~ 172 (348)
...+++|||+|||++ +++++|+++|++||.|++|+|++ +||||||+|++.++|++|++.++ ..|.|++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345789999999998 99999999999999999999974 37899999999999999999763 569999999
Q ss_pred EEEcccCCCC
Q psy1757 173 VKRVKFNPET 182 (348)
Q Consensus 173 v~~a~~~~~~ 182 (348)
|.+++.+...
T Consensus 96 V~~a~~~~~~ 105 (112)
T 1x4f_A 96 VDLSEKYKKL 105 (112)
T ss_dssp EEEECSCSSS
T ss_pred EEECcccccc
Confidence 9999877654
No 313
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.57 E-value=4e-15 Score=113.07 Aligned_cols=74 Identities=14% Similarity=0.252 Sum_probs=67.6
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCcccc
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKRV 92 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~a 92 (348)
...++|||+|||.++|+++|+++|++| .|.+|+|. +++|||||+|.+.++|++|++ +++..+.|+.|.|+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 467899999999999999999999999 99999884 578999999999999999999 5778999999999987
Q ss_pred cc
Q psy1757 93 TK 94 (348)
Q Consensus 93 ~~ 94 (348)
..
T Consensus 76 ~~ 77 (88)
T 1wg1_A 76 PT 77 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 314
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.56 E-value=8.5e-15 Score=124.31 Aligned_cols=81 Identities=26% Similarity=0.544 Sum_probs=75.6
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCcc
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPK 90 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~ 90 (348)
.....++|||+|||.++|+++|+++|++||+|.+|+|++++.++.++|||||+|.+.++|++|++ +++..+.|+.|.|+
T Consensus 90 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 169 (172)
T 2g4b_A 90 PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 169 (172)
T ss_dssp CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34557999999999999999999999999999999999998899999999999999999999998 57889999999998
Q ss_pred cc
Q psy1757 91 RV 92 (348)
Q Consensus 91 ~a 92 (348)
++
T Consensus 170 ~A 171 (172)
T 2g4b_A 170 RA 171 (172)
T ss_dssp EC
T ss_pred eC
Confidence 76
No 315
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=7.1e-15 Score=117.32 Aligned_cols=78 Identities=22% Similarity=0.397 Sum_probs=68.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCC---CccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEE
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSK---NMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVK 174 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~---g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~ 174 (348)
...++|||+|||+++++++|+++|++||.|+ +.++.+..+ ++++|||||+|.+.++|++||+.+ ..++|+.+.+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~~ 83 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLCV 83 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEec
Confidence 3568999999999999999999999999999 888888777 799999999999999999999987 34777777765
Q ss_pred Ecc
Q psy1757 175 RVK 177 (348)
Q Consensus 175 ~a~ 177 (348)
.+.
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 443
No 316
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.56 E-value=4.3e-15 Score=117.57 Aligned_cols=77 Identities=17% Similarity=0.459 Sum_probs=70.0
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~ 175 (348)
....++|||+|||.++++++|+++|++||.|+.|++. +|||||+|.+.++|++|++.+ +..|+|+.|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3456899999999999999999999999999999987 679999999999999999986 5889999999999
Q ss_pred cccCCC
Q psy1757 176 VKFNPE 181 (348)
Q Consensus 176 a~~~~~ 181 (348)
++++..
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 988754
No 317
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.56 E-value=3.3e-15 Score=115.38 Aligned_cols=82 Identities=17% Similarity=0.351 Sum_probs=73.4
Q ss_pred cCCCceEEEcCCCCCCCHHHHH----HHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVR----DYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEV 171 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i 171 (348)
.+.+++|||+|||.++++++|+ ++|++||.|+.|++.. ++.++|||||+|.+.++|++|++.+ +..++|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3456899999999999999999 9999999999999874 4678899999999999999999986 588999999
Q ss_pred EEEEcccCCC
Q psy1757 172 DVKRVKFNPE 181 (348)
Q Consensus 172 ~v~~a~~~~~ 181 (348)
.|.+++++..
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999988654
No 318
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.56 E-value=5e-15 Score=127.62 Aligned_cols=82 Identities=18% Similarity=0.373 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEc
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRV 176 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a 176 (348)
...++|||+|||+.+++++|+++|++||.|+.|.|+.+. ++.++|||||+|.+.++|++|++.++ ..|+|+.|.|.++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 346899999999999999999999999999999999988 89999999999999999999999875 8899999999998
Q ss_pred ccCC
Q psy1757 177 KFNP 180 (348)
Q Consensus 177 ~~~~ 180 (348)
....
T Consensus 165 ~~~~ 168 (177)
T 2f3j_A 165 ASQI 168 (177)
T ss_dssp SSGG
T ss_pred cCCC
Confidence 7653
No 319
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.56 E-value=3.9e-15 Score=119.08 Aligned_cols=72 Identities=15% Similarity=0.274 Sum_probs=62.1
Q ss_pred CCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCccc
Q psy1757 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKR 91 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~ 91 (348)
....++|||+|||.++|+++|+++|++||+|++|.|+.+ |||||+|.+.++|++||+ +++..|+|+.|.+.+
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 356799999999999999999999999999999999876 799999999999999999 577899998855443
No 320
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.5e-14 Score=111.89 Aligned_cols=78 Identities=18% Similarity=0.331 Sum_probs=69.4
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKR 175 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~ 175 (348)
....++|||+|| ++++++|+++|++||.|+.|+|. .++|||||+|.+.++|++|++.++ ..|+|++|.|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345689999996 89999999999999999999984 457899999999999999998875 889999999999
Q ss_pred cccCCCC
Q psy1757 176 VKFNPET 182 (348)
Q Consensus 176 a~~~~~~ 182 (348)
++++...
T Consensus 84 a~~~~~~ 90 (97)
T 1x5p_A 84 ARKQPML 90 (97)
T ss_dssp CSSCCCC
T ss_pred CCCCCCC
Confidence 9887653
No 321
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.55 E-value=5.1e-15 Score=111.85 Aligned_cols=73 Identities=22% Similarity=0.465 Sum_probs=66.0
Q ss_pred CCCCCEEEEcCCCCcccHHHHHHHhhcC----C-------CeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcc
Q psy1757 13 RNDERKLFVGGLHRNTGEKEINDYFSQY----G-------EVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHY 81 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~~L~~~F~~~----G-------~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~ 81 (348)
..+.++|||+|||.++|+++|+++|++| | .|.+|++.++ +|||||+|.+.++|++|+.+++..
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~ 76 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGII 76 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCE
Confidence 3567999999999999999999999999 8 9999998865 589999999999999999767789
Q ss_pred cCCeecCccc
Q psy1757 82 IGNKKIDPKR 91 (348)
Q Consensus 82 ~~gr~i~v~~ 91 (348)
+.|+.|.|++
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999988764
No 322
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.55 E-value=7.1e-15 Score=130.12 Aligned_cols=82 Identities=24% Similarity=0.406 Sum_probs=75.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEcc
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVK 177 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~ 177 (348)
..++|||+|||+++|+++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++|++.++ ..+.|+.|++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 45799999999999999999999999999999999999999999999999999999999999875 78999999999876
Q ss_pred cCC
Q psy1757 178 FNP 180 (348)
Q Consensus 178 ~~~ 180 (348)
...
T Consensus 94 ~~~ 96 (213)
T 4f02_A 94 RDP 96 (213)
T ss_dssp CCT
T ss_pred ccc
Confidence 543
No 323
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.55 E-value=8.5e-15 Score=143.28 Aligned_cols=83 Identities=20% Similarity=0.422 Sum_probs=77.0
Q ss_pred CCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCccc
Q psy1757 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDPKR 91 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v~~ 91 (348)
....++|||+|||.++|+++|.++|++||.|+.|.|+.++.++.++|||||+|.+.++|++||+. ++..|.|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44568999999999999999999999999999999999998999999999999999999999975 67899999999999
Q ss_pred cccc
Q psy1757 92 VTKR 95 (348)
Q Consensus 92 a~~~ 95 (348)
+...
T Consensus 179 a~~~ 182 (437)
T 3pgw_S 179 ERGR 182 (437)
T ss_pred eCCC
Confidence 8754
No 324
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.55 E-value=1.2e-14 Score=112.68 Aligned_cols=75 Identities=24% Similarity=0.515 Sum_probs=68.4
Q ss_pred cCCCceEEEcCCCC-CCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEE
Q psy1757 97 NPLKCKIFVGGLTT-EITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVK 174 (348)
Q Consensus 97 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~ 174 (348)
.+..++|||+|||+ ++++++|+++|++||.|++|++. +|||||+|.+.++|++|++.+ +..++|++|.|+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34578999999998 99999999999999999999983 679999999999999999977 488999999999
Q ss_pred EcccC
Q psy1757 175 RVKFN 179 (348)
Q Consensus 175 ~a~~~ 179 (348)
+++.+
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98765
No 325
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.55 E-value=1.6e-14 Score=125.47 Aligned_cols=84 Identities=25% Similarity=0.546 Sum_probs=78.2
Q ss_pred CCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCccc
Q psy1757 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKR 91 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~ 91 (348)
....++|||+|||.++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|++|++ +++..+.|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3677999999999999999999999999999999999998899999999999999999999999 578899999999999
Q ss_pred ccccc
Q psy1757 92 VTKRV 96 (348)
Q Consensus 92 a~~~~ 96 (348)
+.++.
T Consensus 191 a~~~~ 195 (198)
T 2yh0_A 191 ASVGA 195 (198)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87653
No 326
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.54 E-value=2.1e-15 Score=125.21 Aligned_cols=84 Identities=20% Similarity=0.285 Sum_probs=71.7
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEE------EEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccC
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESI------SIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIG 83 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i------~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~ 83 (348)
.....+++|||+|||.++|+++|+++|++||.|.+| .|.. ..++.++|||||+|.+.++|++||+ +++..+.
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL-MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEE-EEETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEe-ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 335678999999999999999999999999998774 1111 2378899999999999999999999 5778999
Q ss_pred CeecCccccccc
Q psy1757 84 NKKIDPKRVTKR 95 (348)
Q Consensus 84 gr~i~v~~a~~~ 95 (348)
|+.|.|.++...
