Your job contains 1 sequence.
>psy1757
MSYRANGTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGF
AFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVTKRVNPLKCKIFVGGLTTEITEQDVRDY
FSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFNP
ETMGSVSGAVRGAGARVSSAGAAYAAAPGRVVAYPSTYAGYAAADYGYTAGSYDAYATAY
PGYDYSAMGYAYPAPAVQTMDTPLVVMMHMLQHTLVMTIVQWVTHTLHQLLHMEEANYGY
TAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKYREAAAYPRHAPY
The BLAST search returned 14 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1757
(348 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0263396 - symbol:sqd "squid" species:7227 "Drosoph... 514 6.1e-56 2
UNIPROTKB|E9PTS0 - symbol:Hnrnpab "Protein Hnrnpab" speci... 343 6.4e-37 2
UNIPROTKB|Q9QX81 - symbol:Hnrnpab "RCG34663, isoform CRA_... 343 6.4e-37 2
UNIPROTKB|D6RBZ0 - symbol:HNRNPAB "Heterogeneous nuclear ... 337 2.7e-36 2
ZFIN|ZDB-GENE-040426-2717 - symbol:hnrpdl "heterogeneous ... 344 1.2e-35 2
ZFIN|ZDB-GENE-030131-185 - symbol:hnrnpab "heterogeneous ... 346 1.5e-35 2
UNIPROTKB|Q99729 - symbol:HNRNPAB "Heterogeneous nuclear ... 327 3.1e-35 2
UNIPROTKB|F1PA19 - symbol:HNRNPAB "Uncharacterized protei... 325 5.0e-35 2
UNIPROTKB|F1NIB2 - symbol:HNRNPAB "Uncharacterized protei... 331 6.3e-35 2
UNIPROTKB|B4DTC3 - symbol:HNRNPD "cDNA FLJ54150, highly s... 335 1.0e-34 2
UNIPROTKB|F1NCV5 - symbol:HNRPDL "Heterogeneous nuclear r... 328 1.0e-34 2
UNIPROTKB|Q5ZI72 - symbol:HNRPDL "Heterogeneous nuclear r... 328 1.7e-34 2
UNIPROTKB|Q7ZYE9 - symbol:hnrnpab "Hnrpab-prov protein" s... 327 2.1e-34 2
ZFIN|ZDB-GENE-040426-2516 - symbol:zgc:77052 "zgc:77052" ... 335 2.7e-34 2
UNIPROTKB|A6H6Y0 - symbol:HNRNPD "Uncharacterized protein... 331 2.7e-34 2
UNIPROTKB|E2RIX2 - symbol:HNRNPD "Uncharacterized protein... 331 2.7e-34 2
UNIPROTKB|Q14103 - symbol:HNRNPD "Heterogeneous nuclear r... 331 2.7e-34 2
MGI|MGI:101947 - symbol:Hnrnpd "heterogeneous nuclear rib... 331 2.7e-34 2
ZFIN|ZDB-GENE-070424-97 - symbol:hnrnpd "heterogeneous nu... 330 2.7e-34 2
UNIPROTKB|F1N2T0 - symbol:HNRPDL "Uncharacterized protein... 332 4.4e-34 2
UNIPROTKB|E2QRT0 - symbol:HNRPDL "Uncharacterized protein... 332 4.4e-34 2
UNIPROTKB|O14979 - symbol:HNRPDL "Heterogeneous nuclear r... 332 4.4e-34 2
MGI|MGI:1355299 - symbol:Hnrpdl "heterogeneous nuclear ri... 332 4.4e-34 2
UNIPROTKB|H0Y8G5 - symbol:HNRNPD "Heterogeneous nuclear r... 331 9.0e-34 2
UNIPROTKB|F1NCW4 - symbol:HNRNPD "Uncharacterized protein... 324 1.1e-33 2
UNIPROTKB|Q96DH6 - symbol:MSI2 "RNA-binding protein Musas... 324 1.9e-33 2
ZFIN|ZDB-GENE-040426-1268 - symbol:msi2b "musashi homolog... 324 2.4e-33 2
MGI|MGI:1923876 - symbol:Msi2 "musashi RNA-binding protei... 323 2.4e-33 2
UNIPROTKB|Q5ZIH1 - symbol:HNRNPD "Uncharacterized protein... 319 3.8e-33 2
UNIPROTKB|G3V6A5 - symbol:Hnrpd "Heterogeneous nuclear ri... 332 4.9e-33 2
FB|FBgn0260943 - symbol:Rbp6 "RNA-binding protein 6" spec... 324 4.9e-33 2
RGD|1309950 - symbol:Hnrpdl "heterogeneous nuclear ribonu... 322 6.2e-33 2
UNIPROTKB|Q3SWU3 - symbol:Hnrpdl "Heterogeneous nuclear r... 322 6.2e-33 2
RGD|620365 - symbol:Hnrpd "heterogeneous nuclear ribonucl... 328 1.3e-32 2
UNIPROTKB|Q9JJ54 - symbol:Hnrnpd "Heterogeneous nuclear r... 328 1.3e-32 2
ZFIN|ZDB-GENE-030826-25 - symbol:msi2a "musashi homolog 2... 315 6.9e-32 2
RGD|69255 - symbol:Hnrnpab "heterogeneous nuclear ribonuc... 343 3.3e-31 1
MGI|MGI:1330294 - symbol:Hnrnpab "heterogeneous nuclear r... 343 3.3e-31 1
UNIPROTKB|Q9QX80 - symbol:Hnrnpab "Hnrpab protein" specie... 343 3.3e-31 1
UNIPROTKB|B4DHE8 - symbol:MSI2 "RNA-binding protein Musas... 302 3.8e-31 2
ZFIN|ZDB-GENE-050320-86 - symbol:msi1 "musashi homolog 1 ... 312 6.1e-31 2
UNIPROTKB|Q3ZC44 - symbol:HNRNPAB "Uncharacterized protei... 340 6.9e-31 1
UNIPROTKB|O43347 - symbol:MSI1 "RNA-binding protein Musas... 316 9.9e-31 2
RGD|628778 - symbol:Msi1 "musashi RNA-binding protein 1" ... 315 1.3e-30 2
UNIPROTKB|Q8K3P4 - symbol:Msi1 "RNA-binding protein Musas... 315 1.3e-30 2
TAIR|locus:504955752 - symbol:AT3G13224 species:3702 "Ara... 290 1.3e-30 2
UNIPROTKB|D6R9P3 - symbol:HNRNPAB "Heterogeneous nuclear ... 337 1.4e-30 1
UNIPROTKB|D6RD18 - symbol:HNRNPAB "Heterogeneous nuclear ... 337 1.4e-30 1
FB|FBgn0004838 - symbol:Hrb27C "Heterogeneous nuclear rib... 292 5.3e-30 2
UNIPROTKB|A5D9H5 - symbol:HNRPD "Heterogeneous nuclear ri... 331 6.2e-30 1
UNIPROTKB|F1NIB4 - symbol:HNRNPAB "Uncharacterized protei... 331 6.2e-30 1
UNIPROTKB|F1MS42 - symbol:MSI1 "Uncharacterized protein" ... 308 6.8e-30 2
UNIPROTKB|E2RK48 - symbol:MSI1 "Uncharacterized protein" ... 308 6.8e-30 2
ASPGD|ASPL0000063757 - symbol:AN10941 species:162425 "Eme... 334 9.5e-30 1
UNIPROTKB|G3V6A4 - symbol:Hnrpd "Protein Hnrpd" species:1... 328 1.3e-29 1
UNIPROTKB|E1BEG2 - symbol:HNRNPA3 "Uncharacterized protei... 293 1.4e-29 2
WB|WBGene00022235 - symbol:sqd-1 species:6239 "Caenorhabd... 327 1.6e-29 1
UNIPROTKB|Q9XSY6 - symbol:Q9XSY6 "HnRNP A/B related prote... 327 1.6e-29 1
UNIPROTKB|E1BZE6 - symbol:LOC100859627 "Uncharacterized p... 288 3.7e-29 2
UNIPROTKB|H0YA96 - symbol:HNRNPD "Heterogeneous nuclear r... 323 4.4e-29 1
UNIPROTKB|Q5RBU8 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 285 4.7e-29 2
UNIPROTKB|Q9TTV2 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 285 4.7e-29 2
UNIPROTKB|F1LNG4 - symbol:Hnrnpa3 "Heterogeneous nuclear ... 291 5.9e-29 2
UNIPROTKB|Q5ZME1 - symbol:HNRNPA2B1 "Uncharacterized prot... 284 5.9e-29 2
UNIPROTKB|Q2HJ60 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 284 5.9e-29 2
UNIPROTKB|F1Q1K6 - symbol:HNRNPA2B1 "Uncharacterized prot... 284 5.9e-29 2
UNIPROTKB|P22626 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 284 5.9e-29 2
MGI|MGI:104819 - symbol:Hnrnpa2b1 "heterogeneous nuclear ... 284 5.9e-29 2
UNIPROTKB|F1LNF1 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 284 5.9e-29 2
UNIPROTKB|E2RFV7 - symbol:HNRNPA3 "Uncharacterized protei... 292 7.6e-29 2
UNIPROTKB|F2Z5B4 - symbol:HNRNPA3 "Uncharacterized protei... 292 7.6e-29 2
RGD|727807 - symbol:Hnrnpa3 "heterogeneous nuclear ribonu... 292 7.6e-29 2
UNIPROTKB|E2QYP1 - symbol:HNRNPA1 "Uncharacterized protei... 286 7.6e-29 2
UNIPROTKB|F1Q3G7 - symbol:HNRNPA1 "Uncharacterized protei... 286 7.6e-29 2
RGD|1310403 - symbol:Hnrnpa2b1 "heterogeneous nuclear rib... 283 7.6e-29 2
UNIPROTKB|P09651 - symbol:HNRNPA1 "Heterogeneous nuclear ... 286 9.6e-29 2
UNIPROTKB|D4ACJ7 - symbol:Hnrnpa1 "RCG50547, isoform CRA_... 286 9.6e-29 2
UNIPROTKB|F1NBB6 - symbol:LOC100859627 "Uncharacterized p... 290 1.2e-28 2
UNIPROTKB|D4ACJ8 - symbol:Hnrnpa1 "Heterogeneous nuclear ... 286 1.6e-28 2
UNIPROTKB|F1RX74 - symbol:HNRNPA2B1 "Uncharacterized prot... 280 1.6e-28 2
UNIPROTKB|F1LM82 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 284 2.5e-28 2
MGI|MGI:107376 - symbol:Msi1 "musashi RNA-binding protein... 315 3.1e-28 1
UNIPROTKB|J9P972 - symbol:DAZAP1 "Uncharacterized protein... 314 3.9e-28 1
RGD|2321074 - symbol:LOC100360986 "mCG1035404-like" speci... 292 4.1e-28 2
UNIPROTKB|Q28521 - symbol:HNRNPA1 "Heterogeneous nuclear ... 291 4.1e-28 2
UNIPROTKB|Q32P51 - symbol:HNRNPA1L2 "Heterogeneous nuclea... 285 5.2e-28 2
ZFIN|ZDB-GENE-030131-618 - symbol:hnrnpa0l "heterogeneous... 276 5.2e-28 2
POMBASE|SPBC660.15 - symbol:SPBC660.15 "mRNA cleavage fac... 313 7.4e-28 1
TAIR|locus:2168848 - symbol:AT5G40490 species:3702 "Arabi... 272 8.3e-28 2
UNIPROTKB|P09867 - symbol:HNRNPA1 "Heterogeneous nuclear ... 286 8.4e-28 2
UNIPROTKB|F8VRQ1 - symbol:HNRNPA1 "Heterogeneous nuclear ... 286 8.4e-28 2
UNIPROTKB|F8VXY0 - symbol:HNRNPA1 "Heterogeneous nuclear ... 286 8.4e-28 2
UNIPROTKB|F8W6I7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 286 8.4e-28 2
UNIPROTKB|Q06A94 - symbol:HNRNPA1 "Uncharacterized protei... 286 8.4e-28 2
UNIPROTKB|A5A6H4 - symbol:HNRNPA1 "Heterogeneous nuclear ... 286 8.4e-28 2
MGI|MGI:104820 - symbol:Hnrnpa1 "heterogeneous nuclear ri... 286 8.4e-28 2
UNIPROTKB|Q5I0M7 - symbol:Hnrnpa1 "Hnrpa1 protein" specie... 286 8.4e-28 2
RGD|69234 - symbol:Hnrnpa1 "heterogeneous nuclear ribonuc... 286 8.4e-28 2
UNIPROTKB|D4AD23 - symbol:D4AD23 "Uncharacterized protein... 266 8.4e-28 2
ZFIN|ZDB-GENE-030131-6154 - symbol:hnrnpa0b "heterogeneou... 265 8.4e-28 2
WARNING: Descriptions of 964 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 514 (186.0 bits), Expect = 6.1e-56, Sum P(2) = 6.1e-56
Identities = 96/177 (54%), Positives = 129/177 (72%)
Query: 6 NGTAGPG-RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVT 64
N +A G R+D+RKLFVGGL T EKE+ D+F +YGE+ESI++K DP TG+SRGFAF+
Sbjct: 44 NQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIV 103
Query: 65 YTTQKAVDDLLAAGDHYIGNKKIDPKRVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQY 124
+T +A+D + AA +H I +KK+DPK+ R KIFVGGLTTEI++++++ YF Q+
Sbjct: 104 FTNTEAIDKVSAADEHIINSKKVDPKKAKARHG----KIFVGGLTTEISDEEIKTYFGQF 159
Query: 125 GSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFNPE 181
G+I E + PFDK K+ +KGFCFI+FD + V +LK PKQ I GKEVDVKR PE
Sbjct: 160 GNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPE 216
Score = 80 (33.2 bits), Expect = 6.1e-56, Sum P(2) = 6.1e-56
Identities = 20/40 (50%), Positives = 20/40 (50%)
Query: 299 GYTAGSY-DAYATAY-PGYDYSAMGYAYPA--PATSYGGG 334
GY AG Y D YA Y GYDY GY Y YGGG
Sbjct: 263 GYGAGGYGDYYAGGYYNGYDYGYDGYGYGGGFEGNGYGGG 302
Score = 46 (21.3 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
Identities = 14/34 (41%), Positives = 14/34 (41%)
Query: 303 GSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKY 336
GSY Y Y GY A GY Y GG Y
Sbjct: 252 GSYGGYGGGYGGY--GAGGYG-----DYYAGGYY 278
Score = 41 (19.5 bits), Expect = 7.7e-52, Sum P(2) = 7.7e-52
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 242 GYDYSAMGYAY 252
GYDY GY Y
Sbjct: 280 GYDYGYDGYGY 290
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 343 (125.8 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 64/167 (38%), Positives = 104/167 (62%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A D K+FVGGL +T +K++ DYF+++GEV +IK DP TG+SRGF F+ +
Sbjct: 66 ASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDS 125
Query: 69 KAVDDLLAAGDHYIGNKKIDPKR-VTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSI 127
+V+ +L +H + + IDPK+ + + +P+K KIFVGGL E TE+ +R+YF Q+G I
Sbjct: 126 SSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVK-KIFVGGLNPEATEEKIREYFGQFGEI 184
Query: 128 TEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVK 174
+ P D N ++GF FI+F +++ +VL+ + G + ++K
Sbjct: 185 EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIK 231
Score = 131 (51.2 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 23/74 (31%), Positives = 46/74 (62%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+FVGGL+ + +++D++DYF+++G + + D + +GF FI F D + ++VL
Sbjct: 75 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 134
Query: 162 PKQVICGKEVDVKR 175
+ + G+ +D K+
Sbjct: 135 KEHRLDGRVIDPKK 148
Score = 70 (29.7 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 16/38 (42%), Positives = 16/38 (42%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGG 334
N GY G Y Y GYDYS GY P Y G
Sbjct: 276 NQGY--GYQQGYGPGYGGYDYSPYGYYGYGPGYDYSQG 311
Score = 41 (19.5 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 242 GYDYSAMGY 250
GYDYS GY
Sbjct: 291 GYDYSPYGY 299
Score = 37 (18.1 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 241 PGYDYS 246
PGYDYS
Sbjct: 304 PGYDYS 309
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 343 (125.8 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 64/167 (38%), Positives = 104/167 (62%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A D K+FVGGL +T +K++ DYF+++GEV +IK DP TG+SRGF F+ +
Sbjct: 67 ASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDS 126
Query: 69 KAVDDLLAAGDHYIGNKKIDPKR-VTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSI 127
+V+ +L +H + + IDPK+ + + +P+K KIFVGGL E TE+ +R+YF Q+G I
Sbjct: 127 SSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVK-KIFVGGLNPEATEEKIREYFGQFGEI 185
Query: 128 TEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVK 174
+ P D N ++GF FI+F +++ +VL+ + G + ++K
Sbjct: 186 EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIK 232
Score = 131 (51.2 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 23/74 (31%), Positives = 46/74 (62%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+FVGGL+ + +++D++DYF+++G + + D + +GF FI F D + ++VL
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 162 PKQVICGKEVDVKR 175
+ + G+ +D K+
Sbjct: 136 KEHRLDGRVIDPKK 149
Score = 70 (29.7 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 16/38 (42%), Positives = 16/38 (42%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGG 334
N GY G Y Y GYDYS GY P Y G
Sbjct: 277 NQGY--GYQQGYGPGYGGYDYSPYGYYGYGPGYDYSQG 312
Score = 41 (19.5 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 242 GYDYSAMGY 250
GYDYS GY
Sbjct: 292 GYDYSPYGY 300
Score = 37 (18.1 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 241 PGYDYS 246
PGYDYS
Sbjct: 305 PGYDYS 310
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 337 (123.7 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
Identities = 63/167 (37%), Positives = 103/167 (61%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A D K+FVGGL +T +K++ DYF+++GEV +IK DP TG+SRGF F+ +
Sbjct: 62 ASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDA 121
Query: 69 KAVDDLLAAGDHYIGNKKIDPKR-VTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSI 127
+V+ +L +H + + IDPK+ + + +P+K KIFVGGL E TE+ +R+YF ++G I
Sbjct: 122 ASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVK-KIFVGGLNPEATEEKIREYFGEFGEI 180
Query: 128 TEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVK 174
+ P D N ++GF FI+F ++ +VL+ + G + ++K
Sbjct: 181 EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIK 227
Score = 127 (49.8 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 23/74 (31%), Positives = 45/74 (60%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+FVGGL+ + +++D++DYF+++G + + D + +GF FI F D ++VL
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 162 PKQVICGKEVDVKR 175
+ + G+ +D K+
Sbjct: 131 KEHRLDGRVIDPKK 144
Score = 70 (29.7 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
Identities = 16/38 (42%), Positives = 16/38 (42%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGG 334
N GY G Y Y GYDYS GY P Y G
Sbjct: 272 NQGY--GYQQGYGPGYGGYDYSPYGYYGYGPGYDYSQG 307
Score = 41 (19.5 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 242 GYDYSAMGY 250
GYDYS GY
Sbjct: 287 GYDYSPYGY 295
Score = 37 (18.1 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 241 PGYDYS 246
PGYDYS
Sbjct: 300 PGYDYS 305
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 344 (126.2 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 71/173 (41%), Positives = 107/173 (61%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A + D+ K+F+GGL +T +K++ DY S++GEV +IK DP TG+SRGF FV +
Sbjct: 22 ASKNQEDDGKMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDA 81
Query: 69 KAVDDLLAAGDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGS 126
++VD +L +H + K IDPKR K P K K+FVGGL+ +ITE+ +R+YF YG
Sbjct: 82 ESVDRVLELTEHKLDGKLIDPKRAKAIKGKEPPK-KVFVGGLSPDITEEQLREYFGVYGE 140
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGK-EVDVKRVK 177
I + P D N ++GFCF++F + ++L+N Q+ GK E+ V + K
Sbjct: 141 IESIELPTDTKTNERRGFCFVTFALEEPVQKLLENRYHQIGSGKCEIKVAQPK 193
Score = 57 (25.1 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 297 NYGYTAGS-YDAYATAYPGYDYSAMGYAYPAPATSYGGGK 335
NYG G+ Y+ Y GYDYS GY Y +YG G+
Sbjct: 234 NYGGGYGNGYNQGYNGYSGYDYS--GYNYQ----NYGYGQ 267
Score = 56 (24.8 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 299 GYTAGSYDAYATA-YPGYDYSAMGYA-----YPAPATSYGGGKYREAAAYPR-HAPY 348
GY G Y+ Y+ Y GY+Y GY Y +SYG R++ + + PY
Sbjct: 242 GYNQG-YNGYSGYDYSGYNYQNYGYGQGYDDYSGQQSSYGKAS-RDSGNHQNSYQPY 296
Score = 38 (18.4 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 296 ANYGYTAGSYDAYATAYPGYD-YSAMGYAY 324
+ Y Y+ +Y Y GYD YS +Y
Sbjct: 251 SGYDYSGYNYQNYGYGQ-GYDDYSGQQSSY 279
Score = 37 (18.1 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 8/11 (72%), Positives = 8/11 (72%)
Query: 242 GYDYSAMGYAY 252
GYDYS GY Y
Sbjct: 252 GYDYS--GYNY 260
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 346 (126.9 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 65/161 (40%), Positives = 99/161 (61%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A G D K+FVGGL +T +K++ DYFS++GEV +IK DP TG+SRGF F+ +
Sbjct: 87 ASKGEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEP 146
Query: 69 KAVDDLLAAGDHYIGNKKIDPKR-VTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSI 127
VD +LA +H + ++IDPK+ + + P+K KIFVGGL E TE+ +R+YF +G I
Sbjct: 147 SGVDKVLAQKEHRLDGRQIDPKKAMAMKKEPVK-KIFVGGLNPETTEERIREYFGAFGEI 205
Query: 128 TEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICG 168
+ P D N ++GF FI+F ++ ++L+ + G
Sbjct: 206 ETIELPMDPKSNKRRGFVFITFKEEEAVKKILEKKYHNVSG 246
Score = 152 (58.6 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGGL+ T E+ I +YF +GE+E+I + DP + + RGF F+T+ ++AV +L
Sbjct: 179 KKIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFKEEEAVKKILE 238
Query: 77 AGDHYIGNKK 86
H + K
Sbjct: 239 KKYHNVSGTK 248
Score = 141 (54.7 bits), Expect = 7.6e-09, Sum P(2) = 7.6e-09
Identities = 25/74 (33%), Positives = 48/74 (64%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+FVGGL+ + +++D++DYFS++G +T+ D + +GF FI F + + D+VL
Sbjct: 96 KMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKVLAQ 155
Query: 162 PKQVICGKEVDVKR 175
+ + G+++D K+
Sbjct: 156 KEHRLDGRQIDPKK 169
Score = 54 (24.1 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 19/50 (38%), Positives = 21/50 (42%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKYREAAAYPRHAPY 348
GY G+YD Y GY GY Y TSYG R A + PY
Sbjct: 324 GY--GNYDYSGGYYGGYG----GYDYNQGNTSYGKTP-RRGAHQSSYKPY 366
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 327 (120.2 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
Identities = 63/168 (37%), Positives = 103/168 (61%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A D K+FVGGL +T +K++ DYF+++GEV +IK DP TG+SRGF F+ +
Sbjct: 61 ASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDA 120
Query: 69 KAVDDLLAAGDHYIGNKKIDPKR-VTKRVNPLKCKIFVGGLTTEI-TEQDVRDYFSQYGS 126
+V+ +L +H + + IDPK+ + + +P+K KIFVGGL E TE+ +R+YF ++G
Sbjct: 121 ASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVK-KIFVGGLNPESPTEEKIREYFGEFGE 179
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVK 174
I + P D N ++GF FI+F ++ +VL+ + G + ++K
Sbjct: 180 IEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIK 227
Score = 127 (49.8 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 23/74 (31%), Positives = 45/74 (60%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+FVGGL+ + +++D++DYF+++G + + D + +GF FI F D ++VL
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 162 PKQVICGKEVDVKR 175
+ + G+ +D K+
Sbjct: 130 KEHRLDGRVIDPKK 143
Score = 70 (29.7 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
Identities = 16/38 (42%), Positives = 16/38 (42%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGG 334
N GY G Y Y GYDYS GY P Y G
Sbjct: 277 NQGY--GYQQGYGPGYGGYDYSPYGYYGYGPGYDYSQG 312
Score = 41 (19.5 bits), Expect = 3.4e-32, Sum P(2) = 3.4e-32
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 242 GYDYSAMGY 250
GYDYS GY
Sbjct: 292 GYDYSPYGY 300
Score = 37 (18.1 bits), Expect = 8.8e-32, Sum P(2) = 8.8e-32
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 241 PGYDYS 246
PGYDYS
Sbjct: 305 PGYDYS 310
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 325 (119.5 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 61/154 (39%), Positives = 98/154 (63%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
K+FVGGL +T +K++ DYF+++GEV +IK DP TG+SRGF F+ + +V+ +L
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 78 GDHYIGNKKIDPKR-VTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDK 136
+H + + IDPK+ + + +P+K KIFVGGL E TE+ +R+YF ++G I + P D
Sbjct: 61 KEHRLDGRVIDPKKAMAMKKDPVK-KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDP 119
Query: 137 SKNMKKGFCFISFDDQNVADQVLKNPKQVICGKE 170
N ++GF FI+F ++ +VL+ I G +
Sbjct: 120 KSNKRRGFVFITFKEEEPVKKVLEKKFHTISGSK 153
Score = 147 (56.8 bits), Expect = 4.9e-12, Sum P(2) = 4.9e-12
Identities = 26/70 (37%), Positives = 44/70 (62%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGGL+ E++I +YF ++GE+E+I + DP + + RGF F+T+ ++ V +L
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 143
Query: 77 AGDHYIGNKK 86
H I K
Sbjct: 144 KKFHTISGSK 153
Score = 127 (49.8 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 23/74 (31%), Positives = 45/74 (60%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+FVGGL+ + +++D++DYF+++G + + D + +GF FI F D ++VL
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 162 PKQVICGKEVDVKR 175
+ + G+ +D K+
Sbjct: 61 KEHRLDGRVIDPKK 74
Score = 70 (29.7 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 16/38 (42%), Positives = 16/38 (42%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGG 334
N GY G Y Y GYDYS GY P Y G
Sbjct: 209 NQGY--GYQQGYGPGYGGYDYSPYGYYGYGPGYDYSQG 244
Score = 41 (19.5 bits), Expect = 5.5e-32, Sum P(2) = 5.5e-32
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 242 GYDYSAMGY 250
GYDYS GY
Sbjct: 224 GYDYSPYGY 232
Score = 37 (18.1 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 241 PGYDYS 246
PGYDYS
Sbjct: 237 PGYDYS 242
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 331 (121.6 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 61/158 (38%), Positives = 102/158 (64%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
K+FVGGL +T +K++ DYF+++GEV +IK DP TG+SRGF F+ + +V+ +L
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 78 GDHYIGNKKIDPKR-VTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDK 136
+H + + IDPK+ + + +P+K KIFVGGL E TE+ +R+YF ++G I + P D
Sbjct: 61 KEHRLDGRLIDPKKAMAMKKDPVK-KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDP 119
Query: 137 SKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVK 174
N ++GF FI+F +++ +VL+ + G + ++K
Sbjct: 120 KTNKRRGFVFITFKEEDPVKKVLEKKFHNVSGSKCEIK 157
Score = 151 (58.2 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGGL+ E++I +YF ++GE+E+I + DP T + RGF F+T+ + V +L
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLE 143
Query: 77 AGDHYIGNKKIDPK 90
H + K + K
Sbjct: 144 KKFHNVSGSKCEIK 157
Score = 131 (51.2 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 23/74 (31%), Positives = 47/74 (63%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+FVGGL+ + +++D++DYF+++G +T+ D + +GF FI F + ++VL+
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 162 PKQVICGKEVDVKR 175
+ + G+ +D K+
Sbjct: 61 KEHRLDGRLIDPKK 74
Score = 63 (27.2 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 16/37 (43%), Positives = 16/37 (43%)
Query: 298 YGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGG 334
YGY G Y Y GYDYS GY P Y G
Sbjct: 212 YGYQQG-YGGYG----GYDYSGYGYYGYGPGYDYSQG 243
Score = 42 (19.8 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 242 GYDYSAMGY 250
GYDYS GY
Sbjct: 223 GYDYSGYGY 231
Score = 40 (19.1 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 9/25 (36%), Positives = 9/25 (36%)
Query: 312 YPGYDYSAMGYAYPAPATSYGGGKY 336
Y Y GY Y YGG Y
Sbjct: 202 YWNQGYGNQGYGYQQGYGGYGGYDY 226
Score = 37 (18.1 bits), Expect = 3.4e-32, Sum P(2) = 3.4e-32
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 241 PGYDYS 246
PGYDYS
Sbjct: 236 PGYDYS 241
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 335 (123.0 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 61/154 (39%), Positives = 97/154 (62%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A DE K+F+GGL +T +K++ DYFS++GEV ++K DP TG+SRGF FV +
Sbjct: 37 ASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 96
Query: 69 KAVDDLLAAGDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGS 126
++VD ++ +H + K IDPKR K P+K KIFVGGL+ + E+ +R+YF +G
Sbjct: 97 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK-KIFVGGLSPDTPEEKIREYFGGFGE 155
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK 160
+ + P D N ++GFCFI+F ++ ++++
Sbjct: 156 VESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 189
Score = 150 (57.9 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGGL +T E++I +YF +GEVESI + D T + RGF F+T+ ++ V ++
Sbjct: 130 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 189
Query: 77 AGDHYIGNKKIDPK 90
H +G K + K
Sbjct: 190 KKYHNVGLSKCEIK 203
Score = 143 (55.4 bits), Expect = 9.0e-10, Sum P(2) = 9.0e-10
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GGL+ + T++D++DYFS++G + + D +GF F+ F + D+V+
Sbjct: 46 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 105
Query: 162 PKQVICGKEVDVKRVK 177
+ + GK +D KR K
Sbjct: 106 KEHKLNGKVIDPKRAK 121
Score = 57 (25.1 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 17/56 (30%), Positives = 22/56 (39%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMG--YAYPAPATSYGG-GKYREAAAYPR-HAPY 348
NYGY + Y Y GYDY+ Y Y + G GK + + PY
Sbjct: 252 NYGYNSQGYGGYG----GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 303
Score = 41 (19.5 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKYREAAAYPRHAPY 348
N GY+ +Y + Y Y Y++ GY YGG Y Y + Y
Sbjct: 239 NQGYS--NY--WNQGYGNYGYNSQGYG------GYGGYDYTGYNNYYGYGDY 280
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 328 (120.5 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 65/173 (37%), Positives = 106/173 (61%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A + D+ K+F+GGL +T +K++ +Y S++GEV +IK DP TG+SRGF FV +
Sbjct: 58 ASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDA 117
Query: 69 KAVDDLLAAGDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGS 126
+V+ +L +H + K IDPKR K P K K+FVGGL+ + +E+ +++YF +G
Sbjct: 118 ASVEKVLELKEHKLDGKLIDPKRAKALKGKEPPK-KVFVGGLSPDTSEEQIKEYFGAFGE 176
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGK-EVDVKRVK 177
I + P D N ++GFCFI++ D+ ++L++ Q+ GK E+ V + K
Sbjct: 177 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 229
Score = 64 (27.6 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 295 EANYG-YTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKYREAAA 341
+ YG Y + D + Y GYDYS GY YP YG G Y + +A
Sbjct: 273 DQGYGNYNSAYSDQSYSGYGGYDYS--GYNYPN--YGYGPG-YTDYSA 315
Score = 54 (24.1 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 298 YGYTAGSYDAYATAYPGY-DYSAMGYAYPAPATSYGGGKYR 337
Y Y+ +Y Y PGY DYSA G S GGG ++
Sbjct: 294 YDYSGYNYPNYGYG-PGYTDYSA-GQQSTYGKASRGGGNHQ 332
Score = 44 (20.5 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 242 GYDYSAMGYAYP 253
GYDYS GY YP
Sbjct: 293 GYDYS--GYNYP 302
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 328 (120.5 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 65/173 (37%), Positives = 106/173 (61%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A + D+ K+F+GGL +T +K++ +Y S++GEV +IK DP TG+SRGF FV +
Sbjct: 22 ASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDA 81
Query: 69 KAVDDLLAAGDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGS 126
+V+ +L +H + K IDPKR K P K K+FVGGL+ + +E+ +++YF +G
Sbjct: 82 ASVEKVLELKEHKLDGKLIDPKRAKALKGKEPPK-KVFVGGLSPDTSEEQIKEYFGAFGE 140
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGK-EVDVKRVK 177
I + P D N ++GFCFI++ D+ ++L++ Q+ GK E+ V + K
Sbjct: 141 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 193
Score = 62 (26.9 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 295 EANYG-YTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGG 334
+ YG Y + D + Y GYDYS GY YP +YG G
Sbjct: 237 DQGYGNYNSAYSDQSYSGYGGYDYS--GYNYP----NYGYG 271
Score = 55 (24.4 bits), Expect = 9.0e-34, Sum P(2) = 9.0e-34
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 292 HMEEANYGYTAGSYDAYATAYPGYDYSAMGYA-YPAPATSYG 332
+ +++ GY G YD YP Y Y GY Y ++YG
Sbjct: 247 YSDQSYSGY--GGYDYSGYNYPNYGYGP-GYTDYSGQQSTYG 285
Score = 44 (20.5 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 242 GYDYSAMGYAYP 253
GYDYS GY YP
Sbjct: 257 GYDYS--GYNYP 266
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 327 (120.2 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
Identities = 60/158 (37%), Positives = 100/158 (63%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
K+FVGGL +T +K++ DYF+++GEV +IK DP TG+SRGF F+ + ++VD +L
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEH 124
Query: 78 GDHYIGNKKIDPKR-VTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDK 136
+H + + IDPK+ + + +P+K KIFVGGL E E +R+YF +G I + P D
Sbjct: 125 KEHRLDGRLIDPKKAMAMKKDPIK-KIFVGGLNPEAGEDQIREYFETFGEIEAIELPMDP 183
Query: 137 SKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVK 174
N ++GF FI+F +++ ++L+ + G + ++K
Sbjct: 184 KTNKRRGFVFITFKEEDPVKKILEKKFHNVSGSKCEIK 221
Score = 156 (60.0 bits), Expect = 8.8e-12, Sum P(2) = 8.8e-12
Identities = 28/74 (37%), Positives = 44/74 (59%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGGL+ GE +I +YF +GE+E+I + DP T + RGF F+T+ + V +L
Sbjct: 148 KKIFVGGLNPEAGEDQIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKILE 207
Query: 77 AGDHYIGNKKIDPK 90
H + K + K
Sbjct: 208 KKFHNVSGSKCEIK 221
Score = 136 (52.9 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 24/74 (32%), Positives = 48/74 (64%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+FVGGL+ + +++D++DYF+++G +++ D + +GF FI F D D+VL++
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEH 124
Query: 162 PKQVICGKEVDVKR 175
+ + G+ +D K+
Sbjct: 125 KEHRLDGRLIDPKK 138
Score = 62 (26.9 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
Identities = 17/52 (32%), Positives = 18/52 (34%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKYREAAAYPRHAPY 348
N GY Y Y YDYS GY P Y G A PR +
Sbjct: 268 NQGYGGYGQQGYG-GYGNYDYSGYGYYGYGPGYDYSQGSANYGKA-PRRGSH 317
Score = 37 (18.1 bits), Expect = 8.8e-32, Sum P(2) = 8.8e-32
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 241 PGYDYS 246
PGYDYS
Sbjct: 297 PGYDYS 302
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 335 (123.0 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 63/161 (39%), Positives = 100/161 (62%)
Query: 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDL 74
D K+FVGGL +T +K++ DYFS++GEV +IK D TG+SRGF F+ + +VD +
Sbjct: 43 DAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDRV 102
Query: 75 LAAGDHYIGNKKIDPKRVTK-RVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQP 133
L +H + ++IDPKR + P+K KIFVGGL E TE+ +R+YF +G I + P
Sbjct: 103 LQQKEHRLDGRQIDPKRAMAIKKEPVK-KIFVGGLNPETTEEKIREYFGSFGEIETIELP 161
Query: 134 FDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVK 174
D + ++GF FI+F ++ ++L+ +CG + ++K
Sbjct: 162 TDPKTSKRRGFVFITFKEEFAVKKILEKKYHNVCGSKCEIK 202
Score = 145 (56.1 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 31/101 (30%), Positives = 59/101 (58%)
Query: 76 AAGDHYIGNK-KIDPKRVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPF 134
AAG++ G +ID + + K+FVGGL+ + +++D++DYFS++G + +
Sbjct: 23 AAGENGAGEGLQIDASKCEEDAG----KMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKM 78
Query: 135 DKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
D + +GF FI F + + D+VL+ + + G+++D KR
Sbjct: 79 DSNTGRSRGFGFILFKESDSVDRVLQQKEHRLDGRQIDPKR 119
Score = 53 (23.7 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGG 333
NY Y++G Y Y + GYDY+ G A GG
Sbjct: 269 NYDYSSGYY-GYGS---GYDYTDQGAASYGKTPRRGG 301
Score = 51 (23.0 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 298 YGYTAGS-YDAYATAYPGYDYSAMGYAYPA--PATSYGGGKY 336
YGY Y Y Y YDYS+ Y Y + T G Y
Sbjct: 253 YGYGGQQGYGGYG-GYGNYDYSSGYYGYGSGYDYTDQGAASY 293
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 331 (121.6 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 60/154 (38%), Positives = 98/154 (63%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A + +E K+F+GGL +T +K++ DYFS++GEV ++K DP TG+SRGF FV +
Sbjct: 89 AATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 69 KAVDDLLAAGDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGS 126
++VD ++ +H + K IDPKR K P+K KIFVGGL+ + E+ +R+YF +G
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK-KIFVGGLSPDTPEEKIREYFGGFGE 207
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK 160
+ + P D N ++GFCFI+F ++ ++++
Sbjct: 208 VESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Score = 150 (57.9 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGGL +T E++I +YF +GEVESI + D T + RGF F+T+ ++ V ++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 77 AGDHYIGNKKIDPK 90
H +G K + K
Sbjct: 242 KKYHNVGLSKCEIK 255
Score = 143 (55.4 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GGL+ + T++D++DYFS++G + + D +GF F+ F + D+V+
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 162 PKQVICGKEVDVKRVK 177
+ + GK +D KR K
Sbjct: 158 KEHKLNGKVIDPKRAK 173
Score = 57 (25.1 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 17/56 (30%), Positives = 22/56 (39%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMG--YAYPAPATSYGG-GKYREAAAYPR-HAPY 348
NYGY + Y Y GYDY+ Y Y + G GK + + PY
Sbjct: 304 NYGYNSQGYGGYG----GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
Score = 41 (19.5 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKYREAAAYPRHAPY 348
N GY+ +Y + Y Y Y++ GY YGG Y Y + Y
Sbjct: 291 NQGYS--NY--WNQGYGNYGYNSQGYG------GYGGYDYTGYNNYYGYGDY 332
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 331 (121.6 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 60/154 (38%), Positives = 98/154 (63%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A + +E K+F+GGL +T +K++ DYFS++GEV ++K DP TG+SRGF FV +
Sbjct: 89 AATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 69 KAVDDLLAAGDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGS 126
++VD ++ +H + K IDPKR K P+K KIFVGGL+ + E+ +R+YF +G
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK-KIFVGGLSPDTPEEKIREYFGGFGE 207
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK 160
+ + P D N ++GFCFI+F ++ ++++
Sbjct: 208 VESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Score = 150 (57.9 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGGL +T E++I +YF +GEVESI + D T + RGF F+T+ ++ V ++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 77 AGDHYIGNKKIDPK 90
H +G K + K
Sbjct: 242 KKYHNVGLSKCEIK 255
Score = 143 (55.4 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GGL+ + T++D++DYFS++G + + D +GF F+ F + D+V+
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 162 PKQVICGKEVDVKRVK 177
+ + GK +D KR K
Sbjct: 158 KEHKLNGKVIDPKRAK 173
Score = 57 (25.1 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 17/56 (30%), Positives = 22/56 (39%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMG--YAYPAPATSYGG-GKYREAAAYPR-HAPY 348
NYGY + Y Y GYDY+ Y Y + G GK + + PY
Sbjct: 304 NYGYNSQGYGGYG----GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
Score = 41 (19.5 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKYREAAAYPRHAPY 348
N GY+ +Y + Y Y Y++ GY YGG Y Y + Y
Sbjct: 291 NQGYS--NY--WNQGYGNYGYNSQGYG------GYGGYDYTGYNNYYGYGDY 332
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 331 (121.6 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 60/154 (38%), Positives = 98/154 (63%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A + +E K+F+GGL +T +K++ DYFS++GEV ++K DP TG+SRGF FV +
Sbjct: 89 AATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 69 KAVDDLLAAGDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGS 126
++VD ++ +H + K IDPKR K P+K KIFVGGL+ + E+ +R+YF +G
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK-KIFVGGLSPDTPEEKIREYFGGFGE 207
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK 160
+ + P D N ++GFCFI+F ++ ++++
Sbjct: 208 VESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Score = 150 (57.9 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGGL +T E++I +YF +GEVESI + D T + RGF F+T+ ++ V ++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 77 AGDHYIGNKKIDPK 90
H +G K + K
Sbjct: 242 KKYHNVGLSKCEIK 255
Score = 143 (55.4 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GGL+ + T++D++DYFS++G + + D +GF F+ F + D+V+
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 162 PKQVICGKEVDVKRVK 177
+ + GK +D KR K
Sbjct: 158 KEHKLNGKVIDPKRAK 173
Score = 57 (25.1 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 17/56 (30%), Positives = 22/56 (39%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMG--YAYPAPATSYGG-GKYREAAAYPR-HAPY 348
NYGY + Y Y GYDY+ Y Y + G GK + + PY
Sbjct: 304 NYGYNSQGYGGYG----GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
Score = 41 (19.5 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKYREAAAYPRHAPY 348
N GY+ +Y + Y Y Y++ GY YGG Y Y + Y
Sbjct: 291 NQGYS--NY--WNQGYGNYGYNSQGYG------GYGGYDYTGYNNYYGYGDY 332
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 331 (121.6 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 60/154 (38%), Positives = 98/154 (63%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A + +E K+F+GGL +T +K++ DYFS++GEV ++K DP TG+SRGF FV +
Sbjct: 89 AAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 69 KAVDDLLAAGDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGS 126
++VD ++ +H + K IDPKR K P+K KIFVGGL+ + E+ +R+YF +G
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK-KIFVGGLSPDTPEEKIREYFGGFGE 207
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK 160
+ + P D N ++GFCFI+F ++ ++++
Sbjct: 208 VESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Score = 150 (57.9 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGGL +T E++I +YF +GEVESI + D T + RGF F+T+ ++ V ++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 77 AGDHYIGNKKIDPK 90
H +G K + K
Sbjct: 242 KKYHNVGLSKCEIK 255
Score = 143 (55.4 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GGL+ + T++D++DYFS++G + + D +GF F+ F + D+V+
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 162 PKQVICGKEVDVKRVK 177
+ + GK +D KR K
Sbjct: 158 KEHKLNGKVIDPKRAK 173
Score = 57 (25.1 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 17/56 (30%), Positives = 22/56 (39%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMG--YAYPAPATSYGG-GKYREAAAYPR-HAPY 348
NYGY + Y Y GYDY+ Y Y + G GK + + PY
Sbjct: 304 NYGYNSQGYGGYG----GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
Score = 41 (19.5 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKYREAAAYPRHAPY 348
N GY+ +Y + Y Y Y++ GY YGG Y Y + Y
Sbjct: 291 NQGYS--NY--WNQGYGNYGYNSQGYG------GYGGYDYTGYNNYYGYGDY 332
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 330 (121.2 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 62/168 (36%), Positives = 102/168 (60%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A DE K+FVGGL +T +K++ DYF+++GEV ++K DP TG+SRGF FV +
Sbjct: 46 ASKNEEDEGKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEA 105
Query: 69 KAVDDLLAAGDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGS 126
++V+ ++ +H + K IDPK+ K P+K KIFVGGL+ + E+ +R+YF YG
Sbjct: 106 ESVEKVITQKEHKLNGKVIDPKKAKAMKTKEPVK-KIFVGGLSPDTPEEKIREYFDAYGE 164
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVK 174
+ + P + N ++GFCFI+F ++ ++++ I + +VK
Sbjct: 165 VESIELPMENKTNKRRGFCFITFKEEEPVKKIMEKKYHNIGLSKCEVK 212
Score = 133 (51.9 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 23/76 (30%), Positives = 45/76 (59%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+FVGGL+ + T++D++DYF+++G + + D +GF F+ F + ++V+
Sbjct: 55 KMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEKVITQ 114
Query: 162 PKQVICGKEVDVKRVK 177
+ + GK +D K+ K
Sbjct: 115 KEHKLNGKVIDPKKAK 130
Score = 58 (25.5 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 18/56 (32%), Positives = 22/56 (39%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMG--YAYPAPATSYGG-GKYREAAAYPR-HAPY 348
NYGY Y Y GYDYS Y Y + G GK + + + PY
Sbjct: 263 NYGYNNQGYGGYG----GYDYSGYNNYYGYGDYSNQQSGYGKSQRRGGHQNSYKPY 314
>UNIPROTKB|F1N2T0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
Uniprot:F1N2T0
Length = 420
Score = 332 (121.9 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
Identities = 66/173 (38%), Positives = 106/173 (61%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A + D+ K+F+GGL +T +K++ +Y S++GEV +IK DP TG+SRGF FV +
Sbjct: 140 ASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDA 199
Query: 69 KAVDDLLAAGDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGS 126
+VD +L +H + K IDPKR K P K K+FVGGL+ + +E+ +++YF +G
Sbjct: 200 ASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPK-KVFVGGLSPDTSEEQIKEYFGAFGE 258
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGK-EVDVKRVK 177
I + P D N ++GFCFI++ D+ ++L++ Q+ GK E+ V + K
Sbjct: 259 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 311
Score = 54 (24.1 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 295 EANY-GYTAGSYDAYATAYPGYDYSAMGYA-YPAPATSYG 332
+ NY GY G YD Y Y Y GYA Y ++YG
Sbjct: 368 DQNYSGY--GGYDYTGYNYGNYGYG-QGYADYSGQQSTYG 404
Score = 49 (22.3 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGK 335
NY G Y+ Y GYDY+ GY Y +YG G+
Sbjct: 360 NYNSAYGGDQNYS-GYGGYDYT--GYNYG----NYGYGQ 391
>UNIPROTKB|E2QRT0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
Length = 420
Score = 332 (121.9 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
Identities = 66/173 (38%), Positives = 106/173 (61%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A + D+ K+F+GGL +T +K++ +Y S++GEV +IK DP TG+SRGF FV +
Sbjct: 140 ASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDA 199
Query: 69 KAVDDLLAAGDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGS 126
+VD +L +H + K IDPKR K P K K+FVGGL+ + +E+ +++YF +G
Sbjct: 200 ASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPK-KVFVGGLSPDTSEEQIKEYFGAFGE 258
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGK-EVDVKRVK 177
I + P D N ++GFCFI++ D+ ++L++ Q+ GK E+ V + K
Sbjct: 259 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 311
Score = 54 (24.1 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 295 EANY-GYTAGSYDAYATAYPGYDYSAMGYA-YPAPATSYG 332
+ NY GY G YD Y Y Y GYA Y ++YG
Sbjct: 368 DQNYSGY--GGYDYTGYNYGNYGYG-QGYADYSGQQSTYG 404
Score = 49 (22.3 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGK 335
NY G Y+ Y GYDY+ GY Y +YG G+
Sbjct: 360 NYNSAYGGDQNYS-GYGGYDYT--GYNYG----NYGYGQ 391
>UNIPROTKB|O14979 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
of gene expression" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
Length = 420
Score = 332 (121.9 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
Identities = 66/173 (38%), Positives = 106/173 (61%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A + D+ K+F+GGL +T +K++ +Y S++GEV +IK DP TG+SRGF FV +
Sbjct: 140 ASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDA 199
Query: 69 KAVDDLLAAGDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGS 126
+VD +L +H + K IDPKR K P K K+FVGGL+ + +E+ +++YF +G
Sbjct: 200 ASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPK-KVFVGGLSPDTSEEQIKEYFGAFGE 258
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGK-EVDVKRVK 177
I + P D N ++GFCFI++ D+ ++L++ Q+ GK E+ V + K
Sbjct: 259 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 311
Score = 54 (24.1 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 295 EANY-GYTAGSYDAYATAYPGYDYSAMGYA-YPAPATSYG 332
+ NY GY G YD Y Y Y GYA Y ++YG
Sbjct: 368 DQNYSGY--GGYDYTGYNYGNYGYG-QGYADYSGQQSTYG 404
Score = 49 (22.3 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGK 335
NY G Y+ Y GYDY+ GY Y +YG G+
Sbjct: 360 NYNSAYGGDQNYS-GYGGYDYT--GYNYG----NYGYGQ 391
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 332 (121.9 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
