Query psy17571
Match_columns 151
No_of_seqs 175 out of 1405
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 16:58:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17571.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17571hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4171|consensus 99.9 1.6E-22 3.5E-27 180.0 8.6 82 1-86 537-621 (671)
2 KOG3619|consensus 99.8 3.4E-20 7.3E-25 169.8 8.7 79 1-83 761-841 (867)
3 PF00211 Guanylate_cyc: Adenyl 99.8 2.5E-19 5.4E-24 136.2 9.1 80 1-84 102-184 (184)
4 KOG3618|consensus 99.7 3.5E-18 7.7E-23 153.8 6.2 84 1-88 1190-1274(1318)
5 KOG3619|consensus 99.7 7.7E-18 1.7E-22 154.4 7.5 86 1-86 206-291 (867)
6 KOG1023|consensus 99.7 5.1E-17 1.1E-21 142.0 6.3 83 1-88 393-478 (484)
7 cd07302 CHD cyclase homology d 99.6 9.3E-16 2E-20 113.7 9.0 78 1-82 97-177 (177)
8 COG2114 CyaA Adenylate cyclase 99.6 5E-16 1.1E-20 123.6 7.4 78 1-86 137-217 (227)
9 KOG3618|consensus 99.6 6.2E-15 1.3E-19 133.2 7.3 86 1-86 434-528 (1318)
10 smart00044 CYCc Adenylyl- / gu 99.5 5.5E-14 1.2E-18 108.0 6.2 56 1-56 132-187 (194)
11 cd07556 Nucleotidyl_cyc_III Cl 70.1 3.6 7.7E-05 28.1 2.0 26 20-45 108-133 (133)
12 COG5616 Predicted integral mem 44.5 11 0.00025 28.6 1.0 24 99-122 20-43 (152)
13 PRK12370 invasion protein regu 43.1 14 0.00031 32.9 1.6 14 136-149 119-132 (553)
14 PRK11906 transcriptional regul 32.5 20 0.00044 31.9 0.9 14 136-149 115-128 (458)
15 PF07335 Glyco_hydro_75: Funga 28.9 26 0.00057 26.6 0.8 25 3-28 61-85 (156)
16 PF10655 DUF2482: Hypothetical 28.7 30 0.00065 24.3 1.0 31 2-39 44-74 (100)
17 PF09652 Cas_VVA1548: Putative 25.6 64 0.0014 22.6 2.2 23 6-40 33-55 (93)
No 1
>KOG4171|consensus
Probab=99.87 E-value=1.6e-22 Score=179.96 Aligned_cols=82 Identities=32% Similarity=0.624 Sum_probs=75.9
Q ss_pred CEEEEEeccEEEeEeCCccccceeeCchHHHHHHhhhcCCCCeEEEcHHHHHhhhc--ceeEEeCCCCCCceeecCce-E
Q psy17571 1 MRIGIHSGSVLCGVLGLRKWQFDVWSYDVTLANHLEAGGIPGRVHISRATLDCLQE--MYEVEPGYGDTRDSYLKEHQ-V 77 (151)
Q Consensus 1 ~RIGIhtG~Vi~GviG~~~~~ydv~Gd~Vn~AsRLes~a~pg~I~vS~~t~~~l~~--~~~~~~~~~~~~~~~~kg~~-v 77 (151)
||||||+|+|+|||+|.+.|+||+||||||+|+|||+.+.|++|+||+.||+.|.. .|+|+++ +.+.+||++ +
T Consensus 537 iRiGIHsG~VvAGVVG~kmPRYCLFGdTVn~AsrmES~s~p~KI~vS~~T~~~l~~~~~f~f~pR----g~v~vk~kg~m 612 (671)
T KOG4171|consen 537 IRIGIHSGPVVAGVVGVKMPRYCLFGDTVNLASRMESSSVPGKINVSPTTYRKLKKQGSFEFEPR----GRVEVKGKGPM 612 (671)
T ss_pred EEEEeccCCeeeeeecccccceeecCCchhhhhhhhcCCCCceEEeCHHHHHHHHhCCCceeeec----CccccCCCCce
Confidence 69999999999999999999999999999999999999999999999999999984 5888888 668888886 9
Q ss_pred EEEEEEecC
Q psy17571 78 ETFLIKSQE 86 (151)
Q Consensus 78 ~ty~l~~~~ 86 (151)
.||+|....
