RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17573
(102 letters)
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU;
CAMP-dependent protein kinase,catalytic mechanism, ATP
hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A
{Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E*
1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A*
1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A*
3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Length = 350
Score = 70.0 bits (172), Expect = 6e-16
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 48 RWFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDEYPPDQDPPPADDLTGWD-ADF 102
+WF +W + R + P +PK + D+SNFD+Y ++ ++ G + +F
Sbjct: 295 KWFATTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVSINEKCGKEFTEF 350
Score = 64.6 bits (158), Expect = 6e-14
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 1 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDEYPPDQAIFLSFPCRW---FDGF 53
WF +W + R + P +PK + D+SNFD+Y ++ I +S + F F
Sbjct: 296 WFATTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDY-EEEEIRVSINEKCGKEFTEF 350
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open
conformation, transferase; HET: TPO; 2.80A
{Saccharomyces cerevisiae} SCOP: d.144.1.7
Length = 318
Score = 59.9 bits (146), Expect = 3e-12
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 48 RWFDGFNWEGLRNRTLIPPILPKIRS-QTDSSNFDEYP---PDQDPPPADDLTGWDADF 102
WF WE L +R + P P I+ Q D+S FD+YP + D DF
Sbjct: 260 PWFKEVVWEKLLSRNIETPYEPPIQQGQGDTSQFDKYPEEDINYGVQGEDPYADLFRDF 318
Score = 55.2 bits (134), Expect = 1e-10
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 1 WFDGFNWEGLRNRTLIPPILPKIRS-QTDSSNFDEYP---PDQAIFLSFPCR-WFDGF 53
WF WE L +R + P P I+ Q D+S FD+YP + + P F F
Sbjct: 261 WFKEVVWEKLLSRNIETPYEPPIQQGQGDTSQFDKYPEEDINYGVQGEDPYADLFRDF 318
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase,
inhibitor, transf transferase inhibitor complex; HET:
0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A*
2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A*
2h9v_A*
Length = 410
Score = 59.3 bits (144), Expect = 5e-12
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 48 RWFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDEYP----PDQDPPPADDLTGWDADF 102
+F W R + P++P + S D+SNFD+ ++ P G F
Sbjct: 331 LFFKNDQWAWETLRDTVAPVVPDLSSDIDTSNFDDLEEDKGEEETFPIPKAFVGNQLPF 389
Score = 59.3 bits (144), Expect = 5e-12
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 1 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDEYPPDQAIFLSFP 46
+F W R + P++P + S D+SNFD+ D+ +FP
Sbjct: 332 FFKNDQWAWETLRDTVAPVVPDLSSDIDTSNFDDLEEDKGEEETFP 377
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA;
HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Length = 437
Score = 52.1 bits (125), Expect = 2e-09
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 49 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDEYPPDQDPPPADD 94
+F G +W+ +RN P +P++ S TD+SNFD
Sbjct: 341 FFSGIDWDNIRN--CEAPYIPEVSSPTDTSNFDVDDDCLKNSETMP 384
Score = 51.3 bits (123), Expect = 3e-09
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 1 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDEYPPDQAIFLSFP 46
+F G +W+ +RN P +P++ S TD+SNFD + P
Sbjct: 341 FFSGIDWDNIRN--CEAPYIPEVSSPTDTSNFDVDDDCLKNSETMP 384
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase;
HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7
PDB: 2jed_A*
Length = 345
Score = 48.8 bits (117), Expect = 2e-08
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 1 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDEY---------PPDQAIFLSFPCRWFD 51
F NWE L + + PP PK++S D SNFD+ D+A+ S F
Sbjct: 272 LFREINWEELERKEIDPPFRPKVKSPFDCSNFDKEFLNEKPRLSFADRALINSMDQNMFR 331
Query: 52 GF 53
F
Sbjct: 332 NF 333
Score = 46.1 bits (110), Expect = 2e-07
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 49 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDEY----PPDQDPPPADDLTGWD 99
F NWE L + + PP PK++S D SNFD+ P + D
Sbjct: 272 LFREINWEELERKEIDPPFRPKVKSPFDCSNFDKEFLNEKPRLSFADRALINSMD 326
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase,
ATP-BI nucleotide-binding, cardiac contractility, muscle
different; HET: BI8; 2.80A {Homo sapiens}
Length = 412
Score = 48.6 bits (116), Expect = 3e-08
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 49 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDEYPPDQDPPPADD 94
+F G +W+GLR+ +PP P TD+ NFD +
Sbjct: 330 FFFGLDWDGLRD--SVPPFTPDFEGATDTCNFDLVEDGLTAMVSGG 373