Identities = 66/173 (38%), Positives = 106/173 (61%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A + D+ K+F+GGL +T +K++ +Y S++GEV +IK DP TG+SRGF FV +
Sbjct: 21 ASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDA 80
Query: 69 KAVDDLLAAGDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGS 126
+VD +L +H + K IDPKR K P K K+FVGGL+ + +E+ +++YF +G
Sbjct: 81 ASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPK-KVFVGGLSPDTSEEQIKEYFGAFGE 139
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGK-EVDVKRVK 177
I + P D N ++GFCFI++ D+ ++L++ Q+ GK E+ V + K
Sbjct: 140 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 192
Score = 54 (24.1 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 295 EANY-GYTAGSYDAYATAYPGYDYSAMGYA-YPAPATSYG 332
+ NY GY G YD Y Y Y GYA Y ++YG
Sbjct: 249 DQNYSGY--GGYDYTGYNYGNYGYG-QGYADYSGQQSTYG 285
Score = 49 (22.3 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGK 335
NY G Y+ Y GYDY+ GY Y +YG G+
Sbjct: 241 NYNSAYGGDQNYS-GYGGYDYT--GYNYG----NYGYGQ 272
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 331 (121.6 bits), Expect = 9.0e-34, Sum P(2) = 9.0e-34
Identities = 60/154 (38%), Positives = 98/154 (63%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A + +E K+F+GGL +T +K++ DYFS++GEV ++K DP TG+SRGF FV +
Sbjct: 22 AATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 81
Query: 69 KAVDDLLAAGDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGS 126
++VD ++ +H + K IDPKR K P+K KIFVGGL+ + E+ +R+YF +G
Sbjct: 82 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK-KIFVGGLSPDTPEEKIREYFGGFGE 140
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK 160
+ + P D N ++GFCFI+F ++ ++++
Sbjct: 141 VESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 174
Score = 150 (57.9 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGGL +T E++I +YF +GEVESI + D T + RGF F+T+ ++ V ++
Sbjct: 115 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 174
Query: 77 AGDHYIGNKKIDPK 90
H +G K + K
Sbjct: 175 KKYHNVGLSKCEIK 188
Score = 143 (55.4 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GGL+ + T++D++DYFS++G + + D +GF F+ F + D+V+
Sbjct: 31 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 90
Query: 162 PKQVICGKEVDVKRVK 177
+ + GK +D KR K
Sbjct: 91 KEHKLNGKVIDPKRAK 106
Score = 52 (23.4 bits), Expect = 9.0e-34, Sum P(2) = 9.0e-34
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMGY 322
NYGY + Y Y GYDY+ GY
Sbjct: 237 NYGYNSQGYGGYG----GYDYT--GY 256
Score = 40 (19.1 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKY 336
N GY+ +Y + Y Y Y++ GY YGG Y
Sbjct: 224 NQGYS--NY--WNQGYGNYGYNSQGYG------GYGGYDY 253
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 324 (119.1 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 58/145 (40%), Positives = 94/145 (64%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
K+F+GGL +T +K++ DYFS++GEV ++K DP TG+SRGF FV + ++VD ++
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 78 GDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFD 135
+H + K IDPKR K P+K KIFVGGL+ + E+ +R+YF +G + + P D
Sbjct: 61 KEHKLNGKVIDPKRAKAMKTKEPVK-KIFVGGLSPDTPEEKIREYFGAFGEVESIELPMD 119
Query: 136 KSKNMKKGFCFISFDDQNVADQVLK 160
N ++GFCFI+F ++ ++++
Sbjct: 120 NKTNKRRGFCFITFKEEEPVKKIME 144
Score = 151 (58.2 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGGL +T E++I +YF +GEVESI + D T + RGF F+T+ ++ V ++
Sbjct: 85 KKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 144
Query: 77 AGDHYIGNKKIDPK 90
H +G K + K
Sbjct: 145 KKYHNVGLSKCEIK 158
Score = 143 (55.4 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GGL+ + T++D++DYFS++G + + D +GF F+ F + D+V+
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 162 PKQVICGKEVDVKRVK 177
+ + GK +D KR K
Sbjct: 61 KEHKLNGKVIDPKRAK 76
Score = 58 (25.5 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 17/56 (30%), Positives = 22/56 (39%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMG--YAYPAPATSYGG-GKYREAAAYPR-HAPY 348
NYGY + Y Y GYDY+ Y Y + G GK + + PY
Sbjct: 207 NYGYNSQGYGGYG----GYDYTGYNNYYGYSDYSNQQSGYGKVSRRGGHQNSYKPY 258
Score = 42 (19.8 bits), Expect = 5.5e-32, Sum P(2) = 5.5e-32
Identities = 15/52 (28%), Positives = 22/52 (42%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKYREAAAYPRHAPY 348
N GY+ +Y + Y Y Y++ GY YGG Y Y ++ Y
Sbjct: 194 NQGYS--NY--WNQGYGNYGYNSQGYG------GYGGYDYTGYNNYYGYSDY 235
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 324 (119.1 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 70/192 (36%), Positives = 106/192 (55%)
Query: 2 SYRANGTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFA 61
S +G+A ++D K+F+GGL T + DYFS++GE+ + DP T +SRGF
Sbjct: 6 SQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFG 65
Query: 62 FVTYTTQKAVDDLLAAGDHYIGNKKIDPK-RVTKRVNPLKC----KIFVGGLTTEITEQD 116
FVT+ +VD +L H + +K IDPK +R P KIFVGGL+ +D
Sbjct: 66 FVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVED 125
Query: 117 VRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK------NPKQVICGKE 170
V+ YF Q+G + + FDK+ N +GF F++F++++V ++V + N K V C K+
Sbjct: 126 VKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVEC-KK 184
Query: 171 VDVKRVKFNPET 182
K V F P T
Sbjct: 185 AQPKEVMFPPGT 196
Score = 56 (24.8 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 308 YATAYPGYDYSAMGYAYPA-PATSYG 332
Y YPG+ S GY +P PA +YG
Sbjct: 226 YGRGYPGFAPS-YGYQFPGFPAAAYG 250
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 324 (119.1 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
Identities = 70/192 (36%), Positives = 106/192 (55%)
Query: 2 SYRANGTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFA 61
S +G+ ++D K+F+GGL T + DYFS++GE+ + DP T +SRGF
Sbjct: 6 SQATSGSPNDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFG 65
Query: 62 FVTYTTQKAVDDLLAAGDHYIGNKKIDPK-RVTKRVNPLKC----KIFVGGLTTEITEQD 116
FVT+ +VD +LA H + +K IDPK +R P KIFVGGL+ +D
Sbjct: 66 FVTFADAASVDKVLAQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVED 125
Query: 117 VRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK------NPKQVICGKE 170
V+ YF Q+G + + FDK+ N +GF F++F++++V ++V + N K V C K+
Sbjct: 126 VKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVEC-KK 184
Query: 171 VDVKRVKFNPET 182
K V F P T
Sbjct: 185 AQPKEVMFPPGT 196
Score = 55 (24.4 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKYREAAAYPRHAPY 348
GYT G +Y+ +PG+ +A G A A + G R A +A Y
Sbjct: 229 GYT-GFAPSYSYQFPGFPATAYGPVAAAAAVAAARGSGRGARGRGGYAAY 277
Score = 48 (22.0 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 290 LLHMEEANYGYTAGSYDAYATAY-PGYDYSAMGYAYPAPATSYG 332
+L M +Y +Y T + P Y Y G+ PAT+YG
Sbjct: 211 MLGMGMLSYPNIVATYGRGYTGFAPSYSYQFPGF----PATAYG 250
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 323 (118.8 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
Identities = 69/188 (36%), Positives = 105/188 (55%)
Query: 6 NGTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTY 65
+G+A ++D K+F+GGL T + DYFS++GE+ + DP T +SRGF FVT+
Sbjct: 10 SGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTF 69
Query: 66 TTQKAVDDLLAAGDHYIGNKKIDPK-RVTKRVNPLKC----KIFVGGLTTEITEQDVRDY 120
+VD +L H + +K IDPK +R P KIFVGGL+ +DV+ Y
Sbjct: 70 ADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQY 129
Query: 121 FSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK------NPKQVICGKEVDVK 174
F Q+G + + FDK+ N +GF F++F++++V ++V + N K V C K+ K
Sbjct: 130 FEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVEC-KKAQPK 188
Query: 175 RVKFNPET 182
V F P T
Sbjct: 189 EVMFPPGT 196
Score = 56 (24.8 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 308 YATAYPGYDYSAMGYAYPA-PATSYG 332
Y YPG+ S GY +P PA +YG
Sbjct: 226 YGRGYPGFAPS-YGYQFPGFPAAAYG 250
Score = 42 (19.8 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
Identities = 14/50 (28%), Positives = 20/50 (40%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKYREAAAYPRH-AP 347
GY G +Y +PG+ +A G A + G +A P AP
Sbjct: 229 GYP-GFAPSYGYQFPGFPAAAYGPVAAAAVAAARGSVLNSYSAQPNFGAP 277
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 319 (117.4 bits), Expect = 3.8e-33, Sum P(2) = 3.8e-33
Identities = 57/144 (39%), Positives = 93/144 (64%)
Query: 19 LFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG 78
+F+GGL +T +K++ DYFS++GEV ++K DP TG+SRGF FV + ++VD ++
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 79 DHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDK 136
+H + K IDPKR K P+K KIFVGGL+ + E+ +R+YF +G + + P D
Sbjct: 61 EHKLNGKVIDPKRAKAMKTKEPVK-KIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDN 119
Query: 137 SKNMKKGFCFISFDDQNVADQVLK 160
N ++GFCFI+F ++ ++++
Sbjct: 120 KTNKRRGFCFITFKEEEPVKKIME 143
Score = 151 (58.2 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGGL +T E++I +YF +GEVESI + D T + RGF F+T+ ++ V ++
Sbjct: 84 KKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 143
Query: 77 AGDHYIGNKKIDPK 90
H +G K + K
Sbjct: 144 KKYHNVGLSKCEIK 157
Score = 138 (53.6 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 103 IFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP 162
+F+GGL+ + T++D++DYFS++G + + D +GF F+ F + D+V+
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 163 KQVICGKEVDVKRVK 177
+ + GK +D KR K
Sbjct: 61 EHKLNGKVIDPKRAK 75
Score = 58 (25.5 bits), Expect = 3.8e-33, Sum P(2) = 3.8e-33
Identities = 17/56 (30%), Positives = 22/56 (39%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMG--YAYPAPATSYGG-GKYREAAAYPR-HAPY 348
NYGY + Y Y GYDY+ Y Y + G GK + + PY
Sbjct: 206 NYGYNSQGYGGYG----GYDYTGYNNYYGYSDYSNQQSGYGKVSRRGGHQNSYKPY 257
Score = 42 (19.8 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 15/52 (28%), Positives = 22/52 (42%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKYREAAAYPRHAPY 348
N GY+ +Y + Y Y Y++ GY YGG Y Y ++ Y
Sbjct: 193 NQGYS--NY--WNQGYGNYGYNSQGYG------GYGGYDYTGYNNYYGYSDY 234
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 332 (121.9 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
Identities = 60/154 (38%), Positives = 97/154 (62%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A DE K+F+GGL +T +K++ DYFS++G+V ++K DP TG+SRGF FV +
Sbjct: 68 ASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKES 127
Query: 69 KAVDDLLAAGDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGS 126
++VD ++ +H + K IDPKR K P+K KIFVGGL+ + E+ +R+YF +G
Sbjct: 128 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK-KIFVGGLSPDTPEEKIREYFGGFGE 186
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK 160
+ + P D N ++GFCFI+F ++ ++++
Sbjct: 187 VESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 220
Score = 150 (57.9 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGGL +T E++I +YF +GEVESI + D T + RGF F+T+ ++ V ++
Sbjct: 161 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 220
Query: 77 AGDHYIGNKKIDPK 90
H +G K + K
Sbjct: 221 KKYHNVGLSKCEIK 234
Score = 143 (55.4 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GGL+ + T++D++DYFS++G + + D +GF F+ F + D+V+
Sbjct: 77 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 136
Query: 162 PKQVICGKEVDVKRVK 177
+ + GK +D KR K
Sbjct: 137 KEHKLNGKVIDPKRAK 152
Score = 44 (20.5 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
Identities = 15/52 (28%), Positives = 22/52 (42%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKYREAAAYPRHAPY 348
N GY+ +Y + Y Y Y++ GY YGG Y +Y + Y
Sbjct: 270 NQGYS--NY--WNQGYGSYGYNSQGYG------GYGGYDYTGYNSYYGYGDY 311
Score = 39 (18.8 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 299 GYTAGSYDAYATAYPGY-DYSAMGYAY 324
GY Y Y +Y GY DYS Y
Sbjct: 293 GYGGYDYTGY-NSYYGYGDYSNQQSGY 318
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 324 (119.1 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
Identities = 67/178 (37%), Positives = 99/178 (55%)
Query: 7 GTAGPGR--NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVT 64
G P ND K+F+GGL T + + DYF +YG++ + DP T +SRGF FVT
Sbjct: 17 GPCSPSEVPNDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVT 76
Query: 65 YTTQKAVDDLLAAGDHYIGNKKIDPK-RVTKRVNPLKC----KIFVGGLTTEITEQDVRD 119
++ +VD +L G H + KK+DPK +R +P KIFVGGL+ T +DV+
Sbjct: 77 FSDPNSVDKVLTQGTHELDGKKVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKS 136
Query: 120 YFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVK 177
YF Q+G I + FDK N +GF F++F ++V D+V + I K V+ K+ +
Sbjct: 137 YFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQ 194
Score = 52 (23.4 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 299 GYTAGSYDAYATAYPGYD-YSAMGYAYP 325
G+ A +Y AYA A GY Y + G YP
Sbjct: 228 GFPAAAYAAYA-AGRGYSGYPSFGLPYP 254
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 322 (118.4 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
Identities = 64/164 (39%), Positives = 102/164 (62%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
K+F+GGL +T +K++ +Y S++GEV +IK DP TG+SRGF FV + +VD +L
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 78 GDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFD 135
+H + K IDPKR K P K K+FVGGL+ + +E+ +++YF +G I + P D
Sbjct: 112 KEHKLDGKLIDPKRAKALKGKEPPK-KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMD 170
Query: 136 KSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGK-EVDVKRVK 177
N ++GFCFI++ D+ ++L++ Q+ GK E+ V + K
Sbjct: 171 TKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 214
Score = 177 (67.4 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 33/79 (41%), Positives = 51/79 (64%)
Query: 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAV 71
G+ +K+FVGGL +T E++I +YF +GE+E+I + D T + RGF F+TYT ++ V
Sbjct: 131 GKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPV 190
Query: 72 DDLLAAGDHYIGNKKIDPK 90
LL + H IG+ K + K
Sbjct: 191 KKLLESRYHQIGSGKCEIK 209
Score = 53 (23.7 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 295 EANYG-YTAGSYDAYATAYPGYDYSAMGYA---YPAPATSYGG 333
+ YG Y + D + Y GYDY+ Y Y T Y G
Sbjct: 258 DQGYGNYNSAYGDESYSGYGGYDYTGYNYGSYGYGQGYTDYSG 300
Score = 52 (23.4 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 297 NYGYTAGSYDAYATA-YPGYDYSAMGYA-----YPAPATSYG 332
N Y SY Y Y GY+Y + GY Y ++YG
Sbjct: 265 NSAYGDESYSGYGGYDYTGYNYGSYGYGQGYTDYSGQQSTYG 306
Score = 51 (23.0 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 298 YGYTAGSYDAYATAYPGY-DYSAMGYAYPAPATSYGGGKYR 337
Y YT +Y +Y GY DYS Y S GGG ++
Sbjct: 279 YDYTGYNYGSYGYGQ-GYTDYSGQQSTYGK--ASRGGGNHQ 316
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 322 (118.4 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
Identities = 64/164 (39%), Positives = 102/164 (62%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
K+F+GGL +T +K++ +Y S++GEV +IK DP TG+SRGF FV + +VD +L
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 78 GDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFD 135
+H + K IDPKR K P K K+FVGGL+ + +E+ +++YF +G I + P D
Sbjct: 112 KEHKLDGKLIDPKRAKALKGKEPPK-KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMD 170
Query: 136 KSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGK-EVDVKRVK 177
N ++GFCFI++ D+ ++L++ Q+ GK E+ V + K
Sbjct: 171 TKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 214
Score = 177 (67.4 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 33/79 (41%), Positives = 51/79 (64%)
Query: 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAV 71
G+ +K+FVGGL +T E++I +YF +GE+E+I + D T + RGF F+TYT ++ V
Sbjct: 131 GKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPV 190
Query: 72 DDLLAAGDHYIGNKKIDPK 90
LL + H IG+ K + K
Sbjct: 191 KKLLESRYHQIGSGKCEIK 209
Score = 53 (23.7 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 295 EANYG-YTAGSYDAYATAYPGYDYSAMGYA---YPAPATSYGG 333
+ YG Y + D + Y GYDY+ Y Y T Y G
Sbjct: 258 DQGYGNYNSAYGDESYSGYGGYDYTGYNYGSYGYGQGYTDYSG 300
Score = 52 (23.4 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 297 NYGYTAGSYDAYATA-YPGYDYSAMGYA-----YPAPATSYG 332
N Y SY Y Y GY+Y + GY Y ++YG
Sbjct: 265 NSAYGDESYSGYGGYDYTGYNYGSYGYGQGYTDYSGQQSTYG 306
Score = 51 (23.0 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 298 YGYTAGSYDAYATAYPGY-DYSAMGYAYPAPATSYGGGKYR 337
Y YT +Y +Y GY DYS Y S GGG ++
Sbjct: 279 YDYTGYNYGSYGYGQ-GYTDYSGQQSTYGK--ASRGGGNHQ 316
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 328 (120.5 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 59/154 (38%), Positives = 98/154 (63%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A + +E K+F+GGL +T +K++ DYFS++G+V ++K DP TG+SRGF FV +
Sbjct: 87 AATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKES 146
Query: 69 KAVDDLLAAGDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGS 126
++VD ++ +H + K IDPKR K P+K KIFVGGL+ + E+ +R+YF +G
Sbjct: 147 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK-KIFVGGLSPDTPEEKIREYFGGFGE 205
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK 160
+ + P D N ++GFCFI+F ++ ++++
Sbjct: 206 VESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
Score = 150 (57.9 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGGL +T E++I +YF +GEVESI + D T + RGF F+T+ ++ V ++
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
Query: 77 AGDHYIGNKKIDPK 90
H +G K + K
Sbjct: 240 KKYHNVGLSKCEIK 253
Score = 143 (55.4 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GGL+ + T++D++DYFS++G + + D +GF F+ F + D+V+
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 162 PKQVICGKEVDVKRVK 177
+ + GK +D KR K
Sbjct: 156 KEHKLNGKVIDPKRAK 171
Score = 44 (20.5 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 15/52 (28%), Positives = 22/52 (42%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKYREAAAYPRHAPY 348
N GY+ +Y + Y Y Y++ GY YGG Y +Y + Y
Sbjct: 289 NQGYS--NY--WNQGYGSYGYNSQGYG------GYGGYDYTGYNSYYGYGDY 330
Score = 39 (18.8 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 299 GYTAGSYDAYATAYPGY-DYSAMGYAY 324
GY Y Y +Y GY DYS Y
Sbjct: 312 GYGGYDYTGY-NSYYGYGDYSNQQSGY 337
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 328 (120.5 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 59/154 (38%), Positives = 98/154 (63%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A + +E K+F+GGL +T +K++ DYFS++G+V ++K DP TG+SRGF FV +
Sbjct: 87 AATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKES 146
Query: 69 KAVDDLLAAGDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGS 126
++VD ++ +H + K IDPKR K P+K KIFVGGL+ + E+ +R+YF +G
Sbjct: 147 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK-KIFVGGLSPDTPEEKIREYFGGFGE 205
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK 160
+ + P D N ++GFCFI+F ++ ++++
Sbjct: 206 VESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
Score = 150 (57.9 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGGL +T E++I +YF +GEVESI + D T + RGF F+T+ ++ V ++
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
Query: 77 AGDHYIGNKKIDPK 90
H +G K + K
Sbjct: 240 KKYHNVGLSKCEIK 253
Score = 143 (55.4 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GGL+ + T++D++DYFS++G + + D +GF F+ F + D+V+
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 162 PKQVICGKEVDVKRVK 177
+ + GK +D KR K
Sbjct: 156 KEHKLNGKVIDPKRAK 171
Score = 44 (20.5 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 15/52 (28%), Positives = 22/52 (42%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKYREAAAYPRHAPY 348
N GY+ +Y + Y Y Y++ GY YGG Y +Y + Y
Sbjct: 289 NQGYS--NY--WNQGYGSYGYNSQGYG------GYGGYDYTGYNSYYGYGDY 330
Score = 39 (18.8 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 299 GYTAGSYDAYATAYPGY-DYSAMGYAY 324
GY Y Y +Y GY DYS Y
Sbjct: 312 GYGGYDYTGY-NSYYGYGDYSNQQSGY 337
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 315 (115.9 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
Identities = 66/188 (35%), Positives = 104/188 (55%)
Query: 6 NGTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTY 65
+G+ ++D K+F+GGL T + DYF ++GE+ + DP T +SRGF F+T+
Sbjct: 10 SGSLNDSQHDPGKMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITF 69
Query: 66 TTQKAVDDLLAAGDHYIGNKKIDPK-RVTKRVNPLKC----KIFVGGLTTEITEQDVRDY 120
+VD +LA H + +K IDPK +R P KIFVGGL+ +DV+ Y
Sbjct: 70 ADVSSVDKVLAQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSASTVVEDVKQY 129
Query: 121 FSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK------NPKQVICGKEVDVK 174
F Q+G + + FDK+ N +GF F++F+++++ ++V + N K V C K+ K
Sbjct: 130 FEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDIVEKVCEIHFHEINNKMVEC-KKAQPK 188
Query: 175 RVKFNPET 182
V F P T
Sbjct: 189 EVMFPPGT 196
Score = 50 (22.7 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMG-YAYPAPATSYGGG 334
GYT G +Y+ +PG+ +A G A A A + G G
Sbjct: 229 GYT-GFSPSYSYQFPGFPATAYGPVAAAAVAAARGSG 264
Score = 49 (22.3 bits), Expect = 8.8e-32, Sum P(2) = 8.8e-32
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 308 YATAYPGYDYSAMGYAYPA-PATSYG 332
Y Y G+ S Y +P PAT+YG
Sbjct: 226 YGRGYTGFSPS-YSYQFPGFPATAYG 250
Score = 38 (18.4 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMG 321
+YG+ +G D A DY+ +G
Sbjct: 267 DYGFYSGPGDQRAAPCSFADYATLG 291
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 64/167 (38%), Positives = 104/167 (62%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A D K+FVGGL +T +K++ DYF+++GEV +IK DP TG+SRGF F+ +
Sbjct: 80 ASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDS 139
Query: 69 KAVDDLLAAGDHYIGNKKIDPKR-VTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSI 127
+V+ +L +H + + IDPK+ + + +P+K KIFVGGL E TE+ +R+YF Q+G I
Sbjct: 140 SSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVK-KIFVGGLNPEATEEKIREYFGQFGEI 198
Query: 128 TEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVK 174
+ P D N ++GF FI+F +++ +VL+ + G + ++K
Sbjct: 199 EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIK 245
Score = 132 (51.5 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 27/99 (27%), Positives = 54/99 (54%)
Query: 78 GDHYIGNKKIDPKRVTKRVNPLKC-KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDK 136
G GN+ + ++ N K+FVGGL+ + +++D++DYF+++G + + D
Sbjct: 64 GSRPSGNQNGEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDP 123
Query: 137 SKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ +GF FI F D + ++VL + + G+ +D K+
Sbjct: 124 NTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKK 162
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 64/167 (38%), Positives = 104/167 (62%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A D K+FVGGL +T +K++ DYF+++GEV +IK DP TG+SRGF F+ +
Sbjct: 67 ASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDS 126
Query: 69 KAVDDLLAAGDHYIGNKKIDPKR-VTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSI 127
+V+ +L +H + + IDPK+ + + +P+K KIFVGGL E TE+ +R+YF Q+G I
Sbjct: 127 SSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVK-KIFVGGLNPEATEEKIREYFGQFGEI 185
Query: 128 TEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVK 174
+ P D N ++GF FI+F +++ +VL+ + G + ++K
Sbjct: 186 EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIK 232
Score = 131 (51.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 23/74 (31%), Positives = 46/74 (62%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+FVGGL+ + +++D++DYF+++G + + D + +GF FI F D + ++VL
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 162 PKQVICGKEVDVKR 175
+ + G+ +D K+
Sbjct: 136 KEHRLDGRVIDPKK 149
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 64/167 (38%), Positives = 104/167 (62%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A D K+FVGGL +T +K++ DYF+++GEV +IK DP TG+SRGF F+ +
Sbjct: 67 ASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDS 126
Query: 69 KAVDDLLAAGDHYIGNKKIDPKR-VTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSI 127
+V+ +L +H + + IDPK+ + + +P+K KIFVGGL E TE+ +R+YF Q+G I
Sbjct: 127 SSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVK-KIFVGGLNPEATEEKIREYFGQFGEI 185
Query: 128 TEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVK 174
+ P D N ++GF FI+F +++ +VL+ + G + ++K
Sbjct: 186 EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIK 232
Score = 131 (51.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 23/74 (31%), Positives = 46/74 (62%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+FVGGL+ + +++D++DYF+++G + + D + +GF FI F D + ++VL
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 162 PKQVICGKEVDVKR 175
+ + G+ +D K+
Sbjct: 136 KEHRLDGRVIDPKK 149
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 302 (111.4 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
Identities = 65/175 (37%), Positives = 97/175 (55%)
Query: 19 LFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG 78
+F+GGL T + DYFS++GE+ + DP T +SRGF FVT+ +VD +L
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 79 DHYIGNKKIDPK-RVTKRVNPLKC----KIFVGGLTTEITEQDVRDYFSQYGSITEFQQP 133
H + +K IDPK +R P KIFVGGL+ +DV+ YF Q+G + +
Sbjct: 61 HHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLM 120
Query: 134 FDKSKNMKKGFCFISFDDQNVADQVLK------NPKQVICGKEVDVKRVKFNPET 182
FDK+ N +GF F++F++++V ++V + N K V C K+ K V F P T
Sbjct: 121 FDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVEC-KKAQPKEVMFPPGT 174
Score = 148 (57.2 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGGL NT +++ YF Q+G+VE + D T + RGF FVT+ + V+ +
Sbjct: 88 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 147
Query: 77 AGDHYIGNKKIDPKR 91
H I NK ++ K+
Sbjct: 148 IHFHEINNKMVECKK 162
Score = 56 (24.8 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 308 YATAYPGYDYSAMGYAYPA-PATSYG 332
Y YPG+ S GY +P PA +YG
Sbjct: 204 YGRGYPGFAPS-YGYQFPGFPAAAYG 228
Score = 42 (19.8 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 14/50 (28%), Positives = 20/50 (40%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKYREAAAYPRH-AP 347
GY G +Y +PG+ +A G A + G +A P AP
Sbjct: 207 GYP-GFAPSYGYQFPGFPAAAYGPVAAAAVAAARGSVLNSYSAQPNFGAP 255
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 312 (114.9 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
Identities = 65/179 (36%), Positives = 105/179 (58%)
Query: 4 RANGTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFV 63
++N ++ +D K+F+GGL T ++ + DYF ++GEV+ + DP T +SRGF FV
Sbjct: 7 QSNLSSSDSPHDPCKMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFV 66
Query: 64 TYTTQKAVDDLLAAGDHYIGNKKIDPK-RVTKRVNPLKC----KIFVGGLTTEITEQDVR 118
T+ Q VD +LA H + +K IDPK +R P KIFVGGL+ T +DV+
Sbjct: 67 TFVDQAGVDKVLAQTRHELDSKTIDPKVAFPRRAQPKLVTRTKKIFVGGLSVNTTIEDVK 126
Query: 119 DYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVK 177
YF Q+G + + FDK+ N +GF F++F++++V ++V + I K V+ K+ +
Sbjct: 127 QYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 185
Score = 44 (20.5 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 242 GYDYSAM--GYAYPAPAVQTMDTPLVVMMHMLQHTLV 276
G Y+++ GY Y P TPL+ H + T +
Sbjct: 229 GRSYTSLTPGYTYQFPEFHLERTPLLTSPHPPELTAI 265
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 64/167 (38%), Positives = 103/167 (61%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A D K+FVGGL +T +K++ DYF+++GEV +IK DP TG+SRGF F+ +
Sbjct: 62 ASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDA 121
Query: 69 KAVDDLLAAGDHYIGNKKIDPKR-VTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSI 127
+V+ +L +H + + IDPK+ + + +P+K KIFVGGL E TE+ +R+YF ++G I
Sbjct: 122 TSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVK-KIFVGGLNPEATEEKIREYFGEFGEI 180
Query: 128 TEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVK 174
+ P D N ++GF FI+F ++ +VL+ I G + ++K
Sbjct: 181 EAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIK 227
Score = 129 (50.5 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 23/74 (31%), Positives = 45/74 (60%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+FVGGL+ + +++D++DYF+++G + + D + +GF FI F D ++VL
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQ 130
Query: 162 PKQVICGKEVDVKR 175
+ + G+ +D K+
Sbjct: 131 KEHRLDGRVIDPKK 144
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 316 (116.3 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
Identities = 66/177 (37%), Positives = 102/177 (57%)
Query: 7 GTAGPGR-NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTY 65
G A P +D K+F+GGL T ++ + +YF Q+GEV+ + DP T +SRGF FVT+
Sbjct: 9 GLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68
Query: 66 TTQKAVDDLLAAGDHYIGNKKIDPK-RVTKRVNPLKC----KIFVGGLTTEITEQDVRDY 120
Q VD +LA H + +K IDPK +R P KIFVGGL+ T +DV+ Y
Sbjct: 69 MDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQY 128
Query: 121 FSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVK 177
F Q+G + + FDK+ N +GF F++F+ +++ ++V + I K V+ K+ +
Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 185
Score = 38 (18.4 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 243 YDYSAMGYAYPAPAVQTMDTPL 264
Y A GY Y P + TPL
Sbjct: 232 YTGLAPGYTYQFPEFRVERTPL 253
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 315 (115.9 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 66/177 (37%), Positives = 102/177 (57%)
Query: 7 GTAGPGR-NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTY 65
G A P +D K+F+GGL T ++ + +YF Q+GEV+ + DP T +SRGF FVT+
Sbjct: 9 GLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68
Query: 66 TTQKAVDDLLAAGDHYIGNKKIDPK-RVTKRVNPLKC----KIFVGGLTTEITEQDVRDY 120
Q VD +LA H + +K IDPK +R P KIFVGGL+ T +DV+ Y
Sbjct: 69 MDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHY 128
Query: 121 FSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVK 177
F Q+G + + FDK+ N +GF F++F+ +++ ++V + I K V+ K+ +
Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 185
Score = 38 (18.4 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 243 YDYSAMGYAYPAPAVQTMDTPL 264
Y A GY Y P + TPL
Sbjct: 232 YTGLAPGYTYQFPEFRVERTPL 253
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 315 (115.9 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 66/177 (37%), Positives = 102/177 (57%)
Query: 7 GTAGPGR-NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTY 65
G A P +D K+F+GGL T ++ + +YF Q+GEV+ + DP T +SRGF FVT+
Sbjct: 9 GLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68
Query: 66 TTQKAVDDLLAAGDHYIGNKKIDPK-RVTKRVNPLKC----KIFVGGLTTEITEQDVRDY 120
Q VD +LA H + +K IDPK +R P KIFVGGL+ T +DV+ Y
Sbjct: 69 MDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHY 128
Query: 121 FSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVK 177
F Q+G + + FDK+ N +GF F++F+ +++ ++V + I K V+ K+ +
Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 185
Score = 38 (18.4 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 243 YDYSAMGYAYPAPAVQTMDTPL 264
Y A GY Y P + TPL
Sbjct: 232 YTGLAPGYTYQFPEFRVERTPL 253
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 290 (107.1 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 60/184 (32%), Positives = 105/184 (57%)
Query: 2 SYRANGTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFA 61
++++ A PG K+F+GGLH++T N +F +YGE+ I D +TGQ RGF
Sbjct: 9 NFQSGDGASPG-----KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFG 63
Query: 62 FVTYTTQKAVDDLLAAGDHYIGNKKIDPKR-VTK-----RVNPLKCK-IFVGGLTTEITE 114
F+T+ VD ++ H I K+++ KR + K + +K K IFVGG+ + +TE
Sbjct: 64 FITFADPSVVDKVIE-DTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTE 122
Query: 115 QDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQV-ICGKEVDV 173
+++D+F++YG++ E Q D N +GF F+ FD + V D++L + + +V++
Sbjct: 123 DELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEI 182
Query: 174 KRVK 177
K+ +
Sbjct: 183 KKAE 186
Score = 63 (27.2 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 304 SYDAYATAYPGYDYSAMGYAYP-APATSYGGGKYREAAAY 342
SY +Y Y G+D GY +P P S+GG R A Y
Sbjct: 210 SYASYGGPYGGFDG---GYGHPPGPIRSHGGPASRYAGGY 246
Score = 47 (21.6 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 303 GSYDAYATAYPGYDYSAMGYAYPAPATSYGGGK---YREAA--AYP-RHAPY 348
G YA Y GY ++G + +YGGG YR Y R PY
Sbjct: 237 GPASRYAGGY-GYGRGSVGPEFGGGYNNYGGGSLGGYRNEPPLGYSSRFGPY 287
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 63/167 (37%), Positives = 103/167 (61%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A D K+FVGGL +T +K++ DYF+++GEV +IK DP TG+SRGF F+ +
Sbjct: 62 ASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDA 121
Query: 69 KAVDDLLAAGDHYIGNKKIDPKR-VTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSI 127
+V+ +L +H + + IDPK+ + + +P+K KIFVGGL E TE+ +R+YF ++G I
Sbjct: 122 ASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVK-KIFVGGLNPEATEEKIREYFGEFGEI 180
Query: 128 TEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVK 174
+ P D N ++GF FI+F ++ +VL+ + G + ++K
Sbjct: 181 EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIK 227
Score = 127 (49.8 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 23/74 (31%), Positives = 45/74 (60%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+FVGGL+ + +++D++DYF+++G + + D + +GF FI F D ++VL
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 162 PKQVICGKEVDVKR 175
+ + G+ +D K+
Sbjct: 131 KEHRLDGRVIDPKK 144
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 63/167 (37%), Positives = 103/167 (61%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A D K+FVGGL +T +K++ DYF+++GEV +IK DP TG+SRGF F+ +
Sbjct: 62 ASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDA 121
Query: 69 KAVDDLLAAGDHYIGNKKIDPKR-VTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSI 127
+V+ +L +H + + IDPK+ + + +P+K KIFVGGL E TE+ +R+YF ++G I
Sbjct: 122 ASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVK-KIFVGGLNPEATEEKIREYFGEFGEI 180
Query: 128 TEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVK 174
+ P D N ++GF FI+F ++ +VL+ + G + ++K
Sbjct: 181 EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIK 227
Score = 127 (49.8 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 23/74 (31%), Positives = 45/74 (60%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+FVGGL+ + +++D++DYF+++G + + D + +GF FI F D ++VL
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 162 PKQVICGKEVDVKR 175
+ + G+ +D K+
Sbjct: 131 KEHRLDGRVIDPKK 144
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 292 (107.8 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
Identities = 62/171 (36%), Positives = 107/171 (62%)
Query: 15 DER-KLFVGGLHRNTGEKEINDYFSQYGEV-ESISIKNDPYTGQSRGFAFVTYTTQKAVD 72
DER KLFVGGL T ++ ++ YF ++G++ + + +KN+ +G+SRGF FVT+ V+
Sbjct: 4 DERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNE-SGRSRGFGFVTFADPTNVN 62
Query: 73 DLLAAGDHYIGNKKIDPKRVTKRV--NPLK---CKIFVGGLTTEITEQDVRDYFSQYGSI 127
+L G H + + IDPK R P K K+F+GGL + +TE D+R +F++YG +
Sbjct: 63 HVLQNGPHTLDGRTIDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKV 122
Query: 128 TEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQV-ICGKEVDVKRVK 177
TE +D+ K +GF F+SF++++ + V N + + + GK+V++K+ +
Sbjct: 123 TEVVIMYDQEKKKSRGFGFLSFEEESSVEHVT-NERYINLNGKQVEIKKAE 172
Score = 118 (46.6 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 25/87 (28%), Positives = 48/87 (55%)
Query: 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKA 70
P + K+F+GGL N E ++ +F++YG+V + I D +SRGF F+++ + +
Sbjct: 90 PKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESS 149
Query: 71 VDDLLAAGDHYIG--NKKIDPKRVTKR 95
V+ + + YI K+++ K+ R
Sbjct: 150 VEHV--TNERYINLNGKQVEIKKAEPR 174
Score = 55 (24.4 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 297 NYGYTAGS-YDAYATAYPGYDYSAMGYAYPAPATSYGGG 334
N +GS YD Y GYDY Y A++YG G
Sbjct: 363 NSASKSGSEYD-YGGYGSGYDYDYSNYVKQEGASNYGAG 400
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 60/154 (38%), Positives = 98/154 (63%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A + +E K+F+GGL +T +K++ DYFS++GEV ++K DP TG+SRGF FV +
Sbjct: 89 AATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 69 KAVDDLLAAGDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGS 126
++VD ++ +H + K IDPKR K P+K KIFVGGL+ + E+ +R+YF +G
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK-KIFVGGLSPDTPEEKIREYFGGFGE 207
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK 160
+ + P D N ++GFCFI+F ++ ++++
Sbjct: 208 VESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Score = 150 (57.9 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGGL +T E++I +YF +GEVESI + D T + RGF F+T+ ++ V ++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 77 AGDHYIGNKKIDPK 90
H +G K + K
Sbjct: 242 KKYHNVGLSKCEIK 255
Score = 143 (55.4 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GGL+ + T++D++DYFS++G + + D +GF F+ F + D+V+
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 162 PKQVICGKEVDVKRVK 177
+ + GK +D KR K
Sbjct: 158 KEHKLNGKVIDPKRAK 173
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 61/158 (38%), Positives = 102/158 (64%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
K+FVGGL +T +K++ DYF+++GEV +IK DP TG+SRGF F+ + +V+ +L
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 78 GDHYIGNKKIDPKR-VTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDK 136
+H + + IDPK+ + + +P+K KIFVGGL E TE+ +R+YF ++G I + P D
Sbjct: 61 KEHRLDGRLIDPKKAMAMKKDPVK-KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDP 119
Query: 137 SKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVK 174
N ++GF FI+F +++ +VL+ + G + ++K
Sbjct: 120 KTNKRRGFVFITFKEEDPVKKVLEKKFHNVSGSKCEIK 157
Score = 151 (58.2 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGGL+ E++I +YF ++GE+E+I + DP T + RGF F+T+ + V +L
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLE 143
Query: 77 AGDHYIGNKKIDPK 90
H + K + K
Sbjct: 144 KKFHNVSGSKCEIK 157
Score = 131 (51.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 23/74 (31%), Positives = 47/74 (63%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+FVGGL+ + +++D++DYF+++G +T+ D + +GF FI F + ++VL+
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 162 PKQVICGKEVDVKR 175
+ + G+ +D K+
Sbjct: 61 KEHRLDGRLIDPKK 74
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 308 (113.5 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 62/165 (37%), Positives = 97/165 (58%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
K+F+GGL T ++ + +YF Q+GEV+ + DP T +SRGF FVT+ Q VD +LA
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 60
Query: 78 GDHYIGNKKIDPK-RVTKRVNPLKC----KIFVGGLTTEITEQDVRDYFSQYGSITEFQQ 132
H + +K IDPK +R P KIFVGGL+ T +DV+ YF Q+G + +
Sbjct: 61 SRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAML 120
Query: 133 PFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVK 177
FDK+ N +GF F++F+ +++ ++V + I K V+ K+ +
Sbjct: 121 MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 165
Score = 144 (55.7 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGGL NT +++ YF Q+G+V+ + D T + RGF FVT+ ++ V+ +
Sbjct: 89 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 148
Query: 77 AGDHYIGNKKIDPKR 91
H I NK ++ K+
Sbjct: 149 IHFHEINNKMVECKK 163
Score = 38 (18.4 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 243 YDYSAMGYAYPAPAVQTMDTPL 264
Y A GY Y P + TPL
Sbjct: 212 YTGLAPGYTYQFPEFRVERTPL 233
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 308 (113.5 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 65/177 (36%), Positives = 101/177 (57%)
Query: 7 GTAGPGR-NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTY 65
G A P +D K+F+GGL T ++ + +YF Q+GEV+ + DP T +SRGF FVT+
Sbjct: 9 GLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68
Query: 66 TTQKAVDDLLAAGDHYIGNKKIDPK-RVTKRVNPLKC----KIFVGGLTTEITEQDVRDY 120
Q VD +LA H + +K IDPK +R P KIFVGGL+ T +DV+ Y
Sbjct: 69 MDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQY 128
Query: 121 FSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVK 177
F Q+ + + FDK+ N +GF F++F+ +++ ++V + I K V+ K+ +
Sbjct: 129 FEQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 185
Score = 38 (18.4 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 243 YDYSAMGYAYPAPAVQTMDTPL 264
Y A GY Y P + TPL
Sbjct: 232 YTGLAPGYTYQFPEFRVERTPL 253
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 334 (122.6 bits), Expect = 9.5e-30, P = 9.5e-30
Identities = 63/169 (37%), Positives = 103/169 (60%)
Query: 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
G G ++ K+F+GGL+ T ++ + +YFSQ+GEV+ ++ D TG+SRGF F+T+ K
Sbjct: 103 GTGIKEDGKMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPK 162
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKRVNPLKC-KIFVGGLTTEITEQDVRDYFSQYGSIT 128
V+ ++ +HY+ K IDPKR R K KIFVGG++ E TEQD + +F Q+G +
Sbjct: 163 TVNTVMVK-EHYLDGKIIDPKRAIPRDEQEKTSKIFVGGVSQEATEQDFKQFFMQFGRVI 221
Query: 129 EFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVK 177
+ DK +GF F++FD + + L P +++ GK ++VK+ +
Sbjct: 222 DATLMIDKDTGRPRGFGFVTFDSEAAVEAALSRPLEIL-GKTIEVKKAQ 269
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 59/154 (38%), Positives = 98/154 (63%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A + +E K+F+GGL +T +K++ DYFS++G+V ++K DP TG+SRGF FV +
Sbjct: 87 AATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKES 146
Query: 69 KAVDDLLAAGDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGS 126
++VD ++ +H + K IDPKR K P+K KIFVGGL+ + E+ +R+YF +G
Sbjct: 147 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK-KIFVGGLSPDTPEEKIREYFGGFGE 205
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK 160
+ + P D N ++GFCFI+F ++ ++++
Sbjct: 206 VESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
Score = 150 (57.9 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGGL +T E++I +YF +GEVESI + D T + RGF F+T+ ++ V ++
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
Query: 77 AGDHYIGNKKIDPK 90
H +G K + K
Sbjct: 240 KKYHNVGLSKCEIK 253
Score = 143 (55.4 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GGL+ + T++D++DYFS++G + + D +GF F+ F + D+V+
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 162 PKQVICGKEVDVKRVK 177
+ + GK +D KR K
Sbjct: 156 KEHKLNGKVIDPKRAK 171
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 293 (108.2 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 61/182 (33%), Positives = 98/182 (53%)
Query: 4 RANGTAG--PGRNDE-RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGF 60
R G G P ++ RKLF+GGL T + + ++F ++G + + DP T +SRGF
Sbjct: 19 RRRGAQGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGF 78
Query: 61 AFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEIT 113
FVTY+ + VD + A H + + ++PKR R + +K KIFVGG+ +
Sbjct: 79 GFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTE 138
Query: 114 EQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDV 173
E ++RDYF +YG I + D+ K+GF F++FDD + D+++ I G +V
Sbjct: 139 EYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEV 198
Query: 174 KR 175
K+
Sbjct: 199 KK 200
Score = 160 (61.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF +YG++E+I + D +G+ RGFAFVT+
Sbjct: 119 PGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHD 178
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
VD ++ H I + K+ +
Sbjct: 179 TVDKIVVQKYHTINGHNCEVKKALSK 204
Score = 50 (22.7 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 13/44 (29%), Positives = 15/44 (34%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKYREAAAY 342
GY G Y GY GY ++GGG Y Y
Sbjct: 288 GYGGGGPGGYGNQGGGYGGGGGGYDGYNEGGNFGGGNYGGGGNY 331
Score = 41 (19.5 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 13/46 (28%), Positives = 17/46 (36%)
Query: 298 YGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGG-KYREAAAY 342
YG G Y Y GY+ + +YGGG Y + Y
Sbjct: 297 YGNQGGGYGGGGGGYDGYNEGG-NFG----GGNYGGGGNYNDFGNY 337
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 64/172 (37%), Positives = 102/172 (59%)
Query: 4 RANGTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFV 63
+ NG + G N+++K+FVGG+ ++++ +F+QYGEV +K D G+SRGFAFV
Sbjct: 17 KENGHSTKG-NEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFV 75
Query: 64 TYTTQKAVDDLLAAGDHYIGNKKIDPKRVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQ 123
+TT + LAA + I K ++ K R N K+FVGGL ++ +EQD+R +F Q
Sbjct: 76 EFTTGEGCKLALAAREQTIKGKSVEVKPAKSRENK---KVFVGGLPSDYSEQDLRSHFEQ 132