T Consensus 119 g~~l~V~~a~~~ 130 (143)
T 3egn_A 119 GKPMVVQFARSA 130 (143)
T ss_dssp TEECEEEECCCS
T ss_pred CcEEEEEECCCC
Confidence 999999998654
No 327
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=5.4e-15 Score=117.54 Aligned_cols=76 Identities=13% Similarity=0.173 Sum_probs=69.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEcc
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVK 177 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~ 177 (348)
..++|||+|||.++++++|+++|++||.|+.|.|+. +++||||+|.+.++|++|++.++ ..|.|+.|.|.|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457999999999999999999999999999999875 46799999999999999999875 88999999999998
Q ss_pred cCC
Q psy1757 178 FNP 180 (348)
Q Consensus 178 ~~~ 180 (348)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 653
No 328
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.53 E-value=6.7e-15 Score=122.13 Aligned_cols=85 Identities=25% Similarity=0.433 Sum_probs=73.4
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCcccc--ccCCC---CCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEF--QQPFD---KSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKE 170 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v--~i~~~---~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~ 170 (348)
...+++|||+|||+++++++|+++|++||.|..+ +++.+ ..+++++|||||+|.+.++|.+|++.+ +..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3456899999999999999999999999999886 22333 346889999999999999999999987 48999999
Q ss_pred EEEEEcccCCC
Q psy1757 171 VDVKRVKFNPE 181 (348)
Q Consensus 171 i~v~~a~~~~~ 181 (348)
|.|.++++...
T Consensus 122 l~V~~a~~~~~ 132 (143)
T 3egn_A 122 MVVQFARSARP 132 (143)
T ss_dssp CEEEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999987654
No 329
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.53 E-value=1.7e-14 Score=121.50 Aligned_cols=81 Identities=20% Similarity=0.331 Sum_probs=76.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEEccc
Q psy1757 100 KCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKRVKF 178 (348)
Q Consensus 100 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~a~~ 178 (348)
+++|||+|||.++++++|+++|++||.|.+|+++.++.++.++|+|||+|.+.++|++|++.+ +..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 578999999999999999999999999999999999989999999999999999999999976 5899999999999886
Q ss_pred CC
Q psy1757 179 NP 180 (348)
Q Consensus 179 ~~ 180 (348)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 330
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1e-14 Score=117.30 Aligned_cols=77 Identities=26% Similarity=0.415 Sum_probs=68.7
Q ss_pred ceEEEcCC----CCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECC----HHH----HHHHHH--cC-CCe
Q psy1757 101 CKIFVGGL----TTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDD----QNV----ADQVLK--NP-KQV 165 (348)
Q Consensus 101 ~~l~V~nL----p~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~----~e~----A~~Al~--~~-~~~ 165 (348)
.+|||+|| ++.+++++|+++|++||+|.+|+++.|++|++++|||||+|.+ +++ |.+|++ .+ +..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999995 333 788888 55 489
Q ss_pred eCCeEEEEEEcc
Q psy1757 166 ICGKEVDVKRVK 177 (348)
Q Consensus 166 i~G~~i~v~~a~ 177 (348)
|+|++|+|...+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998754
No 331
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.1e-14 Score=112.18 Aligned_cols=80 Identities=11% Similarity=0.138 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccc-cCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEE
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQ-QPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKR 175 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~-i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~ 175 (348)
...++|||+|||+++++++|+++|++||.|+.|+ |+.++.++ .|||+|.+.++|++|++.+ +..|+|++|.|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3468999999999999999999999999999994 88876654 3999999999999999977 4889999999999
Q ss_pred cccCCC
Q psy1757 176 VKFNPE 181 (348)
Q Consensus 176 a~~~~~ 181 (348)
++++..
T Consensus 89 a~~~~~ 94 (96)
T 2e44_A 89 IPDEMA 94 (96)
T ss_dssp CCCCCS
T ss_pred cCcccc
Confidence 998743
No 332
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.53 E-value=2e-14 Score=109.19 Aligned_cols=75 Identities=17% Similarity=0.211 Sum_probs=68.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEcc
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVK 177 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~ 177 (348)
..++|||+|||+++++++|+++|++| .|+++++. +++|||||+|.+.++|++|++.++ ..+.|++|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45789999999999999999999999 99999884 578999999999999999999875 88999999999987
Q ss_pred cCC
Q psy1757 178 FNP 180 (348)
Q Consensus 178 ~~~ 180 (348)
.+.
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 333
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.52 E-value=4.4e-14 Score=119.28 Aligned_cols=82 Identities=21% Similarity=0.436 Sum_probs=73.5
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCC--eec
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGN--KKI 87 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~g--r~i 87 (348)
......++|||+|||.++|+++|+++|++||.|.+|.|++++.++.++|||||+|.+.++|++|++ +++..+.| +.|
T Consensus 84 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l 163 (168)
T 1b7f_A 84 GESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPL 163 (168)
T ss_dssp SSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCC
T ss_pred cccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEE
Confidence 344567999999999999999999999999999999999998899999999999999999999999 56778877 777
Q ss_pred Ccccc
Q psy1757 88 DPKRV 92 (348)
Q Consensus 88 ~v~~a 92 (348)
.|+++
T Consensus 164 ~V~~A 168 (168)
T 1b7f_A 164 SVRLA 168 (168)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 77653
No 334
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.52 E-value=2.4e-14 Score=120.87 Aligned_cols=81 Identities=15% Similarity=0.154 Sum_probs=69.2
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCC--eec
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGN--KKI 87 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~g--r~i 87 (348)
..++...+|||+||++++|+++|+++|++||+|++|+|..++ ++|||||+|++.++|++|++. ++..|.+ +.|
T Consensus 41 ~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L 116 (164)
T 1sjr_A 41 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 116 (164)
T ss_dssp CCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCE
T ss_pred CCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEE
Confidence 344555779999999999999999999999999999997542 579999999999999999995 5678855 899
Q ss_pred Cccccccc
Q psy1757 88 DPKRVTKR 95 (348)
Q Consensus 88 ~v~~a~~~ 95 (348)
+|++++.+
T Consensus 117 ~V~~Ak~~ 124 (164)
T 1sjr_A 117 RIDFSKLT 124 (164)
T ss_dssp EEEECSSS
T ss_pred EEEEecCC
Confidence 99988754
No 335
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.9e-14 Score=114.58 Aligned_cols=76 Identities=14% Similarity=0.274 Sum_probs=62.1
Q ss_pred CCCCCCCEEEE--cCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCccc-----
Q psy1757 11 PGRNDERKLFV--GGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYI----- 82 (348)
Q Consensus 11 ~~~~~~~~lfV--gnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~----- 82 (348)
...+.+++||| +||++++|+++|+++|++||+|.+|.|+.+ ||||||+|.+.++|++|++. +++++
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 44556899999 779999999999999999999999988643 68999999999999999985 44555
Q ss_pred CCeecCcccc
Q psy1757 83 GNKKIDPKRV 92 (348)
Q Consensus 83 ~gr~i~v~~a 92 (348)
.++.|.+..+
T Consensus 94 ~g~~l~v~~a 103 (114)
T 2cq2_A 94 QKITLYLNFV 103 (114)
T ss_dssp CEEECEEEEE
T ss_pred CCcEEEEEec
Confidence 4555555444
No 336
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.51 E-value=3.5e-14 Score=119.93 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=69.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCC--eEEEEEEc
Q psy1757 100 KCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICG--KEVDVKRV 176 (348)
Q Consensus 100 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G--~~i~v~~a 176 (348)
..+|||+||++.+++++|+++|++||.|++|.|+.++ ++|||||+|.+.++|++|++.|+ ..|.+ ++|+|.++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 4679999999999999999999999999999986442 57899999999999999999985 77855 99999999
Q ss_pred ccCCC
Q psy1757 177 KFNPE 181 (348)
Q Consensus 177 ~~~~~ 181 (348)
+++..
T Consensus 122 k~~~l 126 (164)
T 1sjr_A 122 KLTSL 126 (164)
T ss_dssp SSSSC
T ss_pred cCCcc
Confidence 98754
No 337
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.51 E-value=1.4e-14 Score=115.56 Aligned_cols=81 Identities=16% Similarity=0.288 Sum_probs=72.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEEc
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKRV 176 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~a 176 (348)
...++|||+|||.++++++|+++|++||.|+.|.|+.+ +.++|||||+|.+.++|++|++.+ +..++|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 35689999999999999999999999999999999876 345899999999999999999976 58899999999999
Q ss_pred ccCCC
Q psy1757 177 KFNPE 181 (348)
Q Consensus 177 ~~~~~ 181 (348)
.++..
T Consensus 83 ~~~~~ 87 (115)
T 3lqv_A 83 NANRA 87 (115)
T ss_dssp CHHHH
T ss_pred cCChh
Confidence 87543
No 338
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.8e-14 Score=112.76 Aligned_cols=78 Identities=12% Similarity=0.187 Sum_probs=68.8
Q ss_pred CCCceEEE--cCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-Cee-----CCe
Q psy1757 98 PLKCKIFV--GGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVI-----CGK 169 (348)
Q Consensus 98 ~~~~~l~V--~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i-----~G~ 169 (348)
...++||| +||++++++++|+++|++||.|++|.|+.+ ||||||+|.+.++|++|++.++ .+| .++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 34678999 779999999999999999999999988753 7899999999999999999985 777 689
Q ss_pred EEEEEEcccCCC
Q psy1757 170 EVDVKRVKFNPE 181 (348)
Q Consensus 170 ~i~v~~a~~~~~ 181 (348)
+|.|.+++..+.
T Consensus 97 ~l~v~~a~~~p~ 108 (114)
T 2cq2_A 97 TLYLNFVEKVQW 108 (114)
T ss_dssp ECEEEEESCCCC
T ss_pred EEEEEecccCcc
Confidence 999999886654
No 339
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.49 E-value=5.5e-14 Score=113.49 Aligned_cols=78 Identities=21% Similarity=0.347 Sum_probs=68.3
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCc
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDP 89 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v 89 (348)
......++|||+|| ++|+++|+++|++||+|.+|.|. .++|||||+|.+.++|++||+ +++..+.|+.|.|
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 44567899999996 79999999999999999999986 356899999999999999996 5778999999999
Q ss_pred ccccccc
Q psy1757 90 KRVTKRV 96 (348)
Q Consensus 90 ~~a~~~~ 96 (348)
.++..+.