Score = 47.8 bits (114), Expect = 6e-08
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 1 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDEYPPDQAIFLSFP 46
+F G +W+GLR+ +PP P TD+ NFD +S
Sbjct: 330 FFFGLDWDGLRD--SVPPFTPDFEGATDTCNFDLVEDGLTAMVSGG 373
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo
sapiens} PDB: 3a8w_A* 1zrz_A*
Length = 345
Score = 48.4 bits (116), Expect = 4e-08
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
Query: 1 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDEY---------PPDQAIFLSFPCRWFD 51
+F +W+ + + ++PP P I + NFD P D I F+
Sbjct: 278 FFRNVDWDMMEQKQVVPPFKPNISGEFGLDNFDSQFTNEPVQLTPDDDDIVRKIDQSEFE 337
Query: 52 GF 53
GF
Sbjct: 338 GF 339
Score = 46.1 bits (110), Expect = 3e-07
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 49 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDEY----PPDQDPPPADDLTGWD 99
+F +W+ + + ++PP P I + NFD P P D + D
Sbjct: 278 FFRNVDWDMMEQKQVVPPFKPNISGEFGLDNFDSQFTNEPVQLTPDDDDIVRKID 332
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity,
atypical PKC, trans transferase substrate complex; HET:
TPO ADE; 2.40A {Mus musculus}
Length = 396
Score = 47.7 bits (114), Expect = 6e-08
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
Query: 1 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDEY---------PPDQAIFLSFPCRWFD 51
+F +W+ + + ++PP P I + NFD P D I F+
Sbjct: 321 FFRNVDWDMMEQKQVVPPFKPNISGEFGLDNFDSQFTNEPVQLTPDDDDIVRKIDQSEFE 380
Query: 52 GF 53
GF
Sbjct: 381 GF 382
Score = 45.4 bits (108), Expect = 4e-07
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 49 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDEY----PPDQDPPPADDLTGWD 99
+F +W+ + + ++PP P I + NFD P P D + D
Sbjct: 321 FFRNVDWDMMEQKQVVPPFKPNISGEFGLDNFDSQFTNEPVQLTPDDDDIVRKID 375
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase,
transferase-transferase inhibito; HET: TPO 07U; 2.05A
{Homo sapiens}
Length = 353
Score = 47.6 bits (114), Expect = 7e-08
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 1 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDEY---------PPDQAIFLSFPCRWFD 51
+F +W L +R + PP P+I+S+ D SNFD P D+ F
Sbjct: 283 FFKEIDWAQLNHRQIEPPFRPRIKSREDVSNFDPDFIKEEPVLTPIDEGHLPMINQDEFR 342
Query: 52 GF 53
F
Sbjct: 343 NF 344
Score = 45.7 bits (109), Expect = 3e-07
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 49 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDEY---------PPDQDPPPADD 94
+F +W L +R + PP P+I+S+ D SNFD P D+ P +
Sbjct: 283 FFKEIDWAQLNHRQIEPPFRPRIKSREDVSNFDPDFIKEEPVLTPIDEGHLPMIN 337
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition,
allosteric inhibitor, kinase inhibitor hydrophobic
collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB:
3o96_A*
Length = 446
Score = 47.4 bits (113), Expect = 7e-08
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 48 RWFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDE 82
R+F G W+ + + L PP P++ S+TD+ FDE
Sbjct: 406 RFFAGIVWQHVYEKKLSPPFKPQVTSETDTRYFDE 440
Score = 47.0 bits (112), Expect = 1e-07
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 1 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDE 34
+F G W+ + + L PP P++ S+TD+ FDE
Sbjct: 407 FFAGIVWQHVYEKKLSPPFKPQVTSETDTRYFDE 440
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase,
apoptosis, ATP-binding, cytoplasm, endoplasmic
reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A
{Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Length = 373
Score = 47.3 bits (113), Expect = 8e-08
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 49 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDEYPPDQDPPPADDLT 96
+F NW+ L N+ + PP P + D +FD ++ P A
Sbjct: 296 FFSLINWDDLINKKITPPFNPNVSGPNDLRHFDPEFTEEPVPNAIGKA 343
Score = 46.1 bits (110), Expect = 2e-07
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 1 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDE 34
+F NW+ L N+ + PP P + D +FD
Sbjct: 296 FFSLINWDDLINKKITPPFNPNVSGPNDLRHFDP 329
>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of
P90 ribosomal S6 kinase 2, ATP- binding,
nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus
musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A*
Length = 325
Score = 47.2 bits (113), Expect = 8e-08
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 48 RWFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDE 82
+F +W L R + PP P D+ FD
Sbjct: 283 SFFSTIDWNKLYRREIHPPFKPATGRPEDTFYFDP 317
Score = 47.2 bits (113), Expect = 9e-08