Query: 124 YGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+G + + + PFDK ++ F FI F+++ AD+ KQ +E DVK+
Sbjct: 133 FGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECDVKK 184
Score = 146 (56.5 bits), Expect = 7.6e-08, P = 7.6e-08
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
KIFVGG++ E+ +D+ +F+QYG + + Q +D++ +GF F+ F L
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAA 89
Query: 162 PKQVICGKEVDVKRVK 177
+Q I GK V+VK K
Sbjct: 90 REQTIKGKSVEVKPAK 105
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 62/167 (37%), Positives = 102/167 (61%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A D K+FVGGL +T +K++ DYF+++GEV +IK P TG+S+GF F+ +
Sbjct: 56 ASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDA 115
Query: 69 KAVDDLLAAGDHYIGNKKIDPKR-VTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSI 127
+V+ +L +H + + IDPK+ + + +P+K KIFVGGL E TE+ +R+YF ++G I
Sbjct: 116 ASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVK-KIFVGGLNPEATEEKIREYFGEFGEI 174
Query: 128 TEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVK 174
+ P D N ++GF FI+F ++ +VL+ I G + ++K
Sbjct: 175 EAIELPMDPKTNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIK 221
Score = 121 (47.7 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 23/74 (31%), Positives = 44/74 (59%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+FVGGL+ + +++D++DYF+++G + + + KGF FI F D ++VL
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVEKVLDQ 124
Query: 162 PKQVICGKEVDVKR 175
+ + G+ +D K+
Sbjct: 125 KEHRLDGRVIDPKK 138
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 288 (106.4 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 56/166 (33%), Positives = 93/166 (56%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T + + ++F ++G + + DP T +SRGF FVTY+ + VD ++
Sbjct: 33 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 92
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + +K KIFVGG+ + E ++R+YF +YG I
Sbjct: 93 ARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIET 152
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ I G +VK+
Sbjct: 153 IEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKK 198
Score = 156 (60.0 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 29/86 (33%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + +YF +YG++E+I + D +G+ RGFAFVT+
Sbjct: 117 PGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHD 176
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
VD ++ H I + K+ +
Sbjct: 177 TVDKIVVQKYHTINGHNCEVKKALSK 202
Score = 51 (23.0 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 13/44 (29%), Positives = 16/44 (36%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKYREAAAY 342
GY G Y GY GY ++GGG Y + Y
Sbjct: 287 GYGGGGGPGYGNPGGGYGGGGGGYDGYNEGGNFGGGNYGGSGNY 330
Score = 41 (19.5 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
Identities = 13/46 (28%), Positives = 17/46 (36%)
Query: 298 YGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGG-GKYREAAAY 342
YG G Y Y GY+ + +YGG G Y + Y
Sbjct: 296 YGNPGGGYGGGGGGYDGYNEGG-NFG----GGNYGGSGNYNDFGNY 336
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 58/145 (40%), Positives = 94/145 (64%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
K+F+GGL +T +K++ DYFS++GEV ++K DP TG+SRGF FV + ++VD ++
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 78 GDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFD 135
+H + K IDPKR K P+K KIFVGGL+ + E+ +R+YF +G + + P D
Sbjct: 62 KEHKLNGKVIDPKRAKAMKTKEPVK-KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 120
Query: 136 KSKNMKKGFCFISFDDQNVADQVLK 160
N ++GFCFI+F ++ ++++
Sbjct: 121 NKTNKRRGFCFITFKEEEPVKKIME 145
Score = 150 (57.9 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGGL +T E++I +YF +GEVESI + D T + RGF F+T+ ++ V ++
Sbjct: 86 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 145
Query: 77 AGDHYIGNKKIDPK 90
H +G K + K
Sbjct: 146 KKYHNVGLSKCEIK 159
Score = 143 (55.4 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GGL+ + T++D++DYFS++G + + D +GF F+ F + D+V+
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 162 PKQVICGKEVDVKRVK 177
+ + GK +D KR K
Sbjct: 62 KEHKLNGKVIDPKRAK 77
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 285 (105.4 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 57/166 (34%), Positives = 92/166 (55%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T E+ + +Y+ Q+G++ + DP + +SRGF FVT+++ VD +A
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H I + ++PKR R K K+FVGG+ + E +RDYF +YG I
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 140
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ I G +V++
Sbjct: 141 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNAEVRK 186
Score = 156 (60.0 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 30/86 (34%), Positives = 48/86 (55%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +KLFVGG+ +T E + DYF +YG++++I I D +G+ RGF FVT+
Sbjct: 105 PGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 164
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
VD ++ H I + ++ R
Sbjct: 165 PVDKIVLQKHHTINGHNAEVRKALSR 190
Score = 124 (48.7 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GGL+ E TE+ +R+Y+ Q+G +T+ D + +GF F++F D +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 162 PKQVICGKEVDVKRVKFNPET 182
I G+ V+ KR E+
Sbjct: 82 RPHSIDGRVVEPKRAVAREES 102
Score = 53 (23.7 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 14/38 (36%), Positives = 15/38 (39%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKY 336
GY G Y PGY GY +YGGG Y
Sbjct: 261 GY-GGGRGGYGGGGPGYGNQGGGYG--GGYDNYGGGNY 295
Score = 42 (19.8 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
Identities = 12/38 (31%), Positives = 12/38 (31%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKY 336
GY G PGY GY P GG Y
Sbjct: 246 GYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGY 283
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 285 (105.4 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 57/166 (34%), Positives = 93/166 (56%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T E+ + +Y+ Q+G++ + DP + +SRGF FVT+++ VD +A
Sbjct: 9 RKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H I + ++PKR R K K+FVGG+ + E +RDYF++YG I
Sbjct: 69 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDT 128
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ I G +V++
Sbjct: 129 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRK 174
Score = 155 (59.6 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +KLFVGG+ +T E + DYF++YG++++I I D +G+ RGF FVT+
Sbjct: 93 PGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 152
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
VD ++ H I + ++ R
Sbjct: 153 PVDKIVLQKYHTINGHNAEVRKALSR 178
Score = 121 (47.7 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 24/81 (29%), Positives = 43/81 (53%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GGL+ + TE+ +R+Y+ Q+G +T+ D + +GF F++F D +
Sbjct: 10 KLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 162 PKQVICGKEVDVKRVKFNPET 182
I G+ V+ KR E+
Sbjct: 70 RPHSIDGRVVEPKRAVAREES 90
Score = 53 (23.7 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 14/38 (36%), Positives = 15/38 (39%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKY 336
GY G Y PGY GY +YGGG Y
Sbjct: 249 GY-GGGRGGYGGGGPGYGNQGGGYG--GGYDNYGGGNY 283
Score = 42 (19.8 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
Identities = 12/38 (31%), Positives = 12/38 (31%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKY 336
GY G PGY GY P GG Y
Sbjct: 234 GYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGY 271
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 291 (107.5 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 57/166 (34%), Positives = 92/166 (55%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T + + ++F ++G + + DP T +SRGF FVTY+ + VD +
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + +K KIFVGG+ + E ++RDYF +YG I
Sbjct: 73 ARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIET 132
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ I G +VK+
Sbjct: 133 IEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKK 178
Score = 160 (61.4 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF +YG++E+I + D +G+ RGFAFVT+
Sbjct: 97 PGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHD 156
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
VD ++ H I + K+ +
Sbjct: 157 TVDKIVVQKYHTINGHNCEVKKALSK 182
Score = 46 (21.3 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 17/55 (30%), Positives = 20/55 (36%)
Query: 297 NYGYTAGSYD--AYATAYPGYDYSAMGYA-----YPA--PATSYGGGKYREAAAY 342
NYG +GS Y PGY GY Y ++GGG Y Y
Sbjct: 254 NYGGGSGSSSRGGYGGGGPGYGNQGGGYGGGGGGYDGYNEGGNFGGGNYGGGGNY 308
Score = 38 (18.4 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 298 YGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGG 334
+G G+Y + + Y G Y YGGG
Sbjct: 248 FGGDGGNYGGGSGSSSRGGYGGGGPGYGNQGGGYGGG 284
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 284 (105.0 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 57/166 (34%), Positives = 92/166 (55%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T E+ + +Y+ Q+G++ + DP + +SRGF FVT+++ VD +A
Sbjct: 17 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 76
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H I + ++PKR R K K+FVGG+ + E +RDYF +YG I
Sbjct: 77 ARPHTIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 136
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ I G +V++
Sbjct: 137 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRK 182
Score = 154 (59.3 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 30/86 (34%), Positives = 48/86 (55%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +KLFVGG+ +T E + DYF +YG++++I I D +G+ RGF FVT+
Sbjct: 101 PGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 160
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
VD ++ H I + ++ R
Sbjct: 161 PVDKIVLQKYHTINGHNAEVRKALSR 186
Score = 126 (49.4 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GGL+ E TE+ +R+Y+ Q+G +T+ D + +GF F++F D +
Sbjct: 18 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 77
Query: 162 PKQVICGKEVDVKRVKFNPET 182
I G+ V+ KR E+
Sbjct: 78 RPHTIDGRVVEPKRAVAREES 98
Score = 53 (23.7 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 14/38 (36%), Positives = 15/38 (39%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKY 336
GY G Y PGY GY +YGGG Y
Sbjct: 257 GY-GGGRGGYGGGGPGYGNQGGGYG--GGYDNYGGGNY 291
Score = 42 (19.8 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 12/38 (31%), Positives = 12/38 (31%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKY 336
GY G PGY GY P GG Y
Sbjct: 242 GYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGY 279
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 284 (105.0 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 57/166 (34%), Positives = 92/166 (55%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T E+ + +Y+ Q+G++ + DP + +SRGF FVT+++ VD +A
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H I + ++PKR R K K+FVGG+ + E +RDYF +YG I
Sbjct: 69 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 128
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ I G +V++
Sbjct: 129 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRK 174
Score = 154 (59.3 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 30/86 (34%), Positives = 48/86 (55%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +KLFVGG+ +T E + DYF +YG++++I I D +G+ RGF FVT+
Sbjct: 93 PGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 152
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
VD ++ H I + ++ R
Sbjct: 153 PVDKIVLQKYHTINGHNAEVRKALSR 178
Score = 124 (48.7 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GGL+ E TE+ +R+Y+ Q+G +T+ D + +GF F++F D +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 162 PKQVICGKEVDVKRVKFNPET 182
I G+ V+ KR E+
Sbjct: 70 RPHSIDGRVVEPKRAVAREES 90
Score = 53 (23.7 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 14/38 (36%), Positives = 15/38 (39%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKY 336
GY G Y PGY GY +YGGG Y
Sbjct: 249 GY-GGGRGGYGGGGPGYGNQGGGYG--GGYDNYGGGNY 283
Score = 42 (19.8 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 12/38 (31%), Positives = 12/38 (31%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKY 336
GY G PGY GY P GG Y
Sbjct: 234 GYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGY 271
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 284 (105.0 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 57/166 (34%), Positives = 92/166 (55%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T E+ + +Y+ Q+G++ + DP + +SRGF FVT+++ VD +A
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H I + ++PKR R K K+FVGG+ + E +RDYF +YG I
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 140
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ I G +V++
Sbjct: 141 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRK 186
Score = 154 (59.3 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 30/86 (34%), Positives = 48/86 (55%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +KLFVGG+ +T E + DYF +YG++++I I D +G+ RGF FVT+
Sbjct: 105 PGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 164
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
VD ++ H I + ++ R
Sbjct: 165 PVDKIVLQKYHTINGHNAEVRKALSR 190
Score = 124 (48.7 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GGL+ E TE+ +R+Y+ Q+G +T+ D + +GF F++F D +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 162 PKQVICGKEVDVKRVKFNPET 182
I G+ V+ KR E+
Sbjct: 82 RPHSIDGRVVEPKRAVAREES 102
Score = 53 (23.7 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 14/38 (36%), Positives = 15/38 (39%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKY 336
GY G Y PGY GY +YGGG Y
Sbjct: 261 GY-GGGRGGYGGGGPGYGNQGGGYG--GGYDNYGGGNY 295
Score = 42 (19.8 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 12/38 (31%), Positives = 12/38 (31%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKY 336
GY G PGY GY P GG Y
Sbjct: 246 GYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGY 283
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 284 (105.0 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 57/166 (34%), Positives = 92/166 (55%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T E+ + +Y+ Q+G++ + DP + +SRGF FVT+++ VD +A
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H I + ++PKR R K K+FVGG+ + E +RDYF +YG I
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 140
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ I G +V++
Sbjct: 141 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRK 186
Score = 154 (59.3 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 30/86 (34%), Positives = 48/86 (55%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +KLFVGG+ +T E + DYF +YG++++I I D +G+ RGF FVT+
Sbjct: 105 PGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 164
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
VD ++ H I + ++ R
Sbjct: 165 PVDKIVLQKYHTINGHNAEVRKALSR 190
Score = 124 (48.7 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GGL+ E TE+ +R+Y+ Q+G +T+ D + +GF F++F D +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 162 PKQVICGKEVDVKRVKFNPET 182
I G+ V+ KR E+
Sbjct: 82 RPHSIDGRVVEPKRAVAREES 102
Score = 53 (23.7 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 14/38 (36%), Positives = 15/38 (39%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKY 336
GY G Y PGY GY +YGGG Y
Sbjct: 261 GY-GGGRGGYGGGGPGYGNQGGGYG--GGYDNYGGGNY 295
Score = 42 (19.8 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 12/38 (31%), Positives = 12/38 (31%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKY 336
GY G PGY GY P GG Y
Sbjct: 246 GYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGY 283
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 284 (105.0 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 57/166 (34%), Positives = 92/166 (55%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T E+ + +Y+ Q+G++ + DP + +SRGF FVT+++ VD +A
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H I + ++PKR R K K+FVGG+ + E +RDYF +YG I
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 140
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ I G +V++
Sbjct: 141 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRK 186
Score = 154 (59.3 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 30/86 (34%), Positives = 48/86 (55%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +KLFVGG+ +T E + DYF +YG++++I I D +G+ RGF FVT+
Sbjct: 105 PGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 164
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
VD ++ H I + ++ R
Sbjct: 165 PVDKIVLQKYHTINGHNAEVRKALSR 190
Score = 124 (48.7 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GGL+ E TE+ +R+Y+ Q+G +T+ D + +GF F++F D +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 162 PKQVICGKEVDVKRVKFNPET 182
I G+ V+ KR E+
Sbjct: 82 RPHSIDGRVVEPKRAVAREES 102
Score = 53 (23.7 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 14/38 (36%), Positives = 15/38 (39%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKY 336
GY G Y PGY GY +YGGG Y
Sbjct: 261 GY-GGGRGGYGGGGPGYGNQGGGYG--GGYDNYGGGNY 295
Score = 42 (19.8 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 12/38 (31%), Positives = 12/38 (31%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKY 336
GY G PGY GY P GG Y
Sbjct: 246 GYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGY 283
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 284 (105.0 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 57/166 (34%), Positives = 92/166 (55%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T E+ + +Y+ Q+G++ + DP + +SRGF FVT+++ VD +A
Sbjct: 20 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 79
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H I + ++PKR R K K+FVGG+ + E +RDYF +YG I
Sbjct: 80 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 139
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ I G +V++
Sbjct: 140 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRK 185
Score = 154 (59.3 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 30/86 (34%), Positives = 48/86 (55%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +KLFVGG+ +T E + DYF +YG++++I I D +G+ RGF FVT+
Sbjct: 104 PGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 163
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
VD ++ H I + ++ R
Sbjct: 164 PVDKIVLQKYHTINGHNAEVRKALSR 189
Score = 124 (48.7 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GGL+ E TE+ +R+Y+ Q+G +T+ D + +GF F++F D +
Sbjct: 21 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 80
Query: 162 PKQVICGKEVDVKRVKFNPET 182
I G+ V+ KR E+
Sbjct: 81 RPHSIDGRVVEPKRAVAREES 101
Score = 53 (23.7 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 14/38 (36%), Positives = 15/38 (39%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKY 336
GY G Y PGY GY +YGGG Y
Sbjct: 260 GY-GGGRGGYGGGGPGYGNQGGGYG--GGYDNYGGGNY 294
Score = 42 (19.8 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 12/38 (31%), Positives = 12/38 (31%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKY 336
GY G PGY GY P GG Y
Sbjct: 245 GYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGY 282
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 292 (107.8 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
Identities = 61/182 (33%), Positives = 98/182 (53%)
Query: 4 RANGTAG--PGRNDE-RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGF 60
R G G P ++ RKLF+GGL T + + ++F ++G + + DP T +SRGF
Sbjct: 19 RRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGF 78
Query: 61 AFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEIT 113
FVTY+ + VD + A H + + ++PKR R + +K KIFVGG+ +
Sbjct: 79 GFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTE 138
Query: 114 EQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDV 173
E ++RDYF +YG I + D+ K+GF F++FDD + D+++ I G +V
Sbjct: 139 EYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEV 198
Query: 174 KR 175
K+
Sbjct: 199 KK 200
Score = 160 (61.4 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF +YG++E+I + D +G+ RGFAFVT+
Sbjct: 119 PGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHD 178
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
VD ++ H I + K+ +
Sbjct: 179 TVDKIVVQKYHTINGHNCEVKKALSK 204
Score = 44 (20.5 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
Identities = 13/44 (29%), Positives = 15/44 (34%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKYREAAAY 342
GY G Y GY GY ++GGG Y Y
Sbjct: 287 GYGGGG-PGYGNQGGGYGGGGGGYDGYNEGGNFGGGNYGGGGNY 329
Score = 41 (19.5 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 13/46 (28%), Positives = 17/46 (36%)
Query: 298 YGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGG-KYREAAAY 342
YG G Y Y GY+ + +YGGG Y + Y
Sbjct: 295 YGNQGGGYGGGGGGYDGYNEGG-NFG----GGNYGGGGNYNDFGNY 335
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 292 (107.8 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
Identities = 61/182 (33%), Positives = 98/182 (53%)
Query: 4 RANGTAG--PGRNDE-RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGF 60
R G G P ++ RKLF+GGL T + + ++F ++G + + DP T +SRGF
Sbjct: 19 RRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGF 78
Query: 61 AFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEIT 113
FVTY+ + VD + A H + + ++PKR R + +K KIFVGG+ +
Sbjct: 79 GFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTE 138
Query: 114 EQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDV 173
E ++RDYF +YG I + D+ K+GF F++FDD + D+++ I G +V
Sbjct: 139 EYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEV 198
Query: 174 KR 175
K+
Sbjct: 199 KK 200
Score = 160 (61.4 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF +YG++E+I + D +G+ RGFAFVT+
Sbjct: 119 PGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHD 178
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
VD ++ H I + K+ +
Sbjct: 179 TVDKIVVQKYHTINGHNCEVKKALSK 204
Score = 44 (20.5 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
Identities = 13/44 (29%), Positives = 15/44 (34%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKYREAAAY 342
GY G Y GY GY ++GGG Y Y
Sbjct: 288 GYGGGG-PGYGNQGGGYGGGGGGYDGYNEGGNFGGGNYGGGGNY 330
Score = 41 (19.5 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 13/46 (28%), Positives = 17/46 (36%)
Query: 298 YGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGG-KYREAAAY 342
YG G Y Y GY+ + +YGGG Y + Y
Sbjct: 296 YGNQGGGYGGGGGGYDGYNEGG-NFG----GGNYGGGGNYNDFGNY 336
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 292 (107.8 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
Identities = 61/182 (33%), Positives = 98/182 (53%)
Query: 4 RANGTAG--PGRNDE-RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGF 60
R G G P ++ RKLF+GGL T + + ++F ++G + + DP T +SRGF
Sbjct: 19 RRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGF 78
Query: 61 AFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEIT 113
FVTY+ + VD + A H + + ++PKR R + +K KIFVGG+ +
Sbjct: 79 GFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTE 138
Query: 114 EQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDV 173
E ++RDYF +YG I + D+ K+GF F++FDD + D+++ I G +V
Sbjct: 139 EYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEV 198
Query: 174 KR 175
K+
Sbjct: 199 KK 200
Score = 160 (61.4 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF +YG++E+I + D +G+ RGFAFVT+
Sbjct: 119 PGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHD 178
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
VD ++ H I + K+ +
Sbjct: 179 TVDKIVVQKYHTINGHNCEVKKALSK 204
Score = 44 (20.5 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
Identities = 13/44 (29%), Positives = 15/44 (34%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKYREAAAY 342
GY G Y GY GY ++GGG Y Y
Sbjct: 288 GYGGGG-PGYGNQGGGYGGGGGGYDGYNEGGNFGGGNYGGGGNY 330
Score = 41 (19.5 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 13/46 (28%), Positives = 17/46 (36%)
Query: 298 YGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGG-KYREAAAY 342
YG G Y Y GY+ + +YGGG Y + Y
Sbjct: 296 YGNQGGGYGGGGGGYDGYNEGG-NFG----GGNYGGGGNYNDFGNY 336
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 286 (105.7 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
Identities = 57/166 (34%), Positives = 90/166 (54%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTY T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + + KIFVGG+ + E +RDYF QYG I
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ + G +V++
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179
Score = 157 (60.3 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF QYG++E I I D +G+ RGFAFVT+
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
+VD ++ H + + ++ +
Sbjct: 158 SVDKIVIQKYHTVNGHNCEVRKALSK 183
Score = 50 (22.7 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSY----GGGKY 336
GY+ GS Y + GY GY SY GGG Y
Sbjct: 259 GYSGGSR-GYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGGY 299
Score = 48 (22.0 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 15/45 (33%), Positives = 18/45 (40%)
Query: 299 GYTA-GSYDAYATAYPGYDYSAMGYA-----YPAPATSYGG-GKY 336
GY G+ Y PGY + GY Y + YGG G Y
Sbjct: 243 GYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSY 287
Score = 40 (19.1 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 293 MEEANYG-YTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGK 335
M+ N+G ++G Y Y + GY + ++SYG G+
Sbjct: 329 MKGGNFGGRSSGPYGG-GGQYFAKPRNQGGYGGSSSSSSYGSGR 371
Score = 38 (18.4 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 12/36 (33%), Positives = 13/36 (36%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGG 334
GY GS D Y Y G Y + YG G
Sbjct: 236 GY-GGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSG 270
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 286 (105.7 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
Identities = 57/166 (34%), Positives = 90/166 (54%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTY T + VD +
Sbjct: 35 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 94
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + + KIFVGG+ + E +RDYF QYG I
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 154
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ + G +V++
Sbjct: 155 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 200
Score = 157 (60.3 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF QYG++E I I D +G+ RGFAFVT+
Sbjct: 119 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 178
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
+VD ++ H + + ++ +
Sbjct: 179 SVDKIVIQKYHTVNGHNCEVRKALSK 204
Score = 50 (22.7 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSY----GGGKY 336
GY+ GS Y + GY GY SY GGG Y
Sbjct: 280 GYSGGSR-GYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGGY 320
Score = 48 (22.0 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 15/45 (33%), Positives = 18/45 (40%)
Query: 299 GYTA-GSYDAYATAYPGYDYSAMGYA-----YPAPATSYGG-GKY 336
GY G+ Y PGY + GY Y + YGG G Y
Sbjct: 264 GYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSY 308
Score = 38 (18.4 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 12/36 (33%), Positives = 13/36 (36%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGG 334
GY GS D Y Y G Y + YG G
Sbjct: 257 GY-GGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSG 291
Score = 37 (18.1 bits), Expect = 1.7e-27, Sum P(2) = 1.7e-27
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 294 EEANYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGK 335
+ +N+G G ++ P Y GY + ++SYG G+
Sbjct: 343 QSSNFGPMKGGNFGGRSSGP-YGGGG-GYGGSSSSSSYGSGR 382
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 283 (104.7 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
Identities = 57/166 (34%), Positives = 91/166 (54%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T E+ + +Y+ Q+G++ + DP + +SRGF FVT+++ VD +A
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H I + ++PKR R K K+FVGG+ + E +RDYF +YG I
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 140
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D++ I G +V++
Sbjct: 141 IEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTINGHNAEVRK 186
Score = 153 (58.9 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +KLFVGG+ +T E + DYF +YG++++I I D +G+ RGF FVT+
Sbjct: 105 PGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 164
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
VD + H I + ++ R
Sbjct: 165 PVDKIFLQKYHTINGHNAEVRKALSR 190
Score = 124 (48.7 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GGL+ E TE+ +R+Y+ Q+G +T+ D + +GF F++F D +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 162 PKQVICGKEVDVKRVKFNPET 182
I G+ V+ KR E+
Sbjct: 82 RPHSIDGRVVEPKRAVAREES 102
Score = 53 (23.7 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
Identities = 14/38 (36%), Positives = 15/38 (39%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKY 336
GY G Y PGY GY +YGGG Y
Sbjct: 261 GY-GGGRGGYGGGGPGYGNQGGGYG--GGYDNYGGGNY 295
Score = 42 (19.8 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 12/38 (31%), Positives = 12/38 (31%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKY 336
GY G PGY GY P GG Y
Sbjct: 246 GYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGY 283
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 286 (105.7 bits), Expect = 9.6e-29, Sum P(2) = 9.6e-29
Identities = 57/166 (34%), Positives = 90/166 (54%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTY T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + + KIFVGG+ + E +RDYF QYG I
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ + G +V++
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179
Score = 157 (60.3 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF QYG++E I I D +G+ RGFAFVT+
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
+VD ++ H + + ++ +
Sbjct: 158 SVDKIVIQKYHTVNGHNCEVRKALSK 183
Score = 49 (22.3 bits), Expect = 9.6e-29, Sum P(2) = 9.6e-29
Identities = 14/38 (36%), Positives = 16/38 (42%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSY--GGG 334
GY+ GS Y + GY GY SY GGG
Sbjct: 259 GYSGGSR-GYGSGGQGYGNQGSGYGGSGSYDSYNNGGG 295
Score = 48 (22.0 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 15/45 (33%), Positives = 18/45 (40%)
Query: 299 GYTA-GSYDAYATAYPGYDYSAMGYA-----YPAPATSYGG-GKY 336
GY G+ Y PGY + GY Y + YGG G Y
Sbjct: 243 GYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSY 287
Score = 40 (19.1 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 293 MEEANYG-YTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGK 335
M+ N+G ++G Y Y + GY + ++SYG G+
Sbjct: 328 MKGGNFGGRSSGPYGG-GGQYFAKPRNQGGYGGSSSSSSYGSGR 370
Score = 38 (18.4 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 12/36 (33%), Positives = 13/36 (36%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGG 334
GY GS D Y Y G Y + YG G
Sbjct: 236 GY-GGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSG 270
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 286 (105.7 bits), Expect = 9.6e-29, Sum P(2) = 9.6e-29
Identities = 57/166 (34%), Positives = 90/166 (54%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTY T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + + KIFVGG+ + E +RDYF QYG I
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ + G +V++
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179
Score = 157 (60.3 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF QYG++E I I D +G+ RGFAFVT+
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
+VD ++ H + + ++ +
Sbjct: 158 SVDKIVIQKYHTVNGHNCEVRKALSK 183
Score = 49 (22.3 bits), Expect = 9.6e-29, Sum P(2) = 9.6e-29
Identities = 14/38 (36%), Positives = 16/38 (42%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSY--GGG 334
GY+ GS Y + GY GY SY GGG
Sbjct: 259 GYSGGSR-GYGSGGQGYGNQGSGYGGSGSYDSYNNGGG 295
Score = 48 (22.0 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 15/45 (33%), Positives = 18/45 (40%)
Query: 299 GYTA-GSYDAYATAYPGYDYSAMGYA-----YPAPATSYGG-GKY 336
GY G+ Y PGY + GY Y + YGG G Y
Sbjct: 243 GYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSY 287
Score = 40 (19.1 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 293 MEEANYG-YTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGK 335
M+ N+G ++G Y Y + GY + ++SYG G+
Sbjct: 329 MKGGNFGGRSSGPYGG-GGQYFAKPRNQGGYGGSSSSSSYGSGR 371
Score = 38 (18.4 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 12/36 (33%), Positives = 13/36 (36%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGG 334
GY GS D Y Y G Y + YG G
Sbjct: 236 GY-GGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSG 270
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 290 (107.1 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 60/182 (32%), Positives = 99/182 (54%)
Query: 4 RANGTAG--PGRNDE-RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGF 60
R G G P ++ RKLF+GGL T + + ++F ++G + + DP T +SRGF
Sbjct: 5 RRKGKVGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGF 64
Query: 61 AFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEIT 113
FVTY+ + VD ++A H + + ++PKR R + +K KIFVGG+ +
Sbjct: 65 GFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTE 124
Query: 114 EQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDV 173
E ++R+YF +YG I + D+ K+GF F++FDD + D+++ I G +V
Sbjct: 125 EYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEV 184
Query: 174 KR 175
K+
Sbjct: 185 KK 186
Score = 156 (60.0 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 29/86 (33%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + +YF +YG++E+I + D +G+ RGFAFVT+
Sbjct: 105 PGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHD 164
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
VD ++ H I + K+ +
Sbjct: 165 TVDKIVVQKYHTINGHNCEVKKALSK 190
Score = 44 (20.5 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 14/51 (27%), Positives = 18/51 (35%)
Query: 293 MEEANYGYTAGSYD-AYATAYPGYDYSAMGYAYPAPATSYGGGKYREAAAY 342
M N+G G Y GY GY ++GGG Y + Y
Sbjct: 210 MGRGNFGGGGGGGGPGYGNPGGGYGGGGGGYDGYNEGGNFGGGNYGGSGNY 260
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 286 (105.7 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 57/166 (34%), Positives = 90/166 (54%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTY T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + + KIFVGG+ + E +RDYF QYG I
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ + G +V++
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179
Score = 157 (60.3 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF QYG++E I I D +G+ RGFAFVT+
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
+VD ++ H + + ++ +
Sbjct: 158 SVDKIVIQKYHTVNGHNCEVRKALSK 183
Score = 47 (21.6 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 303 GSYDAYATAYPGYDYSAMGYAYPAPATSYGGGK 335
G Y Y G+ GY + ++SYG G+
Sbjct: 235 GGYGGSGDGYNGFGNDG-GYGGSSSSSSYGSGR 266
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 280 (103.6 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 56/166 (33%), Positives = 91/166 (54%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T E+ + +Y+ Q+G++ + DP + +SRGF FVT+++ VD +A
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H I + ++PKR R K K+FVGG+ + E +RDYF +YG +
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKVDT 140
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F +FDD + D+++ I G +V++
Sbjct: 141 IEIITDRQSGKKRGFGFFTFDDHDPVDKIVLQKYHTINGHNAEVRK 186
Score = 150 (57.9 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +KLFVGG+ +T E + DYF +YG+V++I I D +G+ RGF F T+
Sbjct: 105 PGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKVDTIEIITDRQSGKKRGFGFFTFDDHD 164
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
VD ++ H I + ++ R
Sbjct: 165 PVDKIVLQKYHTINGHNAEVRKALSR 190
Score = 124 (48.7 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GGL+ E TE+ +R+Y+ Q+G +T+ D + +GF F++F D +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 162 PKQVICGKEVDVKRVKFNPET 182
I G+ V+ KR E+
Sbjct: 82 RPHSIDGRVVEPKRAVAREES 102
Score = 53 (23.7 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 14/38 (36%), Positives = 15/38 (39%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKY 336
GY G Y PGY GY +YGGG Y
Sbjct: 261 GY-GGGRGGYGGGGPGYGNQGGGYG--GGYDNYGGGNY 295
Score = 42 (19.8 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 12/38 (31%), Positives = 12/38 (31%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKY 336
GY G PGY GY P GG Y
Sbjct: 246 GYGGGLGGGNFGGIPGYGGGRGGYGGGGPGYGNQGGGY 283
Score = 37 (18.1 bits), Expect = 7.4e-27, Sum P(2) = 7.4e-27
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 314 GYDYSAMGYAYPAPATSYGGGKY 336
G + G P P +++ GG Y
Sbjct: 210 GDSHGGGGNFGPGPGSNFRGGSY 232
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 284 (105.0 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 57/166 (34%), Positives = 92/166 (55%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T E+ + +Y+ Q+G++ + DP + +SRGF FVT+++ VD +A
Sbjct: 20 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 79
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H I + ++PKR R K K+FVGG+ + E +RDYF +YG I
Sbjct: 80 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 139
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ I G +V++
Sbjct: 140 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRK 185
Score = 154 (59.3 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 30/86 (34%), Positives = 48/86 (55%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +KLFVGG+ +T E + DYF +YG++++I I D +G+ RGF FVT+
Sbjct: 104 PGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 163
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
VD ++ H I + ++ R
Sbjct: 164 PVDKIVLQKYHTINGHNAEVRKALSR 189
Score = 124 (48.7 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GGL+ E TE+ +R+Y+ Q+G +T+ D + +GF F++F D +
Sbjct: 21 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 80
Query: 162 PKQVICGKEVDVKRVKFNPET 182
I G+ V+ KR E+
Sbjct: 81 RPHSIDGRVVEPKRAVAREES 101
Score = 47 (21.6 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 303 GSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKYREAAAY 342
G D Y + G+ GY P +YG G Y + Y
Sbjct: 228 GGSDGYGSGR-GFGDGYNGYG-GGPGGNYGSGNYNDFGNY 265
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 66/177 (37%), Positives = 102/177 (57%)
Query: 7 GTAGPGR-NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTY 65
G A P +D K+F+GGL T ++ + +YF Q+GEV+ + DP T +SRGF FVT+
Sbjct: 9 GLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68
Query: 66 TTQKAVDDLLAAGDHYIGNKKIDPK-RVTKRVNPLKC----KIFVGGLTTEITEQDVRDY 120
Q VD +LA H + +K IDPK +R P KIFVGGL+ T +DV+ Y
Sbjct: 69 MDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHY 128
Query: 121 FSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVK 177
F Q+G + + FDK+ N +GF F++F+ +++ ++V + I K V+ K+ +
Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 185
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
Identities = 67/162 (41%), Positives = 94/162 (58%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLFVGGL +T ++ + YFSQYGEV I D T QSRGF FV + V +LA
Sbjct: 55 RKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 114
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFD 135
+ H + + IDPK+ R + K KIFVGG+ E ++R+YF ++G +TE +D
Sbjct: 115 SRPHTLDGRNIDPKQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYD 174
Query: 136 KSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVK 177
K +GF FI+F+D+ DQ + I GK+V+VKR +
Sbjct: 175 AEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 216
Score = 147 (56.8 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 10 GPGRNDER--KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTT 67
GP ++ + K+FVGG+ N GE E+ +YF ++G V + + D + RGF F+T+
Sbjct: 131 GPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 190
Query: 68 QKAVDDLLAAGDHYIGNKKIDPKRVTKR 95
+++VD + H I KK++ KR R
Sbjct: 191 EQSVDQAVNMHFHDIMGKKVEVKRAEPR 218
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 292 (107.8 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
Identities = 61/182 (33%), Positives = 98/182 (53%)
Query: 4 RANGTAG--PGRNDE-RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGF 60
R G G P ++ RKLF+GGL T + + ++F ++G + + DP T +SRGF
Sbjct: 19 RRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGF 78
Query: 61 AFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEIT 113
FVTY+ + VD + A H + + ++PKR R + +K KIFVGG+ +
Sbjct: 79 GFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTE 138
Query: 114 EQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDV 173
E ++RDYF +YG I + D+ K+GF F++FDD + D+++ I G +V
Sbjct: 139 EYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEV 198
Query: 174 KR 175
K+
Sbjct: 199 KK 200
Score = 160 (61.4 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF +YG++E+I + D +G+ RGFAFVT+
Sbjct: 119 PGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHD 178
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
VD ++ H I + K+ +
Sbjct: 179 TVDKIVVQKYHTINGHNCEVKKALSK 204
Score = 37 (18.1 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 330 SYGGGKYREAAAY 342
SYGGG Y Y
Sbjct: 259 SYGGGNYGGGGNY 271
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 291 (107.5 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
Identities = 58/166 (34%), Positives = 90/166 (54%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTY T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMN 73
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + + KIFVGG+ + E +RDYF QYG I
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD N D+++ + G +V++
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRK 179
Score = 158 (60.7 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF QYG++E I I D +G+ RGFAFVT+
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHN 157
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
+VD ++ H + + ++ +
Sbjct: 158 SVDKIVIQKYHTVNGHNCEVRKALSK 183
Score = 38 (18.4 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 293 MEEANYG-YTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGK 335
M+ N+G + G Y Y + GY + ++SYG G+
Sbjct: 276 MKGGNFGGRSLGPYGG-GGQYFAKPRNQGGYGGSSSSSSYGSGR 318
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 285 (105.4 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 58/176 (32%), Positives = 94/176 (53%)
Query: 8 TAGPGRNDE-RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYT 66
+A P ++ RKLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTY
Sbjct: 4 SASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 63
Query: 67 TQKAVDDLLAAGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRD 119
T + VD + H + + ++PKR R + + KIFVGG+ + E +RD
Sbjct: 64 TVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRD 123
Query: 120 YFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
YF QYG I + D+ K+GF F++FDD + D+++ + G +V++
Sbjct: 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRK 179
Score = 43 (20.2 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 293 MEEANYG-YTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGK 335
M+ N+G ++G Y Y + GY + ++SYG G+
Sbjct: 276 MKGGNFGGRSSGPYGG-GGQYFAKPQNQGGYGVSSSSSSYGSGR 318