T Consensus 106 ~~a~~~~ 112 (121)
T 2bz2_A 106 NIARKQP 112 (121)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 9987653
No 340
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.48 E-value=1.9e-13 Score=110.64 Aligned_cols=73 Identities=14% Similarity=0.069 Sum_probs=62.7
Q ss_pred CEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceE-EEEEecCHHHHHHHHH-hCCcccCC--eecCcccc
Q psy1757 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGF-AFVTYTTQKAVDDLLA-AGDHYIGN--KKIDPKRV 92 (348)
Q Consensus 17 ~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~-aFV~F~~~e~A~~Al~-~~~~~~~g--r~i~v~~a 92 (348)
-.|||+||++.+|+++|+++|++||.|++|+|... .|| |||+|.+.++|++|++ +++..|.+ +.|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 34679999999999999999999999999999752 276 9999999999999998 46778876 58888887
Q ss_pred ccc
Q psy1757 93 TKR 95 (348)
Q Consensus 93 ~~~ 95 (348)
..+
T Consensus 100 k~~ 102 (124)
T 2e5i_A 100 RPT 102 (124)
T ss_dssp SCS
T ss_pred cCC
Confidence 654
No 341
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.48 E-value=9.4e-14 Score=117.89 Aligned_cols=79 Identities=32% Similarity=0.499 Sum_probs=69.7
Q ss_pred CCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccC---CeecC
Q psy1757 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIG---NKKID 88 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~---gr~i~ 88 (348)
....++|||+|||.++|+++|+++|++||.|.+|+|++++ ++.++|||||+|.+.++|++|++. ++..+. ++.|.
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 3467899999999999999999999999999999999986 699999999999999999999975 555554 38888
Q ss_pred cccc
Q psy1757 89 PKRV 92 (348)
Q Consensus 89 v~~a 92 (348)
|+++
T Consensus 171 V~~a 174 (175)
T 3nmr_A 171 VKFA 174 (175)
T ss_dssp EEEC
T ss_pred EEec
Confidence 8765
No 342
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.47 E-value=2e-13 Score=107.38 Aligned_cols=82 Identities=12% Similarity=0.182 Sum_probs=70.8
Q ss_pred CCCCCEEEEcCCCC-----cccHHHHHHHhhcCCCeeEEEEeeCCCC-CCcceEEEEEecCHHHHHHHHH-hCCcccCCe
Q psy1757 13 RNDERKLFVGGLHR-----NTGEKEINDYFSQYGEVESISIKNDPYT-GQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNK 85 (348)
Q Consensus 13 ~~~~~~lfVgnLp~-----~~te~~L~~~F~~~G~v~~i~i~~d~~t-g~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr 85 (348)
...+++|+|.||.. +.++++|++.|++||.|++|+|++++.+ ++++||+||+|.+.++|++|++ +++..+.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35689999999962 3378999999999999999999998654 6899999999999999999998 577899999
Q ss_pred ecCcccccc
Q psy1757 86 KIDPKRVTK 94 (348)
Q Consensus 86 ~i~v~~a~~ 94 (348)
.|.+.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999988753
No 343
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.46 E-value=8.6e-14 Score=113.26 Aligned_cols=77 Identities=17% Similarity=0.241 Sum_probs=68.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceE-EEEEECCHHHHHHHHHcCC-CeeCC--eEEEEEE
Q psy1757 100 KCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGF-CFISFDDQNVADQVLKNPK-QVICG--KEVDVKR 175 (348)
Q Consensus 100 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~-aFV~F~~~e~A~~Al~~~~-~~i~G--~~i~v~~ 175 (348)
-.+|||+||++.+|+++|+++|++||.|++|+|+.+ .+|| |||+|.+.++|++|++.|+ ..|.+ +.|+|.+
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 367899999999999999999999999999988753 3677 9999999999999999985 88887 8999999
Q ss_pred cccCCC
Q psy1757 176 VKFNPE 181 (348)
Q Consensus 176 a~~~~~ 181 (348)
++++.-
T Consensus 103 ak~~~l 108 (130)
T 3zzy_A 103 SKLTSL 108 (130)
T ss_dssp CSCSSC
T ss_pred cCCCce
Confidence 998754
No 344
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.46 E-value=1.5e-13 Score=111.88 Aligned_cols=79 Identities=16% Similarity=0.214 Sum_probs=66.9
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceE-EEEEecCHHHHHHHHHh-CCcccCC--eec
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGF-AFVTYTTQKAVDDLLAA-GDHYIGN--KKI 87 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~-aFV~F~~~e~A~~Al~~-~~~~~~g--r~i 87 (348)
..+.--+|||+||+..+|+++|+++|++||+|.+|+|..+ .+|| |||+|.+.++|++|++. ++..|.+ +.|
T Consensus 24 ~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~L 98 (130)
T 3zzy_A 24 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 98 (130)
T ss_dssp -CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEE
T ss_pred CCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEE
Confidence 3344566789999999999999999999999999998764 2588 99999999999999984 6678877 888
Q ss_pred Cccccccc
Q psy1757 88 DPKRVTKR 95 (348)
Q Consensus 88 ~v~~a~~~ 95 (348)
+|++++..
T Consensus 99 rI~~ak~~ 106 (130)
T 3zzy_A 99 RIDFSKLT 106 (130)
T ss_dssp EEEECSCS
T ss_pred EEEecCCC
Confidence 89888654
No 345
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.46 E-value=1.5e-13 Score=103.73 Aligned_cols=70 Identities=24% Similarity=0.493 Sum_probs=63.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhc----C-------CccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCee
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQY----G-------SITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVI 166 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i 166 (348)
..++|||+|||+++++++|+++|++| | .|.++++.++ +|||||+|.+.++|++|+ .+ +..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 46899999999999999999999999 8 8888888754 789999999999999999 66 5899
Q ss_pred CCeEEEEEE
Q psy1757 167 CGKEVDVKR 175 (348)
Q Consensus 167 ~G~~i~v~~ 175 (348)
+|+.|+|++
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 346
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2.1e-13 Score=103.71 Aligned_cols=75 Identities=20% Similarity=0.213 Sum_probs=64.2
Q ss_pred CCCCCE-EEEcCCCCcccHHH----HHHHhhcC-CCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCe
Q psy1757 13 RNDERK-LFVGGLHRNTGEKE----INDYFSQY-GEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNK 85 (348)
Q Consensus 13 ~~~~~~-lfVgnLp~~~te~~----L~~~F~~~-G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr 85 (348)
..++.| |||+|||+++++++ |+++|++| |+|.+| ++ |+|||+|.+.++|++|++ +++..+.||
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 345666 99999999999988 55899999 599988 33 899999999999999997 577899999
Q ss_pred ecCccccccccc
Q psy1757 86 KIDPKRVTKRVN 97 (348)
Q Consensus 86 ~i~v~~a~~~~~ 97 (348)
.|++..+..+..
T Consensus 75 ~i~v~~A~~~sd 86 (96)
T 2diu_A 75 RIIVSFTPKNRE 86 (96)
T ss_dssp CCEEESSCCSCC
T ss_pred eEEEEecCCCcc
Confidence 999999876643
No 347
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.44 E-value=1.8e-13 Score=122.86 Aligned_cols=81 Identities=21% Similarity=0.328 Sum_probs=68.0
Q ss_pred CCCCCCCEEEEcCCCCcc---------cHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCc
Q psy1757 11 PGRNDERKLFVGGLHRNT---------GEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDH 80 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~---------te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~ 80 (348)
......++|||+||+.++ ++++|+++|++||+|++|+|+. +||||||+|.+.++|++|++. ++.
T Consensus 129 s~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 129 SFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp --CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTC
T ss_pred ccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCC
Confidence 345678999999999998 7999999999999999999986 369999999999999999985 566
Q ss_pred cc------------CCeecCccccccccc
Q psy1757 81 YI------------GNKKIDPKRVTKRVN 97 (348)
Q Consensus 81 ~~------------~gr~i~v~~a~~~~~ 97 (348)
.| .|+.|.|+|+.....
T Consensus 203 ~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 203 TLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EEeccccccccccCCCCEEEEEEccCCCC
Confidence 77 799999999976543
No 348
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.43 E-value=1.8e-13 Score=120.56 Aligned_cols=77 Identities=18% Similarity=0.293 Sum_probs=70.3
Q ss_pred CCceEEEcCCC-CCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEc
Q psy1757 99 LKCKIFVGGLT-TEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRV 176 (348)
Q Consensus 99 ~~~~l~V~nLp-~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a 176 (348)
.+++|||+||+ +.+++++|+++|++||.|.+|+|+++ ++|||||+|.+.++|++||+.++ ..+.|++|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46899999999 89999999999999999999999875 37899999999999999999875 8999999999998
Q ss_pred ccCC
Q psy1757 177 KFNP 180 (348)
Q Consensus 177 ~~~~ 180 (348)
+.+.
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7654
No 349
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.42 E-value=1.6e-13 Score=110.69 Aligned_cols=76 Identities=18% Similarity=0.341 Sum_probs=68.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEEEc
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVKRV 176 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~~a 176 (348)
...++|||+|| ++++++|+++|++||.|++|+|. .++|||||+|.+.++|++|++.+ +..|.|+.|.|.++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 45689999996 69999999999999999999985 46789999999999999999887 58899999999999
Q ss_pred ccCCC
Q psy1757 177 KFNPE 181 (348)
Q Consensus 177 ~~~~~ 181 (348)
+++..
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 88754
No 350
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.42 E-value=2.2e-13 Score=115.98 Aligned_cols=80 Identities=18% Similarity=0.319 Sum_probs=70.8
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCc
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDP 89 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v 89 (348)
......++|||+|||.++|+++|+++|++||.|..+ ..++.++|||||+|.+.++|++||+ +++..+.|+.|.|
T Consensus 94 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 168 (175)
T 1fje_B 94 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 168 (175)
T ss_dssp STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEE
T ss_pred cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344567999999999999999999999999988765 4588999999999999999999999 4778999999999
Q ss_pred cccccc
Q psy1757 90 KRVTKR 95 (348)
Q Consensus 90 ~~a~~~ 95 (348)
+++.++
T Consensus 169 ~~a~~k 174 (175)
T 1fje_B 169 YYTGEK 174 (175)
T ss_dssp EECSSC
T ss_pred EecCCC
Confidence 988654
No 351
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=1.8e-13 Score=104.10 Aligned_cols=72 Identities=17% Similarity=0.232 Sum_probs=63.5
Q ss_pred ceEEEcCCCCCCCHHH----HHHHHhhc-CCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEE
Q psy1757 101 CKIFVGGLTTEITEQD----VRDYFSQY-GSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVK 174 (348)
Q Consensus 101 ~~l~V~nLp~~~te~~----L~~~F~~~-G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~ 174 (348)
+.|||+|||+.+++++ |+++|++| |+|.+|. + |+|||+|.+.++|++|++.|+ ..|.||+|+|.