T Consensus 613 ~tyFL~~~~ 621 (671)
T KOG4171|consen 613 ETYFLERSL 621 (671)
T ss_pred EEEEEEecC
Confidence 999998654
No 2
>KOG3619|consensus
Probab=99.81 E-value=3.4e-20 Score=169.82 Aligned_cols=79 Identities=35% Similarity=0.688 Sum_probs=76.4
Q ss_pred CEEEEEeccEEEeEeCCccccceeeCchHHHHHHhhhcCCCCeEEEcHHHHHhhhc-ceeEEeCCCCCCceeecCce-EE
Q psy17571 1 MRIGIHSGSVLCGVLGLRKWQFDVWSYDVTLANHLEAGGIPGRVHISRATLDCLQE-MYEVEPGYGDTRDSYLKEHQ-VE 78 (151)
Q Consensus 1 ~RIGIhtG~Vi~GviG~~~~~ydv~Gd~Vn~AsRLes~a~pg~I~vS~~t~~~l~~-~~~~~~~~~~~~~~~~kg~~-v~ 78 (151)
+||||+.|+|++||+|.++|+||+||+|||+|+||++++.+|+|+|+|+|+..|+. .|.|+++ +.+++||++ +.
T Consensus 761 LrIGin~GpvvAGVIGArKPqYDIWGNTVNvASRMdSTGv~g~IQVTEEt~~iL~~~gy~~~~R----G~i~VKGkGel~ 836 (867)
T KOG3619|consen 761 LRIGINHGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGVPGRIQVTEETANILQGLGYRFECR----GVINVKGKGELE 836 (867)
T ss_pred eeeceeccceeeeEecCCCCCccccccchhhhhcccccCCCCeEEecHHHHHHHhcCCeeEEec----ceEEEeccccee
Confidence 59999999999999999999999999999999999999999999999999999995 7999999 899999998 99
Q ss_pred EEEEE
Q psy17571 79 TFLIK 83 (151)
Q Consensus 79 ty~l~ 83 (151)
||++.
T Consensus 837 Tyfl~ 841 (867)
T KOG3619|consen 837 TYFLC 841 (867)
T ss_pred EEEec
Confidence 99998
No 3
>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4.6.1.2 from EC) catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties [, , , ]. Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0009190 cyclic nucleotide biosynthetic process, 0035556 intracellular signal transduction; PDB: 3UVJ_A 1FX4_A 1WC4_B 2BW7_D 1WC1_A 1WC0_A 1WC3_A 1WC5_A 1WC6_A 3ET6_B ....
Probab=99.80 E-value=2.5e-19 Score=136.15 Aligned_cols=80 Identities=34% Similarity=0.589 Sum_probs=74.5
Q ss_pred CEEEEEeccEEEeEeCCccccceeeCchHHHHHHhhhcCCCCeEEEcHHHHHhhh--cceeEEeCCCCCCceeecCce-E
Q psy17571 1 MRIGIHSGSVLCGVLGLRKWQFDVWSYDVTLANHLEAGGIPGRVHISRATLDCLQ--EMYEVEPGYGDTRDSYLKEHQ-V 77 (151)
Q Consensus 1 ~RIGIhtG~Vi~GviG~~~~~ydv~Gd~Vn~AsRLes~a~pg~I~vS~~t~~~l~--~~~~~~~~~~~~~~~~~kg~~-v 77 (151)
+|||||+|+|++|.+|..+++|++||++||+|+||++.+.+++|+||+++|+.|. ..|.++.. +.+.+||+. +
T Consensus 102 ~rIGI~~G~v~~g~~G~~~~~~~v~G~~vn~Aarl~~~a~~~~i~vs~~v~~~l~~~~~~~~~~~----g~~~lkG~~~~ 177 (184)
T PF00211_consen 102 VRIGIHTGPVVVGVVGSRRPEYDVFGDAVNIAARLESLAPPGQILVSEEVYDALNESDQFRFEEL----GRVELKGKGPV 177 (184)
T ss_dssp EEEEEEEEEEEEEEEESSSEEEEEESHHHHHHHHHHHTSSTTSEEEEHHHHHHHTTHTTEEEEEE----EEEEETTSSEE
T ss_pred eeccccccccccccccCcccceeeeehhhhhhHHHHHhhcccccccCHHHHHHhcccCceEEEEe----eeEEEecCCCc