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 276 (102.2 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 62/166 (37%), Positives = 96/166 (57%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEV-ESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
KLFVGGL+ T ++ + +F QYG++ + + + N P +SR F FVTY++ + D ++
Sbjct: 7 KLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQ-RSRCFGFVTYSSTEEADAAMS 65
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + +D KR R + K KIFVGGL +I ++ ++DYFSQ+G I +
Sbjct: 66 ARPHIVDGNNVDLKRAVAREDAGKPEMLAKVKKIFVGGLKDDIEDEHLQDYFSQFGPIEK 125
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
Q DK K+GF F+ FDD + AD+ + ICG +V+VK+
Sbjct: 126 AQVITDKDTGKKRGFGFVYFDDNDSADKAVVMKFHSICGHKVEVKK 171
Score = 141 (54.7 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGGL + ++ + DYFSQ+G +E + D TG+ RGF FV + + D +
Sbjct: 97 KKIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADKAVV 156
Query: 77 AGDHYIGNKKIDPKR-VTKR 95
H I K++ K+ +TK+
Sbjct: 157 MKFHSICGHKVEVKKALTKQ 176
Score = 128 (50.1 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 23/75 (30%), Positives = 41/75 (54%)
Query: 101 CKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK 160
CK+FVGGL + T++ +R +F QYG +T+ ++ + F F+++ AD +
Sbjct: 6 CKLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAMS 65
Query: 161 NPKQVICGKEVDVKR 175
++ G VD+KR
Sbjct: 66 ARPHIVDGNNVDLKR 80
Score = 52 (23.4 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 298 YGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGG 334
YG A Y A T Y Y S + P P GGG
Sbjct: 255 YGQQASGYGAMKTGYGNYS-SGRQSSGPYPRGGGGGG 290
Score = 51 (23.0 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 295 EANYGYTAGSYDAYATAYP-GYDYSAMGYAYPAPATSYGGGK 335
++ GY G D Y G YS G Y A+ YG K
Sbjct: 225 DSQNGYGGGYSDQMGGGYGNGNGYSDFGEGYGQQASGYGAMK 266
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 313 (115.2 bits), Expect = 7.4e-28, P = 7.4e-28
Identities = 58/166 (34%), Positives = 101/166 (60%)
Query: 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKA 70
P ++ K+F+GGL+ T + + DYF Q+GEV ++ D TG+SRGF F+T+ K
Sbjct: 157 PFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKC 216
Query: 71 VDDLLAAGDHYIGNKKIDPKRVTKRVNPLK-CKIFVGGLTTEITEQDVRDYFSQYGSITE 129
V+++++ +H++ K IDPKR R K K+FVGG+ + TE++ R++F+Q+G + +
Sbjct: 217 VNEVMSK-EHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLD 275
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
DK +GF F+++++++ + + P I GK V+VKR
Sbjct: 276 ATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKR 321
Score = 139 (54.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 30/89 (33%), Positives = 50/89 (56%)
Query: 11 PGRNDER--KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
P E+ K+FVGG+ + E+E ++F+Q+G V ++ D TG+ RGF FVTY +
Sbjct: 239 PREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENE 298
Query: 69 KAVDDLLAAGDHYIGNKKIDPKRVTKRVN 97
AV+ ++ I K ++ KR T + +
Sbjct: 299 SAVEATMSQPYITIHGKPVEVKRATPKAS 327
Score = 130 (50.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 38/136 (27%), Positives = 60/136 (44%)
Query: 51 DPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKI-----------DPKRVTKRVNPL 99
DP + RG A + T A D + D+Y N+ D T N
Sbjct: 102 DPSSYDIRGQALSSATWDNAEDGENSKNDNYNENQSALTGSGAMESNEDNAEETSPFNRE 161
Query: 100 KCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVL 159
K+F+GGL E T+ +RDYF Q+G + + D + +GF F++F + ++V+
Sbjct: 162 DGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM 221
Query: 160 KNPKQVICGKEVDVKR 175
+ GK +D KR
Sbjct: 222 SKEHH-LDGKIIDPKR 236
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 272 (100.8 bits), Expect = 8.3e-28, Sum P(2) = 8.3e-28
Identities = 58/175 (33%), Positives = 97/175 (55%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
+G G + K+FVGGL R T E +F +YGE+ I D TGQ RGF FVTY
Sbjct: 34 SGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADS 93
Query: 69 KAVDDLLAAGDHYIGNKKIDPKRVTKR----VNPLKCK-IFVGGLTTEITEQDVRDYFSQ 123
VD ++ +H I K+++ KR R N K K IFVGG+ + + + + +++F Q
Sbjct: 94 SVVDKVIQ-DNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQ 152
Query: 124 YGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQV-ICGKEVDVKRVK 177
+G + E Q D S +GF F++++ +++ D +L ++ + G +V++K+ +
Sbjct: 153 FGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAE 207
Score = 159 (61.0 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 34/90 (37%), Positives = 51/90 (56%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGG+ + + E ++F Q+GE++ I D TG+SRGF FVTY ++ VD LLA
Sbjct: 130 KKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLA 189
Query: 77 AGDHY------IGNKKIDPKRVTKRVNPLK 100
G+ + KK +PK+ P K
Sbjct: 190 KGNRIELSGTQVEIKKAEPKKPNSVTTPSK 219
Score = 58 (25.5 bits), Expect = 8.3e-28, Sum P(2) = 8.3e-28
Identities = 15/36 (41%), Positives = 16/36 (44%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGG 334
GY G D Y G Y G Y P+ SYGGG
Sbjct: 318 GYGGGPGDMY-----GGSYGEPGGGYGGPSGSYGGG 348
Score = 37 (18.1 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAY-P---APATSYGG 333
G +G Y Y + GY G P PA Y G
Sbjct: 259 GGRSGGYGGYGGEFGGYGGGGYGGGVGPYRGEPALGYSG 297
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 286 (105.7 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 57/166 (34%), Positives = 90/166 (54%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTY T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + + KIFVGG+ + E +RDYF QYG I
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ + G +V++
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179
Score = 157 (60.3 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF QYG++E I I D +G+ RGFAFVT+
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
+VD ++ H + + ++ +
Sbjct: 158 SVDKIVIQKYHTVNGHNCEVRKALSK 183
Score = 40 (19.1 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 293 MEEANYG-YTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGK 335
M+ N+G ++G Y Y + GY + ++SYG G+
Sbjct: 276 MKGGNFGGRSSGPYGG-GGQYFAKPRNQGGYGGSSSSSSYGSGR 318
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 286 (105.7 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 57/166 (34%), Positives = 90/166 (54%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTY T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + + KIFVGG+ + E +RDYF QYG I
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ + G +V++
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179
Score = 157 (60.3 bits), Expect = 9.0e-10, Sum P(2) = 9.0e-10
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF QYG++E I I D +G+ RGFAFVT+
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
+VD ++ H + + ++ +
Sbjct: 158 SVDKIVIQKYHTVNGHNCEVRKALSK 183
Score = 40 (19.1 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 293 MEEANYG-YTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGK 335
M+ N+G ++G Y Y + GY + ++SYG G+
Sbjct: 263 MKGGNFGGRSSGPYGG-GGQYFAKPRNQGGYGGSSSSSSYGSGR 305
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 286 (105.7 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 57/166 (34%), Positives = 90/166 (54%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTY T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + + KIFVGG+ + E +RDYF QYG I
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ + G +V++
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179
Score = 157 (60.3 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF QYG++E I I D +G+ RGFAFVT+
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
+VD ++ H + + ++ +
Sbjct: 158 SVDKIVIQKYHTVNGHNCEVRKALSK 183
Score = 40 (19.1 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 293 MEEANYG-YTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGK 335
M+ N+G ++G Y Y + GY + ++SYG G+
Sbjct: 260 MKGGNFGGRSSGPYGG-GGQYFAKPRNQGGYGGSSSSSSYGSGR 302
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 286 (105.7 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 57/166 (34%), Positives = 90/166 (54%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTY T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + + KIFVGG+ + E +RDYF QYG I
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ + G +V++
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179
Score = 157 (60.3 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF QYG++E I I D +G+ RGFAFVT+
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
+VD ++ H + + ++ +
Sbjct: 158 SVDKIVIQKYHTVNGHNCEVRKALSK 183
Score = 40 (19.1 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 293 MEEANYG-YTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGK 335
M+ N+G ++G Y Y + GY + ++SYG G+
Sbjct: 276 MKGGNFGGRSSGPYGG-GGQYFAKPRNQGGYGGSSSSSSYGSGR 318
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 286 (105.7 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 57/166 (34%), Positives = 90/166 (54%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTY T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + + KIFVGG+ + E +RDYF QYG I
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ + G +V++
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179
Score = 157 (60.3 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF QYG++E I I D +G+ RGFAFVT+
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
+VD ++ H + + ++ +
Sbjct: 158 SVDKIVIQKYHTVNGHNCEVRKALSK 183
Score = 40 (19.1 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 293 MEEANYG-YTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGK 335
M+ N+G ++G Y Y + GY + ++SYG G+
Sbjct: 276 MKGGNFGGRSSGPYGG-GGQYFAKPRNQGGYGGSSSSSSYGSGR 318
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 286 (105.7 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 57/166 (34%), Positives = 90/166 (54%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTY T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + + KIFVGG+ + E +RDYF QYG I
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ + G +V++
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179
Score = 157 (60.3 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF QYG++E I I D +G+ RGFAFVT+
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
+VD ++ H + + ++ +
Sbjct: 158 SVDKIVIQKYHTVNGHNCEVRKALSK 183
Score = 40 (19.1 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 293 MEEANYG-YTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGK 335
M+ N+G ++G Y Y + GY + ++SYG G+
Sbjct: 276 MKGGNFGGRSSGPYGG-GGQYFAKPRNQGGYGGSSSSSSYGSGR 318
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 286 (105.7 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 57/166 (34%), Positives = 90/166 (54%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTY T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + + KIFVGG+ + E +RDYF QYG I
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ + G +V++
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179
Score = 157 (60.3 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF QYG++E I I D +G+ RGFAFVT+
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
+VD ++ H + + ++ +
Sbjct: 158 SVDKIVIQKYHTVNGHNCEVRKALSK 183
Score = 40 (19.1 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 293 MEEANYG-YTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGK 335
M+ N+G ++G Y Y + GY + ++SYG G+
Sbjct: 276 MKGGNFGGRSSGPYGG-GGQYFAKPRNQGGYGGSSSSSSYGSGR 318
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 286 (105.7 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 57/166 (34%), Positives = 90/166 (54%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTY T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + + KIFVGG+ + E +RDYF QYG I
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ + G +V++
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179
Score = 157 (60.3 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF QYG++E I I D +G+ RGFAFVT+
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
+VD ++ H + + ++ +
Sbjct: 158 SVDKIVIQKYHTVNGHNCEVRKALSK 183
Score = 40 (19.1 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 293 MEEANYG-YTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGK 335
M+ N+G ++G Y Y + GY + ++SYG G+
Sbjct: 276 MKGGNFGGRSSGPYGG-GGQYFAKPRNQGGYGGSSSSSSYGSGR 318
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 286 (105.7 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 57/166 (34%), Positives = 90/166 (54%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTY T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + + KIFVGG+ + E +RDYF QYG I
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ + G +V++
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179
Score = 40 (19.1 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 293 MEEANYG-YTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGK 335
M+ N+G ++G Y Y + GY + ++SYG G+
Sbjct: 276 MKGGNFGGRSSGPYGG-GGQYFAKPRNQGGYGGSSSSSSYGSGR 318
>UNIPROTKB|D4AD23 [details] [associations]
symbol:D4AD23 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
Length = 313
Score = 266 (98.7 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 58/168 (34%), Positives = 89/168 (52%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+G L T ++ + +F Q+G + + DP T +SRGF FVTY T + VD +
Sbjct: 14 RKLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A + + ++PKR R + + KIFVGG+ E TE +RDYF QYG
Sbjct: 74 ARPQKVNGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIK-EDTEHHLRDYFEQYGKTEV 132
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVK 177
+ D+ + K+GF F++FDD + D+++ + G + RVK
Sbjct: 133 IEIMTDRGRGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCET-RVK 179
Score = 143 (55.4 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 30/81 (37%), Positives = 45/81 (55%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF QYG+ E I I D G+ RGFAFVT+
Sbjct: 98 PGAHLTVKKIFVGGIKEDT-EHHLRDYFEQYGKTEVIEIMTDRGRGKKRGFAFVTFDDHD 156
Query: 70 AVDDLLAAGDHYIGNKKIDPK 90
+VD ++ H + + +
Sbjct: 157 SVDKIVIQKYHTVNGHNCETR 177
Score = 60 (26.2 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSY--GGGK 335
N+GY+ GS Y + GY GY SY GGG+
Sbjct: 197 NFGYSGGSR-GYGSGGQGYGNQGSGYGGSGSYDSYNNGGGR 236
Score = 40 (19.1 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 293 MEEANYG-YTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGK 335
M+ N+G ++G Y Y + GY + ++SYG G+
Sbjct: 269 MKGGNFGGRSSGPYGG-GGQYFAKPRNQGGYGGSSSSSSYGSGR 311
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 265 (98.3 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 62/166 (37%), Positives = 96/166 (57%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEV-ESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
KLFVGGL+ T + YF Q+G + + + ++ND +SR F FVTY+T + D +A
Sbjct: 9 KLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQ-RSRCFGFVTYSTSEEADAAMA 67
Query: 77 AGDHYIGNKKIDPKRVTKRVN---P---LKCK-IFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + K ++ KR R + P K K IFVGGL +I E+D+ ++FSQ+G I +
Sbjct: 68 ARPHVVDGKNVEVKRAVAREDAGRPEALAKVKKIFVGGLKDDIEEKDLTEFFSQFGMIEK 127
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ DK K+GF F+ F+D + AD+ + +I G +V+VK+
Sbjct: 128 SEVITDKDTGKKRGFGFVHFEDNDSADKAVVLKFHMINGHKVEVKK 173
Score = 144 (55.7 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 28/80 (35%), Positives = 47/80 (58%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGGL + EK++ ++FSQ+G +E + D TG+ RGF FV + + D +
Sbjct: 99 KKIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADKAVV 158
Query: 77 AGDHYIGNKKIDPKR-VTKR 95
H I K++ K+ +TK+
Sbjct: 159 LKFHMINGHKVEVKKALTKQ 178
Score = 128 (50.1 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 101 CKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK 160
CK+FVGGL + T +R YF Q+G++T+ + + F F+++ AD +
Sbjct: 8 CKLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAAMA 67
Query: 161 NPKQVICGKEVDVKR 175
V+ GK V+VKR
Sbjct: 68 ARPHVVDGKNVEVKR 82
Score = 61 (26.5 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 21/53 (39%), Positives = 23/53 (43%)
Query: 299 GYTAGSYDAYATAYPG-YDYSAMGYAYPAPATSYG---GGK-Y--REAAAYPR 344
GY G Y Y G DYS G Y ++ YG GG Y R A YPR
Sbjct: 247 GY-GGGYGEQMGGYGGGNDYSDFGSGYGQQSSGYGPMKGGNTYGGRSGAPYPR 298
Score = 49 (22.3 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 299 GYTAGSYDAYATAYPG-YDYSAMGYAYPAPATSYGGG 334
G G Y Y Y G Y + GY + YGGG
Sbjct: 207 GGRGGGYGGYGGGYGGGYGGNDGGYGGSYGSGGYGGG 243
>UNIPROTKB|F1SA35 [details] [associations]
symbol:LOC100737421 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:FP326688 RefSeq:XP_003480852.1
Ensembl:ENSSSCT00000014862 GeneID:100737421 KEGG:ssc:100737421
OMA:STFGNIV Uniprot:F1SA35
Length = 349
Score = 282 (104.3 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 59/168 (35%), Positives = 91/168 (54%)
Query: 14 NDE-RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVD 72
N++ KLF+GGL T EK + +Y+ Q+G++ + DP +SRGF FVT+++ VD
Sbjct: 17 NEQFHKLFIGGLCSRTTEKSLRNYYQQWGKLTDCVVLRDPSNKRSRGFGFVTFSSVAEVD 76
Query: 73 DLLAAGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYG 125
+AA H + K +DPKR R K K+FVGG+ + E +RDYF +YG
Sbjct: 77 AAMAARPHSVDGKVVDPKRAVAREESEKPGAHLAVKKLFVGGIKEDTEEHHLRDYFEKYG 136
Query: 126 SITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDV 173
I + D+ K+GF F++FDD + D+++ I G +V
Sbjct: 137 KIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHHAEV 184
Score = 147 (56.8 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+KLFVGG+ +T E + DYF +YG++++I I D +G+ RGF FVT+ VD ++
Sbjct: 112 KKLFVGGIKEDTEEHHLRDYFEKYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVL 171
Query: 77 AGDHYIGNKKIDPKRVTKR 95
H I + + R
Sbjct: 172 QKYHTINGHHAEVGKALSR 190
Score = 139 (54.0 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 32/98 (32%), Positives = 50/98 (51%)
Query: 85 KKIDPKRVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGF 144
K + KR KR+N K+F+GGL + TE+ +R+Y+ Q+G +T+ D S +GF
Sbjct: 6 KSVPLKR-KKRINEQFHKLFIGGLCSRTTEKSLRNYYQQWGKLTDCVVLRDPSNKRSRGF 64
Query: 145 CFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFNPET 182
F++F D + + GK VD KR E+
Sbjct: 65 GFVTFSSVAEVDAAMAARPHSVDGKVVDPKRAVAREES 102
Score = 42 (19.8 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 13/42 (30%), Positives = 14/42 (33%)
Query: 298 YGYTAGSYDAYATAYPGYD---YSAMGYAYPAPATSYGGGKY 336
YGY G + PGY Y G Y GG Y
Sbjct: 245 YGYGGGPGGGNFGSCPGYGGGGYGGGGPGYGNQKRGSGGSNY 286
>UNIPROTKB|J9NZR9 [details] [associations]
symbol:J9NZR9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03000342
Ensembl:ENSCAFT00000001210 OMA:GSKINAN Uniprot:J9NZR9
Length = 269
Score = 281 (104.0 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
Identities = 60/171 (35%), Positives = 96/171 (56%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A + D+ K+F+ GL +T +K++ +GEV I+ DP TG+SRGF FV +
Sbjct: 8 ANKNQQDDGKMFIRGLSWDTSKKDLT-----FGEVVDCIIETDPVTGRSRGFGFVLFKEA 62
Query: 69 KAVDDLLAAGDHYIGNKKIDPKRVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSIT 128
+VD +L +H + + IDPKR P K K+FVGGL+ + E+ +++Y +G I
Sbjct: 63 ASVDKVLELKEHKLDSMLIDPKRAKALKEPPK-KVFVGGLSPDTYEEQIKEYLGAFGEIE 121
Query: 129 EFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGK-EVDVKRVK 177
+ P D N ++GFCFI++ D+ ++L+N Q+ GK E+ V K
Sbjct: 122 NIELPMDTKTNERRGFCFITYTDEKPVKKLLENRYHQIGSGKCEIKVAEPK 172
Score = 40 (19.1 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 292 HMEEANYGYTAGSYDAYATAYPGY-DY 317
+ + +YGYT +Y Y GY DY
Sbjct: 232 YSDYGSYGYTEFNYGNYGYGQ-GYADY 257
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 64/172 (37%), Positives = 96/172 (55%)
Query: 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAV 71
G D K+F+GGL T + + DYF ++GEV + DP T ++RGF F+T+ +V
Sbjct: 40 GSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSV 99
Query: 72 DDLLAAGDHYIGNKKIDPK-----RV-TKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYG 125
D +L +H + KKIDPK R K V K K+F+GGL+ T +D++ YF YG
Sbjct: 100 DKVLNNREHELDGKKIDPKVAFPKRTQAKLVTKTK-KVFIGGLSATSTLEDMKQYFETYG 158
Query: 126 SITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVK 177
+ + FDK+ +GF F++FD VAD+V + I GK V+ K+ +
Sbjct: 159 KVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKAQ 210
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 263 (97.6 bits), Expect = 9.4e-27, Sum P(2) = 9.4e-27
Identities = 55/165 (33%), Positives = 90/165 (54%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
KLF+GGL T E+ + +Y+ Q+G++ + DP + +SRGF FVT+++ VD +AA
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMAA 69
Query: 78 GDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITEF 130
H I + ++PKR R K K+FVGG+ + E +RDYF +YG I
Sbjct: 70 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 129
Query: 131 QQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ G +V++
Sbjct: 130 EIITDRQSG-KRGFGFVTFDDHDPVDKIVLQKYHTKNGHNAEVRK 173
Score = 138 (53.6 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +KLFVGG+ +T E + DYF +YG++++I I D +G+ RGF FVT+
Sbjct: 93 PGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGK-RGFGFVTFDDHD 151
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
VD ++ H + ++ R
Sbjct: 152 PVDKIVLQKYHTKNGHNAEVRKALSR 177
Score = 132 (51.5 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 101 CKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK 160
CK+F+GGL+ E TE+ +R+Y+ Q+G +T+ D + +GF F++F D +
Sbjct: 9 CKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMA 68
Query: 161 NPKQVICGKEVDVKRVKFNPET 182
I G+ V+ KR E+
Sbjct: 69 ARPHSIDGRVVEPKRAVAREES 90
Score = 53 (23.7 bits), Expect = 9.4e-27, Sum P(2) = 9.4e-27
Identities = 14/38 (36%), Positives = 15/38 (39%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKY 336
GY G Y PGY GY +YGGG Y
Sbjct: 248 GY-GGGRGGYGGGGPGYGNQGGGYG--GGYDNYGGGNY 282
Score = 44 (20.5 bits), Expect = 8.2e-26, Sum P(2) = 8.2e-26
Identities = 12/38 (31%), Positives = 12/38 (31%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKY 336
GY G PGY GY P GG Y
Sbjct: 233 GYGGGPRSGNFGGSPGYGGGRGGYGGGGPGYGNQGGGY 270
Score = 42 (19.8 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 15/40 (37%), Positives = 16/40 (40%)
Query: 298 YGYTAGSYDAYATAYPGYDYSA-MGYAYPAPATSYGGGKY 336
YG G Y Y G +Y MG P YGGG Y
Sbjct: 263 YGNQGGGYGGGYDNYGGGNYGRNMG----GP---YGGGNY 295
>ZFIN|ZDB-GENE-060224-1 [details] [associations]
symbol:hnrnpa3 "heterogeneous nuclear
ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
Uniprot:B0V1I7
Length = 312
Score = 276 (102.2 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 56/166 (33%), Positives = 88/166 (53%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T E + +F Q+G++ + DP +SRGF FVTY++ VD +
Sbjct: 13 RKLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSVSEVDAAMT 72
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + K KIFVGG+ + E +R+YF YG I
Sbjct: 73 ARPHKVDGRVVEPKRAVSREDSNKPGAHLTVKKIFVGGIKEDTEEYHIREYFECYGKIET 132
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
++S K+GFCF++FDD + D+++ I +V++
Sbjct: 133 IDIMEERSTGKKRGFCFVTFDDHDTVDKIVAQKYHTINSHNCEVRK 178
Score = 38 (18.4 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 314 GYDYSAMGYAYPAPATSYGGGK 335
G Y+ G Y YGGG+
Sbjct: 220 GDGYNGFGGNYGGGPGGYGGGR 241
>UNIPROTKB|F1LRH1 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:628778 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005844 GeneTree:ENSGT00700000104255
IPI:IPI00202463 Ensembl:ENSRNOT00000001532 ArrayExpress:F1LRH1
Uniprot:F1LRH1
Length = 329
Score = 275 (101.9 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 56/150 (37%), Positives = 87/150 (58%)
Query: 33 INDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPK-R 91
+ +YF Q+GEV+ + DP T +SRGF FVT+ Q VD +LA H + +K IDPK
Sbjct: 3 LREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 62
Query: 92 VTKRVNPLKC----KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFI 147
+R P KIFVGGL+ T +DV+ YF Q+G + + FDK+ N +GF F+
Sbjct: 63 FPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFV 122
Query: 148 SFDDQNVADQVLKNPKQVICGKEVDVKRVK 177
+F+ +++ ++V + I K V+ K+ +
Sbjct: 123 TFESEDIVEKVCEIHFHEINNKMVECKKAQ 152
Score = 143 (55.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGGL NT +++ YF Q+G+V+ + D T + RGF FVT+ ++ V+ +
Sbjct: 76 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 135
Query: 77 AGDHYIGNKKIDPKR 91
H I NK ++ K+
Sbjct: 136 IHFHEINNKMVECKK 150
Score = 38 (18.4 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 243 YDYSAMGYAYPAPAVQTMDTPL 264
Y A GY Y P + TPL
Sbjct: 199 YTGLAPGYTYQFPEFRVERTPL 220
>UNIPROTKB|E9PSU5 [details] [associations]
symbol:E9PSU5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00364363 PRIDE:E9PSU5
Ensembl:ENSRNOT00000022054 Uniprot:E9PSU5
Length = 363
Score = 265 (98.3 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 57/173 (32%), Positives = 93/173 (53%)
Query: 17 RKLFVGGLHRNTGEKEINDYFS-------QYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
RKLF+GGL T + + ++F ++G + + DP T +SRGF FVTY+ ++
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEGWRDGSEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEE 72
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFS 122
VD + A H + + ++PKR R + +K KIFVGG+ + E ++RDYF
Sbjct: 73 -VDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTGEYNLRDYFE 131
Query: 123 QYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+YG I + D+ K+GF F++FDD + D+++ I G +VK+
Sbjct: 132 KYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKK 184
Score = 168 (64.2 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 31/86 (36%), Positives = 50/86 (58%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +TGE + DYF +YG++E+I + D +G+ RGFAFVT+
Sbjct: 103 PGAHLTVKKIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHD 162
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
VD ++ H I + K+ +
Sbjct: 163 TVDKIVVQKYHTINGHNCEVKKALSK 188
Score = 48 (22.0 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 14/44 (31%), Positives = 16/44 (36%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKYREAAAY 342
GY G Y GY A GY ++GGG Y Y
Sbjct: 272 GYGGGG-PGYGNQGGGYGGGAGGYDGYNEGGNFGGGNYGGGGNY 314
Score = 45 (20.9 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 14/46 (30%), Positives = 18/46 (39%)
Query: 298 YGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGG-KYREAAAY 342
YG G Y A Y GY+ + +YGGG Y + Y
Sbjct: 280 YGNQGGGYGGGAGGYDGYNEGG-NFG----GGNYGGGGNYNDFGNY 320
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 248 (92.4 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 60/169 (35%), Positives = 91/169 (53%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
KLFVGG+ T + +YF ++GEV I D TG RGF FVT+ AV + +
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFA-DSAVAEKVLE 125
Query: 78 GDHYIGNKKIDPKRVTKRVNP---LKC-----KIFVGGLTTEITEQDVRDYFSQYGSITE 129
DH I ++K+D KR R + +K KIFVGGL + E ++++YF YG I E
Sbjct: 126 EDHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIE 185
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICG-KEVDVKRVK 177
Q +D +GF F++F ++ D++ + K G K+V++KR +
Sbjct: 186 HQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAE 234
Score = 166 (63.5 bits), Expect = 4.4e-13, Sum P(2) = 4.4e-13
Identities = 34/76 (44%), Positives = 50/76 (65%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RK+FVGGL E E+ +YF YG++ I D +TG+SRGF FVT+ T+ +VD L +
Sbjct: 157 RKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFS 216
Query: 77 AGD-HYIGNKKIDPKR 91
G H +G+K+++ KR
Sbjct: 217 DGKVHELGDKQVEIKR 232
Score = 65 (27.9 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 17/39 (43%), Positives = 19/39 (48%)
Query: 298 YGYTAGSYDAYATAYPGYDYSAMGYAYP-APATSYGGGK 335
YGY G + Y YS MG Y A A +YGGGK
Sbjct: 302 YGYGYGG-QMFNMGYGAGGYSHMGSGYGVAAAAAYGGGK 339
Score = 51 (23.0 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 18/44 (40%), Positives = 21/44 (47%)
Query: 298 YGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKYREAAA 341
YGY G Y Y Y G ++ MGY A S+ G Y AAA
Sbjct: 294 YGY-GGGY-GYGYGYGGQMFN-MGYG--AGGYSHMGSGYGVAAA 332
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 300 (110.7 bits), Expect = 2.4e-26, P = 2.4e-26
Identities = 65/173 (37%), Positives = 97/173 (56%)
Query: 5 ANGTAGPGRND-ERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFV 63
AN T+ RK F+GGL +T E+ + +F +YG + +I D TG+SRGF F+
Sbjct: 149 ANATSAESAGGPSRKCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFL 208
Query: 64 TYTTQKAVDDLLAAGDHYIGNKKIDPKRVTKRVNPLKC-KIFVGGLTTEITEQDVRDYFS 122
T+ K+VD LL H + K IDPKR + + K KIFVGG+ +TE++ ++FS
Sbjct: 209 TFEDAKSVDALLK-DRHVLDGKLIDPKRAISKEDQEKVGKIFVGGIDPMVTEEEFDNFFS 267
Query: 123 QYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
Q+G I + Q DK +GF F+++D D+V N + GK ++VKR
Sbjct: 268 QFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKVCVNKYLTLKGKAMEVKR 320
Score = 137 (53.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
K+FVGG+ E+E +++FSQ+G++ + D TG+SRGF FVTY + AVD +
Sbjct: 247 KIFVGGIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKVCVN 306
Query: 78 GDHYIGNKKIDPKRVTKR 95
+ K ++ KR R
Sbjct: 307 KYLTLKGKAMEVKRAAPR 324
>DICTYBASE|DDB_G0292422 [details] [associations]
symbol:DDB_G0292422 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0292422 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000190 KO:K14411
eggNOG:NOG289504 RefSeq:XP_629598.1 ProteinModelPortal:Q54D98
EnsemblProtists:DDB0233639 GeneID:8628658 KEGG:ddi:DDB_G0292422
InParanoid:Q54D98 OMA:YYEDESS Uniprot:Q54D98
Length = 687
Score = 288 (106.4 bits), Expect = 4.9e-26, Sum P(2) = 4.9e-26
Identities = 62/162 (38%), Positives = 96/162 (59%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEV-ESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
K+FVGGL + + + + DYFS +GEV ESI IK +SRGF FVT+ +D+++
Sbjct: 107 KIFVGGLLKTSSNEILKDYFSNFGEVKESIVIKATEKASKSRGFGFVTFVDPSVIDEVIL 166
Query: 77 AGDHYIGNKKIDPKRVTKRVN----PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQ 132
+H I K ++ +R + P K K+FVGGL IT D +YFS++G I+E+
Sbjct: 167 I-NHSIEGKNVEIRRAIPKEEMTEEPKKQKLFVGGLPKHITSDDFNNYFSEFGEISEYNL 225
Query: 133 PFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVK 174
+K+ +K GF FI F D++V + +L + +I GK VD++
Sbjct: 226 LTEKNGTIK-GFGFICFKDESVNEIILNEQQHIILGKRVDIR 266
Score = 119 (46.9 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 22/73 (30%), Positives = 42/73 (57%)
Query: 16 ERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLL 75
++KLFVGGL ++ + N+YFS++GE+ ++ + G +GF F+ + + + +L
Sbjct: 193 KQKLFVGGLPKHITSDDFNNYFSEFGEISEYNLLTEK-NGTIKGFGFICFKDESVNEIIL 251
Query: 76 AAGDHYIGNKKID 88
H I K++D
Sbjct: 252 NEQQHIILGKRVD 264
Score = 39 (18.8 bits), Expect = 4.9e-26, Sum P(2) = 4.9e-26
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 288 HQLLHMEEANYGYTAGSYDAYATAYPGYDYSAMGY 322
HQ H + N+ Y T YP YD++ Y
Sbjct: 576 HQQHHQQ--NHQQHQQQRAIYVT-YPQYDFNHQSY 607
>UNIPROTKB|I3LPG0 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:FP690339 Ensembl:ENSSSCT00000027694 Uniprot:I3LPG0
Length = 332
Score = 270 (100.1 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
Identities = 55/150 (36%), Positives = 86/150 (57%)
Query: 33 INDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPK-R 91
+ +YF Q+GE + + DP T +SRGF FVT+ Q VD +LA H + +K IDPK
Sbjct: 3 LREYFGQFGEEKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 62
Query: 92 VTKRVNPLKC----KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFI 147
+R P KIFVGGL+ T +DV+ YF Q+G + + FDK+ N +GF F+
Sbjct: 63 FPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFV 122
Query: 148 SFDDQNVADQVLKNPKQVICGKEVDVKRVK 177
+F+ +++ ++V + I K V+ K+ +
Sbjct: 123 TFESEDIVEKVCEIHFHEINNKMVECKKAQ 152
Score = 144 (55.7 bits), Expect = 9.5e-08, Sum P(2) = 9.5e-08
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGGL NT +++ YF Q+G+V+ + D T + RGF FVT+ ++ V+ +
Sbjct: 76 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 135
Query: 77 AGDHYIGNKKIDPKR 91
H I NK ++ K+
Sbjct: 136 IHFHEINNKMVECKK 150
Score = 38 (18.4 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 243 YDYSAMGYAYPAPAVQTMDTPL 264
Y A GY Y P + TPL
Sbjct: 199 YTGLAPGYTYQFPEFRVERTPL 220
>FB|FBgn0004237 [details] [associations]
symbol:Hrb87F "Heterogeneous nuclear ribonucleoprotein at
87F" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005703
"polytene chromosome puff" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0000785 "chromatin" evidence=IDA] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005737 GO:GO:0007067 GO:GO:0022008 GO:GO:0000166
GO:GO:0043565 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000785
GO:GO:0030529 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 KO:K12741 EMBL:X54803 EMBL:X58183
EMBL:X58184 EMBL:X59691 EMBL:X62636 EMBL:BT012315 PIR:A41732
PIR:S22315 RefSeq:NP_001163602.1 RefSeq:NP_476806.1
RefSeq:NP_476807.1 UniGene:Dm.1711 ProteinModelPortal:P48810
SMR:P48810 IntAct:P48810 MINT:MINT-296059 STRING:P48810
PaxDb:P48810 EnsemblMetazoa:FBtr0082851 EnsemblMetazoa:FBtr0300590
EnsemblMetazoa:FBtr0310621 GeneID:48535 KEGG:dme:Dmel_CG12749
CTD:48535 FlyBase:FBgn0004237 InParanoid:P48810 OMA:MENRDAK
OrthoDB:EOG46WWRF PhylomeDB:P48810 ChiTaRS:Hrb87F GenomeRNAi:48535
NextBio:839451 Bgee:P48810 GermOnline:CG12749 GO:GO:0035062
Uniprot:P48810
Length = 385
Score = 270 (100.1 bits), Expect = 8.2e-26, Sum P(2) = 8.2e-26
Identities = 58/167 (34%), Positives = 90/167 (53%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T + + +F ++G + + + DP T +SRGF F+TY+ +D+
Sbjct: 24 RKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQN 83
Query: 77 AGDHYIGNKKIDPKRVTKRV---NP-----LKCKIFVGGLTTEITEQDVRDYFSQYGSIT 128
A H I + ++PKR R +P +K K+FVGGL + E+ +R+YF +G I
Sbjct: 84 ARPHKIDGRTVEPKRAVPRQEIDSPNAGATVK-KLFVGGLRDDHDEECLREYFKDFGQIV 142
Query: 129 EFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
DK K+GF FI FDD + D+++ I K +DVK+
Sbjct: 143 SVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKK 189
Score = 37 (18.1 bits), Expect = 8.2e-26, Sum P(2) = 8.2e-26
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 299 GYTAGSYDAYATAYPGYDY--SAMGYAYPAPATSYGGG 334
G G + Y +Y G S G PAP + GGG
Sbjct: 311 GGGGGFGNEYQQSYGGGPQRNSNFGNNRPAPYSQGGGG 348
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 61/182 (33%), Positives = 98/182 (53%)
Query: 4 RANGTAG--PGRNDE-RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGF 60
R G G P ++ RKLF+GGL T + + ++F ++G + + DP T +SRGF
Sbjct: 19 RRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGF 78
Query: 61 AFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEIT 113
FVTY+ + VD + A H + + ++PKR R + +K KIFVGG+ +
Sbjct: 79 GFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTE 138
Query: 114 EQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDV 173
E ++RDYF +YG I + D+ K+GF F++FDD + D+++ I G +V
Sbjct: 139 EYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEV 198
Query: 174 KR 175
K+
Sbjct: 199 KK 200
Score = 160 (61.4 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF +YG++E+I + D +G+ RGFAFVT+
Sbjct: 119 PGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHD 178
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
VD ++ H I + K+ +
Sbjct: 179 TVDKIVVQKYHTINGHNCEVKKALSK 204
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 59/167 (35%), Positives = 94/167 (56%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F ++G + + + DP T +SRGF F+TY+ +D+
Sbjct: 31 RKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQK 90
Query: 77 AGDHYIGNKKIDPKRVTKRVN---P-----LKCKIFVGGLTTEITEQDVRDYFSQYGSIT 128
+ H I + ++PKR R + P +K K+FVG L + EQ +RDYF +G+I
Sbjct: 91 SRPHKIDGRVVEPKRAVPRQDIDSPNAGATVK-KLFVGALKDDHDEQSIRDYFQHFGNIV 149
Query: 129 EFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ DK K+GF F+ FDD + D+V+ + + GK VDVK+
Sbjct: 150 DINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKK 196
Score = 150 (57.9 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+KLFVG L + E+ I DYF +G + I+I D TG+ RGFAFV + VD ++
Sbjct: 122 KKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVL 181
Query: 77 AGDHYIGNKKIDPKRVTKRVN 97
H + K +D K+ + N
Sbjct: 182 QKQHQLNGKMVDVKKALPKQN 202
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 264 (98.0 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 57/166 (34%), Positives = 89/166 (53%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTYTT + VD +
Sbjct: 23 RKLFIGGLSFETTDESLRSHFEQWGMLTDCVVM-DPNTKRSRGFGFVTYTTVEEVDAAMN 81
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A + + ++PKR R + + KIFVGG+ + E +RDYF QYG I
Sbjct: 82 ARPQKMDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 141
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ G +V++
Sbjct: 142 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTGNGHNCEVRK 187
Score = 155 (59.6 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 32/75 (42%), Positives = 46/75 (61%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF QYG++E I I D +G+ RGFAFVT+
Sbjct: 106 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 165
Query: 70 AVDDLLAAGDHYIGN 84
+VD ++ H GN
Sbjct: 166 SVDKIVIQKYH-TGN 179
Score = 42 (19.8 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 294 EEANYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGK 335
+ +N+G G ++ P Y GY + ++SYG G+
Sbjct: 277 QSSNFGPMKGGNFGGRSSGP-YGDGEGGYGGSSSSSSYGSGR 317
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 57/166 (34%), Positives = 92/166 (55%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T + + ++F ++G + + DP T +SRGF FVTY+ + VD +
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + +K KIFVGG+ + E ++RDYF +YG I
Sbjct: 73 ARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIET 132
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ I G +VK+
Sbjct: 133 IEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKK 178
Score = 160 (61.4 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF +YG++E+I + D +G+ RGFAFVT+
Sbjct: 97 PGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHD 156
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
VD ++ H I + K+ +
Sbjct: 157 TVDKIVVQKYHTINGHNCEVKKALSK 182
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 294 (108.6 bits), Expect = 2.1e-25, P = 2.1e-25
Identities = 56/161 (34%), Positives = 96/161 (59%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
K+F+GGL+ +T E + +YF +YG V + I DP TG+SRGF F+++ +VD+++
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219
Query: 78 GDHYIGNKKIDPKRVTKRVNPLKC-KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDK 136
H + K IDPKR R K KIFVGG+ ++ ++ ++FSQ+G+I + Q DK
Sbjct: 220 -QHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK 278
Query: 137 SKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVK 177
+GF F+++D + D+V +N +++++KR +
Sbjct: 279 DTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAE 319
Score = 159 (61.0 bits), Expect = 7.5e-09, P = 7.5e-09
Identities = 28/75 (37%), Positives = 50/75 (66%)
Query: 101 CKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK 160
CK+F+GGL + TE ++R+YF +YG++T+ + D + +GF F+SF+ + D+V+K
Sbjct: 159 CKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK 218
Query: 161 NPKQVICGKEVDVKR 175
+ ++ GK +D KR
Sbjct: 219 T-QHILDGKVIDPKR 232
Score = 138 (53.6 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 31/78 (39%), Positives = 44/78 (56%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
K+FVGG+ + KE ++FSQ+G + + D TGQSRGF FVTY + AVD +
Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN 303
Query: 78 GDHYIGNKKIDPKRVTKR 95
++KI+ KR R
Sbjct: 304 KFIDFKDRKIEIKRAEPR 321
>ZFIN|ZDB-GENE-030912-14 [details] [associations]
symbol:hnrnpa1 "heterogeneous nuclear
ribonucleoprotein A1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030912-14 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 EMBL:BC044442 IPI:IPI00500189
RefSeq:NP_956398.1 UniGene:Dr.67768 ProteinModelPortal:Q803K3
SMR:Q803K3 STRING:Q803K3 PRIDE:Q803K3 GeneID:378453 KEGG:dre:378453
InParanoid:Q803K3 NextBio:20813776 ArrayExpress:Q803K3 Bgee:Q803K3
Uniprot:Q803K3
Length = 422
Score = 266 (98.7 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
Identities = 58/175 (33%), Positives = 91/175 (52%)
Query: 10 GPGRNDE--RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTT 67
G R E RKLF+GGL T + + +F Q+G + + DP T +SRGF FVTY++
Sbjct: 24 GQPREPEQLRKLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSS 83
Query: 68 QKAVDDLLAAGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDY 120
V+ + A H + + ++PKR R + K KIFVGG+ + E +RDY
Sbjct: 84 VDEVNASMDARPHKVDGRLVEPKRAVSREDSSKPFAHTTVKKIFVGGIKDDTEENHLRDY 143
Query: 121 FSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
F Q+G I + D K+GF F++FDD + D+++ + G +V++
Sbjct: 144 FDQFGKIEVVEIMVDHKTGNKRGFAFVTFDDHDSVDRIVIQKYHTVNGHNCEVRK 198
Score = 150 (57.9 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGG+ +T E + DYF Q+G++E + I D TG RGFAFVT+ +VD ++
Sbjct: 124 KKIFVGGIKDDTEENHLRDYFDQFGKIEVVEIMVDHKTGNKRGFAFVTFDDHDSVDRIVI 183
Query: 77 AGDHYIGNKKIDPKRVTKR 95
H + + ++ +
Sbjct: 184 QKYHTVNGHNCEVRKALSK 202
Score = 42 (19.8 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
Identities = 12/46 (26%), Positives = 15/46 (32%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKYREAAAY 342
N G G Y+ Y + G S GGG Y + Y
Sbjct: 326 NSGGGGGGYNNYNNGNGNFGGGNFGGGGGGGGNSGGGGNYNDFGNY 371
Score = 39 (18.8 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
Identities = 13/40 (32%), Positives = 15/40 (37%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKY 336
NYG G Y G+ Y G Y + GGG Y
Sbjct: 298 NYGGNRG-YGGGGGG--GHGYGNQGGGYGGGNSGGGGGGY 334
>UNIPROTKB|F1M6U1 [details] [associations]
symbol:F1M6U1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
Uniprot:F1M6U1
Length = 252
Score = 260 (96.6 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
Identities = 52/165 (31%), Positives = 87/165 (52%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
KLF+ GL T ++ + +F ++G + + DP T + RGF FVTYTT + VD + A
Sbjct: 8 KLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNA 67
Query: 78 GDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITEF 130
H + + ++PKR R + + KIFVG + + E +R+YF QYG I
Sbjct: 68 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGKIEVI 127
Query: 131 QQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ + G +V++
Sbjct: 128 EIMTDRGSGQKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 172
Score = 147 (56.8 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVG + +T E + +YF QYG++E I I D +GQ RGF FVT+
Sbjct: 91 PGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSGQKRGFVFVTFDDHD 150
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
+VD ++ H + + ++ +
Sbjct: 151 SVDKIVIQKYHTVNGHNCEVRKALSK 176
Score = 43 (20.2 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 293 MEEANYGY-TAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGG 334
M+ N+G ++GSY Y + GY + ++SYG G
Sbjct: 211 MKGGNFGSRSSGSYGG-GGQYFANPRNQGGYGGSSSSSSYGSG 252
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 56/166 (33%), Positives = 93/166 (56%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T + + ++F ++G + + DP T +SRGF FVTY+ + VD ++
Sbjct: 9 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 68
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + +K KIFVGG+ + E ++R+YF +YG I
Sbjct: 69 ARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIET 128
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ I G +VK+
Sbjct: 129 IEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKK 174
Score = 156 (60.0 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 29/86 (33%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + +YF +YG++E+I + D +G+ RGFAFVT+
Sbjct: 93 PGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHD 152
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