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt-------g---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT-------G---CSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC-------T---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe-------c---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 4499999999999988 55899999 4999882 2 899999999999999999884 89999999999
Q ss_pred EcccCCCC
Q psy1757 175 RVKFNPET 182 (348)
Q Consensus 175 ~a~~~~~~ 182 (348)
+++.+.+-
T Consensus 80 ~A~~~sd~ 87 (96)
T 2diu_A 80 FTPKNREL 87 (96)
T ss_dssp SSCCSCCC
T ss_pred ecCCCcce
Confidence 99988763
No 352
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.41 E-value=2e-13 Score=122.51 Aligned_cols=106 Identities=19% Similarity=0.188 Sum_probs=78.9
Q ss_pred HHHHHHhCCcccCCeecCcccccc-----cccCCCceEEEcCCCCCC---------CHHHHHHHHhhcCCccccccCCCC
Q psy1757 71 VDDLLAAGDHYIGNKKIDPKRVTK-----RVNPLKCKIFVGGLTTEI---------TEQDVRDYFSQYGSITEFQQPFDK 136 (348)
Q Consensus 71 A~~Al~~~~~~~~gr~i~v~~a~~-----~~~~~~~~l~V~nLp~~~---------te~~L~~~F~~~G~i~~v~i~~~~ 136 (348)
....|......+.|+......... ......++|||+||+..+ ++++|+++|++||.|++|+|+.
T Consensus 100 ~~~~~~~~~~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-- 177 (240)
T 3u1l_A 100 GKLALRTEVLDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-- 177 (240)
T ss_dssp HHHHHHCSSBCTTSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG--
T ss_pred hhhcccccCcccccchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC--
Confidence 333444444555676554433322 123457899999999998 7999999999999999999985
Q ss_pred CCCccceEEEEEECCHHHHHHHHHcCC-Cee------------CCeEEEEEEcccCCCC
Q psy1757 137 SKNMKKGFCFISFDDQNVADQVLKNPK-QVI------------CGKEVDVKRVKFNPET 182 (348)
Q Consensus 137 ~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i------------~G~~i~v~~a~~~~~~ 182 (348)
+||||||+|.+.++|+.|++.|+ ..| .|+.|.|+|++..+..
T Consensus 178 ----~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 178 ----SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp ----GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred ----CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCCH
Confidence 47899999999999999999884 677 8999999999987653
No 353
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.41 E-value=2.4e-13 Score=109.95 Aligned_cols=75 Identities=9% Similarity=0.057 Sum_probs=66.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceE-EEEEECCHHHHHHHHHcCC-CeeCC--eEEEEEEc
Q psy1757 101 CKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGF-CFISFDDQNVADQVLKNPK-QVICG--KEVDVKRV 176 (348)
Q Consensus 101 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~-aFV~F~~~e~A~~Al~~~~-~~i~G--~~i~v~~a 176 (348)
..|||+||++.+++++|+++|++||.|++|+|+.. .|| |||+|.+.++|++|++.|+ ..|.| +.|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 45789999999999999999999999999998642 276 9999999999999999885 78877 69999999
Q ss_pred ccCCC
Q psy1757 177 KFNPE 181 (348)
Q Consensus 177 ~~~~~ 181 (348)
+++..
T Consensus 100 k~~~l 104 (124)
T 2e5i_A 100 RPTRL 104 (124)
T ss_dssp SCSCC
T ss_pred cCCcc
Confidence 88754
No 354
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.41 E-value=5.2e-13 Score=105.00 Aligned_cols=82 Identities=11% Similarity=0.110 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCC-----CCCHHHHHHHHhhcCCccccccCCCCCC-CccceEEEEEECCHHHHHHHHHcCC-CeeCCeE
Q psy1757 98 PLKCKIFVGGLTT-----EITEQDVRDYFSQYGSITEFQQPFDKSK-NMKKGFCFISFDDQNVADQVLKNPK-QVICGKE 170 (348)
Q Consensus 98 ~~~~~l~V~nLp~-----~~te~~L~~~F~~~G~i~~v~i~~~~~~-g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~ 170 (348)
..+++|+|.||.. +.++++|+++|++||.|++|.|++++.+ ++++|++||+|.+.++|++|++.|+ ..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3567899999963 2378999999999999999999988654 6889999999999999999999885 8999999
Q ss_pred EEEEEcccC
Q psy1757 171 VDVKRVKFN 179 (348)
Q Consensus 171 i~v~~a~~~ 179 (348)
|.|.++...
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999998764
No 355
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.39 E-value=7.1e-13 Score=121.79 Aligned_cols=82 Identities=18% Similarity=0.367 Sum_probs=73.7
Q ss_pred cCCCceEEEcCCCCCCCHHHHH----HHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEE
Q psy1757 97 NPLKCKIFVGGLTTEITEQDVR----DYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEV 171 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i 171 (348)
...+++|||+|||+++++++|+ ++|++||.|++|+|.+ +++++|||||+|.+.++|++|++.++ ..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4567899999999999999977 8999999999999876 57789999999999999999998875 88999999
Q ss_pred EEEEcccCCC
Q psy1757 172 DVKRVKFNPE 181 (348)
Q Consensus 172 ~v~~a~~~~~ 181 (348)
.|.+++.+..
T Consensus 83 ~v~~a~~~~~ 92 (282)
T 3pgw_A 83 RIQYAKTDSD 92 (282)
T ss_pred EEEEeccCcc
Confidence 9999977653
No 356
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=4e-12 Score=98.89 Aligned_cols=78 Identities=15% Similarity=0.182 Sum_probs=65.3
Q ss_pred CCCCCEEEEcCCC-------CcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCe
Q psy1757 13 RNDERKLFVGGLH-------RNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNK 85 (348)
Q Consensus 13 ~~~~~~lfVgnLp-------~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr 85 (348)
....++|-|.-.. .++|+++|+++|++||+|.+|+|+. +++|||||+|++.++|++||+. ...+.++
T Consensus 7 ~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~ 80 (100)
T 2d9o_A 7 GQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQN-EVGLVDN 80 (100)
T ss_dssp CCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHT-CCBCSSS
T ss_pred CCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHh-cCCCCCC
Confidence 3446788887655 4589999999999999999999983 5789999999999999999998 4457799
Q ss_pred ecCcccccccc
Q psy1757 86 KIDPKRVTKRV 96 (348)
Q Consensus 86 ~i~v~~a~~~~ 96 (348)
.|.|+++..+.
T Consensus 81 ~l~V~~a~~~~ 91 (100)
T 2d9o_A 81 PLKISWLEGQP 91 (100)
T ss_dssp BCEEECSSCCC
T ss_pred eEEEEEccCCC
Confidence 99999986553
No 357
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=3.8e-12 Score=101.06 Aligned_cols=81 Identities=17% Similarity=0.322 Sum_probs=68.4
Q ss_pred CCCceEEEcCCCCCCC-----------HHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-Ce
Q psy1757 98 PLKCKIFVGGLTTEIT-----------EQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QV 165 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~t-----------e~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~ 165 (348)
..+++|+|.||....+ +++|+++|++||.|++|.| .++ .++|||||+|.+.++|++|++.++ ..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 4568899999944332 6899999999999999966 443 279999999999999999999885 88
Q ss_pred eCCeEEEEEEcccCCCC
Q psy1757 166 ICGKEVDVKRVKFNPET 182 (348)
Q Consensus 166 i~G~~i~v~~a~~~~~~ 182 (348)
|+|++|.|.++.++...
T Consensus 89 ~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 89 FGGRQITAQAWDGTTDY 105 (112)
T ss_dssp ETTEECEEEECCSCCCS
T ss_pred ECCcEEEEEEeCCCCCc
Confidence 99999999999887653
No 358
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=5.5e-12 Score=100.10 Aligned_cols=82 Identities=13% Similarity=0.302 Sum_probs=67.9
Q ss_pred CCCCCCCEEEEcCCCCcc-----------cHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-C
Q psy1757 11 PGRNDERKLFVGGLHRNT-----------GEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-G 78 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~-----------te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~ 78 (348)
.....+++|+|.||.... ++++|+++|++||.|.+|.| .++ .++|||||+|.+.++|++||+. +
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 355678999999994332 26899999999999999966 444 3799999999999999999974 6
Q ss_pred CcccCCeecCcccccccc
Q psy1757 79 DHYIGNKKIDPKRVTKRV 96 (348)
Q Consensus 79 ~~~~~gr~i~v~~a~~~~ 96 (348)
+..+.|+.|.|.++..+.
T Consensus 86 g~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp TCEETTEECEEEECCSCC
T ss_pred CCEECCcEEEEEEeCCCC
Confidence 679999999999986643
No 359
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.33 E-value=3.3e-12 Score=116.40 Aligned_cols=81 Identities=20% Similarity=0.311 Sum_probs=71.3
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhC-C-cccC---CeecC
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG-D-HYIG---NKKID 88 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~-~-~~~~---gr~i~ 88 (348)
...++|||+|||.++|+++|+++|++||.|.+|+|+.+. +++++|||||+|.+.++|.+||+.+ + ..+. ++.|.
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 356899999999999999999999999999999999994 9999999999999999999999974 3 3333 88888
Q ss_pred ccccccc
Q psy1757 89 PKRVTKR 95 (348)
Q Consensus 89 v~~a~~~ 95 (348)
|.++...
T Consensus 173 v~~~~~~ 179 (261)
T 3sde_A 173 VEPMEQF 179 (261)
T ss_dssp EEECCCE
T ss_pred Eeecccc
Confidence 8887654
No 360
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.32 E-value=1.3e-12 Score=116.72 Aligned_cols=80 Identities=20% Similarity=0.317 Sum_probs=72.4
Q ss_pred cCCCceEEEcCCCC-CCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEEEE
Q psy1757 97 NPLKCKIFVGGLTT-EITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVDVK 174 (348)
Q Consensus 97 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~v~ 174 (348)
.+.+++|||+|||+ ++++++|+++|++||.|++|+|++++ +|||||+|.+.++|++|++.+ +..|.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45678999999999 99999999999999999999998875 789999999999999999876 588999999999
Q ss_pred EcccCCC
Q psy1757 175 RVKFNPE 181 (348)
Q Consensus 175 ~a~~~~~ 181 (348)
+++....