Confidence 5999999999999999778999999999999999999999999999999999999 78999988 889999965 9
Q ss_pred EEEEEEe
Q psy17571 78 ETFLIKS 84 (151)
Q Consensus 78 ~ty~l~~ 84 (151)
.+|+|.+
T Consensus 178 ~~y~~~~ 184 (184)
T PF00211_consen 178 QTYQLNG 184 (184)
T ss_dssp EEEEEE-
T ss_pred EEEEEEC
Confidence 9999863
No 4
>KOG3618|consensus
Probab=99.73 E-value=3.5e-18 Score=153.85 Aligned_cols=84 Identities=26% Similarity=0.567 Sum_probs=79.1
Q ss_pred CEEEEEeccEEEeEeCCccccceeeCchHHHHHHhhhcCCCCeEEEcHHHHHhhhcceeEEeCCCCCCceeecCce-EEE
Q psy17571 1 MRIGIHSGSVLCGVLGLRKWQFDVWSYDVTLANHLEAGGIPGRVHISRATLDCLQEMYEVEPGYGDTRDSYLKEHQ-VET 79 (151)
Q Consensus 1 ~RIGIhtG~Vi~GviG~~~~~ydv~Gd~Vn~AsRLes~a~pg~I~vS~~t~~~l~~~~~~~~~~~~~~~~~~kg~~-v~t 79 (151)
+|||.|.|+|.+||||..++-||+|||+||+|+||.+++.+++|+||+.+++.|.+.|+|+++ +.+.+||+. |+|
T Consensus 1190 lrvG~NiGpvTAGVIGTtKLyYDIWGDtVNiASRMdsTGv~nRIQVs~~~~~~L~~rYeFe~R----g~v~VKGkd~M~t 1265 (1318)
T KOG3618|consen 1190 LRVGFNIGPVTAGVIGTTKLYYDIWGDTVNIASRMDSTGVENRIQVSEESYRVLSKRYEFEYR----GTVNVKGKDQMKT 1265 (1318)
T ss_pred EEeeccccCccccccccceeeehhhcchhhhhhhccccCCcceeEecHHHHHHHHhhcccccc----ceEEEeccCccee
Confidence 499999999999999999999999999999999999999999999999999999999999999 889999997 999
Q ss_pred EEEEecCCC
Q psy17571 80 FLIKSQEPT 88 (151)
Q Consensus 80 y~l~~~~~~ 88 (151)
|......+.
T Consensus 1266 yLy~~r~d~ 1274 (1318)
T KOG3618|consen 1266 YLYPKRTDH 1274 (1318)
T ss_pred EEeccccCC
Confidence 999765544
No 5
>KOG3619|consensus
Probab=99.72 E-value=7.7e-18 Score=154.44 Aligned_cols=86 Identities=77% Similarity=1.329 Sum_probs=81.9
Q ss_pred CEEEEEeccEEEeEeCCccccceeeCchHHHHHHhhhcCCCCeEEEcHHHHHhhhcceeEEeCCCCCCceeecCceEEEE
Q psy17571 1 MRIGIHSGSVLCGVLGLRKWQFDVWSYDVTLANHLEAGGIPGRVHISRATLDCLQEMYEVEPGYGDTRDSYLKEHQVETF 80 (151)
Q Consensus 1 ~RIGIhtG~Vi~GviG~~~~~ydv~Gd~Vn~AsRLes~a~pg~I~vS~~t~~~l~~~~~~~~~~~~~~~~~~kg~~v~ty 80 (151)
||||||+|.|+||++|.++++||||++.|.+|++||+.|.||+||||++|.+.|.++|++++..++.....++..+++||
T Consensus 206 mrvGihsG~Vl~GvlG~~kwq~DVws~dv~lAn~mEs~G~pgrVhis~~Tl~~L~g~yeve~g~g~~r~~~l~~~~~~ty 285 (867)
T KOG3619|consen 206 MRVGIHSGSVLCGVLGLRKWQYDVWSNDVTLANHMEAGGVPGRVHISKATLDCLNGEYEVEPGHGGERDPYLKEHGIETY 285 (867)
T ss_pred eEEEEecCceeecccccceeeeeeccchhhhhhhhhhcCCCceeEechhHHHHhCCCceeecCCCcccchHHHhcCCceE
Confidence 79999999999999999999999999999999999999999999999999999999999999988777888888899999
Q ss_pred EEEecC
Q psy17571 81 LIKSQE 86 (151)
Q Consensus 81 ~l~~~~ 86 (151)
.+....