VD ++ H I + K+ +
Sbjct: 153 TVDKIVVQKYHTINGHNCEVKKALSK 178
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 64/167 (38%), Positives = 93/167 (55%)
Query: 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAV 71
G ++ KLFVGGL +T ++ + YFSQYGEV I D T QSRGF FV + V
Sbjct: 5 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 72 DDLLAAGDHYI-GNKKIDPKRVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEF 130
+LA+ H + G + P+ + N KIFVGG+ E ++R+YF ++G +TE
Sbjct: 65 GTVLASRPHTLDGRNQKGPRSDNSKSN----KIFVGGIPHNCGETELREYFKKFGVVTEV 120
Query: 131 QQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVK 177
+D K +GF FI+F+D+ DQ + I GK+V+VKR +
Sbjct: 121 VMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 167
Score = 147 (56.8 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 10 GPGRNDER--KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTT 67
GP ++ + K+FVGG+ N GE E+ +YF ++G V + + D + RGF F+T+
Sbjct: 82 GPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 141
Query: 68 QKAVDDLLAAGDHYIGNKKIDPKRVTKR 95
+++VD + H I KK++ KR R
Sbjct: 142 EQSVDQAVNMHFHDIMGKKVEVKRAEPR 169
>WB|WBGene00001999 [details] [associations]
symbol:hrp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0031581 "hemidesmosome assembly" evidence=IGI] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0030529
GO:GO:0040015 GO:GO:0000398 GO:GO:0000781 eggNOG:COG0724
GO:GO:0031581 GeneTree:ENSGT00700000104255 KO:K12741 EMBL:D10877
EMBL:FO081370 PIR:S35500 RefSeq:NP_001023199.1
RefSeq:NP_001040944.1 RefSeq:NP_001040945.1 RefSeq:NP_500326.2
UniGene:Cel.7537 ProteinModelPortal:Q22037 SMR:Q22037 IntAct:Q22037
STRING:Q22037 PaxDb:Q22037 PRIDE:Q22037 EnsemblMetazoa:F42A6.7a.1
EnsemblMetazoa:F42A6.7a.2 GeneID:177101 KEGG:cel:CELE_F42A6.7
UCSC:F42A6.7a.1 CTD:177101 WormBase:F42A6.7a WormBase:F42A6.7b
WormBase:F42A6.7c WormBase:F42A6.7d InParanoid:Q22037 OMA:YGGGWGQ
NextBio:895332 Uniprot:Q22037
Length = 346
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 60/179 (33%), Positives = 99/179 (55%)
Query: 6 NGTAGPGRNDE--RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFV 63
NG+ E RK+FVGGL NT + + +++SQ+GE+ I + DP T +SRGF FV
Sbjct: 10 NGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFV 69
Query: 64 TYTTQKAVDDLLAAGDHYIGNKKIDPKRVTKR-------VNPLKCKIFVGGLTTEITEQD 116
T++ + VD + H I K +DPKR R N +++V G+ + TE
Sbjct: 70 TFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDM 129
Query: 117 VRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ +YF++YG++T+ + DK+ +GF F++FDD + DQ + ++ G DV++
Sbjct: 130 LTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRK 188
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 262 (97.3 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
Identities = 57/165 (34%), Positives = 88/165 (53%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
KLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTY T + VD + A
Sbjct: 8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 78 GDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITEF 130
H + + ++PKR R + + KIFVG TE E +RDYF QYG I
Sbjct: 68 RPHKVDGRVVEPKRAVSREDSRRPGAHLTVKKIFVGE-DTE--EHHLRDYFEQYGKIEVI 124
Query: 131 QQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ + G +V++
Sbjct: 125 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 169
Score = 137 (53.3 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVG +T E + DYF QYG++E I I D +G+ RGFAFVT+
Sbjct: 91 PGAHLTVKKIFVG---EDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 147
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
+VD ++ H + + ++ +
Sbjct: 148 SVDKIVIQKYHTVNGHNCEVRKALSK 173
Score = 39 (18.8 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 318 SAMGYAYPAPATSYGGGK 335
S GY + ++SYG G+
Sbjct: 190 SGRGYGGSSSSSSYGSGR 207
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 57/166 (34%), Positives = 93/166 (56%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T + + ++F ++G + + DP T +SRGF FVTY+ ++ VD +
Sbjct: 13 RKLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEE-VDAAMC 71
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + +K KIFVGG+ + E ++RDYF +YG I
Sbjct: 72 ARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTGEYNLRDYFEKYGKIET 131
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ I G +VK+
Sbjct: 132 IEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKK 177
Score = 168 (64.2 bits), Expect = 8.8e-12, P = 8.8e-12
Identities = 31/86 (36%), Positives = 50/86 (58%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +TGE + DYF +YG++E+I + D +G+ RGFAFVT+
Sbjct: 96 PGAHLTVKKIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHD 155
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
VD ++ H I + K+ +
Sbjct: 156 TVDKIVVQKYHTINGHNCEVKKALSK 181
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 56/166 (33%), Positives = 91/166 (54%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKL +GGL T + + ++F ++G + + DP T +SRGF FVTY+ + VD +
Sbjct: 8 RKLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAVC 67
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + +K KIFVGG+ + E ++RDYF +YG I
Sbjct: 68 ARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIET 127
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D K+GF F++FDD + D+++ +I G +VK+
Sbjct: 128 IEVMEDSQSGKKRGFAFVTFDDHDTVDKIVDQKYHIINGHNCEVKK 173
Score = 160 (61.4 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF +YG++E+I + D +G+ RGFAFVT+
Sbjct: 92 PGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDSQSGKKRGFAFVTFDDHD 151
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
VD ++ H I + K+ +
Sbjct: 152 TVDKIVDQKYHIINGHNCEVKKALSK 177
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 57/166 (34%), Positives = 90/166 (54%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTY T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + + KIFVGG+ + E +RDYF QYG I
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ + G +V++
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179
Score = 157 (60.3 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF QYG++E I I D +G+ RGFAFVT+
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
+VD ++ H + + ++ +
Sbjct: 158 SVDKIVIQKYHTVNGHNCEVRKALSK 183
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 57/166 (34%), Positives = 90/166 (54%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTY T + VD +
Sbjct: 33 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 92
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + + KIFVGG+ + E +RDYF QYG I
Sbjct: 93 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 152
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ + G +V++
Sbjct: 153 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 198
Score = 157 (60.3 bits), Expect = 7.2e-10, P = 7.2e-10
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF QYG++E I I D +G+ RGFAFVT+
Sbjct: 117 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 176
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
+VD ++ H + + ++ +
Sbjct: 177 SVDKIVIQKYHTVNGHNCEVRKALSK 202
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 57/166 (34%), Positives = 90/166 (54%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTY T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + + KIFVGG+ + E +RDYF QYG I
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ + G +V++
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179
Score = 157 (60.3 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF QYG++E I I D +G+ RGFAFVT+
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
+VD ++ H + + ++ +
Sbjct: 158 SVDKIVIQKYHTVNGHNCEVRKALSK 183
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 57/170 (33%), Positives = 91/170 (53%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTY T + VD +
Sbjct: 7 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 66
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + + KIFVGG+ + E +RDYF QYG
Sbjct: 67 ARPHKVNGRVVEPKRAVSREDSQRPDAYLTVKKIFVGGIKEDTEEHHLRDYFGQYGKTEV 126
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFN 179
+ D+ K+GF F++FDD++ D+++ + G +V++ N
Sbjct: 127 IEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHTVNGHNCEVRKAPSN 176
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 251 (93.4 bits), Expect = 7.1e-25, Sum P(2) = 7.1e-25
Identities = 55/167 (32%), Positives = 90/167 (53%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T E+ + Y+ Q+GE+ + D + +SRG FVT+++ VD +A
Sbjct: 9 RKLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTEVDAAMA 68
Query: 77 AGDHYIGNKKIDPKRVTKRVNP--------LKCKIFVGGLTTEITEQDVRDYFSQYGSIT 128
A H I + ++P+R R LK K+FVGG+ + E +R+YF +YG I
Sbjct: 69 ARPHSIDGRVLEPRRAIPREASGQRGAHWTLK-KLFVGGIKEDTEEHHLREYFEKYGKID 127
Query: 129 EFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ I G +V++
Sbjct: 128 AIEIITDRQSGRKRGFGFVTFDDYDPVDKIVLQKYHAINGHHAEVRK 174
Score = 47 (21.6 bits), Expect = 7.1e-25, Sum P(2) = 7.1e-25
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 298 YGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKY 336
YG G+YD + Y G A YGGG Y
Sbjct: 275 YGNNFGNYDQQPSNYGPMRNGNFGVGRNK-AAPYGGGNY 312
Score = 41 (19.5 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 13/43 (30%), Positives = 16/43 (37%)
Query: 299 GYTAGSYDAYATAYPGY-----DYSAMGYAYPAPATSYGGGKY 336
GY G YPGY +Y+ G Y + GG Y
Sbjct: 234 GYGGGPGGGNFGGYPGYGGGGGEYAGRGPGY-GNQWEFSGGGY 275
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 54/133 (40%), Positives = 83/133 (62%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A + +E K+F+GGL +T +K++ DYFS++GEV ++K DP TG+SRGF FV +
Sbjct: 89 AATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 69 KAVDDLLAAGDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGS 126
++VD ++ +H + K IDPKR K P+K KIFVGGL+ + E+ +R+YF +G
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK-KIFVGGLSPDTPEEKIREYFGGFGE 207
Query: 127 ITEFQQPFDKSKN 139
+ + P D N
Sbjct: 208 VESIELPMDNKTN 220
Score = 143 (55.4 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GGL+ + T++D++DYFS++G + + D +GF F+ F + D+V+
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 162 PKQVICGKEVDVKRVK 177
+ + GK +D KR K
Sbjct: 158 KEHKLNGKVIDPKRAK 173
>UNIPROTKB|F1SCL3 [details] [associations]
symbol:LOC100522980 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123190.1 Ensembl:ENSSSCT00000014811 GeneID:100522980
KEGG:ssc:100522980 Uniprot:F1SCL3
Length = 354
Score = 253 (94.1 bits), Expect = 9.1e-25, Sum P(2) = 9.1e-25
Identities = 55/166 (33%), Positives = 90/166 (54%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T E+ + +Y+ Q+G++ + DP + +SRGF FV +++ VD +A
Sbjct: 21 RKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMA 80
Query: 77 AGDHYIGNKKIDPKRVTKRVN---PLKC----KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H I + + KRV R P C K+FVGG+ + TE+ +RDYF +YG+I
Sbjct: 81 ARPHSIDGRVVASKRVVPREESGKPGACVTTKKLFVGGIKEDTTERHLRDYFERYGTIDA 140
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ + K F F++FDD + D+++ I G +++
Sbjct: 141 IE--IIRQSGRKTAFGFVTFDDHDPVDKIVLQKYHTINGHHAQLEK 184
Score = 122 (48.0 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+KLFVGG+ +T E+ + DYF +YG +++I I +G+ F FVT+ VD ++
Sbjct: 112 KKLFVGGIKEDTTERHLRDYFERYGTIDAIEIIRQ--SGRKTAFGFVTFDDHDPVDKIVL 169
Query: 77 AGDHYIGNKKIDPKRVTKR 95
H I ++ R
Sbjct: 170 QKYHTINGHHAQLEKALSR 188
Score = 119 (46.9 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 28/88 (31%), Positives = 44/88 (50%)
Query: 89 PKRVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFIS 148
P + KR + K+F+GGL +E E+ +R+Y+ Q+G +T+ D S +GF F+
Sbjct: 9 PLKKKKRESEQFRKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVI 68
Query: 149 FDDQNVADQVLKNPKQVICGKEVDVKRV 176
F D + I G+ V KRV
Sbjct: 69 FSSVAEVDAAMAARPHSIDGRVVASKRV 96
Score = 44 (20.5 bits), Expect = 9.1e-25, Sum P(2) = 9.1e-25
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 299 GYTAGSYDAYATAYP--GYDYSAMGYAYPAPATSYGGGKYRE 338
G + G Y Y G YS + + +YGGG Y E
Sbjct: 257 GGSFGGCPGYGGGYGDRGAGYSNLSSGFGDGYGNYGGGDYGE 298
>UNIPROTKB|F1SCM6 [details] [associations]
symbol:LOC100522063 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123185.1 Ensembl:ENSSSCT00000014807 GeneID:100522063
KEGG:ssc:100522063 Uniprot:F1SCM6
Length = 354
Score = 253 (94.1 bits), Expect = 9.1e-25, Sum P(2) = 9.1e-25
Identities = 55/166 (33%), Positives = 90/166 (54%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T E+ + +Y+ Q+G++ + DP + +SRGF FV +++ VD +A
Sbjct: 21 RKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMA 80
Query: 77 AGDHYIGNKKIDPKRVTKRVN---PLKC----KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H I + + KRV R P C K+FVGG+ + TE+ +RDYF +YG+I
Sbjct: 81 ARPHSIDGRVVASKRVVPREESGKPGACVTTKKLFVGGIKEDTTERHLRDYFERYGTIDA 140
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ + K F F++FDD + D+++ I G +++
Sbjct: 141 IE--IIRQSGRKTAFGFVTFDDHDPVDKIVLQKYHTINGHHAQLEK 184
Score = 122 (48.0 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+KLFVGG+ +T E+ + DYF +YG +++I I +G+ F FVT+ VD ++
Sbjct: 112 KKLFVGGIKEDTTERHLRDYFERYGTIDAIEIIRQ--SGRKTAFGFVTFDDHDPVDKIVL 169
Query: 77 AGDHYIGNKKIDPKRVTKR 95
H I ++ R
Sbjct: 170 QKYHTINGHHAQLEKALSR 188
Score = 119 (46.9 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 28/88 (31%), Positives = 44/88 (50%)
Query: 89 PKRVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFIS 148
P + KR + K+F+GGL +E E+ +R+Y+ Q+G +T+ D S +GF F+
Sbjct: 9 PLKKKKRESEQFRKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVI 68
Query: 149 FDDQNVADQVLKNPKQVICGKEVDVKRV 176
F D + I G+ V KRV
Sbjct: 69 FSSVAEVDAAMAARPHSIDGRVVASKRV 96
Score = 44 (20.5 bits), Expect = 9.1e-25, Sum P(2) = 9.1e-25
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 299 GYTAGSYDAYATAYP--GYDYSAMGYAYPAPATSYGGGKYRE 338
G + G Y Y G YS + + +YGGG Y E
Sbjct: 257 GGSFGGCPGYGGGYGDRGAGYSNLSSGFGDGYGNYGGGDYGE 298
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 168 (64.2 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 31/74 (41%), Positives = 47/74 (63%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
KIFVGGL +T+++ R YF YG +T+ +D++ N +GF F+SFD ++ D VL
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK 170
Query: 162 PKQVICGKEVDVKR 175
+ GK+V+VKR
Sbjct: 171 TFHDLSGKQVEVKR 184
Score = 160 (61.4 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 33/95 (34%), Positives = 52/95 (54%)
Query: 5 ANGTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVT 64
+ + G N +K+FVGGL ++E YF YG V ++I D T + RGF FV+
Sbjct: 98 SRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVS 157
Query: 65 YTTQKAVDDLLAAGDHYIGNKKIDPKR-VTKRVNP 98
+ ++ AVD +L H + K+++ KR + K NP
Sbjct: 158 FDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANP 192
Score = 153 (58.9 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDD 73
+D+ KLFVGG+ T E ++ ++F+ YGEV + D TG+ RGF FV ++ +D
Sbjct: 3 SDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDR 62
Query: 74 LLAAGDHYIGNKKIDPKRVTKR 95
+L H I +++D KR R
Sbjct: 63 VLQE-KHSIDTREVDVKRAMSR 83
Score = 141 (54.7 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 31/80 (38%), Positives = 47/80 (58%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+FVGG++ E E +R++F+ YG +++ DK +GF F+ F D +V D+VL+
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 162 PKQVICGKEVDVKRVKFNPE 181
K I +EVDVKR E
Sbjct: 67 -KHSIDTREVDVKRAMSREE 85
Score = 56 (24.8 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 17/34 (50%), Positives = 17/34 (50%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYG 332
GY GS A AY GY SA GY A A YG
Sbjct: 247 GYGNGSNGAGYGAYGGYTGSAGGYGAGATA-GYG 279
Score = 42 (19.8 bits), Expect = 3.1e-23, Sum P(3) = 3.1e-23
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 298 YGYTAGSYDAYATAYPGYDYSAMGYAYPAPATS-YGGG 334
YG SYD + + ++G P+ +S YG G
Sbjct: 210 YGGNESSYDGRMDSNRFLQHQSVGNGLPSYGSSGYGAG 247
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 289 (106.8 bits), Expect = 1.3e-24, P = 1.3e-24
Identities = 58/164 (35%), Positives = 95/164 (57%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
KLFVGGL T ++ +YF+ +G V + I DP T +SRGF F+T+ V+ +L
Sbjct: 204 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKV 263
Query: 78 GDHYIGNKKIDPKRVTKRVNPLKC----KIFVGGLTTEITEQDVRDYFSQYGSITEFQQP 133
H + KKIDPK T + P + KIFVGG++ + + ++V+ YFSQ+G + E
Sbjct: 264 PIHTLDGKKIDPKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVML 323
Query: 134 FDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVK 177
D+ +GF F++F++++V D+V + I K+V+ K+ +
Sbjct: 324 MDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQ 367
Score = 162 (62.1 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 38/105 (36%), Positives = 58/105 (55%)
Query: 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDD 73
N +K+FVGG+ ++T +E+ YFSQ+G VE + D T + RGF FVT+ + VD
Sbjct: 288 NKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDR 347
Query: 74 LLAAGDHYIGNKKID-----PKR-VTKRVNPLKCKIFVGGLTTEI 112
+ H I NKK++ PK VT L+ +I +G L ++
Sbjct: 348 VCEIHFHTIKNKKVECKKAQPKEAVTPAAQLLQKRIMLGTLGVQL 392
Score = 131 (51.2 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 25/78 (32%), Positives = 46/78 (58%)
Query: 97 NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVAD 156
+P K+FVGGL+ + + +++YF+ +G++T+ D +GF FI+F + +
Sbjct: 199 DPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVE 258
Query: 157 QVLKNPKQVICGKEVDVK 174
+VLK P + GK++D K
Sbjct: 259 KVLKVPIHTLDGKKIDPK 276
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 246 (91.7 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
Identities = 55/165 (33%), Positives = 91/165 (55%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
KLFVGGL+ T + + ++F QYG++ + + +SR F FVTY++ D ++A
Sbjct: 11 KLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAMSA 70
Query: 78 GDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITEF 130
H + ++ KR R + K KIF+GGL +I E +RD FSQ+G++ +
Sbjct: 71 RPHILDGNNVELKRAVAREDAGKPEALAKVKKIFIGGLKDDIEEDHLRDCFSQFGAVEKA 130
Query: 131 QQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ DK K+GF F+ F+D + AD+ + +I G +V+VK+
Sbjct: 131 EVITDKETGKKRGFGFVYFEDNDSADKAVVLKFHMINGHKVEVKK 175
Score = 138 (53.6 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+F+GGL + E + D FSQ+G VE + D TG+ RGF FV + + D +
Sbjct: 101 KKIFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFEDNDSADKAVV 160
Query: 77 AGDHYIGNKKIDPKR-VTKR 95
H I K++ K+ +TK+
Sbjct: 161 LKFHMINGHKVEVKKALTKQ 180
Score = 125 (49.1 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 23/84 (27%), Positives = 46/84 (54%)
Query: 92 VTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDD 151
+T ++ CK+FVGGL + T+ +R++F QYG +T+ ++ + F F+++
Sbjct: 1 MTAQMENQLCKLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSS 60
Query: 152 QNVADQVLKNPKQVICGKEVDVKR 175
+ AD + ++ G V++KR
Sbjct: 61 PDEADSAMSARPHILDGNNVELKR 84
Score = 49 (22.3 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
Identities = 15/41 (36%), Positives = 15/41 (36%)
Query: 298 YG-YTAGSY---DAYATAYPGYDYSAMGYAYPAPATSYGGG 334
YG Y G Y D Y Y G G Y YGGG
Sbjct: 215 YGNYGGGGYGGNDGYGGGYGGGYGGGYGGGYGDQMEGYGGG 255
Score = 45 (20.9 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
Identities = 17/51 (33%), Positives = 21/51 (41%)
Query: 299 GYTAGSYDAYATAYPGYD-YSAMGYAYPAPATSYGG--GKY--REAAAYPR 344
GY G Y Y G + Y+ G Y ++ YG G Y R A Y R
Sbjct: 240 GY-GGGYGDQMEGYGGGNGYNDFGSGYGQQSSGYGPMKGNYSGRSNAPYSR 289
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 57/171 (33%), Positives = 90/171 (52%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTY T + VD +
Sbjct: 10 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 69
Query: 77 AGDHYIGNKKIDPKR---VTKRVNP---LKCKIFVGGLTTEITEQDVRDYFSQYGSITEF 130
A H + + ++PKR + P L KIFVG + + E +RDYF QYG
Sbjct: 70 ARPHKVDGRVVEPKRAVSIEDSQRPGAYLNMKIFVGAIKEDTEEHHLRDYFGQYGKTEVI 129
Query: 131 QQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFNPE 181
+ D+ K+GF F++FDD++ D+++ + G +V++ E
Sbjct: 130 EIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHTVNGHNCEVRKAPSKQE 180
Score = 150 (57.9 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKA 70
PG K+FVG + +T E + DYF QYG+ E I I D +G+ RGFAFVT+ + +
Sbjct: 94 PGAYLNMKIFVGAIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDS 153
Query: 71 VDDLLAAGDHYIGNKKIDPKRVTKR 95
VD ++ H + + ++ +
Sbjct: 154 VDKIVIQKYHTVNGHNCEVRKAPSK 178
>UNIPROTKB|F1PVY3 [details] [associations]
symbol:F1PVY3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027434 Uniprot:F1PVY3
Length = 301
Score = 252 (93.8 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 56/166 (33%), Positives = 91/166 (54%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+KLF+GGL T ++ + +F ++G + + DP T +SRGF FVTY T + VD +
Sbjct: 14 QKLFIGGLSFETTDESLRSHF-EWGTLTGCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 72
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + KIFVGG+ E TE +RDYF +YG I
Sbjct: 73 ARPHKVDGRVVEPKRAVSREDSQTLDAHLTVKKIFVGGIK-ENTEDHLRDYF-EYGKIEV 130
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D++++ + G +V++
Sbjct: 131 IEIMTDRGSGKKRGFTFVTFDDHDSVDKIIQK-YHTVNGHNCEVRK 175
Score = 41 (19.5 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 318 SAMGYA-YPAPATSYGGGKYREAAAY 342
S GY+ + +++GGG Y + Y
Sbjct: 222 SGDGYSGFGNDGSNFGGGSYNDFGTY 247
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 55/166 (33%), Positives = 93/166 (56%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTY++ VD +
Sbjct: 38 RKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVDAAMD 97
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + K K+FVGG+ + E+ +R+YF Q+G I E
Sbjct: 98 ARPHKVDGRAVEPKRAVSREDSSKPGAHSTVKKMFVGGIKEDTDEEHLREYFGQFGKIDE 157
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+K+ + ++GF FI+FDD + D+++ + G +V++
Sbjct: 158 VNIMTEKNSDKRRGFAFITFDDHDAVDRIVIQKYHTVNGHNCEVRK 203
Score = 147 (56.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 25/86 (29%), Positives = 50/86 (58%)
Query: 11 PGRNDE-RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E+ + +YF Q+G+++ ++I + + + RGFAF+T+
Sbjct: 122 PGAHSTVKKMFVGGIKEDTDEEHLREYFGQFGKIDEVNIMTEKNSDKRRGFAFITFDDHD 181
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
AVD ++ H + + ++ R
Sbjct: 182 AVDRIVIQKYHTVNGHNCEVRKALSR 207
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 54/145 (37%), Positives = 83/145 (57%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + +F Q+G + + DP T +SRGF FVTY T + VD +
Sbjct: 14 RKLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 77 AGDHYIGNKKIDPKRVTKRVNP--LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPF 134
A H + + ++P+R R + L KIFVGG+ + E +RDY QYG I +
Sbjct: 74 ARPHKVDGRVVEPERAVSREDSHSLTVKIFVGGIKEDTEEHYLRDYSEQYGKIEVIEIMT 133
Query: 135 DKSKNMKKGFCFISFDDQNVADQVL 159
D+ K+GF F++FDD + D+++
Sbjct: 134 DRGSGKKRGFAFVTFDDYDSVDKIV 158
Score = 146 (56.5 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
K+FVGG+ +T E + DY QYG++E I I D +G+ RGFAFVT+ +VD ++
Sbjct: 101 KIFVGGIKEDTEEHYLRDYSEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDYDSVDKIVIR 160
Query: 78 GDHYIGNKKIDPKRVTKR 95
H + + K ++K+
Sbjct: 161 KYHTVNDHNCVRKALSKQ 178
Score = 114 (45.2 bits), Expect = 0.00027, P = 0.00027
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GGLT E T++ +R +F Q+G++TE D + +GF F+++ D +
Sbjct: 15 KLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 162 PKQVICGKEVDVKR 175
+ G+ V+ +R
Sbjct: 75 RPHKVDGRVVEPER 88
>UNIPROTKB|F1PGQ0 [details] [associations]
symbol:F1PGQ0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03010176
Ensembl:ENSCAFT00000005615 OMA:RRYQRIT Uniprot:F1PGQ0
Length = 318
Score = 252 (93.8 bits), Expect = 6.2e-24, Sum P(2) = 6.2e-24
Identities = 56/165 (33%), Positives = 86/165 (52%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
KLF+GGL T E+ + +F Q+G + DP T +SRG F+ Y T + VD + A
Sbjct: 15 KLFIGGLSFETTEESLRSHFEQWGTFTDCVVMRDPNTKRSRGVGFLMYATVEEVDAAMNA 74
Query: 78 GDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITEF 130
H G + ++PKR R + + KIFVGG+ + E +RDYF QYG I
Sbjct: 75 RPHVDG-RVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 133
Query: 131 QQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ KKGF F++FDD + D+++ + G +V++
Sbjct: 134 EIMTDRGSG-KKGFAFVTFDDHDSVDKIVIQKYHPVNGHSCEVRK 177
Score = 144 (55.7 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 29/86 (33%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF QYG++E I I D +G+ +GFAFVT+
Sbjct: 97 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK-KGFAFVTFDDHD 155
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
+VD ++ H + + ++ +
Sbjct: 156 SVDKIVIQKYHPVNGHSCEVRKALSK 181
Score = 37 (18.1 bits), Expect = 6.2e-24, Sum P(2) = 6.2e-24
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 293 MEEANYG-YTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGK 335
M+ N+G ++G Y Y + GY ++SYG G+
Sbjct: 274 MKGENFGGRSSGPYGG-GGQYFVKPLNQGGYGRSVSSSSYGSGR 316
>UNIPROTKB|F1NCI5 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006954 "inflammatory
response" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0032496 "response to lipopolysaccharide" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:EDNQHAL EMBL:AADN02028465
IPI:IPI00573116 Ensembl:ENSGALT00000009947 Uniprot:F1NCI5
Length = 328
Score = 241 (89.9 bits), Expect = 6.2e-24, Sum P(2) = 6.2e-24
Identities = 58/183 (31%), Positives = 93/183 (50%)
Query: 2 SYRANGTAGPGRNDER--KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRG 59
S A G G + + KLF+GGL+ T E + ++F+ YG + + +P T +SR
Sbjct: 11 SLSARPRRGTGMENSQLCKLFIGGLNVQTTEAGLREHFAAYGTLTDCVVVLNPQTKRSRC 70
Query: 60 FAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEI 112
F FVTY+ + D +AA H + ++ KR R + K K+FVGGL ++
Sbjct: 71 FGFVTYSAVEEADAAMAASPHAVDGNSVELKRAVSREDSAKPGAHAKVKKLFVGGLKGDV 130
Query: 113 TEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVD 172
E D+ +FSQ+G + + + DK K+GF F+ F + + AD+ I G V+
Sbjct: 131 GEGDLVQHFSQFGPVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVE 190
Query: 173 VKR 175
VK+
Sbjct: 191 VKK 193
Score = 142 (55.0 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 31/89 (34%), Positives = 48/89 (53%)
Query: 8 TAGPGRNDE-RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYT 66
+A PG + + +KLFVGGL + GE ++ +FSQ+G VE I D +G+ RGF FV +
Sbjct: 109 SAKPGAHAKVKKLFVGGLKGDVGEGDLVQHFSQFGPVEKAEIIADKQSGKKRGFGFVYFQ 168
Query: 67 TQKAVDDLLAAGDHYIGNKKIDPKRVTKR 95
A D H I +++ K+ +
Sbjct: 169 NHDAADKAAVVKFHPIQGHRVEVKKAVPK 197
Score = 48 (22.0 bits), Expect = 6.2e-24, Sum P(2) = 6.2e-24
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 297 NYGYTAGSYDAYATAYPGY-DYSAMGYAYPAPATSYGGG 334
+YG G D Y Y G+ YS +Y P S GGG
Sbjct: 262 SYGGGGGGGD-YGNGYGGFGSYSQHQSSY-GPMKSGGGG 298
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 173 (66.0 bits), Expect = 1.1e-23, Sum P(3) = 1.1e-23
Identities = 37/84 (44%), Positives = 48/84 (57%)
Query: 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAV 71
G ++ KLFVGGL +T ++ + YFSQYGEV I D T QSRGF FV + V
Sbjct: 5 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 72 DDLLAAGDHYIGNKKIDPKRVTKR 95
+LA+ H + + IDPK T R
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTPR 88
Score = 154 (59.3 bits), Expect = 1.1e-23, Sum P(3) = 1.1e-23
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
KIFVGG+ E ++R+YF ++G +TE +D K +GF FI+F+D+ DQ +
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 162 PKQVICGKEVDVKRVK 177
I GK+V+VKR +
Sbjct: 174 HFHDIMGKKVEVKRAE 189
Score = 147 (56.8 bits), Expect = 9.6e-08, Sum P(2) = 9.6e-08
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 10 GPGRNDER--KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTT 67
GP ++ + K+FVGG+ N GE E+ +YF ++G V + + D + RGF F+T+
Sbjct: 104 GPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 163
Query: 68 QKAVDDLLAAGDHYIGNKKIDPKRVTKR 95
+++VD + H I KK++ KR R
Sbjct: 164 EQSVDQAVNMHFHDIMGKKVEVKRAEPR 191
Score = 145 (56.1 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+FVGGL T++ +R YFSQYG + + DK+ N +GF F+ F D N VL +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 162 PKQVICGKEVDVK 174
+ G+ +D K
Sbjct: 71 RPHTLDGRNIDPK 83
Score = 38 (18.4 bits), Expect = 1.1e-23, Sum P(3) = 1.1e-23
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 310 TAYPGYDYSAMGY 322
TA P + YS GY
Sbjct: 339 TAQPDFPYSQYGY 351
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 170 (64.9 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
Identities = 36/78 (46%), Positives = 45/78 (57%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
KLFVGGL +T ++ + YFSQYGEV I D T QSRGF FV + V +LA+
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 78 GDHYIGNKKIDPKRVTKR 95
H + + IDPK T R
Sbjct: 61 RPHTLDGRNIDPKPCTPR 78
Score = 154 (59.3 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
KIFVGG+ E ++R+YF ++G +TE +D K +GF FI+F+D+ DQ +
Sbjct: 104 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 163
Query: 162 PKQVICGKEVDVKRVK 177
I GK+V+VKR +
Sbjct: 164 HFHDIMGKKVEVKRAE 179
Score = 147 (56.8 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 10 GPGRNDER--KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTT 67
GP ++ + K+FVGG+ N GE E+ +YF ++G V + + D + RGF F+T+
Sbjct: 94 GPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 153
Query: 68 QKAVDDLLAAGDHYIGNKKIDPKRVTKR 95
+++VD + H I KK++ KR R
Sbjct: 154 EQSVDQAVNMHFHDIMGKKVEVKRAEPR 181
Score = 145 (56.1 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+FVGGL T++ +R YFSQYG + + DK+ N +GF F+ F D N VL +
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 162 PKQVICGKEVDVK 174
+ G+ +D K
Sbjct: 61 RPHTLDGRNIDPK 73
Score = 41 (19.5 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 310 TAYPGYDYSAMGYAYPAPATSYGGG 334
TA P + YS GY S+G G
Sbjct: 329 TAQPDFPYSQYGYGQDL--ASFGQG 351
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 170 (64.9 bits), Expect = 1.6e-23, Sum P(3) = 1.6e-23
Identities = 36/78 (46%), Positives = 45/78 (57%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
KLFVGGL +T ++ + YFSQYGEV I D T QSRGF FV + V +LA+
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 78 GDHYIGNKKIDPKRVTKR 95
H + + IDPK T R
Sbjct: 61 RPHTLDGRNIDPKPCTPR 78
Score = 154 (59.3 bits), Expect = 1.6e-23, Sum P(3) = 1.6e-23
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
KIFVGG+ E ++R+YF ++G +TE +D K +GF FI+F+D+ DQ +
Sbjct: 104 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 163
Query: 162 PKQVICGKEVDVKRVK 177
I GK+V+VKR +
Sbjct: 164 HFHDIMGKKVEVKRAE 179
Score = 149 (57.5 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDD 73
N K+FVGG+ N GE E+ +YF ++G V + + D + RGF F+T+ +++VD
Sbjct: 100 NKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 159
Query: 74 LLAAGDHYIGNKKIDPKRVTKR 95
+ H I KK++ KR R
Sbjct: 160 AVNMHFHDIMGKKVEVKRAEPR 181
Score = 145 (56.1 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+FVGGL T++ +R YFSQYG + + DK+ N +GF F+ F D N VL +
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 162 PKQVICGKEVDVK 174
+ G+ +D K
Sbjct: 61 RPHTLDGRNIDPK 73
Score = 40 (19.1 bits), Expect = 1.6e-23, Sum P(3) = 1.6e-23
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 310 TAYPGYDYSAMGYAYPAPATSYGGGKYREAAAYPRHAPY 348
TA P + YS GY + +G G + + + P PY
Sbjct: 331 TAQPEFPYSQFGYGQDL--SGFGQG-FSDPSQQP--PPY 364
>UNIPROTKB|E2RF95 [details] [associations]
symbol:E2RF95 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03008728
Ensembl:ENSCAFT00000001067 OMA:CTTATVE Uniprot:E2RF95
Length = 308
Score = 236 (88.1 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 53/168 (31%), Positives = 84/168 (50%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ--KAVDDL 74
RKLF+GGL + + + Q+G + ++ DP T SRGF F+T TT + VD
Sbjct: 14 RKLFIGGLSLEITNESLRSHSEQWGMLTDRVVRRDPNTKGSRGFGFITCTTATVEEVDAA 73
Query: 75 LAAGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSI 127
+ A H + + ++PKR R + + K FVGG+ + E +RDYF QYG I
Sbjct: 74 MNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKTFVGGIKEDTEEHHLRDYFEQYGKI 133
Query: 128 TEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D K+ F F++FDD + D+++ + G +VK+
Sbjct: 134 EVIEIMIDPGSG-KRSFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVKK 180
Score = 148 (57.2 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 31/86 (36%), Positives = 48/86 (55%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K FVGG+ +T E + DYF QYG++E I I DP +G+ R FAFVT+
Sbjct: 100 PGAHLTVKKTFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMIDPGSGK-RSFAFVTFDDHD 158
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
+VD ++ H + + K+ +
Sbjct: 159 SVDKIVIQKYHTVNGHNCEVKKALSK 184
Score = 47 (21.6 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 294 EEANYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGK 335
+ +N+G T G ++ P Y Y + ++SYGGG+
Sbjct: 268 QSSNFGPTKGGNFGGRSSGP---YGGGDYGGSSNSSSYGGGR 306
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 172 (65.6 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
Identities = 37/84 (44%), Positives = 48/84 (57%)
Query: 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAV 71
G ++ KLFVGGL +T ++ + YFSQYGEV I D T QSRGF FV + V
Sbjct: 5 GGDEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 72 DDLLAAGDHYIGNKKIDPKRVTKR 95
+LA+ H + + IDPK T R
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTPR 88
Score = 155 (59.6 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
Identities = 33/95 (34%), Positives = 55/95 (57%)
Query: 83 GNKKIDPKRVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKK 142
G ++ +P+ R N KIFVGG+ E ++++YF+++G +TE +D K +
Sbjct: 100 GWQQKEPRTENSRSN----KIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPR 155
Query: 143 GFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVK 177
GF FI+F+D+ DQ + I GK+V+VKR +
Sbjct: 156 GFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 190
Score = 145 (56.1 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+FVGGL T++ +R YFSQYG + + DK+ N +GF F+ F D N VL +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 162 PKQVICGKEVDVK 174
+ G+ +D K
Sbjct: 71 RPHTLDGRNIDPK 83
Score = 145 (56.1 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
K+FVGG+ N GE E+ +YF+++G V + + D + RGF F+T+ +++VD +
Sbjct: 115 KIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 174
Query: 78 GDHYIGNKKIDPKRVTKR 95
H I KK++ KR R
Sbjct: 175 HFHDIMGKKVEVKRAEPR 192
>UNIPROTKB|F1Q2T4 [details] [associations]
symbol:F1Q2T4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03026834
Ensembl:ENSCAFT00000030325 Uniprot:F1Q2T4
Length = 290
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 58/166 (34%), Positives = 88/166 (53%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T + + +F Q+G + + DP T SRGF FVTY T K VD A
Sbjct: 14 RKLFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVTYATVKEVD---A 70
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + + KIFVGG+ + E +RDYF QYG I
Sbjct: 71 ARSHKVDGRVVEPKRAVSREDSQRPGAHLTVRKIFVGGIKEDTEEHHLRDYFKQYGKIEV 130
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF ++FDD + D+++ ++ G +V++
Sbjct: 131 IEIMTDRGSGKKRGFASVTFDDHD-KDKIVIQKYYIVNGHNCEVRK 175
Score = 140 (54.3 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 31/75 (41%), Positives = 43/75 (57%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + RK+FVGG+ +T E + DYF QYG++E I I D +G+ RGFA VT+
Sbjct: 95 PGAHLTVRKIFVGGIKEDTEEHHLRDYFKQYGKIEVIEIMTDRGSGKKRGFASVTFDDHD 154
Query: 70 AVDDLLAAGDHYIGN 84
D + +YI N
Sbjct: 155 K--DKIVIQKYYIVN 167
>UNIPROTKB|F1SHL4 [details] [associations]
symbol:F1SHL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU468866 Ensembl:ENSSSCT00000002164 OMA:QYGTIVE Uniprot:F1SHL4
Length = 280
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 60/162 (37%), Positives = 97/162 (59%)
Query: 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDL 74
+E K+FVG L + +K++ +YF+++GEV +IK DP TG+SRGF FV +V+ +
Sbjct: 70 EEGKMFVGDLSWSNRKKDLKNYFTKFGEVIDCTIKMDPNTGRSRGFGFVLIKDAASVEKI 129
Query: 75 LAAGDHYIGNKKIDPKRVTKRVN-PLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQP 133
L +H + IDP++ N P+K KIFVG L E TE++ RD F ++G I + P
Sbjct: 130 LDQKEHRLNGDVIDPEKAKVMKNDPVK-KIFVG-LNPEATEKN-RD-FGEFGEIEAIELP 185
Query: 134 FDKSKNMKKGFCFISF-DDQNVADQVLKNPKQVICGKEVDVK 174
D N ++GF FI+F +++ +VL+ I G++ ++K
Sbjct: 186 MDPKSNKRRGFVFITFKEEEEPVKKVLEKKFHTISGRKCEIK 227
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 225 (84.3 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
Identities = 50/165 (30%), Positives = 89/165 (53%)
Query: 16 ERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLL 75
ERKL V G+ + + DY S++G++E + D TG+SRGF +VT+ + + + L
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL 61
Query: 76 AAGDHYIGNKKIDPKRVTKRVN---PLK--CKIFVGGLTTEITEQDVRDYFSQYGSITEF 130
G+H++GN+ ++ K T + P K +IFV + + ++E D R +F +YG IT+
Sbjct: 62 K-GEHFLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDL 120
Query: 131 QQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
P D + +G FI+F + + ++++ + G V V R
Sbjct: 121 YMPKDYNSKQHRGIGFITFSSADSVEDLMEDTHD-LGGTTVAVDR 164
Score = 143 (55.4 bits), Expect = 8.8e-08, Sum P(2) = 8.8e-08
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
KIFVG L E + D+RDYF ++G I + P D ++ +GF F++F + VAD+V +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 162 PKQVICGKEVDV 173
+ ICG+EV +
Sbjct: 301 SHE-ICGQEVAI 311
Score = 114 (45.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
K+FVG L + ++ DYF ++G ++ I DP RGF FVT+ + V D +A
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFA-ENGVADRVAR 299
Query: 78 GDHYIGNKKI 87
H I +++
Sbjct: 300 RSHEICGQEV 309
Score = 64 (27.6 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYA--YPAPATSYGGGK 335
GY G+YDAY +A Y+A+G Y PAT YG G+
Sbjct: 198 GY--GAYDAYISA--ATRYAALGAPTLYDNPATFYGRGE 232
Score = 42 (19.8 bits), Expect = 5.9e-21, Sum P(2) = 5.9e-21
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKYR 337
GY G A+ Y G GY P S +YR
Sbjct: 340 GY-GGPMRAFGRMYGGMSLDDWGYGMPNARPSRPDRRYR 377
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 57/168 (33%), Positives = 91/168 (54%)
Query: 14 NDE-RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVD 72
N++ RKLF+GGL T E+ + +Y+ Q+GE+ + + +SRGF FVT+++ VD
Sbjct: 17 NEQIRKLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTFSSVAEVD 76
Query: 73 DLLAAGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYG 125
+AA H I + +DPKR R K K+FVGG+ + E +R+YF +YG
Sbjct: 77 AAMAARPHSIDGRVVDPKRAVSREKSEKQGSLVNVKKLFVGGIKEDTEEHHLREYFEKYG 136
Query: 126 SITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDV 173
I + D+ K+GF F++FDD + D+++ I G +V
Sbjct: 137 KIDAIEIITDRQSGKKRGFGFVTFDDYDPVDKIMLQKYHAINGHRAEV 184
Score = 146 (56.5 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+KLFVGG+ +T E + +YF +YG++++I I D +G+ RGF FVT+ VD ++
Sbjct: 112 KKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGKKRGFGFVTFDDYDPVDKIML 171
Query: 77 AGDHYIGNKKIDPKRVTKR 95
H I + + + R
Sbjct: 172 QKYHAINGHRAEVGKALSR 190
Score = 124 (48.7 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 27/91 (29%), Positives = 48/91 (52%)
Query: 85 KKIDPKRVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGF 144
K + KR K ++ K+F+GGL++E TE+ +++Y+ Q+G +T+ + +GF
Sbjct: 6 KSVPVKREKKENEQIR-KLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGF 64
Query: 145 CFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
F++F D + I G+ VD KR
Sbjct: 65 GFVTFSSVAEVDAAMAARPHSIDGRVVDPKR 95
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 173 (66.0 bits), Expect = 4.6e-23, Sum P(2) = 4.6e-23
Identities = 37/84 (44%), Positives = 48/84 (57%)
Query: 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAV 71
G ++ KLFVGGL +T ++ + YFSQYGEV I D T QSRGF FV + V
Sbjct: 5 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 72 DDLLAAGDHYIGNKKIDPKRVTKR 95
+LA+ H + + IDPK T R
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTPR 88
Score = 154 (59.3 bits), Expect = 4.6e-23, Sum P(2) = 4.6e-23
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
KIFVGG+ E ++R+YF ++G +TE +D K +GF FI+F+D+ DQ +
Sbjct: 113 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 172
Query: 162 PKQVICGKEVDVKRVK 177
I GK+V+VKR +
Sbjct: 173 HFHDIMGKKVEVKRAE 188
Score = 150 (57.9 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 33/92 (35%), Positives = 51/92 (55%)
Query: 7 GTAGPGRNDE---RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFV 63
G GP R+D K+FVGG+ N GE E+ +YF ++G V + + D + RGF F+
Sbjct: 100 GWKGP-RSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFI 158
Query: 64 TYTTQKAVDDLLAAGDHYIGNKKIDPKRVTKR 95
T+ +++VD + H I KK++ KR R
Sbjct: 159 TFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 190
Score = 145 (56.1 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+FVGGL T++ +R YFSQYG + + DK+ N +GF F+ F D N VL +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 162 PKQVICGKEVDVK 174
+ G+ +D K
Sbjct: 71 RPHTLDGRNIDPK 83
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 173 (66.0 bits), Expect = 4.7e-23, Sum P(2) = 4.7e-23
Identities = 37/84 (44%), Positives = 48/84 (57%)
Query: 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAV 71
G ++ KLFVGGL +T ++ + YFSQYGEV I D T QSRGF FV + V
Sbjct: 5 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 72 DDLLAAGDHYIGNKKIDPKRVTKR 95
+LA+ H + + IDPK T R
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTPR 88
Score = 154 (59.3 bits), Expect = 4.7e-23, Sum P(2) = 4.7e-23
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
KIFVGG+ E ++R+YF ++G +TE +D K +GF FI+F+D+ DQ +
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 162 PKQVICGKEVDVKRVK 177
I GK+V+VKR +
Sbjct: 174 HFHDIMGKKVEVKRAE 189
Score = 147 (56.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 32/89 (35%), Positives = 50/89 (56%)
Query: 10 GPGRNDE---RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYT 66
GP R+D K+FVGG+ N GE E+ +YF ++G V + + D + RGF F+T+
Sbjct: 104 GP-RSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFE 162
Query: 67 TQKAVDDLLAAGDHYIGNKKIDPKRVTKR 95
+++VD + H I KK++ KR R
Sbjct: 163 DEQSVDQAVNMHFHDIMGKKVEVKRAEPR 191
Score = 145 (56.1 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+FVGGL T++ +R YFSQYG + + DK+ N +GF F+ F D N VL +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 162 PKQVICGKEVDVK 174
+ G+ +D K
Sbjct: 71 RPHTLDGRNIDPK 83
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 173 (66.0 bits), Expect = 4.7e-23, Sum P(2) = 4.7e-23
Identities = 37/84 (44%), Positives = 48/84 (57%)
Query: 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAV 71
G ++ KLFVGGL +T ++ + YFSQYGEV I D T QSRGF FV + V
Sbjct: 5 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 72 DDLLAAGDHYIGNKKIDPKRVTKR 95
+LA+ H + + IDPK T R
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTPR 88
Score = 154 (59.3 bits), Expect = 4.7e-23, Sum P(2) = 4.7e-23
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
KIFVGG+ E ++R+YF ++G +TE +D K +GF FI+F+D+ DQ +
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 162 PKQVICGKEVDVKRVK 177
I GK+V+VKR +
Sbjct: 174 HFHDIMGKKVEVKRAE 189
Score = 147 (56.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 32/89 (35%), Positives = 50/89 (56%)
Query: 10 GPGRNDE---RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYT 66
GP R+D K+FVGG+ N GE E+ +YF ++G V + + D + RGF F+T+
Sbjct: 104 GP-RSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFE 162
Query: 67 TQKAVDDLLAAGDHYIGNKKIDPKRVTKR 95
+++VD + H I KK++ KR R
Sbjct: 163 DEQSVDQAVNMHFHDIMGKKVEVKRAEPR 191
Score = 145 (56.1 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+FVGGL T++ +R YFSQYG + + DK+ N +GF F+ F D N VL +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 162 PKQVICGKEVDVK 174
+ G+ +D K
Sbjct: 71 RPHTLDGRNIDPK 83