T Consensus 106 ~a~~~~~ 112 (229)
T 2adc_A 106 LSKHQNV 112 (229)
T ss_dssp CCSCCCC
T ss_pred EecCccc
Confidence 9987643
No 361
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=6.4e-12 Score=97.75 Aligned_cols=67 Identities=12% Similarity=0.273 Sum_probs=59.2
Q ss_pred CCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEEEEcccCCCC
Q psy1757 110 TEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFNPET 182 (348)
Q Consensus 110 ~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v~~a~~~~~~ 182 (348)
..+++++|+++|++||.|++|.|+ ++++|||||+|.+.++|++|++.+ ..+.+++|.|.|++++...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~-~~~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNE-VGLVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTC-CBCSSSBCEEECSSCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhc-CCCCCCeEEEEEccCCCCC
Confidence 568999999999999999999987 357899999999999999999985 3467999999999887653
No 362
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.31 E-value=1.3e-12 Score=102.48 Aligned_cols=71 Identities=15% Similarity=0.412 Sum_probs=62.1
Q ss_pred EcCCCCcccHHHHHHHh------------hcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeec
Q psy1757 21 VGGLHRNTGEKEINDYF------------SQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKI 87 (348)
Q Consensus 21 VgnLp~~~te~~L~~~F------------~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i 87 (348)
+.+|+.++++++|++.| ++||.|++|+|++++ +++++|||||+|.+.++|++|++ +++..+.||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56788888888887777 999999999999886 57899999999999999999998 57789999999
Q ss_pred Ccccc
Q psy1757 88 DPKRV 92 (348)
Q Consensus 88 ~v~~a 92 (348)
.+.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 88765
No 363
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.31 E-value=6.1e-12 Score=109.35 Aligned_cols=76 Identities=16% Similarity=0.259 Sum_probs=68.4
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcCC-CeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccC-CeecCcc
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQYG-EVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIG-NKKIDPK 90 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~G-~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~-gr~i~v~ 90 (348)
..+++|||+|||.++|+++|+++|++|| .|.+|+|+.+. +|+|||+|.+.++|++|++ +++..+. |+.|.+.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 3489999999999999999999999999 99999997642 6899999999999999999 5778888 9999999
Q ss_pred cccc
Q psy1757 91 RVTK 94 (348)
Q Consensus 91 ~a~~ 94 (348)
++.+
T Consensus 193 ~a~~ 196 (198)
T 1qm9_A 193 FSKS 196 (198)
T ss_dssp EECC
T ss_pred eecc
Confidence 8764
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.28 E-value=6.3e-12 Score=98.77 Aligned_cols=81 Identities=19% Similarity=0.193 Sum_probs=68.5
Q ss_pred CCCCEEEEcCC--CCcc--------cHHHHHHHhhcCCCeeEEEEeeCCCC--CCcceEEEEEecCHHHHHHHHH-hCCc
Q psy1757 14 NDERKLFVGGL--HRNT--------GEKEINDYFSQYGEVESISIKNDPYT--GQSRGFAFVTYTTQKAVDDLLA-AGDH 80 (348)
Q Consensus 14 ~~~~~lfVgnL--p~~~--------te~~L~~~F~~~G~v~~i~i~~d~~t--g~~kG~aFV~F~~~e~A~~Al~-~~~~ 80 (348)
.+++.|.|.|+ +.++ .+++|++.|++||.|++|+|++++.+ ++++|++||+|.+.++|++|++ +++.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46889999998 3333 34799999999999999999988754 4689999999999999999997 5778
Q ss_pred ccCCeecCcccccc
Q psy1757 81 YIGNKKIDPKRVTK 94 (348)
Q Consensus 81 ~~~gr~i~v~~a~~ 94 (348)
.+.||.|.+.....
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999887643
No 365
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.26 E-value=8.4e-12 Score=98.03 Aligned_cols=81 Identities=17% Similarity=0.207 Sum_probs=68.5
Q ss_pred CCceEEEcCC--CCCCC--------HHHHHHHHhhcCCccccccCCCCCC--CccceEEEEEECCHHHHHHHHHcCC-Ce
Q psy1757 99 LKCKIFVGGL--TTEIT--------EQDVRDYFSQYGSITEFQQPFDKSK--NMKKGFCFISFDDQNVADQVLKNPK-QV 165 (348)
Q Consensus 99 ~~~~l~V~nL--p~~~t--------e~~L~~~F~~~G~i~~v~i~~~~~~--g~~rG~aFV~F~~~e~A~~Al~~~~-~~ 165 (348)
.++.|.|.|+ +..+. +++|+++|++||.|++|.|+++..+ ++++|++||+|.+.++|++|++.|+ ..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4567888887 33332 3799999999999999999988765 3679999999999999999999985 89
Q ss_pred eCCeEEEEEEcccC
Q psy1757 166 ICGKEVDVKRVKFN 179 (348)
Q Consensus 166 i~G~~i~v~~a~~~ 179 (348)
++|+.|.|.+....
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999987654
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.26 E-value=1.2e-11 Score=99.24 Aligned_cols=79 Identities=11% Similarity=0.257 Sum_probs=67.9
Q ss_pred CCCEEEEcCCC--Cc---ccHHHHHHHhhcCCCeeEEEEeeCCC----CCCcceEEEEEecCHHHHHHHHHh-CCcccCC
Q psy1757 15 DERKLFVGGLH--RN---TGEKEINDYFSQYGEVESISIKNDPY----TGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGN 84 (348)
Q Consensus 15 ~~~~lfVgnLp--~~---~te~~L~~~F~~~G~v~~i~i~~d~~----tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~g 84 (348)
.+++|+|.|+- .+ --+++|++.|++||+|.+|+|++++. +++++|++||+|.+.++|++|++. ++.++.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 68999999984 22 24689999999999999999998864 467889999999999999999984 7789999
Q ss_pred eecCccccc
Q psy1757 85 KKIDPKRVT 93 (348)
Q Consensus 85 r~i~v~~a~ 93 (348)
|.|.+..+.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999988764
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.24 E-value=2.1e-12 Score=101.33 Aligned_cols=71 Identities=13% Similarity=0.355 Sum_probs=60.5
Q ss_pred EcCCCCCCCHHHHHHHH------------hhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEE
Q psy1757 105 VGGLTTEITEQDVRDYF------------SQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEV 171 (348)
Q Consensus 105 V~nLp~~~te~~L~~~F------------~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i 171 (348)
+.+|++.+++++|++.| ++||.|++|.|+++.. ++++|||||+|.+.++|++|++.++ ..++|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666777777666655 9999999999998764 6899999999999999999999875 88999999
Q ss_pred EEEEc
Q psy1757 172 DVKRV 176 (348)
Q Consensus 172 ~v~~a 176 (348)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 368
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.19 E-value=3.5e-11 Score=113.56 Aligned_cols=62 Identities=13% Similarity=0.268 Sum_probs=55.1
Q ss_pred CCCCCCCCEEEEcC--CCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy1757 10 GPGRNDERKLFVGG--LHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77 (348)
Q Consensus 10 ~~~~~~~~~lfVgn--Lp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~ 77 (348)
.-.++.+++|||+| |+.++||++|+++|++||+|++|.|.. +||||||+|++.++|++||+.
T Consensus 12 ~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~ 75 (345)
T 3tht_A 12 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVT 75 (345)
T ss_dssp CCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHH
T ss_pred eecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHH
Confidence 34467889999999 578999999999999999999987753 469999999999999999997
No 369
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.18 E-value=2.1e-11 Score=97.80 Aligned_cols=81 Identities=11% Similarity=0.178 Sum_probs=69.1
Q ss_pred CCceEEEcCCCC--CC---CHHHHHHHHhhcCCccccccCCCCC----CCccceEEEEEECCHHHHHHHHHcCC-CeeCC
Q psy1757 99 LKCKIFVGGLTT--EI---TEQDVRDYFSQYGSITEFQQPFDKS----KNMKKGFCFISFDDQNVADQVLKNPK-QVICG 168 (348)
Q Consensus 99 ~~~~l~V~nLp~--~~---te~~L~~~F~~~G~i~~v~i~~~~~----~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G 168 (348)
.+++|+|.|+-. ++ .+++|++.|++||.|++|.|++++. +++++|++||+|.+.++|.+|++.++ ..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 567899999842 22 3689999999999999999998864 46788999999999999999999985 89999
Q ss_pred eEEEEEEcccC
Q psy1757 169 KEVDVKRVKFN 179 (348)
Q Consensus 169 ~~i~v~~a~~~ 179 (348)
+.|.|.+....
T Consensus 99 R~i~v~~~~~~ 109 (118)
T 3ue2_A 99 RKVVAEVYDQE 109 (118)
T ss_dssp EECEEEEECHH
T ss_pred cEEEEEEcChH
Confidence 99999987653
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.11 E-value=1.2e-10 Score=109.74 Aligned_cols=75 Identities=11% Similarity=0.236 Sum_probs=62.1
Q ss_pred cCCCceEEEcC--CCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-Cee---CCe-
Q psy1757 97 NPLKCKIFVGG--LTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVI---CGK- 169 (348)
Q Consensus 97 ~~~~~~l~V~n--Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i---~G~- 169 (348)
...+++|||+| |+..+||++|+++|++||+|++|.++. +||||||+|.+.++|++|++.++ .++ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 34568899999 578999999999999999999998864 47899999999999999999986 555 244
Q ss_pred -EEEEEEcc
Q psy1757 170 -EVDVKRVK 177 (348)
Q Consensus 170 -~i~v~~a~ 177 (348)
.+.+.+++
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 46666653
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.00 E-value=1e-09 Score=87.27 Aligned_cols=77 Identities=12% Similarity=0.163 Sum_probs=63.4
Q ss_pred CCCCCEEEEcCCCCc----------ccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcc
Q psy1757 13 RNDERKLFVGGLHRN----------TGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHY 81 (348)
Q Consensus 13 ~~~~~~lfVgnLp~~----------~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~ 81 (348)
...++.|.|.|+=.. --+++|++.|++||.|++|.|.++. .+|++||+|.+.++|++|++ +++.+
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 346788999988321 1246899999999999999997653 58999999999999999998 57789
Q ss_pred cCCeecCccccc
Q psy1757 82 IGNKKIDPKRVT 93 (348)
Q Consensus 82 ~~gr~i~v~~a~ 93 (348)
+.||.|.+.++.