T Consensus 286 ~i~~~~ 291 (867)
T KOG3619|consen 286 LIIPPS 291 (867)
T ss_pred Eecccc
Confidence 998754
No 6
>KOG1023|consensus
Probab=99.68 E-value=5.1e-17 Score=142.04 Aligned_cols=83 Identities=29% Similarity=0.477 Sum_probs=73.9
Q ss_pred CEEEEEeccEEEeEeCCccccceeeCchHHHHHHhhhcCCCCeEEEcHHHHHhhhc--ceeEEeCCCCCCceeecCce-E
Q psy17571 1 MRIGIHSGSVLCGVLGLRKWQFDVWSYDVTLANHLEAGGIPGRVHISRATLDCLQE--MYEVEPGYGDTRDSYLKEHQ-V 77 (151)
Q Consensus 1 ~RIGIhtG~Vi~GviG~~~~~ydv~Gd~Vn~AsRLes~a~pg~I~vS~~t~~~l~~--~~~~~~~~~~~~~~~~kg~~-v 77 (151)
+|||+|+|+|++||+|...++|++||||||+|+|||+.+. +.|++|+.+++.|.. .|..+.+ +.+.+||++ +
T Consensus 393 iRig~~sg~~~agVvgl~mPRYclFgDtvn~AsrMes~G~-~~i~~s~~~~~~l~~~~~~~~e~r----G~v~~kgkg~~ 467 (484)
T KOG1023|consen 393 LRIGFHSGPVVAGVVGLKMPRYCLFGDTVNTASRMESNGK-LMIHLSEEAKNLLTERPQFETEER----GLVELKGKGVM 467 (484)
T ss_pred eeeccccCCceecccccCCCcccchhhHHHHHhhhhhcCC-eEEEecHHHHHHHHhcCceeeecc----CcEEeecCcee
Confidence 6999999999999999999999999999999999999999 999999999999972 3444444 789999998 9
Q ss_pred EEEEEEecCCC
Q psy17571 78 ETFLIKSQEPT 88 (151)
Q Consensus 78 ~ty~l~~~~~~ 88 (151)
.|||+.+....
T Consensus 468 ~t~wl~g~~~~ 478 (484)
T KOG1023|consen 468 STYWLLGESSK 478 (484)
T ss_pred eeEEeccCccc
Confidence 99999876543
No 7
>cd07302 CHD cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.
Probab=99.64 E-value=9.3e-16 Score=113.71 Aligned_cols=78 Identities=35% Similarity=0.551 Sum_probs=71.3
Q ss_pred CEEEEEeccEEEeEeCCccccceeeCchHHHHHHhhhcCCCCeEEEcHHHHHhhhc-ceeEEeCCCCCCceeecCc--eE
Q psy17571 1 MRIGIHSGSVLCGVLGLRKWQFDVWSYDVTLANHLEAGGIPGRVHISRATLDCLQE-MYEVEPGYGDTRDSYLKEH--QV 77 (151)
Q Consensus 1 ~RIGIhtG~Vi~GviG~~~~~ydv~Gd~Vn~AsRLes~a~pg~I~vS~~t~~~l~~-~~~~~~~~~~~~~~~~kg~--~v 77 (151)
+|||||+|++++|.+|..+..|++||++||+|+||++.+.+|+|++|+++++.+.. .|.+.+. +.+.+|+. ++
T Consensus 97 ~riGi~~G~~~~g~~g~~~~~~~~~G~~v~~A~rl~~~a~~~~i~vs~~~~~~l~~~~~~~~~~----~~~~l~~~~~~~ 172 (177)
T cd07302 97 LRIGIHTGPVVAGVVGSERPEYTVIGDTVNLAARLESLAKPGQILVSEATYELLGDAGFEFEEL----GEVELKGKSGPV 172 (177)
T ss_pred EEEEEecceEEEEecCCCCcceeEecchHhHHHHHHhcCCCCEEEECHHHHHhhccCceEEEEe----CCEEecCCCCce
Confidence 59999999999999999888999999999999999999999999999999999998 8888887 56778875 68
Q ss_pred EEEEE
Q psy17571 78 ETFLI 82 (151)
Q Consensus 78 ~ty~l 82 (151)
.+|.+