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 173 (66.0 bits), Expect = 4.8e-23, Sum P(2) = 4.8e-23
Identities = 37/84 (44%), Positives = 48/84 (57%)
Query: 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAV 71
G ++ KLFVGGL +T ++ + YFSQYGEV I D T QSRGF FV + V
Sbjct: 5 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 72 DDLLAAGDHYIGNKKIDPKRVTKR 95
+LA+ H + + IDPK T R
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTPR 88
Score = 154 (59.3 bits), Expect = 4.8e-23, Sum P(2) = 4.8e-23
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
KIFVGG+ E ++R+YF ++G +TE +D K +GF FI+F+D+ DQ +
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 162 PKQVICGKEVDVKRVK 177
I GK+V+VKR +
Sbjct: 174 HFHDIMGKKVEVKRAE 189
Score = 147 (56.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 10 GPGRNDER--KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTT 67
GP ++ + K+FVGG+ N GE E+ +YF ++G V + + D + RGF F+T+
Sbjct: 104 GPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 163
Query: 68 QKAVDDLLAAGDHYIGNKKIDPKRVTKR 95
+++VD + H I KK++ KR R
Sbjct: 164 EQSVDQAVNMHFHDIMGKKVEVKRAEPR 191
Score = 145 (56.1 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+FVGGL T++ +R YFSQYG + + DK+ N +GF F+ F D N VL +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 162 PKQVICGKEVDVK 174
+ G+ +D K
Sbjct: 71 RPHTLDGRNIDPK 83
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 173 (66.0 bits), Expect = 4.8e-23, Sum P(2) = 4.8e-23
Identities = 37/84 (44%), Positives = 48/84 (57%)
Query: 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAV 71
G ++ KLFVGGL +T ++ + YFSQYGEV I D T QSRGF FV + V
Sbjct: 5 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 72 DDLLAAGDHYIGNKKIDPKRVTKR 95
+LA+ H + + IDPK T R
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTPR 88
Score = 154 (59.3 bits), Expect = 4.8e-23, Sum P(2) = 4.8e-23
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
KIFVGG+ E ++R+YF ++G +TE +D K +GF FI+F+D+ DQ +
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 162 PKQVICGKEVDVKRVK 177
I GK+V+VKR +
Sbjct: 174 HFHDIMGKKVEVKRAE 189
Score = 147 (56.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 10 GPGRNDER--KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTT 67
GP ++ + K+FVGG+ N GE E+ +YF ++G V + + D + RGF F+T+
Sbjct: 104 GPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 163
Query: 68 QKAVDDLLAAGDHYIGNKKIDPKRVTKR 95
+++VD + H I KK++ KR R
Sbjct: 164 EQSVDQAVNMHFHDIMGKKVEVKRAEPR 191
Score = 145 (56.1 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+FVGGL T++ +R YFSQYG + + DK+ N +GF F+ F D N VL +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 162 PKQVICGKEVDVK 174
+ G+ +D K
Sbjct: 71 RPHTLDGRNIDPK 83
>UNIPROTKB|F1N235 [details] [associations]
symbol:F1N235 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02006449 IPI:IPI01002976
Ensembl:ENSBTAT00000014868 OMA:LENGTGR Uniprot:F1N235
Length = 353
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 57/172 (33%), Positives = 94/172 (54%)
Query: 13 RNDER--KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKA 70
R +E+ KLF+G L T E+ + +Y+ Q+G + + DP + +SR F F+T+++
Sbjct: 15 RENEQFCKLFIGDLSSETTEESLWNYYRQWGYLTDCVLIRDPASQKSRRFGFITFSSMAE 74
Query: 71 VDDLLAAGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQ 123
+D +AA H+I K + PKR R + K K+FVGG+T ++ E +RDYF +
Sbjct: 75 LDAAMAARPHFIDGKMVMPKRAVPREDHGKLGALITVKKLFVGGITEDMKEHHLRDYFEK 134
Query: 124 YGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
YG I + D K+GF FI+FDD + D+++ I G +V++
Sbjct: 135 YGKINAIEIVTDGQSGKKRGFGFITFDDHDPVDKIVLQKNHTINGHRAEVRK 186
Score = 149 (57.5 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+KLFVGG+ + E + DYF +YG++ +I I D +G+ RGF F+T+ VD ++
Sbjct: 112 KKLFVGGITEDMKEHHLRDYFEKYGKINAIEIVTDGQSGKKRGFGFITFDDHDPVDKIVL 171
Query: 77 AGDHYIGNKKIDPKRVTKR 95
+H I + + ++ R
Sbjct: 172 QKNHTINGHRAEVRKALSR 190
Score = 115 (45.5 bits), Expect = 0.00038, P = 0.00038
Identities = 27/82 (32%), Positives = 42/82 (51%)
Query: 94 KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQN 153
KR N CK+F+G L++E TE+ + +Y+ Q+G +T+ D + + F FI+F
Sbjct: 14 KRENEQFCKLFIGDLSSETTEESLWNYYRQWGYLTDCVLIRDPASQKSRRFGFITFSSMA 73
Query: 154 VADQVLKNPKQVICGKEVDVKR 175
D + I GK V KR
Sbjct: 74 ELDAAMAARPHFIDGKMVMPKR 95
>UNIPROTKB|E2R5N6 [details] [associations]
symbol:E2R5N6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03012109
Ensembl:ENSCAFT00000010232 OMA:EMASASC Uniprot:E2R5N6
Length = 322
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 54/171 (31%), Positives = 89/171 (52%)
Query: 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAV 71
G +KLF+GG T ++ + +F Q G + + DP T +SRGF FVTYT + V
Sbjct: 9 GPEQLQKLFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFVTYTAVEEV 68
Query: 72 DDLLAAGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQY 124
D + A H + + ++PKR + + + + KIF GG+ + E +RDYF QY
Sbjct: 69 DPAMHARPHKVDGRVVEPKRTSSKEDSQRPGAHLTVKKIFAGGIKEDTEEHHLRDYFEQY 128
Query: 125 GSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
G I + D+ K+GF F++FDD + D+++ + G +V++
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEVRK 179
Score = 151 (58.2 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 29/86 (33%), Positives = 48/86 (55%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+F GG+ +T E + DYF QYG++E I I D +G+ RGFAFVT+
Sbjct: 98 PGAHLTVKKIFAGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
+VD ++ H + + ++ +
Sbjct: 158 SVDKIVIQKYHTVNGHNWEVRKALSK 183
>UNIPROTKB|F1M117 [details] [associations]
symbol:F1M117 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00558412 Ensembl:ENSRNOT00000023321
Uniprot:F1M117
Length = 366
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 58/166 (34%), Positives = 92/166 (55%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T + + ++F + G + + DP T SRGF FVT + + VD +
Sbjct: 36 RKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMC 95
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + +K KIFVGG+ + E ++RDYF +YG TE
Sbjct: 96 ARPHKVDGRVVEPKRAVSREDSVKPGAHLMVKKIFVGGIKEDTEEYNLRDYFEKYGK-TE 154
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ +++ K+GF F++FDDQ+ D+++ I G +VKR
Sbjct: 155 TIEG-RQAEWEKRGFAFVTFDDQDTVDKIVVQKHHTINGHNCEVKR 199
Score = 142 (55.0 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 30/83 (36%), Positives = 48/83 (57%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGG+ +T E + DYF +YG+ E+I + + + RGFAFVT+ Q VD ++
Sbjct: 127 KKIFVGGIKEDTEEYNLRDYFEKYGKTETIEGRQAEW--EKRGFAFVTFDDQDTVDKIVV 184
Query: 77 AGDHYIGNKKIDPKR-VTKRVNP 98
H I + KR ++K+ P
Sbjct: 185 QKHHTINGHNCEVKRALSKQEMP 207
>UNIPROTKB|F1M5L3 [details] [associations]
symbol:F1M5L3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00358908 Ensembl:ENSRNOT00000041535
Uniprot:F1M5L3
Length = 364
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 58/166 (34%), Positives = 92/166 (55%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T + + ++F + G + + DP T SRGF FVT + + VD +
Sbjct: 36 RKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMC 95
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + +K KIFVGG+ + E ++RDYF +YG TE
Sbjct: 96 ARPHKVDGRVVEPKRAVSREDSVKPGAHLMVKKIFVGGIKEDTEEYNLRDYFEKYGK-TE 154
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ +++ K+GF F++FDDQ+ D+++ I G +VKR
Sbjct: 155 TIEG-RQAEWEKRGFAFVTFDDQDTVDKIVVQKHHTINGHNCEVKR 199
Score = 142 (55.0 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 30/83 (36%), Positives = 48/83 (57%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGG+ +T E + DYF +YG+ E+I + + + RGFAFVT+ Q VD ++
Sbjct: 127 KKIFVGGIKEDTEEYNLRDYFEKYGKTETIEGRQAEW--EKRGFAFVTFDDQDTVDKIVV 184
Query: 77 AGDHYIGNKKIDPKR-VTKRVNP 98
H I + KR ++K+ P
Sbjct: 185 QKHHTINGHNCEVKRALSKQEMP 207
>UNIPROTKB|F1M6C7 [details] [associations]
symbol:F1M6C7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00370270
Ensembl:ENSRNOT00000014756 Uniprot:F1M6C7
Length = 273
Score = 237 (88.5 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 55/150 (36%), Positives = 79/150 (52%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T + + +F Q+ + DP T +SRGF FVTYTT + VD +
Sbjct: 5 RKLFIGGLSFKTTNESLRSHFEQWRTLTDCVEMRDPNTKRSRGFGFVTYTTVEEVDAAMN 64
Query: 77 AGDHYIGNKKIDPKRVTKRVN---P---LKCK-IFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + ++PKR R + P L K I VGG+ + E +RDYF YG I
Sbjct: 65 ARPHKVDGSFVEPKRAVSREDSQSPGAHLTVKEISVGGIKEDTEEHHLRDYFEHYGKIEV 124
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVL 159
+ D+ KK F F++FDD + D+++
Sbjct: 125 IEIMTDRGSG-KKEFAFVTFDDHDSVDKIV 153
Score = 121 (47.7 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 26/86 (30%), Positives = 46/86 (53%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +++ VGG+ +T E + DYF YG++E I I D +G+ FAFVT+
Sbjct: 89 PGAHLTVKEISVGGIKEDTEEHHLRDYFEHYGKIEVIEIMTDRGSGKKE-FAFVTFDDHD 147
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
+VD ++ H + + ++K+
Sbjct: 148 SVDKIVIQKYHTVNGHNCETVALSKQ 173
Score = 40 (19.1 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 313 PGYDYSAMGYAYPAPATSYGGGKYREAAAYPRH 345
PGY + GY G Y + +Y R+
Sbjct: 196 PGYCEGSRGYGSGGQGDGNQGSGYGGSGSYDRY 228
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 165 (63.1 bits), Expect = 1.2e-22, Sum P(4) = 1.2e-22
Identities = 37/86 (43%), Positives = 48/86 (55%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
KLFVGGL +T ++ + +YFSQYGEV I D T QSRGF FV + V +L
Sbjct: 12 KLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCVRTVLDT 71
Query: 78 GDHYIGNKKIDPKRVTKR-VNPLKCK 102
H + + IDPK T R + P K +
Sbjct: 72 KPHNLDGRNIDPKPCTPRGMQPEKTR 97
Score = 154 (59.3 bits), Expect = 4.9e-09, Sum P(3) = 4.9e-09
Identities = 29/82 (35%), Positives = 48/82 (58%)
Query: 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDD 73
N +K+FVGG+ N GE E+ DYF+++G V + + D + RGF F+T+ +++VD
Sbjct: 110 NKSKKIFVGGIPHNCGEAELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQ 169
Query: 74 LLAAGDHYIGNKKIDPKRVTKR 95
+ H I KK++ K+ R
Sbjct: 170 AVNMHFHDIMGKKVEVKKAEPR 191
Score = 148 (57.2 bits), Expect = 1.2e-22, Sum P(4) = 1.2e-22
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
KIFVGG+ E ++RDYF+++G +TE +D K +GF FI+F+ + DQ +
Sbjct: 114 KIFVGGIPHNCGEAELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQAVNM 173
Query: 162 PKQVICGKEVDVKRVK 177
I GK+V+VK+ +
Sbjct: 174 HFHDIMGKKVEVKKAE 189
Score = 145 (56.1 bits), Expect = 6.9e-08, Sum P(3) = 6.9e-08
Identities = 29/73 (39%), Positives = 41/73 (56%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+FVGGL T++ +R+YFSQYG + + DKS N +GF F+ F D N VL
Sbjct: 12 KLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCVRTVLDT 71
Query: 162 PKQVICGKEVDVK 174
+ G+ +D K
Sbjct: 72 KPHNLDGRNIDPK 84
Score = 43 (20.2 bits), Expect = 1.9e-22, Sum P(3) = 1.9e-22
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 304 SYDAYATAYPGYDYSAMGYAY--PA-PATSYGGGKYREAAAYPRHA 346
SY Y Y G D SA G+++ P+ P SY ++ P A
Sbjct: 346 SYSQYG--Y-GQDLSAFGHSFADPSQPTASYAAAPSAPSSGAPAAA 388
Score = 37 (18.1 bits), Expect = 1.2e-22, Sum P(4) = 1.2e-22
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 242 GYDYSAMGYAYPAPAVQT 259
G D SA G+++ P+ T
Sbjct: 353 GQDLSAFGHSFADPSQPT 370
Score = 37 (18.1 bits), Expect = 1.2e-22, Sum P(4) = 1.2e-22
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 318 SAMGYAYPAPATSYGGGKYREAAAYPRHAPY 348
SA PA A+S+G G+ + H PY
Sbjct: 378 SAPSSGAPAAASSFGRGQNHNVQGF--H-PY 405
Score = 37 (18.1 bits), Expect = 8.0e-22, Sum P(3) = 8.0e-22
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 309 ATAYPGYDYSAMGY 322
A A P + YS GY
Sbjct: 339 APAQPDFSYSQYGY 352
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 163 (62.4 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
Identities = 30/82 (36%), Positives = 50/82 (60%)
Query: 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDD 73
+D+ KLF+GG+ +T E + +YFS +GEV +++ + TG+ RGF FV ++ +D
Sbjct: 3 SDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDR 62
Query: 74 LLAAGDHYIGNKKIDPKRVTKR 95
+L H+I N+ +D KR R
Sbjct: 63 VLQ-DKHHIDNRDVDVKRAMSR 83
Score = 142 (55.0 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
KIFVGGL +T + R YF YG +++ D++ +GF F+SFD ++ D VL
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHK 170
Query: 162 PKQVICGKEVDVKR 175
+ GK+V+VKR
Sbjct: 171 TFHDLNGKQVEVKR 184
Score = 137 (53.3 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 28/80 (35%), Positives = 48/80 (60%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GG++ + E +R+YFS +G + + +K+ +GF F++F D V D+VL++
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 162 PKQVICGKEVDVKRVKFNPE 181
K I ++VDVKR E
Sbjct: 67 -KHHIDNRDVDVKRAMSREE 85
Score = 130 (50.8 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 33/99 (33%), Positives = 50/99 (50%)
Query: 2 SYRANGTAGPGRNDE-RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGF 60
++ A+ G N +K+FVGGL E YF YG V I D T + RGF
Sbjct: 94 TFNASRNFDSGANVRTKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGF 153
Query: 61 AFVTYTTQKAVDDLLAAGDHYIGNKKIDPKR-VTKRVNP 98
FV++ ++ +VD +L H + K+++ KR + K NP
Sbjct: 154 GFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRALPKDANP 192
Score = 53 (23.7 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 310 TAYPGYDYSAMG--YAYPAPATSYGG-GKYREAAAYPRHAP 347
+ YP Y S G Y Y + YGG G Y A P P
Sbjct: 236 SGYPPYGGSGYGTGYGYGSNGVGYGGFGGYGNPAGAPYGNP 276
Score = 49 (22.3 bits), Expect = 3.5e-22, Sum P(3) = 3.5e-22
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 298 YGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKYREA 339
YGY G+ +Y T P Y A+G ++GGG Y +A
Sbjct: 335 YGY-GGNDSSYGT--PSA-YGAVGGRSGNMPNNHGGGGYADA 372
Score = 40 (19.1 bits), Expect = 3.0e-21, Sum P(3) = 3.0e-21
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 317 YSAMGYAYPAPATSYG 332
Y + GY Y +SYG
Sbjct: 330 YGSQGYGYGGNDSSYG 345
>UNIPROTKB|F1LUF2 [details] [associations]
symbol:F1LUF2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00952415
Ensembl:ENSRNOT00000042380 Uniprot:F1LUF2
Length = 238
Score = 231 (86.4 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 53/165 (32%), Positives = 86/165 (52%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
KLF+GGL ++ + +F Q+G + + + DP T +S GF FVTY T + VD +
Sbjct: 1 KLFIGGLSFEKTDEGLRSHFEQWGTLTNSVVMRDPNTKRSGGFGFVTYATVEEVDAAMNE 60
Query: 78 GDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITEF 130
H + + ++PKR R + + KIFVG + + E +RDYF QYG I
Sbjct: 61 RPHKVDERVLEPKRAVSREDSERTGTHLTVKKIFVGVVKEDTEEHHLRDYFEQYGKI--- 117
Query: 131 QQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
Q+ + K +GFCF +FDD + D+++ + G +V++
Sbjct: 118 QRQWKK-----EGFCFFTFDDHDSVDKIVIQKYHTVGGHTCEVRK 157
Score = 44 (20.5 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 293 MEEANYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGK 335
M+ N+G D Y S GY + ++SYG G+
Sbjct: 195 MKGGNFGGGGSGPDGGRGQYFAKPRSQGGYGGSSSSSSYGSGR 237
>UNIPROTKB|F1RH94 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:CU468422
Ensembl:ENSSSCT00000015648 Uniprot:F1RH94
Length = 315
Score = 235 (87.8 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 52/165 (31%), Positives = 87/165 (52%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
KLF+GGL+ T E + +F +G + + +P T +SR F FVTY+ + D +AA
Sbjct: 13 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 72
Query: 78 GDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITEF 130
H + ++ KR R + + K+FVGGL ++ E D+ ++FSQ+G++ +
Sbjct: 73 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 132
Query: 131 QQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ DK K+GF F+ F + + AD+ I G V+VK+
Sbjct: 133 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKK 177
Score = 138 (53.6 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 30/89 (33%), Positives = 48/89 (53%)
Query: 8 TAGPGRNDE-RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYT 66
+A PG + + +KLFVGGL + E ++ ++FSQ+G VE I D +G+ RGF FV +
Sbjct: 93 SARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQ 152
Query: 67 TQKAVDDLLAAGDHYIGNKKIDPKRVTKR 95
A D H I +++ K+ +
Sbjct: 153 NHDAADKAAVVKFHPIQGHRVEVKKAVPK 181
Score = 111 (44.1 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 21/85 (24%), Positives = 42/85 (49%)
Query: 91 RVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFD 150
R + N CK+F+GGL + +E +R +F +G++T+ + + F F+++
Sbjct: 2 RAVEMENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYS 61
Query: 151 DQNVADQVLKNPKQVICGKEVDVKR 175
+ AD + + G V++KR
Sbjct: 62 NVEEADAAMAASPHAVDGNTVELKR 86
Score = 39 (18.8 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 299 GYTAGS-YDAYA-----TAYPGYDYSAM--GY-AYPAPATSYG 332
GY G Y+AY ++Y G DY G+ +Y +SYG
Sbjct: 227 GYGGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYG 269
>UNIPROTKB|Q13151 [details] [associations]
symbol:HNRNPA0 "Heterogeneous nuclear ribonucleoprotein A0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISS;TAS] [GO:0006954
"inflammatory response" evidence=ISS] [GO:0032496 "response to
lipopolysaccharide" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 EMBL:CH471062 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0030529 GO:GO:0000398 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 HOGENOM:HOG000234442 EMBL:U23803 EMBL:CR456986
EMBL:BC001008 EMBL:BC007271 EMBL:BC009284 EMBL:BC011972
EMBL:BC012980 EMBL:BC018949 EMBL:BC019271 EMBL:BC028976
EMBL:BC030249 IPI:IPI00011913 RefSeq:NP_006796.1 UniGene:Hs.645902
UniGene:Hs.96996 ProteinModelPortal:Q13151 SMR:Q13151 IntAct:Q13151
MINT:MINT-5001237 STRING:Q13151 PhosphoSite:Q13151 DMDM:8134660
REPRODUCTION-2DPAGE:Q13151 SWISS-2DPAGE:Q13151 PaxDb:Q13151
PeptideAtlas:Q13151 PRIDE:Q13151 DNASU:10949
Ensembl:ENST00000314940 GeneID:10949 KEGG:hsa:10949 UCSC:uc003lbt.3
CTD:10949 GeneCards:GC05M137114 HGNC:HGNC:5030 HPA:HPA036569
MIM:609409 neXtProt:NX_Q13151 PharmGKB:PA162391106
InParanoid:Q13151 KO:K12894 OMA:GPMKQNL OrthoDB:EOG4W6NX4
PhylomeDB:Q13151 GenomeRNAi:10949 NextBio:41601 Bgee:Q13151
CleanEx:HS_HNRNPA0 Genevestigator:Q13151 GermOnline:ENSG00000177733
Uniprot:Q13151
Length = 305
Score = 235 (87.8 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 52/165 (31%), Positives = 87/165 (52%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
KLF+GGL+ T E + +F +G + + +P T +SR F FVTY+ + D +AA
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 78 GDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITEF 130
H + ++ KR R + + K+FVGGL ++ E D+ ++FSQ+G++ +
Sbjct: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 127
Query: 131 QQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ DK K+GF F+ F + + AD+ I G V+VK+
Sbjct: 128 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKK 172
Score = 138 (53.6 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 30/89 (33%), Positives = 48/89 (53%)
Query: 8 TAGPGRNDE-RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYT 66
+A PG + + +KLFVGGL + E ++ ++FSQ+G VE I D +G+ RGF FV +
Sbjct: 88 SARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQ 147
Query: 67 TQKAVDDLLAAGDHYIGNKKIDPKRVTKR 95
A D H I +++ K+ +
Sbjct: 148 NHDAADKAAVVKFHPIQGHRVEVKKAVPK 176
Score = 39 (18.8 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 14/38 (36%), Positives = 16/38 (42%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKY 336
GY SY Y G Y+A G +SYGG Y
Sbjct: 216 GYN--SYGGYGGGGGG-GYNAYGGG--GGGSSYGGSDY 248
Score = 38 (18.4 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 296 ANYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGG----GKYR 337
++YG G + +Y+ Y G +S+GG G YR
Sbjct: 246 SDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYR 291
>FB|FBgn0004903 [details] [associations]
symbol:Rb97D "Ribonuclear protein at 97D" species:7227
"Drosophila melanogaster" [GO:0007286 "spermatid development"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007283 "spermatogenesis" evidence=NAS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0007275
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
eggNOG:COG0724 GeneTree:ENSGT00700000104255 EMBL:L02106
EMBL:BT001320 PIR:S33679 PIR:S33680 RefSeq:NP_001014671.1
RefSeq:NP_001014672.1 RefSeq:NP_001014673.1 RefSeq:NP_001014674.1
RefSeq:NP_001014675.1 RefSeq:NP_001014676.1 RefSeq:NP_001014677.1
RefSeq:NP_524520.1 RefSeq:NP_733172.1 UniGene:Dm.22918
ProteinModelPortal:Q02926 SMR:Q02926 DIP:DIP-18137N IntAct:Q02926
MINT:MINT-957540 STRING:Q02926 PaxDb:Q02926 PRIDE:Q02926
EnsemblMetazoa:FBtr0085093 EnsemblMetazoa:FBtr0100337
EnsemblMetazoa:FBtr0100339 EnsemblMetazoa:FBtr0100340 GeneID:43231
KEGG:dme:Dmel_CG6354 CTD:43231 FlyBase:FBgn0004903
InParanoid:Q02926 OMA:DICELEH OrthoDB:EOG43N5VC PhylomeDB:Q02926
ChiTaRS:Rb97D GenomeRNAi:43231 NextBio:832835 Bgee:Q02926
GermOnline:CG6354 Uniprot:Q02926
Length = 471
Score = 264 (98.0 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 57/170 (33%), Positives = 91/170 (53%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T E+ + ++ Q+G+V + + D T +SRGF F+TYT VD
Sbjct: 32 RKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQE 91
Query: 77 AGDHYIGNKKID-------PKRVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITE 129
H I K ++ P+R ++ N K+FVGGL E+ +R+YF Q+G++
Sbjct: 92 NRPHIIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVS 151
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFN 179
+ DK+ ++GF F+ FDD + D+ + + I VDVK+ +N
Sbjct: 152 VKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSIYN 201
Score = 124 (48.7 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 24/80 (30%), Positives = 44/80 (55%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GGL TE++++ ++ Q+G + + D + +GF FI++ + D+ +N
Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQEN 92
Query: 162 PKQVICGKEVDVKRVKFNPE 181
+I GK V+ KR PE
Sbjct: 93 RPHIIDGKTVEAKRALPRPE 112
>UNIPROTKB|F6RSR1 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:DAAA02020383
IPI:IPI00687625 Ensembl:ENSBTAT00000022514 Uniprot:F6RSR1
Length = 310
Score = 235 (87.8 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 52/165 (31%), Positives = 87/165 (52%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
KLF+GGL+ T E + +F +G + + +P T +SR F FVTY+ + D +AA
Sbjct: 13 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 72
Query: 78 GDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITEF 130
H + ++ KR R + + K+FVGGL ++ E D+ ++FSQ+G++ +
Sbjct: 73 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 132
Query: 131 QQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ DK K+GF F+ F + + AD+ I G V+VK+
Sbjct: 133 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKK 177
Score = 138 (53.6 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 30/89 (33%), Positives = 48/89 (53%)
Query: 8 TAGPGRNDE-RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYT 66
+A PG + + +KLFVGGL + E ++ ++FSQ+G VE I D +G+ RGF FV +
Sbjct: 93 SARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQ 152
Query: 67 TQKAVDDLLAAGDHYIGNKKIDPKRVTKR 95
A D H I +++ K+ +
Sbjct: 153 NHDAADKAAVVKFHPIQGHRVEVKKAVPK 181
Score = 111 (44.1 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 21/85 (24%), Positives = 42/85 (49%)
Query: 91 RVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFD 150
R + N CK+F+GGL + +E +R +F +G++T+ + + F F+++
Sbjct: 2 RAVEMENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYS 61
Query: 151 DQNVADQVLKNPKQVICGKEVDVKR 175
+ AD + + G V++KR
Sbjct: 62 NVEEADAAMAASPHAVDGNTVELKR 86
Score = 38 (18.4 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 296 ANYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGG----GKYR 337
++YG G + +Y+ Y G +S+GG G YR
Sbjct: 251 SDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYR 296
>UNIPROTKB|E2RBV8 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0032496 GO:GO:0006954 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0070935 GeneTree:ENSGT00700000104255 CTD:10949
KO:K12894 OMA:GPMKQNL EMBL:AAEX03007810 RefSeq:XP_538645.2
ProteinModelPortal:E2RBV8 Ensembl:ENSCAFT00000001730 GeneID:481524
KEGG:cfa:481524 NextBio:20856300 Uniprot:E2RBV8
Length = 310
Score = 235 (87.8 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 52/165 (31%), Positives = 87/165 (52%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
KLF+GGL+ T E + +F +G + + +P T +SR F FVTY+ + D +AA
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 78 GDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITEF 130
H + ++ KR R + + K+FVGGL ++ E D+ ++FSQ+G++ +
Sbjct: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 127
Query: 131 QQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ DK K+GF F+ F + + AD+ I G V+VK+
Sbjct: 128 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKK 172
Score = 138 (53.6 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 30/89 (33%), Positives = 48/89 (53%)
Query: 8 TAGPGRNDE-RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYT 66
+A PG + + +KLFVGGL + E ++ ++FSQ+G VE I D +G+ RGF FV +
Sbjct: 88 SARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQ 147
Query: 67 TQKAVDDLLAAGDHYIGNKKIDPKRVTKR 95
A D H I +++ K+ +
Sbjct: 148 NHDAADKAAVVKFHPIQGHRVEVKKAVPK 176
Score = 38 (18.4 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 299 GYTAGSYDAYA-----TAYPGYDYSAM--GY-AYPAPATSYG 332
G G Y+AY ++Y G DY G+ +Y +SYG
Sbjct: 230 GGGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYG 271
>UNIPROTKB|F1LUM4 [details] [associations]
symbol:F1LUM4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00389838
ProteinModelPortal:F1LUM4 Ensembl:ENSRNOT00000031839 Uniprot:F1LUM4
Length = 209
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 52/164 (31%), Positives = 86/164 (52%)
Query: 19 LFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG 78
L +GGL T + + ++ ++G + + DP T SRGF FVTY+ + VD + A
Sbjct: 1 LLIGGLSFETTDDSLREHSEKWGTLTDCVVMTDPQTEHSRGFGFVTYSCVEEVDAAMCAW 60
Query: 79 DHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITEFQ 131
H + + ++PKR R + +K KIFVGG+ + E ++RDYF +YG I +
Sbjct: 61 PHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 120
Query: 132 QPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
D+ K+GF F++FDD + D+++ I +VK+
Sbjct: 121 VMEDRQSGKKRGFAFVTFDDHDTVDKIVFQEHHAINRHNCEVKK 164
Score = 161 (61.7 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF +YG++E+I + D +G+ RGFAFVT+
Sbjct: 83 PGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHD 142
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
VD ++ H I + K+ +
Sbjct: 143 TVDKIVFQEHHAINRHNCEVKKAVSK 168
>UNIPROTKB|D4ACP9 [details] [associations]
symbol:D4ACP9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00388048
ProteinModelPortal:D4ACP9 Ensembl:ENSRNOT00000002123 Uniprot:D4ACP9
Length = 253
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 57/171 (33%), Positives = 90/171 (52%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
KLF+GGL T + + ++F Q+ ++ + + DP T +SR F FVTY+ K VD + A
Sbjct: 14 KLFIGGLSFETSDDSLREHFEQW-DMLTHCVVMDPQTKRSRVFGFVTYSCVKEVDAAMCA 72
Query: 78 GDHYIGNKKIDPKRVTKR--VNPLKC----KIFVGGLTTEITEQDVRDYFSQYGSITEFQ 131
H + ++PKR + V P+ C KIF+GG+ + E ++RDYF +YG I +
Sbjct: 73 RPHKVDGCVVEPKRPFREDSVKPVVCLLAKKIFIGGIKEDTEEHNLRDYFEKYGKIETIE 132
Query: 132 -QPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFNPE 181
D+ K+GF F++FDD D+++ I DVK+ E
Sbjct: 133 IMEEDRQSGEKRGFAFVTFDDHYTVDKIVVQKCHTINRHNCDVKKAPSKQE 183
Score = 157 (60.3 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISI-KNDPYTGQSRGFAFVTYTTQKAVDDLL 75
+K+F+GG+ +T E + DYF +YG++E+I I + D +G+ RGFAFVT+ VD ++
Sbjct: 102 KKIFIGGIKEDTEEHNLRDYFEKYGKIETIEIMEEDRQSGEKRGFAFVTFDDHYTVDKIV 161
Query: 76 AAGDHYIGNKKIDPKRVTKR 95
H I D K+ +
Sbjct: 162 VQKCHTINRHNCDVKKAPSK 181
>UNIPROTKB|F1LZZ2 [details] [associations]
symbol:F1LZZ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00556964
Ensembl:ENSRNOT00000044311 OMA:KERREDT Uniprot:F1LZZ2
Length = 294
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 58/181 (32%), Positives = 96/181 (53%)
Query: 4 RANGTAG--PGRNDE-RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGF 60
R G G P ++ RKLF+GGL T + + ++F ++G + + DP SRGF
Sbjct: 21 RGRGMEGHDPKEPEQLRKLFIGGLSFETTDGSLREHFEKWGTLTDCVVMRDPQRKCSRGF 80
Query: 61 AFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVTKR---VNP----LKCKIFVGGLTTEIT 113
+FVTY+ + V ++ A H + ++PKR R + P + KIFVGG+ +
Sbjct: 81 SFVTYSCVEEVGAVMCARPHKVVGCVVEPKRAVSREDSIIPGAHLMVEKIFVGGIKEDTE 140
Query: 114 EQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDV 173
E ++RDYF +YG I + D+ K+GF F++FD+ + D+V++ + G +V
Sbjct: 141 EYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDNHDTVDKVVQK-YHTVNGHNCEV 199
Query: 174 K 174
K
Sbjct: 200 K 200
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 48/111 (43%), Positives = 74/111 (66%)
Query: 19 LFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG 78
+F+GGL +T +K++ DYFS++GEV ++K DP TG+SRGF FV + ++VD ++
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 79 DHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSI 127
+H + K IDPKR K P+K KIFVGGL+ + E+ +R+YF +G +
Sbjct: 61 EHKLNGKVIDPKRAKAMKTKEPVK-KIFVGGLSPDTPEEKIREYFGGFGEV 110
Score = 138 (53.6 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 103 IFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNP 162
+F+GGL+ + T++D++DYFS++G + + D +GF F+ F + D+V+
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 163 KQVICGKEVDVKRVK 177
+ + GK +D KR K
Sbjct: 61 EHKLNGKVIDPKRAK 75
>UNIPROTKB|E2QXH4 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:AAEX03009384
ProteinModelPortal:E2QXH4 Ensembl:ENSCAFT00000004613 Uniprot:E2QXH4
Length = 301
Score = 214 (80.4 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 45/132 (34%), Positives = 71/132 (53%)
Query: 51 DPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVTKRVNPLKC-------KI 103
DP + +SRGF FVT+++ VD +AA H I + ++PKR R K K+
Sbjct: 3 DPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKL 62
Query: 104 FVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK 163
FVGG+ + E +RDYF +YG I + D+ K+GF F++FDD + D+++
Sbjct: 63 FVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKY 122
Query: 164 QVICGKEVDVKR 175
I G +V++
Sbjct: 123 HTINGHNAEVRK 134
Score = 154 (59.3 bits), Expect = 8.8e-11, Sum P(2) = 8.8e-11
Identities = 30/86 (34%), Positives = 48/86 (55%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +KLFVGG+ +T E + DYF +YG++++I I D +G+ RGF FVT+
Sbjct: 53 PGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 112
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
VD ++ H I + ++ R
Sbjct: 113 PVDKIVLQKYHTINGHNAEVRKALSR 138
Score = 53 (23.7 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 14/38 (36%), Positives = 15/38 (39%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKY 336
GY G Y PGY GY +YGGG Y
Sbjct: 209 GY-GGGRGGYGGGGPGYGNQGGGYG--GGYDNYGGGNY 243
Score = 42 (19.8 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 12/38 (31%), Positives = 12/38 (31%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKY 336
GY G PGY GY P GG Y
Sbjct: 194 GYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGY 231
>UNIPROTKB|D4A8U2 [details] [associations]
symbol:D4A8U2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00947740
ProteinModelPortal:D4A8U2 Ensembl:ENSRNOT00000064543
ArrayExpress:D4A8U2 Uniprot:D4A8U2
Length = 196
Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
Identities = 50/150 (33%), Positives = 83/150 (55%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL + + ++F ++G + + DP T +SR F+FVTY+ K VD +
Sbjct: 13 RKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEVDAAMC 72
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + +K KIFVGG+ + E ++RDYF +YG I
Sbjct: 73 AQPHNVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIKT 132
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVL 159
+ D+ K+ F++FDD + D+++
Sbjct: 133 MEVMEDRLSG-KERLLFVTFDDHDTVDKIV 161
>UNIPROTKB|F1M6S2 [details] [associations]
symbol:F1M6S2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00782238
ProteinModelPortal:F1M6S2 Ensembl:ENSRNOT00000030712 Uniprot:F1M6S2
Length = 223
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 54/167 (32%), Positives = 90/167 (53%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFV-TYTTQKAVDDLL 75
RKLF+G L T + + ++F ++G ++ + + D +SR F FV TY+ K VD +
Sbjct: 18 RKLFIGCLSFETTDDSLREHFEKWGTLDCV-VMRDLQIKRSRSFGFVSTYSCVKEVDAAM 76
Query: 76 AAGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSIT 128
A H + ++PKR R + +K KIFVGG+ + E ++RDYF +YG I
Sbjct: 77 CARPHKVDGHVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIE 136
Query: 129 EFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D++++ I G +VK+
Sbjct: 137 IIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVQK-YHTINGHNYEVKK 182
Score = 150 (57.9 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 30/86 (34%), Positives = 48/86 (55%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF +YG++E I + D +G+ RGFAFVT+
Sbjct: 102 PGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIEIIEVMEDRQSGKKRGFAFVTFDDHD 161
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
VD ++ H I + K+ +
Sbjct: 162 TVDKIVQKY-HTINGHNYEVKKAVSK 186
>UNIPROTKB|F1LVU1 [details] [associations]
symbol:F1LVU1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00950080
Ensembl:ENSRNOT00000064004 Uniprot:F1LVU1
Length = 188
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 57/165 (34%), Positives = 88/165 (53%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
R+LF+GGL T E + + F + G + + DP QS F FVTY+ + VD +
Sbjct: 7 RRLFIGGLSFETIEDSLREGF-EMGTLADCVVMRDP---QS--FGFVTYSCVEEVDAAMC 60
Query: 77 AGDHYIGNKKIDPKRVTKR---VNP---LKCKIFVGGLTTEITEQDVRDYFSQYGSITEF 130
A H + + ++PKR R V P L KIFVGG+ + E ++RDYF +YG I
Sbjct: 61 ARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKIFVGGIKEDAEEYNLRDYFEKYGKIETI 120
Query: 131 QQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ N I G +V++
Sbjct: 121 EVMEDRQSGKKRGFAFVTFDDHDTVDKIVVN-YHTINGHNCEVRK 164
Score = 148 (57.2 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 28/85 (32%), Positives = 47/85 (55%)
Query: 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKA 70
PG + K+FVGG+ + E + DYF +YG++E+I + D +G+ RGFAFVT+
Sbjct: 85 PGAHLTVKIFVGGIKEDAEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDT 144
Query: 71 VDDLLAAGDHYIGNKKIDPKRVTKR 95
VD ++ H I + ++ +
Sbjct: 145 VDKIVV-NYHTINGHNCEVRKALSK 168
>UNIPROTKB|F1M0H6 [details] [associations]
symbol:F1M0H6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00766574
Ensembl:ENSRNOT00000044621 Uniprot:F1M0H6
Length = 360
Score = 240 (89.5 bits), Expect = 2.8e-20, P = 2.8e-20
Identities = 54/175 (30%), Positives = 92/175 (52%)
Query: 9 AGPGRNDE-RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTT 67
A P ++ RKLF+GGL T + + ++F + G + + DP T SRGF FVTY+
Sbjct: 23 ADPKEPEQLRKLFIGGLSFETADDSLREHFKKRGTLTDCVVMRDPQTKCSRGFGFVTYSC 82
Query: 68 QKAVDDLLAAGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDY 120
+ VD + A H + + ++PK+ R + +K K FVGG+ + E +++DY
Sbjct: 83 VEEVDAAMCAWLHKVDGRVVEPKKAVSREDSVKLGAHLMVKKTFVGGIKEDTEEYNLKDY 142
Query: 121 FSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
F +YG I + + ++ ++GF F F D +V D+++ I G +VK+
Sbjct: 143 FEKYGKIET--EGMENRQSGRRGFAFAIFGDHDV-DKIVVQKHHTINGHNCEVKK 194
>UNIPROTKB|F1LYN9 [details] [associations]
symbol:F1LYN9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00368496
Ensembl:ENSRNOT00000035403 Uniprot:F1LYN9
Length = 263
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 52/171 (30%), Positives = 83/171 (48%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
KLF+GGL T +K + +F Q+ + + DP + +SRGF + Y T + VD + A
Sbjct: 1 KLFIGGLSFETTDKSLRSHFEQWETLTDCVLMRDPNSKRSRGFGLIAYATVEEVDAAMNA 60
Query: 78 GDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITEF 130
H + + ++PK R + + KIFVGG + E +R YF QYG I
Sbjct: 61 RPHKVDGRVVEPKVAVSREDSHRPGAHLTVKKIFVGGSKEDTEEHHLRVYFEQYGKIEVI 120
Query: 131 QQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFNPE 181
+ D K+GF F++FDDQ+ D ++ + G +V++ E
Sbjct: 121 EIMTDIGSGKKRGFAFVTFDDQDSVDNIVIQKYHTVNGHNCEVRKALLKQE 171
Score = 149 (57.5 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG +T E + YF QYG++E I I D +G+ RGFAFVT+ Q
Sbjct: 84 PGAHLTVKKIFVGGSKEDTEEHHLRVYFEQYGKIEVIEIMTDIGSGKKRGFAFVTFDDQD 143
Query: 70 AVDDLLAAGDHYIGNKKIDPKR 91
+VD+++ H + + ++
Sbjct: 144 SVDNIVIQKYHTVNGHNCEVRK 165
>UNIPROTKB|E2RJS6 [details] [associations]
symbol:E2RJS6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03015762
Ensembl:ENSCAFT00000024318 Uniprot:E2RJS6
Length = 316
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 51/171 (29%), Positives = 86/171 (50%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
KLF+ GL T ++ + +F Q+G + + DP T +SRGF FV + T + VD + A
Sbjct: 15 KLFIRGLSFETTDESLRSHFEQWGTLTGCVVMRDPNTKRSRGFGFVMFATVEEVDAAMNA 74
Query: 78 GDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITEF 130
+ + + ++PKR R + + KIFVGG+ + E + DYF QYG
Sbjct: 75 RPNKVNGRVLEPKRFVSREDSQRPAAYLTVKKIFVGGIKEDTEEHE--DYFEQYGKFEVI 132
Query: 131 QQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFNPE 181
+ D+ K+GF F++FD+ + DQ++ + G +V++ E
Sbjct: 133 EVMTDQGSGKKRGFAFVTFDNHDSVDQIVIQKYHTVNGHSCEVRKALLKQE 183
Score = 145 (56.1 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGG+ +T E E DYF QYG+ E I + D +G+ RGFAFVT+ +VD ++
Sbjct: 105 KKIFVGGIKEDTEEHE--DYFEQYGKFEVIEVMTDQGSGKKRGFAFVTFDNHDSVDQIVI 162
Query: 77 AGDHYIGNKKIDPKR 91
H + + ++
Sbjct: 163 QKYHTVNGHSCEVRK 177
>UNIPROTKB|E2RJI3 [details] [associations]
symbol:LOC608729 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03015120 RefSeq:XP_864182.2
ProteinModelPortal:E2RJI3 Ensembl:ENSCAFT00000015269 GeneID:608729
KEGG:cfa:608729 Uniprot:E2RJI3
Length = 321
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 51/166 (30%), Positives = 86/166 (51%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
KLF+ GL T ++ + + Q G + + DP T SRGF F TY T++ VD ++ A
Sbjct: 15 KLFIKGLSSKTTDESLRSHCEQQGALMDCVVMRDPNTKHSRGFGFTTYATREDVDAVMNA 74
Query: 78 GDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYF-SQYGSITE 129
H + + ++PKR R + + KIFVGG+ + E ++DYF QY I
Sbjct: 75 RPHKMDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLKDYFFEQYEKIEV 134
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+GF F++FDD + D+++ + G + +V++
Sbjct: 135 IEIMTDRGSGKKRGFAFVTFDDHDFVDKIVIQKCHPVNGHDHEVRK 180
Score = 133 (51.9 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYF-SQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
PG + +K+FVGG+ +T E + DYF QY ++E I I D +G+ RGFAFVT+
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLKDYFFEQYEKIEVIEIMTDRGSGKKRGFAFVTFDDH 157
Query: 69 KAVDDLLAAGDH 80
VD ++ H
Sbjct: 158 DFVDKIVIQKCH 169
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 158 (60.7 bits), Expect = 7.1e-20, Sum P(2) = 7.1e-20
Identities = 31/74 (41%), Positives = 47/74 (63%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
KIFVGGL + ITE++ ++YF Q+G+I + +D + +GF FI+FD + D+VL
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 162 PKQVICGKEVDVKR 175
+ GK V+VKR
Sbjct: 171 TFHELNGKLVEVKR 184
Score = 157 (60.3 bits), Expect = 9.8e-09, P = 9.8e-09
Identities = 33/91 (36%), Positives = 53/91 (58%)
Query: 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
G GR +K+FVGGL + E+E +YF Q+G + + + D T + RGF F+T+ +
Sbjct: 105 GGGRT--KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDD 162
Query: 70 AVDDLLAAGDHYIGNKKIDPKR-VTKRVNPL 99
AVD +L H + K ++ KR V K ++P+
Sbjct: 163 AVDRVLHKTFHELNGKLVEVKRAVPKEISPV 193
Score = 144 (55.7 bits), Expect = 7.1e-20, Sum P(2) = 7.1e-20
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDD 73
+D KLF+GG+ +T E+ + DYFS YG+V I D TG++RGF F+ + V +
Sbjct: 3 SDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFA-DPCVSE 61
Query: 74 LLAAGDHYIGNKKIDPKRVTKR 95
+ H I + ++ K+ R
Sbjct: 62 RVIMDKHIIDGRTVEAKKAVPR 83
Score = 137 (53.3 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 27/74 (36%), Positives = 47/74 (63%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GG++ + E+ +RDYFS YG + E D++ +GF FI F D V+++V+ +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 162 PKQVICGKEVDVKR 175
K +I G+ V+ K+
Sbjct: 67 -KHIIDGRTVEAKK 79
>UNIPROTKB|D4A6Z0 [details] [associations]
symbol:D4A6Z0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00948011
ProteinModelPortal:D4A6Z0 Ensembl:ENSRNOT00000067831 Uniprot:D4A6Z0
Length = 176
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 51/150 (34%), Positives = 84/150 (56%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T + + ++F ++ + + DP T +SRGF FV Y+ + VD +
Sbjct: 13 RKLFIGGLSFETTDDSLREHF-KWDTLTDCVVMRDPQTERSRGFGFV-YSCVEEVDAAMC 70
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + ++PKR R + +K KIFVGG+ + E ++RDYF +YG+I
Sbjct: 71 ARPHKVDGHVVEPKRAISREDSVKPGAHLMVKKIFVGGIKEDTEEYNLRDYF-EYGNIKT 129
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVL 159
+ D+ K+GF F++FDD + D+++
Sbjct: 130 IEVVEDRQSGKKRGFAFLTFDDHDTVDKIV 159
Score = 137 (53.3 bits), Expect = 7.1e-09, P = 7.1e-09
Identities = 24/62 (38%), Positives = 40/62 (64%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGG+ +T E + DYF +YG +++I + D +G+ RGFAF+T+ VD ++
Sbjct: 102 KKIFVGGIKEDTEEYNLRDYF-EYGNIKTIEVVEDRQSGKKRGFAFLTFDDHDTVDKIVG 160
Query: 77 AG 78
G
Sbjct: 161 RG 162
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 165 (63.1 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 34/90 (37%), Positives = 52/90 (57%)
Query: 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
GPGR RK+FVGGL + E + YF Q+G + + D T + RGF F+TY +++
Sbjct: 103 GPGRT--RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEE 160
Query: 70 AVDDLLAAGDHYIGNKKIDPKR-VTKRVNP 98
AV+ +L H + K ++ KR V K ++P
Sbjct: 161 AVEKVLLKTFHELNGKMVEVKRAVPKELSP 190
Score = 151 (58.2 bits), Expect = 1.1e-19, Sum P(3) = 1.1e-19
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
KIFVGGL + +TE D + YF Q+G+ T+ +D + +GF FI++D + ++VL
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168
Query: 162 PKQVICGKEVDVKR 175
+ GK V+VKR
Sbjct: 169 TFHELNGKMVEVKR 182
Score = 147 (56.8 bits), Expect = 1.1e-19, Sum P(3) = 1.1e-19
Identities = 29/83 (34%), Positives = 48/83 (57%)
Query: 13 RNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVD 72
++D KLF+GG+ +T E+ + +YFS +GEV I D TG++RGF FV + AV
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFA-DPAVA 60
Query: 73 DLLAAGDHYIGNKKIDPKRVTKR 95
+++ H I + ++ K+ R
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPR 83
Score = 115 (45.5 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GG++ + E+ +++YFS +G + E D++ +GF F+ F D VA+ V+
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 162 PKQVICGKEVDVKR 175
K I G+ V+ K+
Sbjct: 67 -KHNIDGRLVEAKK 79
Score = 40 (19.1 bits), Expect = 1.1e-19, Sum P(3) = 1.1e-19
Identities = 10/49 (20%), Positives = 15/49 (30%)
Query: 294 EEANYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKYREAAAY 342
E +GY + GY G AP++S+ Y
Sbjct: 374 ENVKFGYGGNGESGFGLGTGGYAARNPGANKAAPSSSFSSASATNNTGY 422
>MGI|MGI:1924384 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IDA]
[GO:0017091 "AU-rich element binding" evidence=ISO;IDA] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924384
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 GO:GO:0070935 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 CTD:10949
KO:K12894 OrthoDB:EOG4W6NX4 EMBL:AK019388 EMBL:AC165251
IPI:IPI00109813 RefSeq:NP_084148.1 UniGene:Mm.490274
ProteinModelPortal:Q9CX86 SMR:Q9CX86 STRING:Q9CX86
PhosphoSite:Q9CX86 PaxDb:Q9CX86 PRIDE:Q9CX86
Ensembl:ENSMUST00000007980 GeneID:77134 KEGG:mmu:77134
UCSC:uc007qtf.2 InParanoid:Q9CX86 OMA:EDNQHAL ChiTaRS:HNRNPA0
NextBio:346544 Bgee:Q9CX86 Genevestigator:Q9CX86 Uniprot:Q9CX86