T Consensus 80 f~GR~i~v~~~~ 91 (114)
T 3s6e_A 80 FAGKMITAAYVP 91 (114)
T ss_dssp ETTEECEEEEEC
T ss_pred ECCEEEEEEEEc
Confidence 999999888763
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.95 E-value=6e-10 Score=88.65 Aligned_cols=76 Identities=11% Similarity=0.130 Sum_probs=62.0
Q ss_pred CceEEEcCCCCCC----------CHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCC
Q psy1757 100 KCKIFVGGLTTEI----------TEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICG 168 (348)
Q Consensus 100 ~~~l~V~nLp~~~----------te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G 168 (348)
++.|.+.|+=... -+++|+++|++||.|++|.|.++. ++|++||+|.+.++|++|++.|+ ..++|
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4557777753211 246899999999999999997663 48999999999999999999885 89999
Q ss_pred eEEEEEEcccC
Q psy1757 169 KEVDVKRVKFN 179 (348)
Q Consensus 169 ~~i~v~~a~~~ 179 (348)
+.|.|.++...
T Consensus 83 R~i~v~~~~~~ 93 (114)
T 3s6e_A 83 KMITAAYVPLP 93 (114)
T ss_dssp EECEEEEECHH
T ss_pred EEEEEEEEcHH
Confidence 99999998643
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=1.2e-09 Score=87.42 Aligned_cols=75 Identities=19% Similarity=0.192 Sum_probs=66.2
Q ss_pred cCCCceEEEcCCCCC-CCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECC-HHHHHHHHHcC---CCeeCCeEE
Q psy1757 97 NPLKCKIFVGGLTTE-ITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDD-QNVADQVLKNP---KQVICGKEV 171 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~-~e~A~~Al~~~---~~~i~G~~i 171 (348)
-+..+.|+|+||++. +++++|+++|++||.|..|.+..+.. .|||+|.+ .++|++|++.+ +..|++..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 345688999999999 99999999999999999999998865 59999999 89999999987 378999888
Q ss_pred EEEEcc
Q psy1757 172 DVKRVK 177 (348)
Q Consensus 172 ~v~~a~ 177 (348)
+++...
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 887654
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=2.7e-09 Score=85.30 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=61.2
Q ss_pred CCCCCCCEEEEcCCCCc-ccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecC-HHHHHHHHHhC---CcccCCe
Q psy1757 11 PGRNDERKLFVGGLHRN-TGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTT-QKAVDDLLAAG---DHYIGNK 85 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~-~e~A~~Al~~~---~~~~~gr 85 (348)
-.-...+.|+|+||+.+ +++++|+++|++||+|..|.+.++.. .|||+|.+ .++|++|++.. +..|.+.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 34567789999999999 99999999999999999999998874 59999999 88899888863 3456665
Q ss_pred ecCcc
Q psy1757 86 KIDPK 90 (348)
Q Consensus 86 ~i~v~ 90 (348)
.+.++
T Consensus 87 ~~~~e 91 (121)
T 1owx_A 87 EVTWE 91 (121)
T ss_dssp SEEEE
T ss_pred EEEEE
Confidence 44443
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.78 E-value=9.3e-09 Score=77.42 Aligned_cols=72 Identities=19% Similarity=0.236 Sum_probs=60.3
Q ss_pred CCCEEEEcCCC----CcccH----HHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCee
Q psy1757 15 DERKLFVGGLH----RNTGE----KEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKK 86 (348)
Q Consensus 15 ~~~~lfVgnLp----~~~te----~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~ 86 (348)
...||+|.-++ .+.-+ .+|.+.|++||+|..++|..++ +||+|.+.++|.+||++++..+.||.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCeE
Confidence 34577777665 22323 6799999999999999999875 89999999999999999999999999
Q ss_pred cCcccccc
Q psy1757 87 IDPKRVTK 94 (348)
Q Consensus 87 i~v~~a~~ 94 (348)
|+|+.+++
T Consensus 78 LkV~lkt~ 85 (91)
T 2dnr_A 78 ITIALKSP 85 (91)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99988764
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.78 E-value=2.1e-08 Score=75.48 Aligned_cols=77 Identities=12% Similarity=0.185 Sum_probs=62.6
Q ss_pred cCCCceEEEcCCCC----CCCH----HHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCC
Q psy1757 97 NPLKCKIFVGGLTT----EITE----QDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICG 168 (348)
Q Consensus 97 ~~~~~~l~V~nLp~----~~te----~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G 168 (348)
.+...+|+|.-++. +... .+|.+.|++||.|..++|+.++ +||+|.+.++|.+|++..+..++|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~G 75 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLN 75 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETT
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCC
Confidence 34567777776652 2323 6788999999999999999874 899999999999999944699999
Q ss_pred eEEEEEEcccCCC
Q psy1757 169 KEVDVKRVKFNPE 181 (348)
Q Consensus 169 ~~i~v~~a~~~~~ 181 (348)
|.|+|+.+++.-.
T Consensus 76 r~LkV~lkt~dW~ 88 (91)
T 2dnr_A 76 RTITIALKSPSGP 88 (91)
T ss_dssp EEEEEEECCCSSC
T ss_pred eEEEEEeCCCCcc
Confidence 9999999887643
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=3.4e-08 Score=74.76 Aligned_cols=71 Identities=11% Similarity=0.178 Sum_probs=60.1
Q ss_pred CCCEEEEcCCCCc-----ccH----HHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCe
Q psy1757 15 DERKLFVGGLHRN-----TGE----KEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNK 85 (348)
Q Consensus 15 ~~~~lfVgnLp~~-----~te----~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr 85 (348)
...||+|.-++.+ +-+ .+|.+.|++||+|..++|..|+ +||+|.+.++|.+||++++.++.||
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~Gr 85 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKGR 85 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETTE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCCe
Confidence 4578889877633 222 5689999999999999999885 9999999999999999889999999
Q ss_pred ecCccccc
Q psy1757 86 KIDPKRVT 93 (348)
Q Consensus 86 ~i~v~~a~ 93 (348)
.|+|+...
T Consensus 86 ~L~V~~k~ 93 (95)
T 1ufw_A 86 AVKISGPS 93 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEeccC
Confidence 99988754
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.54 E-value=6.5e-08 Score=73.17 Aligned_cols=73 Identities=19% Similarity=0.325 Sum_probs=60.7
Q ss_pred cCCCceEEEcCCCCC------CCH---HHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeC
Q psy1757 97 NPLKCKIFVGGLTTE------ITE---QDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVIC 167 (348)
Q Consensus 97 ~~~~~~l~V~nLp~~------~te---~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~ 167 (348)
.+...+|+|.-++.. ..+ .+|.+.|+.||+|..++|+.++ +||+|.+.++|.+||+..+..++
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~ 83 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVK 83 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEET
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeC
Confidence 467788999887632 231 5688999999999999999874 89999999999999994469999
Q ss_pred CeEEEEEEcc
Q psy1757 168 GKEVDVKRVK 177 (348)
Q Consensus 168 G~~i~v~~a~ 177 (348)
||.|+|++..
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 9999998754
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.52 E-value=1.9e-07 Score=82.52 Aligned_cols=66 Identities=12% Similarity=0.229 Sum_probs=57.1
Q ss_pred ccHHHHHHHhhcCCCeeEEEEeeCC----CCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeecCccccc
Q psy1757 28 TGEKEINDYFSQYGEVESISIKNDP----YTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKIDPKRVT 93 (348)
Q Consensus 28 ~te~~L~~~F~~~G~v~~i~i~~d~----~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i~v~~a~ 93 (348)
-.+++|++.|++||.|.++.|.++. .+++++|++||+|.+.++|++|++ +++.++.||.|.+....
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3568999999999999999998554 355899999999999999999998 56789999999887764
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.47 E-value=1.2e-07 Score=83.91 Aligned_cols=68 Identities=10% Similarity=0.142 Sum_probs=59.5
Q ss_pred CCHHHHHHHHhhcCCccccccCCC----CCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEEEEEcccC
Q psy1757 112 ITEQDVRDYFSQYGSITEFQQPFD----KSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVDVKRVKFN 179 (348)
Q Consensus 112 ~te~~L~~~F~~~G~i~~v~i~~~----~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~v~~a~~~ 179 (348)
-.+++|++.|++||.|+++.|+++ +.+++++|++||+|.+.++|++|++.++ ..++||.|.+.+....
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence 356899999999999999999844 4456899999999999999999999985 8899999999987643
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=1.7e-06 Score=66.28 Aligned_cols=91 Identities=18% Similarity=0.264 Sum_probs=76.0
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcC-----CCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCCee
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQY-----GEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKK 86 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~-----G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~gr~ 86 (348)
.....++|.|.|||.+++++.|.-+|+.- |+|.+++... +-|+|+|.+.+.|++.|+...+.|++..
T Consensus 4 ~~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~ 75 (104)
T 2dhx_A 4 GSSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQ 75 (104)
T ss_dssp SCCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSB
T ss_pred CccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeE
Confidence 34567899999999999999999999862 7899988765 2689999999999999999899999988
Q ss_pred cCcccccccccCCCceEEEcCCCCCCC
Q psy1757 87 IDPKRVTKRVNPLKCKIFVGGLTTEIT 113 (348)
Q Consensus 87 i~v~~a~~~~~~~~~~l~V~nLp~~~t 113 (348)
|.|..... ....+|.+.+|++.++
T Consensus 76 LsV~P~~~---~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 76 LSLRPAPP---RAPARLLLQGLPPGTS 99 (104)
T ss_dssp CEEEECCC---CCCCCCCCCSCCCCCC
T ss_pred EEEEcCCC---CCcceEeeecCCCCCC
Confidence 88866433 3457799999998775
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.14 E-value=7.9e-06 Score=63.11 Aligned_cols=75 Identities=13% Similarity=0.152 Sum_probs=64.5
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcC-----CCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHH-HhCCcccCC
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQY-----GEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLL-AAGDHYIGN 84 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~-----G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al-~~~~~~~~g 84 (348)
...+..++|=+-|||..++++.|+.+.+++ |.|+.|.+..|- +=|+|+|+|..+|-||. ..++.+|.|
T Consensus 16 ~~~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~g 89 (117)
T 2l9w_A 16 NSKELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQG 89 (117)
T ss_dssp CTTTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETT
T ss_pred CCccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecC
Confidence 345678999999999999999999999999 999999998885 47999999999887765 678888988
Q ss_pred eecCccc
Q psy1757 85 KKIDPKR 91 (348)
Q Consensus 85 r~i~v~~ 91 (348)
++|++..