T Consensus 173 ~~y~~ 177 (177)
T cd07302 173 RVYRL 177 (177)
T ss_pred EEEEC
Confidence 88864
No 8
>COG2114 CyaA Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]
Probab=99.64 E-value=5e-16 Score=123.62 Aligned_cols=78 Identities=31% Similarity=0.408 Sum_probs=66.7
Q ss_pred CEEEEEeccEEEeEeCCccccceeeCchHHHHHHhhhcCCCCeEEEcHHHHHhhhc-ceeEEeCCCCCCceeecCc--eE
Q psy17571 1 MRIGIHSGSVLCGVLGLRKWQFDVWSYDVTLANHLEAGGIPGRVHISRATLDCLQE-MYEVEPGYGDTRDSYLKEH--QV 77 (151)
Q Consensus 1 ~RIGIhtG~Vi~GviG~~~~~ydv~Gd~Vn~AsRLes~a~pg~I~vS~~t~~~l~~-~~~~~~~~~~~~~~~~kg~--~v 77 (151)
+|||||+|+|++|.+|. ||+||++||+|+|||+++++|.|++|++|++++.+ .+.+... +...+||. ++
T Consensus 137 ~riGi~~G~vv~~~~g~----~~~~G~~VN~AaRLe~~a~~g~i~iS~~~~~~~~~~~~~~~~~----g~~~lkg~~~~~ 208 (227)
T COG2114 137 VRIGIHTGEVVVGNTGG----YTVVGSAVNQAARLESLAKPGQVLLSEATYDLVRDLVDLFSGL----GSHRLKGLARPV 208 (227)
T ss_pred EEEEEEeecEEEEeecC----eeEechHhHHHHHHHHhcCCCeEEEcHHHHHHHhhhhhhhhcC----CceecCCCCCce
Confidence 58999999999999988 99999999999999999999999999999999995 4444433 56677764 59
Q ss_pred EEEEEEecC
Q psy17571 78 ETFLIKSQE 86 (151)
Q Consensus 78 ~ty~l~~~~ 86 (151)
++|.+....
T Consensus 209 ~v~~~~~~~ 217 (227)
T COG2114 209 RVYQLCHRS 217 (227)
T ss_pred EEEEecccc
Confidence 999996543
No 9
>KOG3618|consensus
Probab=99.56 E-value=6.2e-15 Score=133.20 Aligned_cols=86 Identities=47% Similarity=0.867 Sum_probs=73.0
Q ss_pred CEEEEEeccEEEeEeCCccccceeeCchHHHHHHhhhcCCCCeEEEcHHHHHhhhcceeEEeCCC--CCCceeecC----
Q psy17571 1 MRIGIHSGSVLCGVLGLRKWQFDVWSYDVTLANHLEAGGIPGRVHISRATLDCLQEMYEVEPGYG--DTRDSYLKE---- 74 (151)
Q Consensus 1 ~RIGIhtG~Vi~GviG~~~~~ydv~Gd~Vn~AsRLes~a~pg~I~vS~~t~~~l~~~~~~~~~~~--~~~~~~~kg---- 74 (151)
||+|||||.|+||++|.+|..||||.++||+|+.||+.+.+|+|||||+|...|.+.|+++.... +++...+-|
T Consensus 434 MRVGvHTGtVlCGivGtrRfKFDVwSNDV~LAN~MEssGvag~VHiSeaTak~L~d~Ye~EeG~~~~g~~~~~V~g~~rR 513 (1318)
T KOG3618|consen 434 MRVGVHTGTVLCGIVGTRRFKFDVWSNDVNLANLMESSGVAGKVHISEATAKYLDDRYEMEEGKVIEGLGQSVVAGQLRR 513 (1318)
T ss_pred eEEEEecceEEeeeeecceEeeeeccCcchHHHHHHhcCCCcceEeeHHHHHHhcccceeccCccccccceeEEeceeee
Confidence 79999999999999999999999999999999999999999999999999999999999987622 222222222
Q ss_pred ---ceEEEEEEEecC
Q psy17571 75 ---HQVETFLIKSQE 86 (151)
Q Consensus 75 ---~~v~ty~l~~~~ 86 (151)
..+.||++.+..