Length = 305
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 52/165 (31%), Positives = 86/165 (52%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
KLF+GGL+ T E + +F +G + + +P T +SR F FVTY+ + D +AA
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 78 GDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITEF 130
H + ++ KR R + + K+FVGGL ++ E D+ ++FSQ+G++ +
Sbjct: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKA 127
Query: 131 QQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ DK K+GF F+ F + AD+ I G V+VK+
Sbjct: 128 EIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKK 172
Score = 139 (54.0 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 8 TAGPGRNDE-RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYT 66
+A PG + + +KLFVGGL + E ++ ++FSQ+G VE I D +G+ RGF FV +
Sbjct: 88 SARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQ 147
Query: 67 TQKAVDDLLAAGDHYIGNKKIDPKRVTKR 95
+ A D H I +++ K+ +
Sbjct: 148 SHDAADKAAVVKFHPIQGHRVEVKKAVPK 176
>UNIPROTKB|F1M4M4 [details] [associations]
symbol:F1M4M4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00558004
Ensembl:ENSRNOT00000049169 Uniprot:F1M4M4
Length = 255
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 47/159 (29%), Positives = 81/159 (50%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T E+ + +F Q+ + + + DP T +SRG F TYTT + +D +
Sbjct: 19 RKLFIGGLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSRGSGFDTYTTVEEMDAAMN 78
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDK 136
A H + + + + + L KIF+ G+ + E +RDYF QY I + D+
Sbjct: 79 ARPHKVDGRVVSREDSQRPGAHLTVKIFISGIKEDTEEHHLRDYFEQYRKIEVIEIMTDR 138
Query: 137 SKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
K+ F F++FD+ + D++ + G +V++
Sbjct: 139 GSRKKRDFAFVTFDEHDSVDKIFIQKYHTVNGHNCEVRK 177
Score = 128 (50.1 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKA 70
PG + K+F+ G+ +T E + DYF QY ++E I I D + + R FAFVT+ +
Sbjct: 97 PGAHLTVKIFISGIKEDTEEHHLRDYFEQYRKIEVIEIMTDRGSRKKRDFAFVTFDEHDS 156
Query: 71 VDDLLAAGDHYIGNKKIDPKRVTKR 95
VD + H + + ++ +
Sbjct: 157 VDKIFIQKYHTVNGHNCEVRKALSK 181
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 46/116 (39%), Positives = 66/116 (56%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
K+F+GGL T + DYFS++GE+ + DP T +SRGF FVT+ +VD +L
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 78 GDHYIGNKKIDPK-RVTKRVNPLKC----KIFVGGLTTEITEQDVRDYFSQYGSIT 128
H + +K IDPK +R P KIFVGGL+ +DV+ YF Q+G ++
Sbjct: 78 PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVS 133
Score = 131 (51.2 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GGL+ + + +RDYFS++G I E D + +GF F++F D D+VL
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 162 PKQVICGKEVDVK 174
P + K +D K
Sbjct: 78 PHHELDSKTIDPK 90
>GENEDB_PFALCIPARUM|PFD0700c [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070 EMBL:AL844503
HSSP:Q14103 RefSeq:XP_001351452.1 ProteinModelPortal:Q8I1U3
EnsemblProtists:PFD0700c:mRNA GeneID:812564 KEGG:pfa:PFD0700c
EuPathDB:PlasmoDB:PF3D7_0414500 HOGENOM:HOG000282694
ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 230 (86.0 bits), Expect = 4.3e-19, P = 4.3e-19
Identities = 54/165 (32%), Positives = 87/165 (52%)
Query: 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDD 73
N+ K F+GG+ + K I +YF QYG V+ + I D T ++RGFAFVT + +
Sbjct: 111 NEPFKFFIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKER 170
Query: 74 LLAAGDHYIGNKKIDPKRVTKRV-NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQ 132
+L H + K++D + + ++ KIFVGGL T+ + YFS +G I Q
Sbjct: 171 ILR-DTHELNGKRVDVREENNTTPSDIQRKIFVGGLNYYWTKDTLESYFSTFGEIDVVQI 229
Query: 133 PFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVK 177
D S + F F+ F ++N +VLK+ + I K V+V++ +
Sbjct: 230 VLDSS-GRSRCFGFVVFSNENSVAKVLKHKRHKIYDKMVEVRKAE 273
Score = 121 (47.7 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 26/87 (29%), Positives = 49/87 (56%)
Query: 16 ERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLL 75
+RK+FVGGL+ + + YFS +GE++ + I D +G+SR F FV ++ + +V +L
Sbjct: 197 QRKIFVGGLNYYWTKDTLESYFSTFGEIDVVQIVLDS-SGRSRCFGFVVFSNENSVAKVL 255
Query: 76 AAGDHYIGNKKIDPKRVTKRVNPLKCK 102
H I +K ++ ++ + + K
Sbjct: 256 KHKRHKIYDKMVEVRKAEPKKPKMSIK 282
>UNIPROTKB|Q8I1U3 [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0016070 "RNA
metabolic process" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070
EMBL:AL844503 HSSP:Q14103 RefSeq:XP_001351452.1
ProteinModelPortal:Q8I1U3 EnsemblProtists:PFD0700c:mRNA
GeneID:812564 KEGG:pfa:PFD0700c EuPathDB:PlasmoDB:PF3D7_0414500
HOGENOM:HOG000282694 ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 230 (86.0 bits), Expect = 4.3e-19, P = 4.3e-19
Identities = 54/165 (32%), Positives = 87/165 (52%)
Query: 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDD 73
N+ K F+GG+ + K I +YF QYG V+ + I D T ++RGFAFVT + +
Sbjct: 111 NEPFKFFIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKER 170
Query: 74 LLAAGDHYIGNKKIDPKRVTKRV-NPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQ 132
+L H + K++D + + ++ KIFVGGL T+ + YFS +G I Q
Sbjct: 171 ILR-DTHELNGKRVDVREENNTTPSDIQRKIFVGGLNYYWTKDTLESYFSTFGEIDVVQI 229
Query: 133 PFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVK 177
D S + F F+ F ++N +VLK+ + I K V+V++ +
Sbjct: 230 VLDSS-GRSRCFGFVVFSNENSVAKVLKHKRHKIYDKMVEVRKAE 273
Score = 121 (47.7 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 26/87 (29%), Positives = 49/87 (56%)
Query: 16 ERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLL 75
+RK+FVGGL+ + + YFS +GE++ + I D +G+SR F FV ++ + +V +L
Sbjct: 197 QRKIFVGGLNYYWTKDTLESYFSTFGEIDVVQIVLDS-SGRSRCFGFVVFSNENSVAKVL 255
Query: 76 AAGDHYIGNKKIDPKRVTKRVNPLKCK 102
H I +K ++ ++ + + K
Sbjct: 256 KHKRHKIYDKMVEVRKAEPKKPKMSIK 282
>UNIPROTKB|F1MW51 [details] [associations]
symbol:F1MW51 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02008023 IPI:IPI00696055
Ensembl:ENSBTAT00000016590 Uniprot:F1MW51
Length = 274
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 53/151 (35%), Positives = 80/151 (52%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + F Q G + ++ DP +SRGF FVTY T + V
Sbjct: 14 RKLFIGGLSFETTDESLRSRFEQGGTLTDCVVRRDPNAKRSRGFGFVTYATVEEVK---- 69
Query: 77 AGDHYIGNKKIDPKRVTKRVN--------PLKCKIFVGGLTTEITEQDVRDYFSQYGSIT 128
G ++ + ++PK R + P+K K+FVGG+ + E +RDYF QYG I
Sbjct: 70 -GRPHVDERVVEPKWAISREDSQRPGAHLPVK-KVFVGGIKEDTEEHHLRDYFEQYGRIE 127
Query: 129 EFQQPFDKSKNMKKGFCFISFDDQNVADQVL 159
+ D+ K+GF FI FDD + D+++
Sbjct: 128 VIEIMTDQGSG-KRGFAFILFDDHDSIDKIV 157
Score = 137 (53.3 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF QYG +E I I D +G+ RGFAF+ +
Sbjct: 93 PGAHLPVKKVFVGGIKEDTEEHHLRDYFEQYGRIEVIEIMTDQGSGK-RGFAFILFDDHD 151
Query: 70 AVDDLLAAGDHYIGN 84
++D ++ H GN
Sbjct: 152 SIDKIVIQKYH-TGN 165
>UNIPROTKB|F1LW71 [details] [associations]
symbol:F1LW71 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00563710 ProteinModelPortal:F1LW71
Ensembl:ENSRNOT00000048553 Uniprot:F1LW71
Length = 260
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 55/166 (33%), Positives = 84/166 (50%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF GGL+ T ++ + +F Q+G + + DP T +SRGF FVTY + VD
Sbjct: 21 RKLFTGGLNFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAPVEEVD---- 76
Query: 77 AGDHYIGNKKIDPKRVTKRVN---P---LKCK-IFVGGLTTEITEQDVRDYFSQYGSITE 129
DH +++ R R + P L K IFVGG+ + E +RDY QYG I
Sbjct: 77 RKDHTRWMEELWNLRAVSREDSQTPGAHLTVKKIFVGGIKEDTEEHHLRDYSEQYGKIEV 136
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K GF F++FDD + D+++ + G +V++
Sbjct: 137 VEIMTDRGSGKKGGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 182
Score = 142 (55.0 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 31/114 (27%), Positives = 54/114 (47%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DY QYG++E + I D +G+ GFAFVT+
Sbjct: 101 PGAHLTVKKIFVGGIKEDTEEHHLRDYSEQYGKIEVVEIMTDRGSGKKGGFAFVTFDDHD 160
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQ 123
+VD ++ H + + ++ + G + D +Y +Q
Sbjct: 161 SVDKIVIQKYHTVNGHNCEVRKALSKQEMASASFSQRGRSGSRNYNDFGNYNNQ 214
>UNIPROTKB|F1M165 [details] [associations]
symbol:F1M165 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362409 Ensembl:ENSRNOT00000029622
Uniprot:F1M165
Length = 288
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 48/160 (30%), Positives = 81/160 (50%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T E+ + +F Q+ + + + DP T +SRG F TYTT + +D +
Sbjct: 15 RKLFIGGLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSRGSGFDTYTTVEEMDAAMN 74
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKCKIF-VGGLTTEITEQDVRDYFSQYGSITEFQQPFD 135
A H + + + + + L KIF V G+ + E +RDYF QY I + D
Sbjct: 75 ARPHKVDGRVVSREDSQRPGAHLTVKIFIVSGIKEDTEEHHLRDYFEQYRKIEVIEIMTD 134
Query: 136 KSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ K+ F F++FD+ + D++ + G +V++
Sbjct: 135 RGSRKKRDFAFVTFDEHDSVDKIFIQKYHTVNGHNCEVRK 174
Score = 120 (47.3 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 26/86 (30%), Positives = 43/86 (50%)
Query: 11 PGRNDERKLF-VGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + K+F V G+ +T E + DYF QY ++E I I D + + R FAFVT+
Sbjct: 93 PGAHLTVKIFIVSGIKEDTEEHHLRDYFEQYRKIEVIEIMTDRGSRKKRDFAFVTFDEHD 152
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
+VD + H + + ++ +
Sbjct: 153 SVDKIFIQKYHTVNGHNCEVRKALSK 178
>UNIPROTKB|F1MTY3 [details] [associations]
symbol:F1MTY3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00699446 Ensembl:ENSBTAT00000013110 Uniprot:F1MTY3
Length = 301
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 53/166 (31%), Positives = 81/166 (48%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + + S + DP T SRGF FVTY T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHCSH----SPSCVMTDPNTKCSRGFRFVTYATVEEVDAAMN 69
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + KIF GG+ + E+ +RDYF G I
Sbjct: 70 ARPHKVDRRVVEPKRGVSREGSQRPGAHLTVKKIFAGGIKEDTEERHLRDYFENNGKIEV 129
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D S K+GF F++FDD + D+ + + G +V++
Sbjct: 130 IEIMTDPSSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNREVRK 175
Score = 154 (59.3 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 32/91 (35%), Positives = 53/91 (58%)
Query: 7 GTAGPGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTY 65
G+ PG + +K+F GG+ +T E+ + DYF G++E I I DP +G+ RGFAFVT+
Sbjct: 90 GSQRPGAHLTVKKIFAGGIKEDTEERHLRDYFENNGKIEVIEIMTDPSSGKKRGFAFVTF 149
Query: 66 TTQKAVDDLLAAGDHYI-GNKKIDPKRVTKR 95
+VD + H + G+ + K ++K+
Sbjct: 150 DDHDSVDKTVIQKYHTVNGHNREVRKALSKQ 180
>UNIPROTKB|D4AB76 [details] [associations]
symbol:D4AB76 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00558881 ProteinModelPortal:D4AB76
Ensembl:ENSRNOT00000043240 Uniprot:D4AB76
Length = 306
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 49/166 (29%), Positives = 81/166 (48%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
KLF+GGL T ++ + +F Q+G + + DP SRGF FVTYTT + +D + A
Sbjct: 15 KLFIGGLSFKTTDESLRSHFEQWGTLTDC-VMRDPNNKISRGFGFVTYTTVEELDAAMNA 73
Query: 78 GDHYIGNKKIDPKRVTKRVNPLK--CKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFD 135
H + ++PKR R + + + V + + E +F QYG I + D
Sbjct: 74 RPHKVDGGVVEPKRAVSREDSPRPGAHLTVKKIFVGVKEDTEGHHFEQYGKIEVIEIMTD 133
Query: 136 KSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFNPE 181
+ K+GF F++FDD + D ++ + G +V++ N E
Sbjct: 134 RGSGKKRGFAFVTFDDPDSVDTIVIQKYHTVNGHNCEVRKALSNQE 179
>UNIPROTKB|F1LYB2 [details] [associations]
symbol:F1LYB2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00563016
Ensembl:ENSRNOT00000051535 Uniprot:F1LYB2
Length = 261
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 50/165 (30%), Positives = 86/165 (52%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
KLF+G L T + + ++ ++ + + + DP +S GF FVTY+ + VD + A
Sbjct: 25 KLFIGYLSFETTDDSLREHSEKWTLTDCV-VMRDPLFERSSGFGFVTYSCVEEVDAAMCA 83
Query: 78 GDHYIGNKKIDPKRVTKR--VNP---LKCK-IFVGGLTTEITEQDVRDYFSQYGSITEFQ 131
H + + + P+ V++ V P L K IFVGG+ + E +++DYF +YG I
Sbjct: 84 RPHKVDGRVVGPRAVSREDSVKPGTHLTVKKIFVGGVREDREEYNLKDYFEKYGKIGTID 143
Query: 132 QPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRV 176
D+ K+GF F++FDD + D++ I G ++K+V
Sbjct: 144 VMEDRQSGKKRGFAFVTFDDLDTVDKIAVQKYHTINGHNCEMKKV 188
Score = 147 (56.8 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ + E + DYF +YG++ +I + D +G+ RGFAFVT+
Sbjct: 106 PGTHLTVKKIFVGGVREDREEYNLKDYFEKYGKIGTIDVMEDRQSGKKRGFAFVTFDDLD 165
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
VD + H I + K+V +
Sbjct: 166 TVDKIAVQKYHTINGHNCEMKKVLSK 191
>UNIPROTKB|E2RJS4 [details] [associations]
symbol:E2RJS4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03011786
Ensembl:ENSCAFT00000024319 Uniprot:E2RJS4
Length = 330
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 52/169 (30%), Positives = 83/169 (49%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+KLF+GGL T + + +F Q G + DP T SRGF FVTY T + VD
Sbjct: 28 QKLFIGGLSFETTNESLRSHFEQLGMLTDCVEMRDPNTKHSRGFGFVTYATMEEVDAATN 87
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLK--CKIFVGGLTTEITEQD--------VRDYFSQYGS 126
A H + ++ ++PKR R + + + + E E+D +RDYF QYG
Sbjct: 88 ARPHKV-DRVVEPKRAVSREDSQRPGAHLTMKKKEEEEEEEDDNNTEEYHLRDYFEQYGK 146
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
I + D+ K+GF F++FDD + D+++ + G +V++
Sbjct: 147 IEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 195
Score = 128 (50.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 27 NTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKK 86
NT E + DYF QYG++E I I D +G+ RGFAFVT+ +VD ++ H +
Sbjct: 131 NTEEYHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHN 190
Query: 87 IDPKRVTKR 95
+ ++ +
Sbjct: 191 CEVRKALSK 199
>UNIPROTKB|F1LW17 [details] [associations]
symbol:F1LW17 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00567724
Ensembl:ENSRNOT00000046658 ArrayExpress:F1LW17 Uniprot:F1LW17
Length = 249
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 53/177 (29%), Positives = 90/177 (50%)
Query: 7 GTAGPGRNDE-RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTY 65
G PG E RKLF+GGL T + + ++F ++G + K +SRGF F+TY
Sbjct: 21 GKHSPGTEKELRKLFIGGLSFETTDDSLREHFEKWGTLTDCGNK------RSRGFGFLTY 74
Query: 66 TTQKAVDDLLAAGDHYIGNKKIDPKRVTKR--VNP----LKCKIFVGGLTTEITEQDVRD 119
+ + VD + A H + + + V++ V P + K++VGG+ + E ++R
Sbjct: 75 SCVEEVDAAVCARPHKAAVRVVGKRAVSREDSVKPGAHLMVKKLYVGGIKEDTEEYNLRG 134
Query: 120 YFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRV 176
YF +YG I + + K+GF F++FDD + D++L+ I G +V +V
Sbjct: 135 YFKKYGKIETIEVMEGRQSGKKRGFAFVTFDDHDTVDKILQK-HHAINGNNCEVGKV 190
Score = 139 (54.0 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+KL+VGG+ +T E + YF +YG++E+I + +G+ RGFAFVT+ VD +L
Sbjct: 116 KKLYVGGIKEDTEEYNLRGYFKKYGKIETIEVMEGRQSGKKRGFAFVTFDDHDTVDKILQ 175
Query: 77 AGDHYIGNKKIDPKRVTKR 95
H I + +V +
Sbjct: 176 K-HHAINGNNCEVGKVLSK 193
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 154 (59.3 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 31/74 (41%), Positives = 45/74 (60%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
KIFVGGL + ITE + ++YF Q+G+I + +D + +GF FI+FD + D VL
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK 182
Query: 162 PKQVICGKEVDVKR 175
+ GK V+VKR
Sbjct: 183 TFHELNGKMVEVKR 196
Score = 146 (56.5 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 7 GTAGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYT 66
G G R +K+FVGGL + E E +YF Q+G + + + D T + RGF F+T+
Sbjct: 114 GNGGGART--KKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFD 171
Query: 67 TQKAVDDLLAAGDHYIGNKKIDPKRVTKR 95
++++VD +L H + K ++ KR +
Sbjct: 172 SEESVDMVLHKTFHELNGKMVEVKRAVPK 200
Score = 133 (51.9 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDD 73
+D KLF+GG+ +T E+ + +YF +YG++ I D TG++RGF F+ + +V +
Sbjct: 12 SDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFA-DPSVAE 70
Query: 74 LLAAGDHYIGNKKIDPKRVTKR 95
+ H I + ++ K+ R
Sbjct: 71 RVIMDKHIIDGRTVEAKKAVPR 92
Score = 132 (51.5 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 25/74 (33%), Positives = 48/74 (64%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GG++ + E+ +++YF +YG + E D++ +GF FI F D +VA++V+ +
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75
Query: 162 PKQVICGKEVDVKR 175
K +I G+ V+ K+
Sbjct: 76 -KHIIDGRTVEAKK 88
>UNIPROTKB|F1MH29 [details] [associations]
symbol:F1MH29 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00839326 Ensembl:ENSBTAT00000046159 Uniprot:F1MH29
Length = 241
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 51/150 (34%), Positives = 76/150 (50%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T ++ + + S + DP T SRGF FVTY T + VD +
Sbjct: 13 RKLFIGGLSFETTDESLRSHCSH----SPSCVMTDPNTKCSRGFRFVTYATVEEVDAAMN 68
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + KIF GG+ + E+ +RDYF + G I
Sbjct: 69 ARPHKVDRRVVEPKRGVSREGSQRPGAHLTVKKIFAGGIKEDTEERHLRDYFEKPGKIEV 128
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVL 159
+ D S K+GF F++FDD + D+ +
Sbjct: 129 IEIMTDPSSGKKRGFAFVTFDDHDSVDKTV 158
Score = 150 (57.9 bits), Expect = 9.1e-09, P = 9.1e-09
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 7 GTAGPGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTY 65
G+ PG + +K+F GG+ +T E+ + DYF + G++E I I DP +G+ RGFAFVT+
Sbjct: 89 GSQRPGAHLTVKKIFAGGIKEDTEERHLRDYFEKPGKIEVIEIMTDPSSGKKRGFAFVTF 148
Query: 66 TTQKAVDDLLAAGDHYI 82
+VD + H +
Sbjct: 149 DDHDSVDKTVIQKYHTV 165
>UNIPROTKB|D4ABW2 [details] [associations]
symbol:D4ABW2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00781059 ProteinModelPortal:D4ABW2
Ensembl:ENSRNOT00000044642 Uniprot:D4ABW2
Length = 279
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 56/168 (33%), Positives = 87/168 (51%)
Query: 17 RKLFVGGLH-RNTGEK-EINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDL 74
+KLFVGGL T E + +F Q+G + + DP T +SRGF FVTY T + VD
Sbjct: 14 QKLFVGGLSFEATLESLSLTSHFEQWGTLTDHVVMRDPNTKRSRGFGFVTYATVEEVDAA 73
Query: 75 LAAGDHYIGNKKIDPKRVTKRVN--P-----LKCKIFVGGLTTEITEQDVRDYFSQYGSI 127
+ A H +G + ++PKR + + P +K KIFVGG+ + E +RDY Q G
Sbjct: 74 MNARPHKVGGRAVEPKRAGSKDSQRPGAHLTMK-KIFVGGVKEDTEEHRLRDYLEQNGKT 132
Query: 128 TEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ K+ F F++FD N D+++ + G +V++
Sbjct: 133 EVTEITTDRGSG-KRDFAFVTFD--NSVDKIVIQKYSTVNGHNCEVRK 177
>UNIPROTKB|H0YHB7 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC003982 HGNC:HGNC:7330 Ensembl:ENST00000546985 Uniprot:H0YHB7
Length = 233
Score = 183 (69.5 bits), Expect = 6.8e-18, Sum P(2) = 6.8e-18
Identities = 40/115 (34%), Positives = 64/115 (55%)
Query: 68 QKAVDDLLAAGDHYIGNKKIDPK-RVTKRVNPLKC----KIFVGGLTTEITEQDVRDYFS 122
Q VD +LA H + +K IDPK +R P KIFVGGL+ T +DV+ YF
Sbjct: 3 QAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFE 62
Query: 123 QYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVK 177
Q+G + + FDK+ N +GF F++F+ +++ ++V + I K V+ K+ +
Sbjct: 63 QFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 117
Score = 144 (55.7 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGGL NT +++ YF Q+G+V+ + D T + RGF FVT+ ++ V+ +
Sbjct: 41 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 100
Query: 77 AGDHYIGNKKIDPKR 91
H I NK ++ K+
Sbjct: 101 IHFHEINNKMVECKK 115
Score = 50 (22.7 bits), Expect = 6.8e-18, Sum P(2) = 6.8e-18
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 309 ATAYPGYDYSAM--GYAY--PA-PATSYGGGKYREAAA 341
AT Y Y+ + GY Y PA P T+YG AAA
Sbjct: 156 ATTYASRSYTGLAPGYTYQFPAIPLTAYGPMAAAAAAA 193
>UNIPROTKB|F1LZL9 [details] [associations]
symbol:F1LZL9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 EMBL:AC109707 IPI:IPI00780768
Ensembl:ENSRNOT00000045359 Uniprot:F1LZL9
Length = 247
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 49/166 (29%), Positives = 85/166 (51%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
KLF+GGL T K +F Q G + ++ DP T +SRGF FVTY T + VD + A
Sbjct: 1 KLFIGGLSFETTYKNRRSHFEQRGTLTDCVVRRDPNTKRSRGFGFVTYATVEEVDAAMNA 60
Query: 78 GDHYIGNKKIDPKRVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKS 137
H + + ++P R R + + FV G+ + E +++ + QYG I + D+
Sbjct: 61 RPHKVDARVVEPNRAVSREDSQRPG-FVCGIKEDTEEHHLQNNYEQYGQIEVIEIMTDRG 119
Query: 138 KNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRV--KFNPE 181
K+ F F++F D ++ D+++ + G +V++ K +P+
Sbjct: 120 LGKKRDFAFVTFHDHDL-DEIVLQKYHNVHGYNCEVRKALSKQSPD 164
Score = 109 (43.4 bits), Expect = 0.00088, P = 0.00088
Identities = 25/87 (28%), Positives = 45/87 (51%)
Query: 13 RND-ERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAV 71
R D +R FV G+ +T E + + + QYG++E I I D G+ R FAFVT+ +
Sbjct: 78 REDSQRPGFVCGIKEDTEEHHLQNNYEQYGQIEVIEIMTDRGLGKKRDFAFVTFHDHD-L 136
Query: 72 DDLLAAGDHYIGNKKIDPKRVTKRVNP 98
D+++ H + + ++ + +P
Sbjct: 137 DEIVLQKYHNVHGYNCEVRKALSKQSP 163
>UNIPROTKB|J9PBP6 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03014735
Ensembl:ENSCAFT00000045257 OMA:LAQTRHE Uniprot:J9PBP6
Length = 471
Score = 222 (83.2 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 57/164 (34%), Positives = 88/164 (53%)
Query: 33 INDYFSQYGEVESISIKNDPYTGQSR--GFAFVTYTTQKAVDDLLAAGDHYIGNK--KID 88
+ +YF Q+GEV+ + DP T +SR GF FVT+ Q VD +LA H + +K +ID
Sbjct: 123 LREYFGQFGEVKECLVMRDPLTKRSRCRGFGFVTFMDQAGVDKVLAQSRHELDSKTVQID 182
Query: 89 PK-RVTKRVNPL------KCKIFVGGLTTEITEQDVRDYFSQYGSIT--EFQQPFDKSKN 139
PK +R P KIFVGGL+ T +DV+ YF Q+ + + FDK+ N
Sbjct: 183 PKVAFPRRAQPKVQMVTRTKKIFVGGLSVNTTVEDVKQYFEQFEKVQVDDAMLMFDKTTN 242
Query: 140 MKKG--FCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFNPE 181
+G F F++F+ +++ ++V + I K V V+ K P+
Sbjct: 243 RHRGVGFGFVTFESEDIVEKVCEIHFHEINNKMVQVECKKAQPK 286
>UNIPROTKB|F1M6M1 [details] [associations]
symbol:F1M6M1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00563231
Ensembl:ENSRNOT00000040517 Uniprot:F1M6M1
Length = 253
Score = 191 (72.3 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 41/122 (33%), Positives = 64/122 (52%)
Query: 54 TGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVG 106
T +SRGF FVT T+ + VD + A H + + ++PKR R + + KIFVG
Sbjct: 1 TKRSRGFGFVTCTSVEKVDATMNARPHKVDGRVVEPKRAMSREDSQRPDAHLTVKKIFVG 60
Query: 107 GLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVI 166
+ + E +RDYF QYG I + D+ K+GF F++FDD + D+++ +
Sbjct: 61 SIKEDTEEHHLRDYFEQYGKIELIEIMADRGSEKKRGFAFVTFDDHDSVDKIVTQKYHTV 120
Query: 167 CG 168
G
Sbjct: 121 NG 122
Score = 143 (55.4 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVG + +T E + DYF QYG++E I I D + + RGFAFVT+ +VD ++
Sbjct: 55 KKIFVGSIKEDTEEHHLRDYFEQYGKIELIEIMADRGSEKKRGFAFVTFDDHDSVDKIVT 114
Query: 77 AGDHYI-GNKKIDPKR 91
H + G+ K + ++
Sbjct: 115 QKYHTVNGHHKCEVRK 130
Score = 38 (18.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 297 NYG-YTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGK 335
N+G G++ A ++ G + GY + ++SYG G+
Sbjct: 215 NFGPMKGGNFGARSS---GPNDGGGGYGGSSSSSSYGSGR 251
>UNIPROTKB|I3LP80 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
EMBL:CU627987 Ensembl:ENSSSCT00000027195 OMA:NVVEMEM Uniprot:I3LP80
Length = 231
Score = 177 (67.4 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 33/79 (41%), Positives = 51/79 (64%)
Query: 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAV 71
G+ +K+FVGGL +T E++I +YF +GE+E+I + D T + RGF F+TYT ++ V
Sbjct: 20 GKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPV 79
Query: 72 DDLLAAGDHYIGNKKIDPK 90
LL + H IG+ K + K
Sbjct: 80 KKLLESRYHQIGSGKCEIK 98
Score = 175 (66.7 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
Identities = 37/103 (35%), Positives = 61/103 (59%)
Query: 79 DHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDK 136
+H + K IDPKR K P K K+FVGGL+ + +E+ +++YF +G I + P D
Sbjct: 2 EHKLDGKLIDPKRAKALKGKEPPK-KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDT 60
Query: 137 SKNMKKGFCFISFDDQNVADQVLKNP-KQVICGK-EVDVKRVK 177
N ++GFCFI++ D+ ++L++ Q+ GK E+ V + K
Sbjct: 61 KTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 103
Score = 55 (24.4 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 16/47 (34%), Positives = 18/47 (38%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMGYA---YPAPATSYGG-GKYREA 339
NY G Y+ Y GYDY+ Y Y Y G G Y A
Sbjct: 152 NYNSAYGGDQNYS-GYGGYDYTGYNYGNYGYGQGYADYSGYGNYNSA 197
Score = 49 (22.3 bits), Expect = 5.3e-17, Sum P(2) = 5.3e-17
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGK 335
NY G Y+ Y GYDY+ GY Y +YG G+
Sbjct: 193 NYNSAYGGDQNYS-GYGGYDYT--GYNYG----NYGYGQ 224
Score = 47 (21.6 bits), Expect = 8.6e-17, Sum P(2) = 8.6e-17
Identities = 18/45 (40%), Positives = 20/45 (44%)
Query: 298 YGYTAGSYDAYATAYPGY-DYSAMG-Y--AYPAPA--TSYGGGKY 336
Y YT +Y Y GY DYS G Y AY + YGG Y
Sbjct: 169 YDYTGYNYGNYGYGQ-GYADYSGYGNYNSAYGGDQNYSGYGGYDY 212
>RGD|1564416 [details] [associations]
symbol:RGD1564416 "similar to Heterogeneous nuclear
ribonucleoprotein A1 (Helix-destabilizing protein
(Topoisomerase-inhibitor suppressed)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1564416 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00388666 Ensembl:ENSRNOT00000037037 Uniprot:F1LZ88
Length = 314
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 52/174 (29%), Positives = 85/174 (48%)
Query: 10 GPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
G + ER + GL T ++ + + + + DP T +SRGF FV YTT +
Sbjct: 7 GREKGRERVYLIRGLSFETTDESLKTMEN----TSNFLVMRDPNTKRSRGFGFVPYTTVE 62
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVT------KRVN-PLKCK-IFVGGLTTEITEQDVRDYF 121
VD + A H +G + + PKRV+ +R PL K + VGG+ + E +RDYF
Sbjct: 63 EVDATMNARPHKVGGRVVGPKRVSCGMEKSQRPGAPLTMKKVLVGGINEDTEEHHLRDYF 122
Query: 122 SQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
YG + D+ K+GF F++FDD + D+++ + G +V++
Sbjct: 123 EWYGKTEVIEIMTDRGSVKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 176
Score = 132 (51.5 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+ VGG++ +T E + DYF YG+ E I I D + + RGFAFVT+ +VD ++
Sbjct: 102 KKVLVGGINEDTEEHHLRDYFEWYGKTEVIEIMTDRGSVKKRGFAFVTFDDHDSVDKIVI 161
Query: 77 AGDHYIGNKKIDPKRVTKR 95
H + + ++ +
Sbjct: 162 QKYHTVNGHNCEVRKALSK 180
>UNIPROTKB|F1RVD1 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 EMBL:CU627987
RefSeq:XP_003129409.3 UniGene:Ssc.55768 Ensembl:ENSSSCT00000010127
GeneID:100511704 KEGG:ssc:100511704 Uniprot:F1RVD1
Length = 216
Score = 177 (67.4 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 33/79 (41%), Positives = 51/79 (64%)
Query: 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAV 71
G+ +K+FVGGL +T E++I +YF +GE+E+I + D T + RGF F+TYT ++ V
Sbjct: 24 GKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPV 83
Query: 72 DDLLAAGDHYIGNKKIDPK 90
LL + H IG+ K + K
Sbjct: 84 KKLLESRYHQIGSGKCEIK 102
Score = 176 (67.0 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 38/108 (35%), Positives = 63/108 (58%)
Query: 74 LLAAGDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQ 131
+L +H + K IDPKR K P K K+FVGGL+ + +E+ +++YF +G I +
Sbjct: 1 VLELKEHKLDGKLIDPKRAKALKGKEPPK-KVFVGGLSPDTSEEQIKEYFGAFGEIENIE 59
Query: 132 QPFDKSKNMKKGFCFISFDDQNVADQVLKNP-KQVICGK-EVDVKRVK 177
P D N ++GFCFI++ D+ ++L++ Q+ GK E+ V + K
Sbjct: 60 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 107
Score = 54 (24.1 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 295 EANY-GYTAGSYDAYATAYPGYDYSAMGYA-YPAPATSYG 332
+ NY GY G YD Y Y Y GYA Y ++YG
Sbjct: 164 DQNYSGY--GGYDYTGYNYGNYGYG-QGYADYSGQQSTYG 200
Score = 49 (22.3 bits), Expect = 5.3e-17, Sum P(2) = 5.3e-17
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGK 335
NY G Y+ Y GYDY+ GY Y +YG G+
Sbjct: 156 NYNSAYGGDQNYS-GYGGYDYT--GYNYG----NYGYGQ 187
>UNIPROTKB|F5H6R6 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048255
EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI01012829
ProteinModelPortal:F5H6R6 SMR:F5H6R6 Ensembl:ENST00000541060
ArrayExpress:F5H6R6 Bgee:F5H6R6 Uniprot:F5H6R6
Length = 201
Score = 173 (66.0 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 79 DHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDK 136
+H + K IDPKR K P+K KIFVGGL+ + E+ +R+YF +G + + P D
Sbjct: 5 EHKLNGKVIDPKRAKAMKTKEPVK-KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN 63
Query: 137 SKNMKKGFCFISFDDQNVADQVLK 160
N ++GFCFI+F ++ ++++
Sbjct: 64 KTNKRRGFCFITFKEEEPVKKIME 87
Score = 150 (57.9 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGGL +T E++I +YF +GEVESI + D T + RGF F+T+ ++ V ++
Sbjct: 28 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 87
Query: 77 AGDHYIGNKKIDPK 90
H +G K + K
Sbjct: 88 KKYHNVGLSKCEIK 101
Score = 57 (25.1 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 17/56 (30%), Positives = 22/56 (39%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMG--YAYPAPATSYGG-GKYREAAAYPR-HAPY 348
NYGY + Y Y GYDY+ Y Y + G GK + + PY
Sbjct: 150 NYGYNSQGYGGYG----GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 201
Score = 41 (19.5 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKYREAAAYPRHAPY 348
N GY+ +Y + Y Y Y++ GY YGG Y Y + Y
Sbjct: 137 NQGYS--NY--WNQGYGNYGYNSQGYG------GYGGYDYTGYNNYYGYGDY 178
>UNIPROTKB|F1RVC9 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 EMBL:CU627987
Ensembl:ENSSSCT00000010129 OMA:DASSHGW Uniprot:F1RVC9
Length = 202
Score = 173 (66.0 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 79 DHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDK 136
+H + K IDPKR K P+K KIFVGGL+ + E+ +R+YF +G + + P D
Sbjct: 6 EHKLNGKVIDPKRAKAMKTKEPVK-KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN 64
Query: 137 SKNMKKGFCFISFDDQNVADQVLK 160
N ++GFCFI+F ++ ++++
Sbjct: 65 KTNKRRGFCFITFKEEEPVKKIME 88
Score = 150 (57.9 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGGL +T E++I +YF +GEVESI + D T + RGF F+T+ ++ V ++
Sbjct: 29 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 88
Query: 77 AGDHYIGNKKIDPK 90
H +G K + K
Sbjct: 89 KKYHNVGLSKCEIK 102
Score = 57 (25.1 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 17/56 (30%), Positives = 22/56 (39%)
Query: 297 NYGYTAGSYDAYATAYPGYDYSAMG--YAYPAPATSYGG-GKYREAAAYPR-HAPY 348
NYGY + Y Y GYDY+ Y Y + G GK + + PY
Sbjct: 151 NYGYNSPGYGGYG----GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 202
>UNIPROTKB|F1LUE7 [details] [associations]
symbol:F1LUE7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00566822
Ensembl:ENSRNOT00000052211 ArrayExpress:F1LUE7 Uniprot:F1LUE7
Length = 256
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 49/166 (29%), Positives = 86/166 (51%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL T + + ++F ++G + K +SRGF F+TY+ + VD +
Sbjct: 2 RKLFIGGLSFETTDDSLREHFEKWGTLTDCGNK------RSRGFGFLTYSCVEEVDAAVC 55
Query: 77 AGDHYIGNKKIDPKRVTKR--VNP----LKCKIFVGGLTTEITEQDVRDYFSQYGSITEF 130
A H + + + V++ V P + K++VGG+ + E ++R YF +YG I
Sbjct: 56 ARPHKAAVRVVGKRAVSREDSVKPGAHLMVKKLYVGGIKEDTEEYNLRGYFKKYGKIETI 115
Query: 131 QQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRV 176
+ + K+GF F++FDD + D++L+ I G +V +V
Sbjct: 116 EVMEGRQSGKKRGFAFVTFDDHDTVDKILQK-HHAINGNNCEVGKV 160
Score = 139 (54.0 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+KL+VGG+ +T E + YF +YG++E+I + +G+ RGFAFVT+ VD +L
Sbjct: 86 KKLYVGGIKEDTEEYNLRGYFKKYGKIETIEVMEGRQSGKKRGFAFVTFDDHDTVDKILQ 145
Query: 77 AGDHYIGNKKIDPKRVTKR 95
H I + +V +
Sbjct: 146 K-HHAINGNNCEVGKVLSK 163
>UNIPROTKB|E1BK61 [details] [associations]
symbol:E1BK61 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02005585 IPI:IPI00689266
Ensembl:ENSBTAT00000016960 Uniprot:E1BK61
Length = 270
Score = 191 (72.3 bits), Expect = 4.0e-17, Sum P(2) = 4.0e-17
Identities = 48/165 (29%), Positives = 84/165 (50%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+ GL T ++ ++ +F + G+ + + P T SRGF FVT +++ +
Sbjct: 10 RKLFIRGLSFETIDESLSSHF-EMGKAHRLVVMRVPNTKHSRGFGFVTKPWWRSLA-AMN 67
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + + KIFVGG+ E +R+ F QYG I +
Sbjct: 68 ARPHKVDERVVEPKRDVSRGDSQRPHAHLTVKKIFVGGIQEGTEEHHLRNNFEQYGKI-D 126
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVK 174
+ D+ + K+GF F +FDD + D+++ + G +V+
Sbjct: 127 IEIMTDRGSDKKRGFAFETFDDHDSVDKIVIQKYHTVNGHNCEVR 171
Score = 117 (46.2 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGG+ T E + + F QYG+++ I I D + + RGFAF T+ +VD ++
Sbjct: 99 KKIFVGGIQEGTEEHHLRNNFEQYGKID-IEIMTDRGSDKKRGFAFETFDDHDSVDKIVI 157
Query: 77 AGDHYIGNKKIDPKRVTKR 95
H + + + +
Sbjct: 158 QKYHTVNGHNCEVREALSK 176
Score = 52 (23.4 bits), Expect = 4.0e-17, Sum P(2) = 4.0e-17
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 298 YGYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGG-GKY 336
YG + Y+ + + GY GY + YGG G Y
Sbjct: 189 YGGSGDGYNGFGKKHRGYGSGGQGYGNQG--SGYGGSGSY 226
>UNIPROTKB|F1PP12 [details] [associations]
symbol:F1PP12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03007418
ProteinModelPortal:F1PP12 Ensembl:ENSCAFT00000029311 Uniprot:F1PP12
Length = 229
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 49/165 (29%), Positives = 81/165 (49%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
+LF+ GL+ T + + +F Q+G + + DP T SR F FV Y T + VD +
Sbjct: 15 RLFIRGLNFETTNESLRGHFKQWGILMDCVVMIDPNTRHSRRFGFVMYATVEKVDAAVNV 74
Query: 78 GDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITEF 130
H + N+ PK R + + K FVGG+ + E +R YF QYG I
Sbjct: 75 RPHKV-NRIGKPKMAVSREDSQRPGAHLTGKKTFVGGIKEDTEEHHLRHYFEQYGEIRMI 133
Query: 131 QQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ + K+GF F++ DD + D+++ + + G +V+R
Sbjct: 134 EIMTDQGSDKKRGFAFVTCDDHDSIDKIVIQKQHTVNGHNYEVRR 178
Score = 141 (54.7 bits), Expect = 9.3e-08, P = 9.3e-08
Identities = 28/86 (32%), Positives = 44/86 (51%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K FVGG+ +T E + YF QYGE+ I I D + + RGFAFVT
Sbjct: 97 PGAHLTGKKTFVGGIKEDTEEHHLRHYFEQYGEIRMIEIMTDQGSDKKRGFAFVTCDDHD 156
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
++D ++ H + + +R +
Sbjct: 157 SIDKIVIQKQHTVNGHNYEVRRALSK 182
>UNIPROTKB|F8VYN5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000380 EMBL:AC078778 HGNC:HGNC:5031
ChiTaRS:HNRNPA1 IPI:IPI00644968 ProteinModelPortal:F8VYN5
SMR:F8VYN5 PRIDE:F8VYN5 Ensembl:ENST00000550994 ArrayExpress:F8VYN5
Bgee:F8VYN5 Uniprot:F8VYN5
Length = 113
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 43/110 (39%), Positives = 61/110 (55%)
Query: 51 DPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVTKRVNPLKC-------KI 103
DP T +SRGF FVTY T + VD + A H + + ++PKR R + + KI
Sbjct: 3 DPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKI 62
Query: 104 FVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQN 153
FVGG+ + E +RDYF QYG I + D+ K+GF F++FDD +
Sbjct: 63 FVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 112
Score = 142 (55.0 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 27/56 (48%), Positives = 38/56 (67%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTY 65
PG + +K+FVGG+ +T E + DYF QYG++E I I D +G+ RGFAFVT+
Sbjct: 53 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 108
>UNIPROTKB|F1M3H8 [details] [associations]
symbol:F1M3H8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 IPI:IPI00777708
ProteinModelPortal:F1M3H8 PRIDE:F1M3H8 Ensembl:ENSRNOT00000061231
Uniprot:F1M3H8
Length = 194
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 47/164 (28%), Positives = 82/164 (50%)
Query: 19 LFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG 78
+ +G + T E + +F +G + + +P T +SR F FVTY+ + D +AA
Sbjct: 9 VLIGEXNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAAS 68
Query: 79 DHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITEFQ 131
H + ++ KR R + + K+FVGGL ++ E D+ ++FSQ+G++ + +
Sbjct: 69 PHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAE 128
Query: 132 QPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
DK K+GF F+ F + AD+ I G V+VK+
Sbjct: 129 IIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKK 172
Score = 139 (54.0 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 8 TAGPGRNDE-RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYT 66
+A PG + + +KLFVGGL + E ++ ++FSQ+G VE I D +G+ RGF FV +
Sbjct: 88 SARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQ 147
Query: 67 TQKAVDDLLAAGDHYIGNKKIDPKRVTKR 95
+ A D H I +++ K+ +
Sbjct: 148 SHDAADKAAVVKFHPIQGHRVEVKKAVPK 176
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 160 (61.4 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 27/75 (36%), Positives = 48/75 (64%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGGL NT E+E YF ++G + + +D T + RGF FVTY ++ +V+ ++
Sbjct: 120 KKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQ 179
Query: 77 AGDHYIGNKKIDPKR 91
+ H + +K+++ KR
Sbjct: 180 SNFHELSDKRVEVKR 194
Score = 136 (52.9 bits), Expect = 9.3e-17, Sum P(2) = 9.3e-17
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 15 DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDL 74
D KLFVGG+ + T E+ + YFS+YG V + + TG+ RGF FV + D +
Sbjct: 4 DRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFAND--CDVV 61
Query: 75 LAAGD-HYIGNKKIDPKRVTKR 95
A D H+I K +D ++ ++
Sbjct: 62 KALRDTHFILGKPVDVRKAIRK 83
Score = 136 (52.9 bits), Expect = 9.3e-17, Sum P(2) = 9.3e-17
Identities = 29/93 (31%), Positives = 52/93 (55%)
Query: 83 GNKKIDPKRVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKK 142
G +++ VT R KIFVGGL++ TE++ + YF ++G T+ D N +
Sbjct: 106 GLREMSSNGVTSRTK----KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPR 161
Query: 143 GFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
GF F+++D ++ + V+++ + K V+VKR
Sbjct: 162 GFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKR 194
Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISF-DDQNVADQVLK 160
K+FVGG+ E +E+ ++ YFS+YG++ E +K +GF F+ F +D +V + L+
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVV-KALR 65
Query: 161 NPKQVICGKEVDVKR 175
+ I GK VDV++
Sbjct: 66 DT-HFILGKPVDVRK 79
>UNIPROTKB|B1AKP7 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109811
HOGENOM:HOG000254792 HOVERGEN:HBG058671 UniGene:Hs.300624
HGNC:HGNC:11571 ChiTaRS:TARDBP IPI:IPI00639819 SMR:B1AKP7
Ensembl:ENST00000315091 Uniprot:B1AKP7
Length = 295
Score = 208 (78.3 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 52/164 (31%), Positives = 88/164 (53%)
Query: 19 LFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG 78
L V GL T E+++ +YFS +GEV + +K D TG S+GF FV +T + +++
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 79 DHYIGNKKID---PKRVTKRVNPLKC-KIFVGGLTTEITEQDVRDYFSQYGSITE--FQQ 132
H I + D P + PL+ K+FVG T ++TE ++R++FSQYG + + +
Sbjct: 166 -HMIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPK 224
Query: 133 PFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRV 176
PF + F F++F D +A Q +CG+++ +K +
Sbjct: 225 PF-------RAFAFVTFADDQIA--------QSLCGEDLIIKGI 253
>UNIPROTKB|G3N220 [details] [associations]
symbol:G3N220 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00700000104376 EMBL:DAAA02027300
Ensembl:ENSBTAT00000063435 OMA:GWEDRSH Uniprot:G3N220
Length = 310
Score = 199 (75.1 bits), Expect = 2.8e-16, Sum P(2) = 2.8e-16
Identities = 45/132 (34%), Positives = 69/132 (52%)
Query: 51 DPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVTKRVNPLKC-------KI 103
DP T +SRGF FVTY+ + VD + A H + ++PKR R + +K KI
Sbjct: 3 DPKTKRSRGFGFVTYSCVEEVDAAMYARPH---KRVVEPKRAVSREDSVKPGAHLTVKKI 59
Query: 104 FVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPK 163
FVGG+ + E ++RD F YG I + D+ K+G F++FDD + D+++
Sbjct: 60 FVGGIKEDTEEYNLRDCFENYGKIETIEVMEDRQSGKKRGCAFVTFDDHDTVDKIVVQKY 119
Query: 164 QVICGKEVDVKR 175
I G +VK+
Sbjct: 120 HTINGHNCEVKK 131
Score = 142 (55.0 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + D F YG++E+I + D +G+ RG AFVT+
Sbjct: 50 PGAHLTVKKIFVGGIKEDTEEYNLRDCFENYGKIETIEVMEDRQSGKKRGCAFVTFDDHD 109
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
VD ++ H I + K+ +
Sbjct: 110 TVDKIVVQKYHTINGHNCEVKKALSK 135
Score = 43 (20.2 bits), Expect = 2.8e-16, Sum P(2) = 2.8e-16
Identities = 14/46 (30%), Positives = 16/46 (34%)
Query: 298 YGYTAGSYDAYATAYPGYDYSA-MGYAYPAPATSYGGGKYREAAAY 342
YG G Y Y GY+ G Y GGG Y + Y
Sbjct: 228 YGNQGGGYGGGGGGYDGYNEGGNFGGNYG------GGGNYNDFGNY 267
>UNIPROTKB|G3V162 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CH471130 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL109811 UniGene:Hs.300624 HGNC:HGNC:11571 ChiTaRS:TARDBP
ProteinModelPortal:G3V162 SMR:G3V162 PRIDE:G3V162
Ensembl:ENST00000473869 ArrayExpress:G3V162 Bgee:G3V162
Uniprot:G3V162
Length = 298
Score = 208 (78.3 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 52/164 (31%), Positives = 88/164 (53%)
Query: 19 LFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG 78
L V GL T E+++ +YFS +GEV + +K D TG S+GF FV +T + +++
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 79 DHYIGNKKID---PKRVTKRVNPLKC-KIFVGGLTTEITEQDVRDYFSQYGSITE--FQQ 132
H I + D P + PL+ K+FVG T ++TE ++R++FSQYG + + +
Sbjct: 166 -HMIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPK 224
Query: 133 PFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRV 176
PF + F F++F D +A Q +CG+++ +K +
Sbjct: 225 PF-------RAFAFVTFADDQIA--------QSLCGEDLIIKGI 253
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 37/83 (44%), Positives = 55/83 (66%)
Query: 9 AGPGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQ 68
A DE K+F+GGL +T +K++ DYFS++GEV ++K DP TG+SRGF FV +
Sbjct: 70 ASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 129
Query: 69 KAVDDLLAAGDHYIGNKKIDPKR 91
++VD ++ +H + K IDPKR
Sbjct: 130 ESVDKVMDQKEHKLNGKVIDPKR 152
Score = 143 (55.4 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GGL+ + T++D++DYFS++G + + D +GF F+ F + D+V+
Sbjct: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
Query: 162 PKQVICGKEVDVKRVK 177
+ + GK +D KR K
Sbjct: 139 KEHKLNGKVIDPKRAK 154
>FB|FBgn0010258 [details] [associations]
symbol:Rbp4 "RNA-binding protein 4" species:7227 "Drosophila
melanogaster" [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS;NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 GO:GO:0003729
GO:GO:0003727 Gene3D:3.30.70.330 HSSP:P09651 EMBL:U18401
ProteinModelPortal:Q24024 SMR:Q24024 IntAct:Q24024 PRIDE:Q24024
FlyBase:FBgn0010258 eggNOG:NOG289504 InParanoid:Q24024
OrthoDB:EOG4CNP6S Bgee:Q24024 Uniprot:Q24024
Length = 428
Score = 153 (58.9 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 31/79 (39%), Positives = 44/79 (55%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RK+F+GGL T + + +FSQ+G V + DP + SRGF FVTY K+V+ +
Sbjct: 32 RKIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKSVEIVQR 91
Query: 77 AGDHYIGNKKIDPKRVTKR 95
A H I NK ++ K R
Sbjct: 92 ARPHTIDNKIVETKHALPR 110
Score = 134 (52.2 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 12 GRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAV 71
G + +++F+GGL E + +YFSQ+G V S+ + D TG+ R F F+ + +
Sbjct: 131 GFMNSKRIFLGGLKEYHDENIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSA 190
Query: 72 DDLLAAGDHYIGNKKIDPKRVTKRVN 97
+ LA H+I ++ KR T++ +
Sbjct: 191 EKALAPRKHWILQTLVEVKRSTQKAD 216
Score = 114 (45.2 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
+IF+GGL E VR+YFSQ+G + + D+ ++ F F+ F D + A++ L
Sbjct: 137 RIFLGGLKEYHDENIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKALAP 196
Query: 162 PKQVICGKEVDVKR 175
K I V+VKR
Sbjct: 197 RKHWILQTLVEVKR 210
Score = 113 (44.8 bits), Expect = 0.00088, P = 0.00088
Identities = 30/95 (31%), Positives = 49/95 (51%)
Query: 82 IGNKKIDPKRVTKR--VNPLKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKN 139
+G+ K D K K L+ KIF+GGL+T+ T + +R +FSQ+G + + D N
Sbjct: 12 LGDCKGDGKTAIKEEGYEHLR-KIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSN 70
Query: 140 MKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVK 174
+GF F+++ D + V + I K V+ K
Sbjct: 71 HSRGFGFVTYVDPKSVEIVQRARPHTIDNKIVETK 105
>UNIPROTKB|F1LXW0 [details] [associations]
symbol:F1LXW0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00212167 Ensembl:ENSRNOT00000008039