T Consensus 90 r~Lr~gT 96 (117)
T 2l9w_A 90 KVIRSGT 96 (117)
T ss_dssp EEEEEEC
T ss_pred eEEEecC
Confidence 8876653
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.09 E-value=1e-05 Score=62.45 Aligned_cols=72 Identities=17% Similarity=0.174 Sum_probs=63.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhc-----CCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-CCeeCCeEEE
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQY-----GSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGKEVD 172 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~~-----G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~~~i~G~~i~ 172 (348)
..++|-+-+||..+++..|+.+++++ |.|+.|.+..|.. -|+|+|.|...|.+|...+ +.+|.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 46789999999999999999999999 9999998887743 6999999999998888666 5899999999
Q ss_pred EEEc
Q psy1757 173 VKRV 176 (348)
Q Consensus 173 v~~a 176 (348)
|.-.
T Consensus 94 ~gTv 97 (117)
T 2l9w_A 94 SGTI 97 (117)
T ss_dssp EECH
T ss_pred ecCH
Confidence 9644
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.83 E-value=5.5e-05 Score=57.87 Aligned_cols=75 Identities=16% Similarity=0.248 Sum_probs=63.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhh-----cCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCCeEEEE
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQ-----YGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDV 173 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~-----~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G~~i~v 173 (348)
..++|.|.|||+.++++.|+-+|++ -|.|+.++... +-|+|+|.+.+.|++.|++..+.|++.+|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 3578999999999999999999987 24788887643 3789999999999999999899999999999
Q ss_pred EEcccCCC
Q psy1757 174 KRVKFNPE 181 (348)
Q Consensus 174 ~~a~~~~~ 181 (348)
....+...
T Consensus 79 ~P~~~~~~ 86 (104)
T 2dhx_A 79 RPAPPRAP 86 (104)
T ss_dssp EECCCCCC
T ss_pred EcCCCCCc
Confidence 77555543
No 385
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.57 E-value=0.00043 Score=52.33 Aligned_cols=59 Identities=20% Similarity=0.332 Sum_probs=48.3
Q ss_pred CCCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy1757 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77 (348)
Q Consensus 10 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~ 77 (348)
+......+.++| ++|+++...||.++|+.||-| .|+.+.|. .|||.|.+++.|..|++.
T Consensus 10 d~~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 10 DLQPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp CCCCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHH
T ss_pred CCCCCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 334445566667 999999999999999999965 46667774 899999999999999885
No 386
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.21 E-value=0.001 Score=52.37 Aligned_cols=74 Identities=19% Similarity=0.271 Sum_probs=57.2
Q ss_pred CCCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCC-eecCc
Q psy1757 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGN-KKIDP 89 (348)
Q Consensus 11 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~g-r~i~v 89 (348)
.+..+.+-|.|-+.|.+. ...|.+.|++||+|.+..... ...+-.|+|.++.+|++||..++..+.+ -.|-|
T Consensus 19 ~~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV 91 (119)
T 1wwh_A 19 EDHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGV 91 (119)
T ss_dssp --CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEE
T ss_pred CCCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEE
Confidence 445567889999999885 667788899999999887622 2258999999999999999999888875 44444
Q ss_pred cc
Q psy1757 90 KR 91 (348)
Q Consensus 90 ~~ 91 (348)
++
T Consensus 92 ~p 93 (119)
T 1wwh_A 92 KP 93 (119)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.87 E-value=0.002 Score=49.35 Aligned_cols=75 Identities=17% Similarity=0.122 Sum_probs=60.1
Q ss_pred CCceEEEcCCCCCC-CH----HHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCC-CeeCCeEEE
Q psy1757 99 LKCKIFVGGLTTEI-TE----QDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK-QVICGKEVD 172 (348)
Q Consensus 99 ~~~~l~V~nLp~~~-te----~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~-~~i~G~~i~ 172 (348)
-.++|+|.||+.++ +. +.++++|..|+++.....++.- | -..|.|.+.++|.+|...++ ..++|++++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF-----R-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF-----K-RVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT-----T-EEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc-----e-EEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 35689999998875 22 5778999999988776665531 1 46899999999999999985 789999999
Q ss_pred EEEcccC
Q psy1757 173 VKRVKFN 179 (348)
Q Consensus 173 v~~a~~~ 179 (348)
|-++.+.
T Consensus 78 ~YFgq~~ 84 (104)
T 1wey_A 78 LYFAQTL 84 (104)
T ss_dssp EECCCCS
T ss_pred EEecCCC
Confidence 9998854
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.81 E-value=0.0015 Score=49.46 Aligned_cols=52 Identities=23% Similarity=0.379 Sum_probs=44.0
Q ss_pred CEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy1757 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77 (348)
Q Consensus 17 ~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~ 77 (348)
..++| ++|+++...||.++|+.||-| .|+.+.|. .|||.|.+++.|..|++.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 34555 999999999999999999944 57677764 899999999999999985
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.67 E-value=0.0056 Score=45.96 Aligned_cols=61 Identities=8% Similarity=0.113 Sum_probs=49.1
Q ss_pred CEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCC--cceEEEEEecCHHHHHHHHHh
Q psy1757 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQ--SRGFAFVTYTTQKAVDDLLAA 77 (348)
Q Consensus 17 ~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~--~kG~aFV~F~~~e~A~~Al~~ 77 (348)
.+|.|++||+++||+++.+.+....++.....+..+.+.. .-.-|+|.|.+.+++....+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~ 64 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDR 64 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 5899999999999999999999988877666665543322 224599999999999888876
No 390
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.56 E-value=0.0082 Score=45.98 Aligned_cols=74 Identities=7% Similarity=0.041 Sum_probs=58.3
Q ss_pred CCCCEEEEcCCCCcc-c----HHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHH-hCCcccCCeec
Q psy1757 14 NDERKLFVGGLHRNT-G----EKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA-AGDHYIGNKKI 87 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~-t----e~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~-~~~~~~~gr~i 87 (348)
+-.++|+|.||+.++ + ++.++++|..|+++......+.- .-..|.|.+.++|.+|-. +++..+.|++|
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCcee
Confidence 346789999999876 2 36789999999999988887642 246899999999998866 45668999888
Q ss_pred Cccccc
Q psy1757 88 DPKRVT 93 (348)
Q Consensus 88 ~v~~a~ 93 (348)
++-.+.
T Consensus 77 r~YFgq 82 (104)
T 1wey_A 77 KLYFAQ 82 (104)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 776654
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.42 E-value=0.011 Score=46.40 Aligned_cols=72 Identities=17% Similarity=0.175 Sum_probs=57.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcCCCeeCC-eEEEEEEcc
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICG-KEVDVKRVK 177 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~~~~i~G-~~i~v~~a~ 177 (348)
..+-|.|-+.+... ...|.+.|++||.|.+...... ...-.|.|+++.+|++||.+.+..|++ ..|-|....
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence 35678888999885 5677788999999998876221 348899999999999999998888874 667777654
No 392
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.25 E-value=0.0027 Score=61.78 Aligned_cols=58 Identities=17% Similarity=0.365 Sum_probs=44.4
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhC
Q psy1757 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG 78 (348)
Q Consensus 15 ~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~ 78 (348)
..|+|||. .|..+++++|.++|++||+|.++.+-+++ | -|+.|+|.+.++++++++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSSC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhcc
Confidence 35899997 79999999999999999999999887653 2 59999999999999887753
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.21 E-value=0.0097 Score=44.92 Aligned_cols=55 Identities=18% Similarity=0.298 Sum_probs=43.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP 162 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~ 162 (348)
+...++| ++|.++...||.++|+.||.| .|+-+.|. .|||.|.+++.|..|+..+
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 3455666 999999999999999999943 33333332 7999999999999998854
No 394
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.46 E-value=0.017 Score=43.26 Aligned_cols=63 Identities=11% Similarity=0.126 Sum_probs=48.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCC--ccceEEEEEECCHHHHHHHHHcCC
Q psy1757 101 CKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKN--MKKGFCFISFDDQNVADQVLKNPK 163 (348)
Q Consensus 101 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g--~~rG~aFV~F~~~e~A~~Al~~~~ 163 (348)
++|.|++||+.+||+++.+.++....+.....+..+.+. ..-.-|+|.|.+.+++....+..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~ 66 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFD 66 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 579999999999999999999988776655554333221 123568999999999999888863
No 395
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.19 E-value=0.021 Score=45.56 Aligned_cols=78 Identities=14% Similarity=0.230 Sum_probs=52.6
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcCCCeeE-EEEee------------CCCCC-CcceEEEEEecCHHHHHHHHHhCC
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVES-ISIKN------------DPYTG-QSRGFAFVTYTTQKAVDDLLAAGD 79 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~-i~i~~------------d~~tg-~~kG~aFV~F~~~e~A~~Al~~~~ 79 (348)
+....|.|=+.|++.+ ..|.+.|++||.|.+ +.+.+ .+... ....+..|+|.++.+|++||..++
T Consensus 5 ~~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG 83 (132)
T 3p3d_A 5 NGELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENG 83 (132)
T ss_dssp ---CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTT
T ss_pred cCceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCC
Confidence 3456677778876654 566778999999876 22211 00000 134678999999999999999999
Q ss_pred cccCCeecCcccc
Q psy1757 80 HYIGNKKIDPKRV 92 (348)
Q Consensus 80 ~~~~gr~i~v~~a 92 (348)
..|.|..|-|.+.
T Consensus 84 ~ii~G~mIGV~Py 96 (132)
T 3p3d_A 84 AVFNGVLLGVIPY 96 (132)
T ss_dssp CEETTEECEEEEC
T ss_pred eEeCcEEEEEEEC
Confidence 9999976555543
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.17 E-value=0.083 Score=42.10 Aligned_cols=78 Identities=22% Similarity=0.323 Sum_probs=55.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccc-cccCCCCC--------CC-----ccceEEEEEECCHHHHHHHHHcCCCe
Q psy1757 100 KCKIFVGGLTTEITEQDVRDYFSQYGSITE-FQQPFDKS--------KN-----MKKGFCFISFDDQNVADQVLKNPKQV 165 (348)
Q Consensus 100 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~--------~g-----~~rG~aFV~F~~~e~A~~Al~~~~~~ 165 (348)
+..|.|-+.|++.+. .+-+.|++||.|.+ +.+.+... .. .....-.|+|++..+|.+||.+.+..
