RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17571
(151 letters)
>gnl|CDD|201086 pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic
domain.
Length = 184
Score = 86.9 bits (216), Expect = 3e-22
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Query: 1 MRIGIHSGSVLCGVLGLRKWQFDVWSYDVTLANHLEAGGIPGRVHISRATLDCLQEMYEV 60
+R+GIH+G V+ GV+G R+ ++DVW V LA+ +E+ G+PG++H+S T L+ +
Sbjct: 102 VRVGIHTGPVVAGVIGARRPRYDVWGDTVNLASRMESTGVPGKIHVSEETYRLLKTREQF 161
Query: 61 EPGYGDTRDSYLKE--HQVETFLIKS 84
E R + ++ET+ +
Sbjct: 162 EF---TERGEVEVKGKGKMETYFLNG 184
>gnl|CDD|143636 cd07302, CHD, cyclase homology domain. Catalytic domains of the
mononucleotidyl cyclases (MNC's), also called cyclase
homology domains (CHDs), are part of the class III
nucleotidyl cyclases. This class includes eukaryotic and
prokaryotic adenylate cyclases (AC's) and guanylate
cyclases (GC's). They seem to share a common catalytic
mechanism in their requirement for two magnesium ions to
bind the polyphosphate moiety of the nucleotide.
Length = 177
Score = 77.6 bits (192), Expect = 1e-18
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 1 MRIGIHSGSVLCGVLGLRKWQFDVWSYDVTLANHLEAGGIPGRVHISRATLDCLQEM-YE 59
+RIGIH+G V+ GV+G + ++ V V LA LE+ PG++ +S AT + L + +E
Sbjct: 97 LRIGIHTGPVVAGVVGSERPEYTVIGDTVNLAARLESLAKPGQILVSEATYELLGDAGFE 156
Query: 60 VEP 62
E
Sbjct: 157 FEE 159
>gnl|CDD|214485 smart00044, CYCc, Adenylyl- / guanylyl cyclase, catalytic domain.
Present in two copies in mammalian adenylyl cyclases.
Eubacterial homologues are known. Two residues (Asn,
Arg) are thought to be involved in catalysis. These
cyclases have important roles in a diverse range of
cellular processes.
Length = 194
Score = 76.1 bits (188), Expect = 6e-18
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 1 MRIGIHSGSVLCGVLGLRKWQFDVWSYDVTLANHLEAGGIPGRVHISRATLDCLQEMYE 59
+RIGIH+G V+ GV+G+R ++ ++ V LA+ +E+ G PG++ +S T L
Sbjct: 132 VRIGIHTGPVVAGVVGIRMPRYCLFGDTVNLASRMESAGDPGQIQVSEETYSLLARRGG 190
>gnl|CDD|143637 cd07556, Nucleotidyl_cyc_III, Class III nucleotidyl cyclases.
Class III nucleotidyl cyclases are the largest, most
diverse group of nucleotidyl cyclases (NC's) containing
prokaryotic and eukaryotic proteins. They can be divided
into two major groups; the mononucleotidyl cyclases
(MNC's) and the diguanylate cyclases (DGC's). The
MNC's, which include the adenylate cyclases (AC's) and
the guanylate cyclases (GC's), have a conserved cyclase
homology domain (CHD), while the DGC's have a conserved
GGDEF domain, named after a conserved motif within this
subgroup. Their products, cyclic guanylyl and adenylyl
nucleotides, are second messengers that play important
roles in eukaryotic signal transduction and prokaryotic
sensory pathways.
Length = 133
Score = 55.1 bits (133), Expect = 2e-10
Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 1 MRIGIHSGSVLCGVLGLRKWQFDVWSYDVTLANHLEAGGIPGRVH 45
+RIGIH+G V+ GV+G R Q+DVW V LA+ +E+ G+V
Sbjct: 90 VRIGIHTGPVVVGVIGSR-PQYDVWGALVNLASRMESQAKAGQVL 133
>gnl|CDD|225025 COG2114, CyaA, Adenylate cyclase, family 3 (some proteins contain
HAMP domain) [Signal transduction mechanisms].
Length = 227
Score = 43.7 bits (103), Expect = 8e-06
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 1 MRIGIHSGSVLCGVLGLRKWQFDVWSYDVTLANHLEAGGIPGRVHISRATLDCLQE 56
+RIGIH+G V+ G G + V V A LE+ PG+V +S AT D +++
Sbjct: 137 VRIGIHTGEVVVGNTG----GYTVVGSAVNQAARLESLAKPGQVLLSEATYDLVRD 188
>gnl|CDD|182435 PRK10409, PRK10409, hydrogenase assembly chaperone; Provisional.