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 1 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDE 34
+F +W L R + PP P D+ FD
Sbjct: 284 FFSTIDWNKLYRREIHPPFKPATGRPEDTFYFDP 317
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive,
active, ribosomal S6 kinase, activation, alternative
initiation, ATP-binding; HET: TPO STU; 2.35A {Homo
sapiens} PDB: 3a61_A* 3a60_A*
Length = 327
Score = 47.2 bits (113), Expect = 9e-08
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 48 RWFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDE 82
+F NWE L R + PP P ++S+ D S FD
Sbjct: 278 PFFRHINWEELLARKVEPPFKPLLQSEEDVSQFDS 312
Score = 46.8 bits (112), Expect = 1e-07
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 1 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDE 34
+F NWE L R + PP P ++S+ D S FD
Sbjct: 279 FFRHINWEELLARKVEPPFKPLLQSEEDVSQFDS 312
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase,
phosphorylation, serine/threonine protein kinase; 1.8A
{Homo sapiens} SCOP: d.144.1.7
Length = 355
Score = 45.7 bits (109), Expect = 3e-07
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 48 RWFDGFNWEGLRNRTLIPPILPKIRSQTDSSNF 80
+F NW+ L + + P P IR + D SNF
Sbjct: 323 LFFQKINWDDLAAKKVPAPFKPVIRDELDVSNF 355
Score = 45.4 bits (108), Expect = 4e-07
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 1 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNF 32
+F NW+ L + + P P IR + D SNF
Sbjct: 324 FFQKINWDDLAAKKVPAPFKPVIRDELDVSNF 355
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase,
transferase, serine/threonine-protein kinase; HET: TPO
ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A*
2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A*
3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A
1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Length = 337
Score = 45.3 bits (108), Expect = 4e-07
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 1 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDE 34
+F NW+ + + L+PP P++ S+ D+ FD+
Sbjct: 263 FFLSINWQDVVQKKLLPPFKPQVTSEVDTRYFDD 296
Score = 45.3 bits (108), Expect = 4e-07
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 49 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDE 82
+F NW+ + + L+PP P++ S+ D+ FD+
Sbjct: 263 FFLSINWQDVVQKKLLPPFKPQVTSEVDTRYFDD 296
>3pvu_A Beta-adrenergic receptor kinase 1; transferase,
serine/threonine-protein kinase, ATP-binding, I
membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A*
3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A*
1bak_A
Length = 695
Score = 43.3 bits (102), Expect = 2e-06
Identities = 16/103 (15%), Positives = 29/103 (28%), Gaps = 17/103 (16%)
Query: 1 WFDGFNWEGLRNRTLIPPILPKIR-----SQTDSSNFDEY--------PPDQAIFLSF-- 45
+F +W+ + + PP++P D +FDE DQ ++ +F
Sbjct: 452 FFRSLDWQMVFLQKYPPPLIPPRGEVNAADAFDIGSFDEEDTKGIKLLDSDQELYRNFPL 511
Query: 46 --PCRWFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDEYPPD 86
RW L + + E
Sbjct: 512 TISERWQQEVAETVFDTINAETDRLEARKKTKNKQLGHEEDYA 554
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase,
transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB:
3iw4_A*
Length = 353
Score = 43.0 bits (102), Expect = 3e-06
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 1 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDEY---------PPDQAIFLSFPCRWFD 51
+F +WE L + + PP PK ++ NFD + PPDQ + + F+
Sbjct: 279 FFRYIDWEKLERKEIQPPYKPKACG-RNAENFDRFFTRHPPVLTPPDQEVIRNIDQSEFE 337
Query: 52 GFNW 55
GF++
Sbjct: 338 GFSF 341
Score = 40.7 bits (96), Expect = 2e-05
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 49 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDEY----PPDQDPPPADDLTGWD 99
+F +WE L + + PP PK ++ NFD + PP PP + + D
Sbjct: 279 FFRYIDWEKLERKEIQPPYKPKACG-RNAENFDRFFTRHPPVLTPPDQEVIRNID 332
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 43.1 bits (101), Expect = 3e-06
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 10/64 (15%)
Query: 1 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDEY---------PPDQAIFLSFPCRWFD 51
+F +WE L + + PP PK S ++ NFD + PPDQ + + F+
Sbjct: 600 FFRYIDWEKLERKEIQPPYKPKA-SGRNAENFDRFFTRHPPVLTPPDQEVIRNIDQSEFE 658
Query: 52 GFNW 55
GF++
Sbjct: 659 GFSF 662
Score = 41.2 bits (96), Expect = 2e-05
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 49 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDE----YPPDQDPPPADDLTGWD 99
+F +WE L + + PP PK S ++ NFD +PP PP + + D
Sbjct: 600 FFRYIDWEKLERKEIQPPYKPKA-SGRNAENFDRFFTRHPPVLTPPDQEVIRNID 653
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP;