T Consensus 514 tnP~t~kt~li~G~~ 528 (1318)
T KOG3618|consen 514 TNPGTLKTYLISGQR 528 (1318)
T ss_pred cCCcccceEEecCcc
Confidence 238899997654
No 10
>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.
Probab=99.48 E-value=5.5e-14 Score=107.99 Aligned_cols=56 Identities=36% Similarity=0.660 Sum_probs=53.4
Q ss_pred CEEEEEeccEEEeEeCCccccceeeCchHHHHHHhhhcCCCCeEEEcHHHHHhhhc
Q psy17571 1 MRIGIHSGSVLCGVLGLRKWQFDVWSYDVTLANHLEAGGIPGRVHISRATLDCLQE 56 (151)
Q Consensus 1 ~RIGIhtG~Vi~GviG~~~~~ydv~Gd~Vn~AsRLes~a~pg~I~vS~~t~~~l~~ 56 (151)
+|||||+|+|++|.+|....+||+||++||+|+||++.+.+|+|+||+++++.|++
T Consensus 132 ~riGih~G~v~~~~~g~~~~~~~~~G~~vn~AarL~~~a~~g~i~vs~~~~~~l~~ 187 (194)
T smart00044 132 VRIGIHTGPVVAGVVGITMPRYCLFGDTVNLASRMESVGDPGQILVSEETYSLLRR 187 (194)
T ss_pred EEEEEeccceEEEecCCCCceeEEeChHHHHHHHHHhcCCCCeEEECHHHHHHHHh
Confidence 59999999999999999877899999999999999999999999999999999963
No 11
>cd07556 Nucleotidyl_cyc_III Class III nucleotidyl cyclases. Class III nucleotidyl cyclases are the largest, most diverse group of nucleotidyl cyclases (NC's) containing prokaryotic and eukaryotic proteins. They can be divided into two major groups; the mononucleotidyl cyclases (MNC's) and the diguanylate cyclases (DGC's). The MNC's, which include the adenylate cyclases (AC's) and the guanylate cyclases (GC's), have a conserved cyclase homology domain (CHD), while the DGC's have a conserved GGDEF domain, named after a conserved motif within this subgroup. Their products, cyclic guanylyl and adenylyl nucleotides, are second messengers that play important roles in eukaryotic signal transduction and prokaryotic sensory pathways.
Probab=70.10 E-value=3.6 Score=28.15 Aligned_cols=26 Identities=38% Similarity=0.589 Sum_probs=22.5
Q ss_pred ccceeeCchHHHHHHhhhcCCCCeEE
Q psy17571 20 WQFDVWSYDVTLANHLEAGGIPGRVH 45 (151)
Q Consensus 20 ~~ydv~Gd~Vn~AsRLes~a~pg~I~ 45 (151)
..++.+|+.+|.|++++..+++++|+
T Consensus 108 ~~~~~~~~~~~~a~~a~~~a~~~~i~ 133 (133)
T cd07556 108 PQYDVWGALVNLASRMESQAKAGQVL 133 (133)
T ss_pred ccceEEcHHHHHHHHHHhcCCCCCcC
Confidence 45678999999999999999988763
No 12
>COG5616 Predicted integral membrane protein [Function unknown]
Probab=44.45 E-value=11 Score=28.62 Aligned_cols=24 Identities=4% Similarity=-0.291 Sum_probs=17.7
Q ss_pred cCCCcccccCCCCccCCcCccccc
Q psy17571 99 ISRSRLWSEDSGAQQDSRNSVSSQ 122 (151)
Q Consensus 99 ~~~~~~~~~~~p~~~~s~~~~~~~ 122 (151)
....+|+++++||.|||.......
T Consensus 20 ~~p~~psiAVlPF~nls~dp~q~~ 43 (152)
T COG5616 20 SIPAKPSIAVLPFVNLSGDPEQEY 43 (152)
T ss_pred CCCCCCcEEEeccccCCCCHhHhh
Confidence 334578899999999988666544
No 13
>PRK12370 invasion protein regulator; Provisional
Probab=43.14 E-value=14 Score=32.93 Aligned_cols=14 Identities=7% Similarity=0.157 Sum_probs=11.4
Q ss_pred CCCCccccccCCCC
Q psy17571 136 TYQDKTRSIPYDDI 149 (151)
Q Consensus 136 ~~~~~~~~~p~~~~ 149 (151)
+..|+++||||+|.