Uniprot:F1LXW0
Length = 293
Score = 206 (77.6 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 54/170 (31%), Positives = 86/170 (50%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
KLF G L T ++ + +F Q+ + DP T +SRGF FVTY T + VD ++ A
Sbjct: 15 KLFTGALSFETTDESLRSHFEQW--TTHCGVMRDPNTKRSRGFGFVTYATVEEVDAVMNA 72
Query: 78 GDHYIGNKKIDPKRVTKRVN---P---LKCKIFVGGLTTEITEQDVRDYFSQYGSITEFQ 131
H + + ++PKR R + P L KIFVGG+ + E +RDY Q G + Q
Sbjct: 73 RPHKVDGRVVEPKRAVSREDSQRPGAHLAVKIFVGGIKEDTEEHHLRDYSEQNG---KKQ 129
Query: 132 QPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRVKFNPE 181
+ + K K+GF ++FD + D+++ K G +V++ + E
Sbjct: 130 RQWKK----KRGFALVTFDAHDSVDKIVIQ-KYHTNGHSCEVRKALWKQE 174
>UNIPROTKB|F1M7F0 [details] [associations]
symbol:F1M7F0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00563307
ProteinModelPortal:F1M7F0 Ensembl:ENSRNOT00000041604 Uniprot:F1M7F0
Length = 224
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 49/161 (30%), Positives = 75/161 (46%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
KL +GGL T + + ++F ++G + DP T +SR FVTY T + VD + A
Sbjct: 24 KLCIGGLIFKTTHESLRNHFEKWGTFTDCVVMRDPNTKRSRSSGFVTYNTVEEVDAAMNA 83
Query: 78 GDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITEF 130
+ + + PKR R + + KIF GG+ + E +VRDYF YG I
Sbjct: 84 RPQKMDGRLVKPKRAVSREDSQRPGTQLTVKKIFEGGIKEDTEEHNVRDYFEHYGKIDMI 143
Query: 131 QQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEV 171
+ D+S KK F + DD + D++ + G V
Sbjct: 144 EIMTDRSSG-KKEFALVPLDDHDSVDKIAIQKYHTVNGTTV 183
>UNIPROTKB|F1SA31 [details] [associations]
symbol:F1SA31 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:CU856608
Ensembl:ENSSSCT00000014866 Uniprot:F1SA31
Length = 332
Score = 209 (78.6 bits), Expect = 5.3e-16, P = 5.3e-16
Identities = 53/167 (31%), Positives = 88/167 (52%)
Query: 16 ERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLL 75
+ KLF+GGL T K +N Y+ Q+G+++ + I+ DP + +SR F + + VD
Sbjct: 15 KEKLFIGGLSSQTTGKGLN-YYKQWGKLDCVVIR-DPTSQKSR-FILLHFHPWLRVDAAR 71
Query: 76 AAGDHYIGNKKIDPKRVTKRVN-----PLKC--KIFVGGLTTEITEQDVRDYFSQYGSIT 128
AA I K + PK R + PL K+F+GGLT + E +RDYF +Y I
Sbjct: 72 AATPRSIDGKMVAPKHAVPREDYGKPGPLVTVKKLFIGGLTEDTEEHHLRDYFEKYEKID 131
Query: 129 EFQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKR 175
+ D+ + +GF F++FDD + D++L+ + G +V++
Sbjct: 132 AIEIITDRQSSKIRGFGFVTFDDHDHVDKLLQK-NHTVNGHHAEVRK 177
>UNIPROTKB|F1PQB0 [details] [associations]
symbol:HNRNPA1L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:AAEX03003034 Ensembl:ENSCAFT00000027199 Uniprot:F1PQB0
Length = 314
Score = 207 (77.9 bits), Expect = 8.5e-16, P = 8.5e-16
Identities = 48/150 (32%), Positives = 79/150 (52%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+KLF+ GL ++ + +F Q+G + + DP T SRGF + VD +
Sbjct: 14 QKLFIRGLSFEITDESLRTHFEQWGTLTDYVVMRDPNTKCSRGFG-----AMEEVDAAMN 68
Query: 77 AGDHYIGNKKIDPKR-VTKRVNP-----LKCK-IFVGGLTTEITEQDVRDYFSQYGSITE 129
+ +G + ++PKR V++ +P L K IFVGG+ + E +RDYF QYG I
Sbjct: 69 SRPCKVGRRVLEPKRAVSQEDSPRPGVLLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 128
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVL 159
+ D+ K+GF F++FDD + D+++
Sbjct: 129 IESMTDRGSGKKRGFAFVTFDDHDSVDKIV 158
Score = 150 (57.9 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 30/80 (37%), Positives = 48/80 (60%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGG+ +T E + DYF QYG++E I D +G+ RGFAFVT+ +VD ++
Sbjct: 100 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIESMTDRGSGKKRGFAFVTFDDHDSVDKIVI 159
Query: 77 AGDHYI-GNKKIDPKRVTKR 95
H G+ ++ K + K+
Sbjct: 160 QKYHAANGHNRVVRKTLWKQ 179
>UNIPROTKB|Q13148 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008219 "cell
death" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IDA] [GO:0043922
"negative regulation by host of viral transcription" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0008219 EMBL:CH471130 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003700 GO:GO:0006366 GO:GO:0003730 GO:GO:0003690
Orphanet:803 eggNOG:COG0724 GO:GO:0043922 Orphanet:275872
GO:GO:0070935 EMBL:AL109811 CTD:23435 HOVERGEN:HBG058671
OrthoDB:EOG447FTT EMBL:U23731 EMBL:EF434181 EMBL:EF434182
EMBL:EF434183 EMBL:AK312416 EMBL:CR533534 EMBL:AK222754
EMBL:AL050265 EMBL:BC071657 EMBL:BC095435 IPI:IPI00025815
IPI:IPI00844544 IPI:IPI00971018 PIR:I38977 RefSeq:NP_031401.1
UniGene:Hs.300624 PDB:1WF0 PDB:2CQG PDBsum:1WF0 PDBsum:2CQG
ProteinModelPortal:Q13148 SMR:Q13148 DIP:DIP-31167N IntAct:Q13148
STRING:Q13148 PhosphoSite:Q13148 DMDM:20140568 PaxDb:Q13148
PRIDE:Q13148 DNASU:23435 Ensembl:ENST00000240185 GeneID:23435
KEGG:hsa:23435 UCSC:uc001art.3 GeneCards:GC01P011006
HGNC:HGNC:11571 HPA:CAB003703 HPA:HPA017284 MIM:605078 MIM:612069
neXtProt:NX_Q13148 PharmGKB:PA36336 InParanoid:Q13148 OMA:QFFSQYG
PhylomeDB:Q13148 ChiTaRS:TARDBP EvolutionaryTrace:Q13148
GenomeRNAi:23435 NextBio:45695 ArrayExpress:Q13148 Bgee:Q13148
CleanEx:HS_TARDBP Genevestigator:Q13148 GermOnline:ENSG00000120948
Uniprot:Q13148
Length = 414
Score = 208 (78.3 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 52/164 (31%), Positives = 88/164 (53%)
Query: 19 LFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG 78
L V GL T E+++ +YFS +GEV + +K D TG S+GF FV +T + +++
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 79 DHYIGNKKID---PKRVTKRVNPLKC-KIFVGGLTTEITEQDVRDYFSQYGSITE--FQQ 132
H I + D P + PL+ K+FVG T ++TE ++R++FSQYG + + +
Sbjct: 166 -HMIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPK 224
Query: 133 PFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRV 176
PF + F F++F D +A Q +CG+++ +K +
Sbjct: 225 PF-------RAFAFVTFADDQIA--------QSLCGEDLIIKGI 253
>UNIPROTKB|G3MYU0 [details] [associations]
symbol:G3MYU0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02005585
Ensembl:ENSBTAT00000064368 Uniprot:G3MYU0
Length = 256
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 48/165 (29%), Positives = 84/165 (50%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+ GL T ++ ++ +F + G+ + + P T SRGF FVT +++ +
Sbjct: 26 RKLFIRGLSFETIDESLSSHF-EMGKAHRLVVMRVPNTKHSRGFGFVTKPWWRSLA-AMN 83
Query: 77 AGDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITE 129
A H + + ++PKR R + + KIFVGG+ E +R+ F QYG I +
Sbjct: 84 ARPHKVDERVVEPKRDVSRGDSQRPHAHLTVKKIFVGGIQEGTEEHHLRNNFEQYGKI-D 142
Query: 130 FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVK 174
+ D+ + K+GF F +FDD + D+++ + G +V+
Sbjct: 143 IEIMTDRGSDKKRGFAFETFDDHDSVDKIVIQKYHTVNGHNCEVR 187
Score = 117 (46.2 bits), Expect = 0.00011, P = 0.00011
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGG+ T E + + F QYG+++ I I D + + RGFAF T+ +VD ++
Sbjct: 115 KKIFVGGIQEGTEEHHLRNNFEQYGKID-IEIMTDRGSDKKRGFAFETFDDHDSVDKIVI 173
Query: 77 AGDHYIGNKKIDPKRVTKR 95
H + + + +
Sbjct: 174 QKYHTVNGHNCEVREALSK 192
>UNIPROTKB|F8VTQ5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022641
ProteinModelPortal:F8VTQ5 SMR:F8VTQ5 PRIDE:F8VTQ5
Ensembl:ENST00000551702 ArrayExpress:F8VTQ5 Bgee:F8VTQ5
Uniprot:F8VTQ5
Length = 145
Score = 157 (60.3 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T E + DYF QYG++E I I D +G+ RGFAFVT+
Sbjct: 49 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 108
Query: 70 AVDDLLAAGDHYIGNKKIDPKRVTKR 95
+VD ++ H + + ++ +
Sbjct: 109 SVDKIVIQKYHTVNGHNCEVRKALSK 134
Score = 146 (56.5 bits), Expect = 8.0e-15, Sum P(2) = 8.0e-15
Identities = 26/74 (35%), Positives = 42/74 (56%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
KIFVGG+ + E +RDYF QYG I + D+ K+GF F++FDD + D+++
Sbjct: 57 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 116
Query: 162 PKQVICGKEVDVKR 175
+ G +V++
Sbjct: 117 KYHTVNGHNCEVRK 130
Score = 64 (27.6 bits), Expect = 8.0e-15, Sum P(2) = 8.0e-15
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYG 41
RKLF+GGL T ++ + +F Q+G
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWG 38
>UNIPROTKB|Q2KJ45 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG145464
HOGENOM:HOG000254792 HOVERGEN:HBG058671 OrthoDB:EOG447FTT
GeneTree:ENSGT00570000079202 EMBL:DAAA02042967 EMBL:DAAA02042968
UniGene:Bt.106561 EMBL:BC105527 IPI:IPI00695185 SMR:Q2KJ45
STRING:Q2KJ45 Ensembl:ENSBTAT00000033464 InParanoid:Q2KJ45
Uniprot:Q2KJ45
Length = 298
Score = 199 (75.1 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 52/164 (31%), Positives = 86/164 (52%)
Query: 19 LFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG 78
L V GL T E+++ DYFS +GEV + +K D TG S+GF FV +T + +++
Sbjct: 106 LIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 79 DHYIGNKKIDPKRVTKRVNP---LKC-KIFVGGLTTEITEQDVRDYFSQYGSITE--FQQ 132
H I + D K + +P L+ K+FVG T ++T ++R +F QYG + + +
Sbjct: 166 -HMIDGRWCDCKLPNSKQSPDEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPK 224
Query: 133 PFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRV 176
PF + F F++F D VA Q +CG+++ +K +
Sbjct: 225 PF-------RAFAFVTFADDQVA--------QSLCGEDLIIKGI 253
>RGD|1310906 [details] [associations]
symbol:Tardbp "TAR DNA binding protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA;ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=IEA;ISO] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0034976 "response to endoplasmic reticulum stress"
evidence=IEP] [GO:0035061 "interchromatin granule" evidence=IDA]
[GO:0043922 "negative regulation by host of viral transcription"
evidence=IEA;ISO] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310906 GO:GO:0005737 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0034976 EMBL:CH473968
GO:GO:0005726 GO:GO:0035061 CTD:23435 GeneTree:ENSGT00570000079202
EMBL:BC083752 RefSeq:NP_001011979.1 UniGene:Rn.2633
Ensembl:ENSRNOT00000049822 GeneID:298648 KEGG:rno:298648
Uniprot:I6L9G6
Length = 285
Score = 197 (74.4 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 51/164 (31%), Positives = 87/164 (53%)
Query: 19 LFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG 78
L V GL T E+++ DYFS +GEV + +K D TG S+GF FV +T + +++
Sbjct: 106 LIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 79 DHYIGNKKIDPKRVTKRVNP---LKC-KIFVGGLTTEITEQDVRDYFSQYGSITE--FQQ 132
H I + D K + +P L+ K+FVG T ++T ++++ +F QYG + + +
Sbjct: 166 -HMIDGRWCDCKLPNSKQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK 224
Query: 133 PFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRV 176
PF + F F++F D VA Q +CG+++ +K +
Sbjct: 225 PF-------RAFAFVTFADDKVA--------QSLCGEDLIIKGI 253
>UNIPROTKB|D4A9S4 [details] [associations]
symbol:Tardbp "Protein Tardbp" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310906 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00197538 ProteinModelPortal:D4A9S4
Ensembl:ENSRNOT00000017922 ArrayExpress:D4A9S4 Uniprot:D4A9S4
Length = 288
Score = 197 (74.4 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 51/164 (31%), Positives = 87/164 (53%)
Query: 19 LFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG 78
L V GL T E+++ DYFS +GEV + +K D TG S+GF FV +T + +++
Sbjct: 106 LIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 79 DHYIGNKKIDPKRVTKRVNP---LKC-KIFVGGLTTEITEQDVRDYFSQYGSITE--FQQ 132
H I + D K + +P L+ K+FVG T ++T ++++ +F QYG + + +
Sbjct: 166 -HMIDGRWCDCKLPNSKQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK 224
Query: 133 PFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRV 176
PF + F F++F D VA Q +CG+++ +K +
Sbjct: 225 PF-------RAFAFVTFADDKVA--------QSLCGEDLIIKGI 253
>FB|FBgn0025790 [details] [associations]
symbol:TBPH "TAR DNA-binding protein-43 homolog" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0048812 "neuron projection
morphogenesis" evidence=IMP] [GO:0008344 "adult locomotory
behavior" evidence=IMP] [GO:0007528 "neuromuscular junction
development" evidence=IMP] [GO:0007417 "central nervous system
development" evidence=IMP] [GO:0045886 "negative regulation of
synaptic growth at neuromuscular junction" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0007528 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0008344 GO:GO:0045886 EMBL:AB010261
HSSP:Q61474 eggNOG:NOG145464 EMBL:AB019705 EMBL:AB019706 SMR:O97468
IntAct:O97468 STRING:O97468 UCSC:CG10327-RC FlyBase:FBgn0025790
InParanoid:O97468 OrthoDB:EOG4QNKC2 Uniprot:O97468
Length = 531
Score = 204 (76.9 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 60/176 (34%), Positives = 88/176 (50%)
Query: 6 NGTAGPGRNDER----KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFA 61
N TA R + R L V GL T E+ + +YF YGEV IK D +GQS+GF
Sbjct: 92 NSTAKTKRIETRLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFG 151
Query: 62 FVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVTKRV--NPLKCKIFVGGLTTEITEQDVRD 119
FV + + A +L H I + + K + + + CK+FVG T +I D+R+
Sbjct: 152 FVRFGSYDAQMRVLT-NRHLIDGRWCEVKVPNSKGMGHQVPCKVFVGRCTEDINSDDLRE 210
Query: 120 YFSQYGSITE--FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDV 173
YFS++G +T+ +PF + F F++F D +VA Q L +I G V V
Sbjct: 211 YFSKFGEVTDVFIPRPF-------RAFSFVTFLDPDVA-QSLCGEDHIIKGVSVHV 258
>UNIPROTKB|Q2L7G6 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003676 GO:GO:0030529 EMBL:AL109936 UniGene:Hs.373763
HGNC:HGNC:5047 ChiTaRS:HNRNPR EMBL:DQ351905 IPI:IPI00856038
SMR:Q2L7G6 STRING:Q2L7G6 Ensembl:ENST00000427764 UCSC:uc010odw.2
Uniprot:Q2L7G6
Length = 595
Score = 190 (71.9 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 54/177 (30%), Positives = 93/177 (52%)
Query: 8 TAGPGRNDERKL--FVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTY 65
T GP DE K+ FVG + R+ E E+ F + G + + + DP +GQ+RG+AF+T+
Sbjct: 119 TKGP---DEAKIKVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITF 175
Query: 66 TTQKAVDDLLAAGDHYIGNKKIDP-KRVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQY 124
++A + + D Y +I P K + ++ ++FVG + T++++ + FS+
Sbjct: 176 CGKEAAQEAVKLCDSY----EIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV 231
Query: 125 --G--SITEFQQPFDKSKNMKKGFCFISFDDQNVADQV---LKNPKQVICGKEVDVK 174
G + + QP DK KN +GFCF+ ++D A Q L + K + G V V+
Sbjct: 232 TEGLVDVILYHQPDDKKKN--RGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVE 286
Score = 113 (44.8 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 45/173 (26%), Positives = 82/173 (47%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGE--VESISIKNDPYTGQSRGFAFVTYTTQKAVDDL- 74
+LFVG + +N ++ I + FS+ E V+ I ++RGF F+ Y K+
Sbjct: 209 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 268
Query: 75 --LAAGDHYI-GN----KKIDPKRVTKRVNPLKCKI-FVGGLTTEITEQDVRDYFSQYGS 126
L +G + GN + DP K K+ FV L T +TE+ + FS++G
Sbjct: 269 RRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGK 328
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK--NPKQVICGKEVDVKRVK 177
+ ++ K +K + F+ F+D+ A + + N K++ G+E+++ K
Sbjct: 329 L-------ERVKKLKD-YAFVHFEDRGAAVKAMDEMNGKEIE-GEEIEIVLAK 372
Score = 54 (24.1 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 14/39 (35%), Positives = 15/39 (38%)
Query: 298 YGYTAG--SYDAYATAYPGYDYSAMGYAYPAPATSYGGG 334
YGY Y+ Y Y GYDY Y P Y G
Sbjct: 420 YGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDG 458
>UNIPROTKB|E2RF37 [details] [associations]
symbol:E2RF37 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03000660
Ensembl:ENSCAFT00000003502 OMA:MAMCSAN Uniprot:E2RF37
Length = 330
Score = 183 (69.5 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 40/150 (26%), Positives = 71/150 (47%)
Query: 39 QYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAGDHYIGNKKIDPKRVTKRVNP 98
++G + + DP T SRGF F+TY T + VD + H + + ++ K+ R +
Sbjct: 2 KWGMLTDCVVMRDPNTKCSRGFEFLTYATVEDVDAAMNVRPHKVDERVVELKKAVSREDS 61
Query: 99 LKC-------KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDD 151
+ KIFVGG+ + + +RDYF YG I + D+ K+ F F++FD
Sbjct: 62 QRPGAHLTVKKIFVGGIKEDTEQHHLRDYFEHYGKIEVIEIMTDRGSGNKRSFAFVTFDA 121
Query: 152 QNVADQVLKNPKQVICGKEVDVKRVKFNPE 181
+ D+++ + G +V++ E
Sbjct: 122 HDSVDKIVIQKYHTVNGHNCEVRKALLKQE 151
Score = 142 (55.0 bits), Expect = 7.6e-09, Sum P(2) = 7.6e-09
Identities = 27/82 (32%), Positives = 45/82 (54%)
Query: 11 PGRN-DERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQK 69
PG + +K+FVGG+ +T + + DYF YG++E I I D +G R FAFVT+
Sbjct: 64 PGAHLTVKKIFVGGIKEDTEQHHLRDYFEHYGKIEVIEIMTDRGSGNKRSFAFVTFDAHD 123
Query: 70 AVDDLLAAGDHYIGNKKIDPKR 91
+VD ++ H + + ++
Sbjct: 124 SVDKIVIQKYHTVNGHNCEVRK 145
Score = 51 (23.0 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 16/46 (34%), Positives = 19/46 (41%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSY----GGGKYREAA 340
GY+ GS Y + GY GY SY GGG Y A+
Sbjct: 213 GYSGGSR-GYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGGYGGAS 257
Score = 43 (20.2 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 13/40 (32%), Positives = 16/40 (40%)
Query: 303 GSYDAYATAYPGYDYSAMGYA-----YPAPATSYGG-GKY 336
G+ Y PGY + GY Y + YGG G Y
Sbjct: 202 GNDGGYRGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSY 241
>WB|WBGene00019249 [details] [associations]
symbol:H28G03.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002308 EMBL:FO081568 RefSeq:NP_741783.1
UniGene:Cel.17692 ProteinModelPortal:H2L0D0 SMR:H2L0D0 PRIDE:H2L0D0
EnsemblMetazoa:H28G03.1a.1 EnsemblMetazoa:H28G03.1a.2 GeneID:180791
KEGG:cel:CELE_H28G03.1 CTD:180791 WormBase:H28G03.1a OMA:HIVNERK
Uniprot:H2L0D0
Length = 336
Score = 198 (74.8 bits), Expect = 3.4e-14, P = 3.4e-14
Identities = 48/175 (27%), Positives = 90/175 (51%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
RKLF+GGL +T ++++ +YFSQ+G V + DP T SRGF FVT+ + + + +
Sbjct: 70 RKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMN 129
Query: 77 AGDHYIGNKKIDPKRVTKR-------------VNPLK-CKIFVGGLTTEITEQD-VRDYF 121
H +G K +D KR R +P CK+ + G+T + D +R YF
Sbjct: 130 DRPHKLGGKTVDSKRAIPREQMSSMIPPPFFETDPAPGCKLLLNGITNGVHSVDSLRVYF 189
Query: 122 SQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVL--KNPKQVICGKEVDVK 174
+G++ + + +G F+ ++D+ AD+ L + + ++ ++++V+
Sbjct: 190 ETFGTLDQVE-----ILGQPRGLGFVIYEDKESADRCLAHNSGRHIVNERKIEVR 239
Score = 113 (44.8 bits), Expect = 0.00059, P = 0.00059
Identities = 23/74 (31%), Positives = 42/74 (56%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+F+GGL+ + T++ + +YFSQ+G + + D + +GF F++F A+ + +
Sbjct: 71 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMND 130
Query: 162 PKQVICGKEVDVKR 175
+ GK VD KR
Sbjct: 131 RPHKLGGKTVDSKR 144
>RGD|1309982 [details] [associations]
symbol:Hnrnpc "heterogeneous nuclear ribonucleoprotein C
(C1/C2)" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=ISO] [GO:0045120 "pronucleus" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309982 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:X16933 IPI:IPI00213609
PIR:S09017 UniGene:Rn.101929 ProteinModelPortal:P17132 SMR:P17132
STRING:P17132 PRIDE:P17132 UCSC:RGD:1309982 ArrayExpress:P17132
Genevestigator:P17132 GermOnline:ENSRNOG00000002292 Uniprot:P17132
Length = 158
Score = 182 (69.1 bits), Expect = 5.0e-14, P = 5.0e-14
Identities = 33/94 (35%), Positives = 57/94 (60%)
Query: 69 KAVDDLLAAGDHYIGNKKIDPKRVT--KRVNPLKCKIFVGGLTTEITEQDVRDYFSQYGS 126
++VD ++ +H + K IDPKR K P+K KIFVGGL+ + E+ +R+YF +G
Sbjct: 1 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK-KIFVGGLSPDTPEEKIREYFGGFGE 59
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK 160
+ + P D N ++GFCFI+F ++ ++++
Sbjct: 60 VESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 93
Score = 150 (57.9 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 17 RKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLA 76
+K+FVGGL +T E++I +YF +GEVESI + D T + RGF F+T+ ++ V ++
Sbjct: 34 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 93
Query: 77 AGDHYIGNKKIDPK 90
H +G K + K
Sbjct: 94 KKYHNVGLSKCEIK 107
>UNIPROTKB|G3MX91 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043922 "negative regulation by host of viral
transcription" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0003690 "double-stranded DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690
GO:GO:0043922 GO:GO:0070935 CTD:23435 OMA:QFFSQYG
GeneTree:ENSGT00570000079202 EMBL:DAAA02042967 EMBL:DAAA02042968
RefSeq:NP_001039950.2 UniGene:Bt.106561 Ensembl:ENSBTAT00000065252
GeneID:540632 KEGG:bta:540632 NextBio:20878740 Uniprot:G3MX91
Length = 414
Score = 199 (75.1 bits), Expect = 5.5e-14, P = 5.5e-14
Identities = 52/164 (31%), Positives = 86/164 (52%)
Query: 19 LFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG 78
L V GL T E+++ DYFS +GEV + +K D TG S+GF FV +T + +++
Sbjct: 106 LIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 79 DHYIGNKKIDPKRVTKRVNP---LKC-KIFVGGLTTEITEQDVRDYFSQYGSITE--FQQ 132
H I + D K + +P L+ K+FVG T ++T ++R +F QYG + + +
Sbjct: 166 -HMIDGRWCDCKLPNSKQSPDEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPK 224
Query: 133 PFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRV 176
PF + F F++F D VA Q +CG+++ +K +
Sbjct: 225 PF-------RAFAFVTFADDQVA--------QSLCGEDLIIKGI 253
>UNIPROTKB|I3L7S7 [details] [associations]
symbol:LOC100621383 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00570000079202 Ensembl:ENSSSCT00000025708
Uniprot:I3L7S7
Length = 275
Score = 191 (72.3 bits), Expect = 6.5e-14, P = 6.5e-14
Identities = 50/164 (30%), Positives = 86/164 (52%)
Query: 19 LFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG 78
L V GL T E+++ +YFS +GEV + +K D TG S+GF FV +T + +++
Sbjct: 39 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQR 98
Query: 79 DHYIGNKKIDPKRVTKRVNP---LKC-KIFVGGLTTEITEQDVRDYFSQYGSITE--FQQ 132
H I + D K + +P L+ K+FVG T ++T +++ +F QYG + + +
Sbjct: 99 -HMIDGRWCDCKLPNSKQSPDEPLRSRKVFVGRCTEDMTADELQQFFCQYGEVVDVFIPK 157
Query: 133 PFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRV 176
PF + F F++F D VA Q +CG+++ +K +
Sbjct: 158 PF-------RAFAFVTFADDQVA--------QSLCGEDLIIKGI 186
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 141 (54.7 bits), Expect = 7.8e-14, Sum P(2) = 7.8e-14
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 14 NDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDD 73
++E KLFVGGL+ NT E+ + D+FS +G + + + D T +SRGF F+T+T + +
Sbjct: 3 SEEGKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASN 62
Query: 74 LLAA--GDHYIGNK-KID 88
+ A G+ G + ++D
Sbjct: 63 AMRAMNGESLDGRQIRVD 80
Score = 101 (40.6 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 23/76 (30%), Positives = 41/76 (53%)
Query: 102 KIFVGGLTTEITEQDVRDYFSQYGSITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLKN 161
K+FVGGL E+ + D+FS +G I+E D+ +GF FI+F + A N
Sbjct: 7 KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS----N 62
Query: 162 PKQVICGKEVDVKRVK 177
+ + G+ +D ++++
Sbjct: 63 AMRAMNGESLDGRQIR 78
Score = 60 (26.2 bits), Expect = 7.8e-14, Sum P(2) = 7.8e-14
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 299 GYTAGSYDAYATAYPGYDYSAMGYAYPAPATSYGGGKYREAAAYPRHA 346
GY +G YD AY G+ Y GY Y + YGG R Y R++
Sbjct: 111 GYGSGRYDNRPGAY-GFGY---GYGY-GRSRDYGG---RSQGGYDRYS 150
>MGI|MGI:2387629 [details] [associations]
symbol:Tardbp "TAR DNA binding protein" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0043922 "negative regulation by host of
viral transcription" evidence=ISO] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:2387629 GO:GO:0005634 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003730 GO:GO:0003690 GO:GO:0043922 GO:GO:0070935
UniGene:Mm.378962 CTD:23435 eggNOG:NOG145464 HOGENOM:HOG000254792
HOVERGEN:HBG058671 OrthoDB:EOG447FTT OMA:QFFSQYG EMBL:AK133207
EMBL:AK153803 EMBL:BC012873 EMBL:BC025544 EMBL:BC027772
EMBL:BC031126 EMBL:BC033475 IPI:IPI00121758 RefSeq:NP_663531.1
UniGene:Mm.22453 PDB:3D2W PDBsum:3D2W ProteinModelPortal:Q921F2
SMR:Q921F2 STRING:Q921F2 PhosphoSite:Q921F2
REPRODUCTION-2DPAGE:Q921F2 PaxDb:Q921F2 PRIDE:Q921F2
Ensembl:ENSMUST00000084125 GeneID:230908 KEGG:mmu:230908
GeneTree:ENSGT00570000079202 InParanoid:Q3V0E7
EvolutionaryTrace:Q921F2 NextBio:380280 Bgee:Q921F2
CleanEx:MM_TARDBP Genevestigator:Q921F2
GermOnline:ENSMUSG00000041459 Uniprot:Q921F2
Length = 414
Score = 197 (74.4 bits), Expect = 9.9e-14, P = 9.9e-14
Identities = 51/164 (31%), Positives = 87/164 (53%)
Query: 19 LFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG 78
L V GL T E+++ DYFS +GEV + +K D TG S+GF FV +T + +++
Sbjct: 106 LIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 79 DHYIGNKKIDPKRVTKRVNP---LKC-KIFVGGLTTEITEQDVRDYFSQYGSITE--FQQ 132
H I + D K + +P L+ K+FVG T ++T ++++ +F QYG + + +
Sbjct: 166 -HMIDGRWCDCKLPNSKQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK 224
Query: 133 PFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRV 176
PF + F F++F D VA Q +CG+++ +K +
Sbjct: 225 PF-------RAFAFVTFADDKVA--------QSLCGEDLIIKGI 253
>RGD|631348 [details] [associations]
symbol:Hnrnpr "heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:631348 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0030529 HSSP:O08583
IPI:IPI00194562 UniGene:Rn.195396 EMBL:AY184814
ProteinModelPortal:Q811S1 SMR:Q811S1 STRING:Q811S1 PRIDE:Q811S1
UCSC:RGD:631348 InParanoid:Q811S1 Genevestigator:Q811S1
Uniprot:Q811S1
Length = 632
Score = 185 (70.2 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 51/172 (29%), Positives = 90/172 (52%)
Query: 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKA 70
PG E +FVG + R+ E E+ F + G + + + DP +GQ+RG+AF+T+ ++A
Sbjct: 161 PGIGTE--VFVGKIPRDLYEDELVPLFEEAGPIWDLRLMMDPLSGQNRGYAFITFCGKEA 218
Query: 71 VDDLLAAGDHYIGNKKIDP-KRVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQY--G-- 125
+ + D Y +I P K + ++ ++FVG + T++++ + FS+ G
Sbjct: 219 AQEAVKLCDSY----EIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLV 274
Query: 126 SITEFQQPFDKSKNMKKGFCFISFDDQNVADQV---LKNPKQVICGKEVDVK 174
+ + QP DK KN +GFCF+ ++D A Q L + K + G V V+
Sbjct: 275 DVILYHQPDDKKKN--RGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVE 324
Score = 113 (44.8 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 45/173 (26%), Positives = 82/173 (47%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGE--VESISIKNDPYTGQSRGFAFVTYTTQKAVDDL- 74
+LFVG + +N ++ I + FS+ E V+ I ++RGF F+ Y K+
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 306
Query: 75 --LAAGDHYI-GN----KKIDPKRVTKRVNPLKCKI-FVGGLTTEITEQDVRDYFSQYGS 126
L +G + GN + DP K K+ FV L T +TE+ + FS++G
Sbjct: 307 RRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGK 366
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK--NPKQVICGKEVDVKRVK 177
+ ++ K +K + F+ F+D+ A + + N K++ G+E+++ K
Sbjct: 367 L-------ERVKKLKD-YAFVHFEDRGAAVKAMDEMNGKEIE-GEEIEIVLAK 410
Score = 54 (24.1 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 14/39 (35%), Positives = 15/39 (38%)
Query: 298 YGYTAG--SYDAYATAYPGYDYSAMGYAYPAPATSYGGG 334
YGY Y+ Y Y GYDY Y P Y G
Sbjct: 457 YGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDG 495
>UNIPROTKB|E2QS43 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043922 "negative regulation by host of viral
transcription" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0003690 "double-stranded DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690
GO:GO:0043922 GO:GO:0070935 CTD:23435 OMA:QFFSQYG
GeneTree:ENSGT00570000079202 EMBL:AAEX03001938 RefSeq:XP_535409.3
Ensembl:ENSCAFT00000026536 GeneID:478234 KEGG:cfa:478234
NextBio:20853591 Uniprot:E2QS43
Length = 414
Score = 195 (73.7 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 51/164 (31%), Positives = 86/164 (52%)
Query: 19 LFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG 78
L V GL T E+++ +YFS +GEV + +K D TG S+GF FV +T + +++
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 79 DHYIGNKKIDPKRVTKRVNP---LKC-KIFVGGLTTEITEQDVRDYFSQYGSITE--FQQ 132
H I + D K + +P L+ K+FVG T ++T ++R +F QYG + + +
Sbjct: 166 -HMIDGRWCDCKLPNSKQSPDEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPK 224
Query: 133 PFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRV 176
PF + F F++F D VA Q +CG+++ +K +
Sbjct: 225 PF-------RAFAFVTFADDQVA--------QSLCGEDLIIKGI 253
>UNIPROTKB|Q566E4 [details] [associations]
symbol:Hnrnpr "Heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:631348 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0071013 OrthoDB:EOG4FN4HM
HOGENOM:HOG000186082 CTD:10236 KO:K13161 EMBL:BC093598
IPI:IPI00194562 RefSeq:NP_783193.2 UniGene:Rn.195396 SMR:Q566E4
STRING:Q566E4 Ensembl:ENSRNOT00000016001 GeneID:319110
KEGG:rno:319110 InParanoid:Q566E4 NextBio:672099
Genevestigator:Q566E4 Uniprot:Q566E4
Length = 632
Score = 184 (69.8 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 51/172 (29%), Positives = 90/172 (52%)
Query: 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKA 70
PG E +FVG + R+ E E+ F + G + + + DP +GQ+RG+AF+T+ ++A
Sbjct: 161 PGIGTE--VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEA 218
Query: 71 VDDLLAAGDHYIGNKKIDP-KRVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQY--G-- 125
+ + D Y +I P K + ++ ++FVG + T++++ + FS+ G
Sbjct: 219 AQEAVKLCDSY----EIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLV 274
Query: 126 SITEFQQPFDKSKNMKKGFCFISFDDQNVADQV---LKNPKQVICGKEVDVK 174
+ + QP DK KN +GFCF+ ++D A Q L + K + G V V+
Sbjct: 275 DVILYHQPDDKKKN--RGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVE 324
Score = 113 (44.8 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 45/173 (26%), Positives = 82/173 (47%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGE--VESISIKNDPYTGQSRGFAFVTYTTQKAVDDL- 74
+LFVG + +N ++ I + FS+ E V+ I ++RGF F+ Y K+
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 306
Query: 75 --LAAGDHYI-GN----KKIDPKRVTKRVNPLKCKI-FVGGLTTEITEQDVRDYFSQYGS 126
L +G + GN + DP K K+ FV L T +TE+ + FS++G
Sbjct: 307 RRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGK 366
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK--NPKQVICGKEVDVKRVK 177
+ ++ K +K + F+ F+D+ A + + N K++ G+E+++ K
Sbjct: 367 L-------ERVKKLKD-YAFVHFEDRGAAVKAMDEMNGKEIE-GEEIEIVLAK 410
Score = 54 (24.1 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 14/39 (35%), Positives = 15/39 (38%)
Query: 298 YGYTAG--SYDAYATAYPGYDYSAMGYAYPAPATSYGGG 334
YGY Y+ Y Y GYDY Y P Y G
Sbjct: 457 YGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDG 495
>UNIPROTKB|A3KMV6 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0003676 GO:GO:0071013
OrthoDB:EOG4FN4HM HOGENOM:HOG000186082 CTD:10236 KO:K13161
OMA:YYPPPRM EMBL:DAAA02006438 EMBL:BC133299 IPI:IPI00704335
RefSeq:NP_001076077.1 UniGene:Bt.3687 SMR:A3KMV6 STRING:A3KMV6
Ensembl:ENSBTAT00000022054 GeneID:512479 KEGG:bta:512479
InParanoid:A3KMV6 NextBio:20870409 Uniprot:A3KMV6
Length = 633
Score = 184 (69.8 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 51/172 (29%), Positives = 90/172 (52%)
Query: 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKA 70
PG E +FVG + R+ E E+ F + G + + + DP +GQ+RG+AF+T+ ++A
Sbjct: 161 PGIGTE--VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEA 218
Query: 71 VDDLLAAGDHYIGNKKIDP-KRVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQY--G-- 125
+ + D Y +I P K + ++ ++FVG + T++++ + FS+ G
Sbjct: 219 AQEAVKLCDSY----EIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLV 274
Query: 126 SITEFQQPFDKSKNMKKGFCFISFDDQNVADQV---LKNPKQVICGKEVDVK 174
+ + QP DK KN +GFCF+ ++D A Q L + K + G V V+
Sbjct: 275 DVILYHQPDDKKKN--RGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVE 324
Score = 113 (44.8 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 45/173 (26%), Positives = 82/173 (47%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGE--VESISIKNDPYTGQSRGFAFVTYTTQKAVDDL- 74
+LFVG + +N ++ I + FS+ E V+ I ++RGF F+ Y K+
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 306
Query: 75 --LAAGDHYI-GN----KKIDPKRVTKRVNPLKCKI-FVGGLTTEITEQDVRDYFSQYGS 126
L +G + GN + DP K K+ FV L T +TE+ + FS++G
Sbjct: 307 RRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGK 366
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK--NPKQVICGKEVDVKRVK 177
+ ++ K +K + F+ F+D+ A + + N K++ G+E+++ K
Sbjct: 367 L-------ERVKKLKD-YAFVHFEDRGAAVKAMDEMNGKEIE-GEEIEIVLAK 410
Score = 54 (24.1 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 14/39 (35%), Positives = 15/39 (38%)
Query: 298 YGYTAG--SYDAYATAYPGYDYSAMGYAYPAPATSYGGG 334
YGY Y+ Y Y GYDY Y P Y G
Sbjct: 458 YGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDG 496
>UNIPROTKB|E2RE36 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 CTD:10236 KO:K13161 OMA:YYPPPRM EMBL:AAEX03001757
RefSeq:XP_852945.1 ProteinModelPortal:E2RE36
Ensembl:ENSCAFT00000021145 GeneID:478192 KEGG:cfa:478192
Uniprot:E2RE36
Length = 633
Score = 184 (69.8 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 51/172 (29%), Positives = 90/172 (52%)
Query: 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKA 70
PG E +FVG + R+ E E+ F + G + + + DP +GQ+RG+AF+T+ ++A
Sbjct: 161 PGIGTE--VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEA 218
Query: 71 VDDLLAAGDHYIGNKKIDP-KRVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQY--G-- 125
+ + D Y +I P K + ++ ++FVG + T++++ + FS+ G
Sbjct: 219 AQEAVKLCDSY----EIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLV 274
Query: 126 SITEFQQPFDKSKNMKKGFCFISFDDQNVADQV---LKNPKQVICGKEVDVK 174
+ + QP DK KN +GFCF+ ++D A Q L + K + G V V+
Sbjct: 275 DVILYHQPDDKKKN--RGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVE 324
Score = 113 (44.8 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 45/173 (26%), Positives = 82/173 (47%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGE--VESISIKNDPYTGQSRGFAFVTYTTQKAVDDL- 74
+LFVG + +N ++ I + FS+ E V+ I ++RGF F+ Y K+
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 306
Query: 75 --LAAGDHYI-GN----KKIDPKRVTKRVNPLKCKI-FVGGLTTEITEQDVRDYFSQYGS 126
L +G + GN + DP K K+ FV L T +TE+ + FS++G
Sbjct: 307 RRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGK 366
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK--NPKQVICGKEVDVKRVK 177
+ ++ K +K + F+ F+D+ A + + N K++ G+E+++ K
Sbjct: 367 L-------ERVKKLKD-YAFVHFEDRGAAVKAMDEMNGKEIE-GEEIEIVLAK 410
Score = 54 (24.1 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 14/39 (35%), Positives = 15/39 (38%)
Query: 298 YGYTAG--SYDAYATAYPGYDYSAMGYAYPAPATSYGGG 334
YGY Y+ Y Y GYDY Y P Y G
Sbjct: 458 YGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDG 496
>UNIPROTKB|O43390 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0006397 "mRNA processing" evidence=NAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Reactome:REACT_1675
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0000398 GO:GO:0071013 HOGENOM:HOG000186082
EMBL:AF000364 EMBL:AL109936 EMBL:BC001449 IPI:IPI00012074
IPI:IPI00941649 PIR:T02673 RefSeq:NP_001095867.1
RefSeq:NP_001095868.1 RefSeq:NP_005817.1 UniGene:Hs.373763 PDB:2DK2
PDBsum:2DK2 ProteinModelPortal:O43390 SMR:O43390 IntAct:O43390
MINT:MINT-2796101 STRING:O43390 PhosphoSite:O43390 PaxDb:O43390
PeptideAtlas:O43390 PRIDE:O43390 DNASU:10236
Ensembl:ENST00000302271 Ensembl:ENST00000374612
Ensembl:ENST00000374616 GeneID:10236 KEGG:hsa:10236 UCSC:uc001bgp.4
UCSC:uc001bgr.4 CTD:10236 GeneCards:GC01M023630 HGNC:HGNC:5047
HPA:CAB011687 HPA:HPA026092 MIM:607201 neXtProt:NX_O43390
PharmGKB:PA162391459 KO:K13161 OMA:YYPPPRM PhylomeDB:O43390
ChiTaRS:HNRNPR EvolutionaryTrace:O43390 GenomeRNAi:10236
NextBio:38770 PMAP-CutDB:O43390 ArrayExpress:O43390 Bgee:O43390
CleanEx:HS_HNRNPR Genevestigator:O43390 GermOnline:ENSG00000125944
Uniprot:O43390
Length = 633
Score = 184 (69.8 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 51/172 (29%), Positives = 90/172 (52%)
Query: 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKA 70
PG E +FVG + R+ E E+ F + G + + + DP +GQ+RG+AF+T+ ++A
Sbjct: 161 PGIGTE--VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEA 218
Query: 71 VDDLLAAGDHYIGNKKIDP-KRVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQY--G-- 125
+ + D Y +I P K + ++ ++FVG + T++++ + FS+ G
Sbjct: 219 AQEAVKLCDSY----EIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLV 274
Query: 126 SITEFQQPFDKSKNMKKGFCFISFDDQNVADQV---LKNPKQVICGKEVDVK 174
+ + QP DK KN +GFCF+ ++D A Q L + K + G V V+
Sbjct: 275 DVILYHQPDDKKKN--RGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVE 324
Score = 113 (44.8 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 45/173 (26%), Positives = 82/173 (47%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGE--VESISIKNDPYTGQSRGFAFVTYTTQKAVDDL- 74
+LFVG + +N ++ I + FS+ E V+ I ++RGF F+ Y K+
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 306
Query: 75 --LAAGDHYI-GN----KKIDPKRVTKRVNPLKCKI-FVGGLTTEITEQDVRDYFSQYGS 126
L +G + GN + DP K K+ FV L T +TE+ + FS++G
Sbjct: 307 RRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGK 366
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK--NPKQVICGKEVDVKRVK 177
+ ++ K +K + F+ F+D+ A + + N K++ G+E+++ K
Sbjct: 367 L-------ERVKKLKD-YAFVHFEDRGAAVKAMDEMNGKEIE-GEEIEIVLAK 410
Score = 54 (24.1 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 14/39 (35%), Positives = 15/39 (38%)
Query: 298 YGYTAG--SYDAYATAYPGYDYSAMGYAYPAPATSYGGG 334
YGY Y+ Y Y GYDY Y P Y G
Sbjct: 458 YGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDG 496
>ZFIN|ZDB-GENE-030131-3777 [details] [associations]
symbol:tardbp "TAR DNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007626 "locomotory behavior" evidence=IMP] [GO:0048675 "axon
extension" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-3777 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007626 GO:GO:0003676 GO:GO:0048675 HSSP:Q14103 CTD:23435
eggNOG:NOG145464 HOGENOM:HOG000254792 HOVERGEN:HBG058671
OrthoDB:EOG447FTT GeneTree:ENSGT00570000079202 EMBL:BX663614
EMBL:BC049348 IPI:IPI00495103 RefSeq:NP_958884.1 UniGene:Dr.2409
SMR:Q802C7 STRING:Q802C7 Ensembl:ENSDART00000058555 GeneID:325052
KEGG:dre:325052 InParanoid:Q802C7 NextBio:20809098 Uniprot:Q802C7
Length = 412
Score = 194 (73.4 bits), Expect = 2.6e-13, P = 2.6e-13
Identities = 52/172 (30%), Positives = 86/172 (50%)
Query: 13 RNDERK--LFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKA 70
R D++ L V GL T E+++ DYF +GEV + +K D TG S+GF FV + +
Sbjct: 104 RGDQKTSDLIVLGLPWKTSEQDLKDYFGTFGEVIMVQVKRDVKTGNSKGFGFVRFGDWET 163
Query: 71 VDDLLAAGDHYIGNKKIDPKRVTKRVN---PLKC-KIFVGGLTTEITEQDVRDYFSQYGS 126
++ H I + D K + P++ K+FVG T ++T ++R +F QYG
Sbjct: 164 QSKVMTQR-HMIDGRWCDCKLPNSKQGIDEPMRSRKVFVGRCTEDMTADELRQFFMQYGE 222
Query: 127 ITE--FQQPFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRV 176
+T+ +PF + F F++F D VA +CG+++ +K V
Sbjct: 223 VTDVFIPKPF-------RAFAFVTFADDQVA--------AALCGEDLIIKGV 259
>UNIPROTKB|F1M0Q5 [details] [associations]
symbol:F1M0Q5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00559641
ProteinModelPortal:F1M0Q5 Ensembl:ENSRNOT00000036216 Uniprot:F1M0Q5
Length = 165
Score = 176 (67.0 bits), Expect = 2.6e-13, P = 2.6e-13
Identities = 42/132 (31%), Positives = 64/132 (48%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAA 77
KL +GGL T + + ++F ++G + DP T +SR FVTY T + VD + A
Sbjct: 34 KLCIGGLIFKTTHESLRNHFEKWGTFTDCVVMRDPNTKRSRSSGFVTYNTVEEVDAAMNA 93
Query: 78 GDHYIGNKKIDPKRVTKRVNPLKC-------KIFVGGLTTEITEQDVRDYFSQYGSITEF 130
+ + + PKR R + + KIF GG+ + E +VRDYF YG I
Sbjct: 94 RPQKMDGRLVKPKRAVSREDSQRPGTQLTVKKIFEGGIKEDTEEHNVRDYFEHYGKIDMI 153
Query: 131 QQPFDKSKNMKK 142
+ D+S K+
Sbjct: 154 EIMTDRSSGKKE 165
>UNIPROTKB|E1BZR1 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 OMA:YYPPPRM EMBL:AADN02051307 EMBL:AADN02051308
IPI:IPI00597410 ProteinModelPortal:E1BZR1
Ensembl:ENSGALT00000001185 ArrayExpress:E1BZR1 Uniprot:E1BZR1
Length = 661
Score = 184 (69.8 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 50/172 (29%), Positives = 91/172 (52%)
Query: 11 PGRNDERKLFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKA 70
PG E +FVG + R+ E E+ F + G + + + DP +GQ+RG+AF+T+ ++ A
Sbjct: 189 PGIGTE--VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCSKDA 246
Query: 71 VDDLLAAGDHYIGNKKIDP-KRVTKRVNPLKCKIFVGGLTTEITEQDVRDYFSQY--G-- 125
+ + D+Y +I P K + ++ ++FVG + T++++ + F++ G
Sbjct: 247 AQEAVKLCDNY----EIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFNKVTEGLV 302
Query: 126 SITEFQQPFDKSKNMKKGFCFISFDDQNVADQV---LKNPKQVICGKEVDVK 174
+ + QP DK KN +GFCF+ ++D A Q L + K + G V V+
Sbjct: 303 DVILYHQPDDKKKN--RGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVE 352
Score = 111 (44.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 44/173 (25%), Positives = 82/173 (47%)
Query: 18 KLFVGGLHRNTGEKEINDYFSQYGE--VESISIKNDPYTGQSRGFAFVTYTTQKAVDDL- 74
+LFVG + +N ++ I + F++ E V+ I ++RGF F+ Y K+
Sbjct: 275 RLFVGSIPKNKTKENILEEFNKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 334
Query: 75 --LAAGDHYI-GN----KKIDPKRVTKRVNPLKCKI-FVGGLTTEITEQDVRDYFSQYGS 126
L +G + GN + DP K K+ FV L T +TE+ + FS++G
Sbjct: 335 RRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGK 394
Query: 127 ITEFQQPFDKSKNMKKGFCFISFDDQNVADQVLK--NPKQVICGKEVDVKRVK 177
+ ++ K +K + F+ F+D+ A + + N K++ G+E+++ K
Sbjct: 395 L-------ERVKKLKD-YAFVHFEDRGAAVKAMNEMNGKEIE-GEEIEIVLAK 438
Score = 54 (24.1 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 14/39 (35%), Positives = 15/39 (38%)
Query: 298 YGYTAG--SYDAYATAYPGYDYSAMGYAYPAPATSYGGG 334
YGY Y+ Y Y GYDY Y P Y G
Sbjct: 485 YGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDG 523
>UNIPROTKB|F1NBY1 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0043922
"negative regulation by host of viral transcription" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690 GO:GO:0070935
IPI:IPI00596633 OMA:QFFSQYG GeneTree:ENSGT00570000079202
EMBL:AADN02040753 PRIDE:F1NBY1 Ensembl:ENSGALT00000004585
Uniprot:F1NBY1
Length = 414
Score = 193 (73.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 50/164 (30%), Positives = 87/164 (53%)
Query: 19 LFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG 78
L V GL T E+++ +YFS +GEV + +K D TG S+GF FV +T + +++
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKVMSQR 165
Query: 79 DHYIGNKKIDPKRVTKRVNP---LKC-KIFVGGLTTEITEQDVRDYFSQYGSITE--FQQ 132
H I + D K + +P L+ K+FVG T ++T +++ +F+QYG + + +
Sbjct: 166 -HMIDGRWCDCKLPNSKQSPDEPLRSRKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPK 224
Query: 133 PFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRV 176
PF + F F++F D VA Q +CG+++ +K +
Sbjct: 225 PF-------RAFAFVTFADDQVA--------QSLCGEDLIIKGI 253
>UNIPROTKB|Q5ZLN5 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
EMBL:AJ719699 IPI:IPI00596633 RefSeq:NP_001026049.1
UniGene:Gga.16753 HSSP:Q13148 ProteinModelPortal:Q5ZLN5 SMR:Q5ZLN5
STRING:Q5ZLN5 PRIDE:Q5ZLN5 GeneID:419453 KEGG:gga:419453 CTD:23435
eggNOG:NOG145464 HOGENOM:HOG000254792 HOVERGEN:HBG058671
InParanoid:Q5ZLN5 OrthoDB:EOG447FTT NextBio:20822507 Uniprot:Q5ZLN5
Length = 414
Score = 193 (73.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 50/164 (30%), Positives = 87/164 (53%)
Query: 19 LFVGGLHRNTGEKEINDYFSQYGEVESISIKNDPYTGQSRGFAFVTYTTQKAVDDLLAAG 78
L V GL T E+++ +YFS +GEV + +K D TG S+GF FV +T + +++
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKVMSQR 165
Query: 79 DHYIGNKKIDPKRVTKRVNP---LKC-KIFVGGLTTEITEQDVRDYFSQYGSITE--FQQ 132
H I + D K + +P L+ K+FVG T ++T +++ +F+QYG + + +
Sbjct: 166 -HMIDGRWCDCKLPNSKQSPDEPLRSRKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPK 224
Query: 133 PFDKSKNMKKGFCFISFDDQNVADQVLKNPKQVICGKEVDVKRV 176
PF + F F++F D VA Q +CG+++ +K +
Sbjct: 225 PF-------RAFAFVTFADDQVA--------QSLCGEDLIIKGI 253
WARNING: HSPs involving 814 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 348 291 0.00089 115 3 11 22 0.40 34
33 0.43 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1064
No. of states in DFA: 605 (64 KB)
Total size of DFA: 211 KB (2116 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.91u 0.11s 23.02t Elapsed: 00:00:03
Total cpu time: 22.97u 0.11s 23.08t Elapsed: 00:00:03
Start: Thu Aug 15 11:28:48 2013 End: Thu Aug 15 11:28:51 2013
WARNINGS ISSUED: 2