2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Length = 576
Score = 39.0 bits (91), Expect = 6e-05
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 11/57 (19%)
Query: 1 WFDGFNWEGLRNRTLIPPILPKIRSQ--TDSSNFDEY---------PPDQAIFLSFP 46
F N++ L L PP P ++ D + +++ P DQ + F
Sbjct: 447 LFKKLNFKRLGAGMLEPPFKPDPQAIYCKDVLDIEQFSTVKGVELEPTDQDFYQKFA 503
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein
coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl
ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB:
3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Length = 543
Score = 38.6 bits (90), Expect = 9e-05
Identities = 13/57 (22%), Positives = 16/57 (28%), Gaps = 11/57 (19%)
Query: 1 WFDGFNWEGLRNRTLIPPILPKIR-----SQTDSSNFDEY------PPDQAIFLSFP 46
F +W L L PP +P R + D F D F F
Sbjct: 451 LFRDISWRQLEAGMLTPPFVPDSRTVYAKNIQDVGAFSTVKGVAFEKADTEFFQEFA 507
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics,
structural genomics consortium, SGC, TR; HET: STU; 2.29A
{Homo sapiens}
Length = 384
Score = 37.3 bits (87), Expect = 3e-04
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 1 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDE 34
+ + NW+ + + LIP +P N D
Sbjct: 274 YMNDINWDAVFQKRLIPGFIPNK----GRLNCDP 303
Score = 37.3 bits (87), Expect = 3e-04
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 49 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDE 82
+ + NW+ + + LIP +P N D
Sbjct: 274 YMNDINWDAVFQKRLIPGFIPNK----GRLNCDP 303
>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB,
inhibitor, LY333531, diabetes, cancer, transferase,
serine/threonine-protein kinase; HET: SEP LY4; 1.7A
{Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A*
1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A*
3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A*
3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ...
Length = 310
Score = 29.5 bits (67), Expect = 0.15
Identities = 6/20 (30%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 48 RWFDGFNWEGLRNRTLIPPI 67
+F+ WE L +T P +
Sbjct: 290 PFFESVTWENLHQQT-PPKL 308
Score = 28.7 bits (65), Expect = 0.23
Identities = 6/19 (31%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 1 WFDGFNWEGLRNRTLIPPI 19
+F+ WE L +T P +
Sbjct: 291 FFESVTWENLHQQT-PPKL 308
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural
genomics, structural genomics consortium, SGC; 1.80A
{Toxoplasma gondii}
Length = 413
Score = 27.3 bits (60), Expect = 0.78
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 59 RNRTLIPPILPKIRSQTDSSNFDEYPPDQDPPPAD 93
+ RT + LP ++ + + PP P +
Sbjct: 369 QLRTELSAALPLYQTDGEPTREGGAPPSGTSQPDE 403
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia,
iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A
{Methanosarcina barkeri}
Length = 807
Score = 26.3 bits (57), Expect = 2.3
Identities = 8/35 (22%), Positives = 9/35 (25%)
Query: 18 PILPKIRSQTDSSNFDEYPPDQAIFLSFPCRWFDG 52
P L R + D Y P C G
Sbjct: 48 PGLEGYRDDWNFKLLDRYEPVITPMCDQCCYCTYG 82
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 24.9 bits (53), Expect = 5.5
Identities = 6/25 (24%), Positives = 9/25 (36%), Gaps = 5/25 (20%)
Query: 68 LPKIRSQTDSSNFDEYPPDQDPPPA 92
L K+ ++ Y D P A
Sbjct: 22 LKKL-----QASLKLYADDSAPALA 41
>3kal_A Homoglutathione synthetase; dimer, ATP-grAsp domain; HET: ADP
HGS; 1.90A {Glycine max} PDB: 3kak_A* 3kaj_A*
Length = 499
Score = 25.1 bits (54), Expect = 5.7
Identities = 5/26 (19%), Positives = 7/26 (26%)
Query: 69 PKIRSQTDSSNFDEYPPDQDPPPADD 94
+ D + PP D D
Sbjct: 11 LVEEAAADGDSSAAAPPLFDYHRIDQ 36
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo
domain, mRNA turnover, RRN processing, RNA binding, DNA
binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Length = 1155
Score = 24.9 bits (53), Expect = 6.9
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 8/57 (14%)
Query: 11 RNRTLIPPILPKIRSQTDSSNFDEYPPDQAIFLSFPCRWFDGFNWEGLRNRTLIPPI 67
R++ LIP + + S D YP + + +WE + I +
Sbjct: 579 RSKNLIPVVYRPLMYDEHSPILDFYPNEVEL-----DLNGKTADWEAV---VKISFV 627
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.143 0.499
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,758,281
Number of extensions: 88506
Number of successful extensions: 191
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 55
Length of query: 102
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 35
Effective length of database: 4,831,086
Effective search space: 169088010
Effective search space used: 169088010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)