Length = 90
Score = 29.0 bits (65), Expect = 0.38
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 47 SRATLDCLQEMYEVEPGYG 65
+R TLD LQ M++VEP G
Sbjct: 64 ARDTLDALQNMFDVEPDVG 82
>gnl|CDD|240462 cd12882, SPRY_RNF123, SPRY domain at N-terminus of ring finger
protein 123. This SPRY domain is found at the
N-terminus of RING finger protein 123 domain (also
known as E3 ubiquitin-protein ligase RNF123). The ring
finger domain motif is present in a variety of
functionally distinct proteins and known to be involved
in protein-protein and protein-DNA interactions. RNF123
displays E3 ubiquitin ligase activity toward the
cyclin-dependent kinase inhibitor p27 (Kip1).
Length = 128
Score = 28.0 bits (63), Expect = 1.3
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 10/47 (21%)
Query: 25 WSYDVTLANHLEAGGIPGRVHISRATLDCLQEMYEVEPGYGDTRDSY 71
W Y+VTL G G + I AT+ C + E G GDT DSY
Sbjct: 13 WMYEVTL-------GTKGIMQIGWATISC---RFTQEEGVGDTPDSY 49
>gnl|CDD|215232 PLN02422, PLN02422, dephospho-CoA kinase.
Length = 232
Score = 27.4 bits (61), Expect = 2.7
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 103 RLWSEDSGAQQDSRNSVSSQGA-----SSGDILDQKSGTYQD 139
RL + D +++ +RN +++Q S DI+ SG+ +D
Sbjct: 142 RLMARDGLSEEQARNRINAQMPLDWKRSKADIVIDNSGSLED 183
>gnl|CDD|219500 pfam07655, Secretin_N_2, Secretin N-terminal domain. This is a
short domain found in bacterial type II/III secretory
system proteins. The architecture of these proteins
suggest that this family may be functionally analogous
to pfam03958.
Length = 95
Score = 26.1 bits (58), Expect = 3.8
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 91 RRGRFHTMISRSRLWSEDSGAQQDSRNSVSSQGASSGDILDQKSGT 136
R G +T ++ + S S + S NS + +SS D SGT
Sbjct: 13 RSGSSNTSVTSGSVSSSGSNSSSSSSNSSNGGSSSSSSSGDSSSGT 58
>gnl|CDD|129130 TIGR00019, prfA, peptide chain release factor 1. This model
describes peptide chain release factor 1 (PrfA, RF-1),
and excludes the related peptide chain release factor 2
(PrfB, RF-2). RF-1 helps recognize and terminate
translation at UAA and UAG stop codons. The
mitochondrial release factors are prfA-like, although
not included above the trusted cutoff for this model.
RF-1 does not have a translational frameshift [Protein
synthesis, Translation factors].
Length = 360
Score = 27.0 bits (60), Expect = 4.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 42 GRVHISRATLDCLQEMYEVEP 62
GR+H S AT+ + E+ EVE
Sbjct: 196 GRIHTSAATVAVMPELEEVEV 216
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 26.5 bits (58), Expect = 7.9
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 18/80 (22%)
Query: 70 SYLKEHQVETFLIKSQEPTKIRRGRFHTMISRSRLWSEDSGAQQDSRNSVSSQGASSGDI 129
SY+ E L+K+ + G ++TMI+ ++ S+ S + ++S
Sbjct: 702 SYIIEQGTHDALMKN------KNGIYYTMINNQKVSSKKSSNNDNDKDS----------- 744
Query: 130 LDQKSGTYQDKTRSIPYDDI 149
D KS Y+D R D++
Sbjct: 745 -DMKSSAYKDSERGYDPDEM 763
>gnl|CDD|236568 PRK09560, nhaA, pH-dependent sodium/proton antiporter; Reviewed.
Length = 389
Score = 26.0 bits (58), Expect = 8.8
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 2 RIGIHSGSVLCGVLG 16
R+GI GS+L +LG
Sbjct: 363 RLGILLGSLLSAILG 377
>gnl|CDD|211578 TIGR00497, hsdM, type I restriction system adenine methylase
(hsdM). Function: methylation of specific adenine
residues; required for both restriction and modification
activities. The ECOR124/3 I enzyme recognizes
5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257:
960-969 (1996)) [DNA metabolism,
Restriction/modification].
Length = 501
Score = 26.1 bits (57), Expect = 8.9
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 93 GRFHTMISRSRLWSEDSGAQQDSRNSVSSQGASSGDILDQKSGTYQDKTRSIPYDDIEI 151
G F T S L + + ++D+ + V SG +L Q +KT + Y EI
Sbjct: 195 GEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEI 253
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.134 0.399
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,508,602
Number of extensions: 640347
Number of successful extensions: 491
Number of sequences better than 10.0: 1
Number of HSP's gapped: 489
Number of HSP's successfully gapped: 17
Length of query: 151
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 63
Effective length of database: 7,034,450
Effective search space: 443170350
Effective search space used: 443170350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.5 bits)