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 345777788776655 55678999999876 44332110 00 12457799999999999999999999
Q ss_pred eCCeEEEEEEccc
Q psy1757 166 ICGKEVDVKRVKF 178 (348)
Q Consensus 166 i~G~~i~v~~a~~ 178 (348)
|+|.-|-|....+
T Consensus 86 i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGVLLGVIPYTK 98 (132)
T ss_dssp ETTEECEEEECCH
T ss_pred eCcEEEEEEECCH
Confidence 9999888877653
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.80 E-value=0.031 Score=42.20 Aligned_cols=63 Identities=3% Similarity=0.040 Sum_probs=43.9
Q ss_pred CCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCC--cceEEEEEecCHHHHHHHHHh
Q psy1757 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQ--SRGFAFVTYTTQKAVDDLLAA 77 (348)
Q Consensus 15 ~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~--~kG~aFV~F~~~e~A~~Al~~ 77 (348)
.+-+|.|+.||+.+||+++.+.+...=++.....+..+.+.. .-.-|+|.|.+.|++....+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~ 72 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDR 72 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHH
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 456899999999999999988887664443222222221211 113489999999999988886
No 398
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.61 E-value=0.012 Score=44.45 Aligned_cols=53 Identities=19% Similarity=0.317 Sum_probs=41.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC
Q psy1757 101 CKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP 162 (348)
Q Consensus 101 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~ 162 (348)
..++| ++|.++...||.++|+.||.| .|+-+.|. .|||.|.+++.|..|+..+
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 45666 999999999999999999843 33333332 7999999999999988853
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.27 E-value=0.057 Score=40.79 Aligned_cols=64 Identities=8% Similarity=0.050 Sum_probs=45.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCc--cceEEEEEECCHHHHHHHHHcCC
Q psy1757 100 KCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNM--KKGFCFISFDDQNVADQVLKNPK 163 (348)
Q Consensus 100 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~--~rG~aFV~F~~~e~A~~Al~~~~ 163 (348)
+-+|.|+.||+.+||+++.+.++..-.+.....+..+.+.. .-.-|+|.|.+.++.....+..+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~ 74 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFD 74 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHST
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcC
Confidence 45799999999999999888877654444444333322211 12358999999999999998864
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.13 E-value=0.023 Score=55.30 Aligned_cols=58 Identities=14% Similarity=0.238 Sum_probs=43.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC
Q psy1757 99 LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP 162 (348)
Q Consensus 99 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~ 162 (348)
..++|+|. .+..+++.+|.+.|++||.|.++....++ .-|+.|||.+.+++.++++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhcc
Confidence 45789997 78999999999999999999998876543 259999999999999887664
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.07 E-value=0.67 Score=45.62 Aligned_cols=55 Identities=22% Similarity=0.381 Sum_probs=44.9
Q ss_pred CCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy1757 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77 (348)
Q Consensus 14 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~ 77 (348)
.....++|+ +|..+...+|.++|+.||.| +|+.+.+. .|||.|.+.+.|..+++.
T Consensus 438 ~R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 438 KRDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp CGGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHH
T ss_pred CcCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHH
Confidence 345667776 99999999999999999965 56555553 799999999999999886
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=72.37 E-value=6.3 Score=38.57 Aligned_cols=54 Identities=19% Similarity=0.309 Sum_probs=42.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC
Q psy1757 100 KCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP 162 (348)
Q Consensus 100 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~ 162 (348)
+..++|+ ++..+...+|.+.|+.||.+ +|+.+.+ ..|||.|.+.+.|..++...
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHH
Confidence 4566676 88888999999999999954 3433332 27999999999999888775
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=49.35 E-value=50 Score=24.13 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=51.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCccccccCCCCCCCccceEEEEEECCHHHHHHHHHcC-C-------CeeCCe
Q psy1757 98 PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-K-------QVICGK 169 (348)
Q Consensus 98 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV~F~~~e~A~~Al~~~-~-------~~i~G~ 169 (348)
..+|.|-|-|+|..+-..++.-.....|---.|..+. |-|.|.|.+.++-.-|+.++ + .++.|.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkllnhnnnklqieirgq 81 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQ 81 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcce
Confidence 3568889999999998888877777777655555432 36899999999988888764 2 356777
Q ss_pred EEEEEE
Q psy1757 170 EVDVKR 175 (348)
Q Consensus 170 ~i~v~~ 175 (348)
-+.|-.
T Consensus 82 icdvis 87 (129)
T 4eyt_A 82 ICDVIS 87 (129)
T ss_dssp EEEEEC
T ss_pred eeeeee
Confidence 777643
No 404
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=39.45 E-value=1.1e+02 Score=22.18 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=23.2
Q ss_pred eeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy1757 43 VESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77 (348)
Q Consensus 43 v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~ 77 (348)
|.+|.+.. ...||.||++...++...+|+.
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~ 69 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKG 69 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTT
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHC
Confidence 56665543 3789999999999888888875
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=34.42 E-value=98 Score=21.07 Aligned_cols=66 Identities=14% Similarity=0.291 Sum_probs=36.1
Q ss_pred EEEEcC-CCCcccHHHHHHHhhcCC-----CeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh-CCcccCCeecCcc
Q psy1757 18 KLFVGG-LHRNTGEKEINDYFSQYG-----EVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA-GDHYIGNKKIDPK 90 (348)
Q Consensus 18 ~lfVgn-Lp~~~te~~L~~~F~~~G-----~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~-~~~~~~gr~i~v~ 90 (348)
+|||.. --..++..+|..++..-+ .|-.|+|..+ |.||+-.... +.++++. ....+.|+.+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEEE
Confidence 566642 224467778888886543 3566777543 7888876654 4445543 4456788888776
Q ss_pred cc
Q psy1757 91 RV 92 (348)
Q Consensus 91 ~a 92 (348)
.+
T Consensus 73 ~~ 74 (76)
T 2g0c_A 73 KA 74 (76)
T ss_dssp EC
T ss_pred EC
Confidence 54
No 406
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=29.53 E-value=1.2e+02 Score=19.90 Aligned_cols=57 Identities=7% Similarity=0.012 Sum_probs=43.7
Q ss_pred CCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCC
Q psy1757 16 ERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGD 79 (348)
Q Consensus 16 ~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~ 79 (348)
..++.|.++....-...|.+.+.. --|..+.+-... +-+.|+|.+.++..++|+..+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~------~~~~v~~~~~~~i~~~i~~~G 62 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE------AVVAGNKEDVDKYIKAVEAAG 62 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE------EEEEEEGGGHHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC------CEEEEEECCHHHHHHHHHHcC
Confidence 457889999988888999999998 778888775432 467788886677777887644
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=28.50 E-value=51 Score=27.17 Aligned_cols=47 Identities=11% Similarity=0.143 Sum_probs=32.6
Q ss_pred EEEcCCCCc---------ccHHHHHHHh--hcCCCeeEEEEeeCCCCCCcceEEEEEecCH
Q psy1757 19 LFVGGLHRN---------TGEKEINDYF--SQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68 (348)
Q Consensus 19 lfVgnLp~~---------~te~~L~~~F--~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~ 68 (348)
+.|-|+|.. .+..+|++.| +.|.++. |+.+.++ .-+.|++.|+|.+.
T Consensus 15 gIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 15 GIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKD 72 (172)
T ss_dssp EEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSS
T ss_pred EEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCC
Confidence 445666651 3457899977 9998876 5555543 34779999999764
No 408
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=31.03 E-value=15 Score=27.81 Aligned_cols=54 Identities=2% Similarity=0.088 Sum_probs=33.4
Q ss_pred CCHHHHHHHHhhcCCccccccCCCCCCCccceEEEE--EECCHHHHHHHHHcCCCeeC
Q psy1757 112 ITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFI--SFDDQNVADQVLKNPKQVIC 167 (348)
Q Consensus 112 ~te~~L~~~F~~~G~i~~v~i~~~~~~g~~rG~aFV--~F~~~e~A~~Al~~~~~~i~ 167 (348)
.++++|..+..+.+ +..+.+.+...+|+.. |..+ .|.+.++|.+|++.|...+.
T Consensus 34 ~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~W-yvVlyG~Y~s~~~A~~A~~~LP~~l~ 89 (106)
T 2lfv_A 34 SNYDNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKKAVSTLPADVQ 89 (106)
Confidence 34566677666665 4445555443333322 3322 78999999999999865554
No 409
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=24.57 E-value=2e+02 Score=20.85 Aligned_cols=58 Identities=9% Similarity=0.026 Sum_probs=46.7
Q ss_pred CCCCCCEEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHh
Q psy1757 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77 (348)
Q Consensus 12 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~ 77 (348)
+....+-|-|-|||..+-+.++.-.....|---.|..+. |-|.|.|.+.++..-||..
T Consensus 8 sikqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqk 65 (129)
T 4eyt_A 8 SIKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQK 65 (129)
T ss_dssp --CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHH
T ss_pred hhhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHH
Confidence 345678889999999999999888888888766777654 4689999999998888874
No 410
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=23.23 E-value=17 Score=33.70 Aligned_cols=13 Identities=8% Similarity=0.102 Sum_probs=7.7
Q ss_pred CCCHHHHHHHHhh
Q psy1757 111 EITEQDVRDYFSQ 123 (348)
Q Consensus 111 ~~te~~L~~~F~~ 123 (348)
.+++++|++....
T Consensus 228 ~vt~~~l~~i~~~ 240 (358)
T 2pk2_A 228 TVTLELLDELTHE 240 (358)
T ss_dssp SCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 4566666665543
No 411
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=20.90 E-value=91 Score=28.91 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=40.3
Q ss_pred EEEEcCCCCc---ccHHHHHHHhhcCCCeeEEEEeeCCCCCCcceEEEEEecCHHHHHHHHHhCCcccCC
Q psy1757 18 KLFVGGLHRN---TGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGN 84 (348)
Q Consensus 18 ~lfVgnLp~~---~te~~L~~~F~~~G~v~~i~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~~~~~~~g 84 (348)
--+|||+..- -..+.+.++.++||+|..+++-. .-+|...+.+.++.++......+..
T Consensus 18 ~PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvv~~~~~v~~il~~~~~~f~~ 78 (476)
T 3e6i_A 18 LPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVGS---------QRMVVMHGYKAVKEALLDYKDEFSG 78 (476)
T ss_dssp BTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETT---------EEEEEECSHHHHHHHHHTSTTTTCE
T ss_pred cccccChhhhccccHhHHHHHHHHHhCCEEEEEECC---------ccEEEECCHHHHHHHHhcchHhhCC
Confidence 3467887532 23456788889999998777532 3468889999999999865444443
Done!