T Consensus 119 ~~~~siaVLPF~n~ 132 (553)
T PRK12370 119 PTTHTLAILPFQMQ 132 (553)
T ss_pred CCCCCeEEeCCCCC
Confidence 45689999999984
No 14
>PRK11906 transcriptional regulator; Provisional
Probab=32.52 E-value=20 Score=31.87 Aligned_cols=14 Identities=14% Similarity=0.185 Sum_probs=12.1
Q ss_pred CCCCccccccCCCC
Q psy17571 136 TYQDKTRSIPYDDI 149 (151)
Q Consensus 136 ~~~~~~~~~p~~~~ 149 (151)
++.|+.+||||.|+
T Consensus 115 ~~~psIAVLPF~n~ 128 (458)
T PRK11906 115 TSDYSIAIFPFTTS 128 (458)
T ss_pred CCCCceEEeccccc
Confidence 66799999999887
No 15
>PF07335 Glyco_hydro_75: Fungal chitosanase of glycosyl hydrolase group 75; InterPro: IPR009939 This family consists of chitosanase proteins. Chitin, xylan, 6-O-sulphated chitosan and O-carboxymethyl chitin are indigestible by chitosanase [].
Probab=28.88 E-value=26 Score=26.64 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=18.8
Q ss_pred EEEEeccEEEeEeCCccccceeeCch
Q psy17571 3 IGIHSGSVLCGVLGLRKWQFDVWSYD 28 (151)
Q Consensus 3 IGIhtG~Vi~GviG~~~~~ydv~Gd~ 28 (151)
.||.-|+|++=+. ..+..|-||||+
T Consensus 61 ~Gi~~gsv~aVv~-~~k~~y~I~GDt 85 (156)
T PF07335_consen 61 HGIKPGSVAAVVC-NGKVVYAIVGDT 85 (156)
T ss_pred cCCCCCcEEEEEE-CCEEEEEEEecc
Confidence 4777788777444 567889999996
No 16
>PF10655 DUF2482: Hypothetical protein of unknown function (DUF2482); InterPro: IPR018917 This entry is represented by Bacteriophage 80, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. All the members of this very small, very short family are derived from bacteriophages, of the SA bacteriophages 11, Mu50B, system, and from the Staphylococcal_phi-Mu50B-like_prophages subsystem. All members are hypothetical proteins.
Probab=28.73 E-value=30 Score=24.30 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=23.4
Q ss_pred EEEEEeccEEEeEeCCccccceeeCchHHHHHHhhhcC
Q psy17571 2 RIGIHSGSVLCGVLGLRKWQFDVWSYDVTLANHLEAGG 39 (151)
Q Consensus 2 RIGIhtG~Vi~GviG~~~~~ydv~Gd~Vn~AsRLes~a 39 (151)
-||+.-|+++.. .-++.|+.+++|.-|-...
T Consensus 44 ~igv~~GD~~~s-------s~~alG~~~~lanlL~n~~ 74 (100)
T PF10655_consen 44 TIGVSNGDFISS-------SHCALGNPFGLANLLDNAD 74 (100)
T ss_pred eeccccCccccc-------cchhhccHHHHHHHHhhhh
Confidence 378888887754 2389999999999876543
No 17
>PF09652 Cas_VVA1548: Putative CRISPR-associated protein (Cas_VVA1548); InterPro: IPR013443 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 95 amino acids found exclusively in species with CRISPR repeats. In all bacterial species that contain this entry, the genes encoding the proteins are in the midst of a cluster of cas genes.
Probab=25.64 E-value=64 Score=22.58 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=16.0
Q ss_pred EeccEEEeEeCCccccceeeCchHHHHHHhhhcCC
Q psy17571 6 HSGSVLCGVLGLRKWQFDVWSYDVTLANHLEAGGI 40 (151)
Q Consensus 6 htG~Vi~GviG~~~~~ydv~Gd~Vn~AsRLes~a~ 40 (151)
.-|+++.|.+ .||+|+.++..+.
T Consensus 33 ~~GD~ViGtL------------PvhLaA~vc~kGa 55 (93)
T PF09652_consen 33 QPGDVVIGTL------------PVHLAAEVCEKGA 55 (93)
T ss_pred cCCCEEEEeC------------cHHHHHHHHhCCc
Confidence 3466666654 6999999986553
Done!