RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17573
(102 letters)
>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 350
Score = 55.6 bits (133), Expect = 4e-11
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 48 RWFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDEYPPDQDPPPADDLTG 97
+WF +W + R + P +PK + D+SNFD+Y ++ ++ G
Sbjct: 295 KWFATTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVSINEKCG 344
Score = 54.8 bits (131), Expect = 7e-11
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 1 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDEYPPDQ 39
WF +W + R + P +PK + D+SNFD+Y ++
Sbjct: 296 WFATTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEE 334
>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo
sapiens) [TaxId: 9606]}
Length = 320
Score = 53.6 bits (128), Expect = 2e-10
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 1 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDEYPPDQAIFLSFP 46
F NWE L + + PP PK++S D SNFD+ ++ LSF
Sbjct: 257 LFREINWEELERKEIDPPFRPKVKSPFDCSNFDKEFLNEKPRLSFA 302
Score = 52.0 bits (124), Expect = 6e-10
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 49 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDEYPPDQDP 89
F NWE L + + PP PK++S D SNFD+ ++ P
Sbjct: 257 LFREINWEELERKEIDPPFRPKVKSPFDCSNFDKEFLNEKP 297
>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 337
Score = 52.5 bits (125), Expect = 5e-10
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 1 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDEYPPDQAIFLSFP 46
+F NW+ + + L+PP P++ S+ D+ FD+ Q+I ++ P
Sbjct: 263 FFLSINWQDVVQKKLLPPFKPQVTSEVDTRYFDDEFTAQSITITPP 308
Score = 52.5 bits (125), Expect = 5e-10
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 49 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDEYPPDQDPP 90
+F NW+ + + L+PP P++ S+ D+ FD+ Q
Sbjct: 263 FFLSINWQDVVQKKLLPPFKPQVTSEVDTRYFDDEFTAQSIT 304
>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 316
Score = 48.2 bits (114), Expect = 1e-08
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 49 WFDGFNWEGLRNRTLIPPILPKIR-SQTDSSNFDEYPPDQDPPPADD 94
WF WE L +R + P P I+ Q D+S FD+YP +
Sbjct: 259 WFKEVVWEKLLSRNIETPYEPPIQQGQGDTSQFDKYPEEDINYGVQG 305
Score = 47.8 bits (113), Expect = 2e-08
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 1 WFDGFNWEGLRNRTLIPPILPKIR-SQTDSSNFDEYPPD 38
WF WE L +R + P P I+ Q D+S FD+YP +
Sbjct: 259 WFKEVVWEKLLSRNIETPYEPPIQQGQGDTSQFDKYPEE 297
>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2
{Cow (Bos taurus) [TaxId: 9913]}
Length = 364
Score = 47.4 bits (112), Expect = 3e-08
Identities = 10/54 (18%), Positives = 21/54 (38%)
Query: 49 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDEYPPDQDPPPADDLTGWDADF 102
+F +W+ + + PP++P + FD D++ L D +
Sbjct: 267 FFRSLDWQMVFLQKYPPPLIPPRGEVNAADAFDIGSFDEEDTKGIKLLDSDQEL 320
Score = 47.0 bits (111), Expect = 4e-08
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 13/62 (20%)
Query: 1 WFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDEY-------------PPDQAIFLSFPC 47
+F +W+ + + PP++P + FD DQ ++ +FP
Sbjct: 267 FFRSLDWQMVFLQKYPPPLIPPRGEVNAADAFDIGSFDEEDTKGIKLLDSDQELYRNFPL 326
Query: 48 RW 49
Sbjct: 327 TI 328
>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 322
Score = 41.4 bits (96), Expect = 4e-06
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 1 WFDGFNWEGLRNRTLIPPILPKIRSQTD 28
+F NW+ L + + P P IR + D
Sbjct: 294 FFQKINWDDLAAKKVPAPFKPVIRDELD 321
Score = 41.4 bits (96), Expect = 4e-06
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 49 WFDGFNWEGLRNRTLIPPILPKIRSQTD 76
+F NW+ L + + P P IR + D
Sbjct: 294 FFQKINWDDLAAKKVPAPFKPVIRDELD 321
>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein
kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 28.8 bits (64), Expect = 0.10
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 1 WFDGFNWEGLRNRTLIPPILP 21
+F+ WE L +T PP L
Sbjct: 269 FFESVTWENLHQQT--PPKLT 287
Score = 28.8 bits (64), Expect = 0.10
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 49 WFDGFNWEGLRNRTLIPPILP 69
+F+ WE L +T PP L
Sbjct: 269 FFESVTWENLHQQT--PPKLT 287
>d1l3la2 d.110.5.1 (A:2-169) Transcription factor TraR, N-terminal
domain {Agrobacterium tumefaciens [TaxId: 358]}
Length = 168
Score = 22.7 bits (48), Expect = 9.7
Identities = 4/58 (6%), Positives = 16/58 (27%), Gaps = 3/58 (5%)
Query: 36 PPDQAIFLSFPCRWFDGFNWEGLRNRTLIPPILPKIRSQTDSSNFDEYPPDQDPPPAD 93
++ +W + + + P++ + RS+ + +
Sbjct: 43 HRHITAVTNYHRQWQSTYFDKKFE---ALDPVVKRARSRKHIFTWSGEHERPTLSKDE 97
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.143 0.499
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 458,369
Number of extensions: 19735
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 20
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.4 bits)