BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17574
(143 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q60611|SATB1_MOUSE DNA-binding protein SATB1 OS=Mus musculus GN=Satb1 PE=1 SV=2
Length = 764
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 7/107 (6%)
Query: 2 GKSLPVHCVVEAVYSVHHWKSAKNSRKAILETDTYVITPTNTNFQDLVPVALQRLGYSKE 61
G LPV CVVE H+++A E +V+ + F L+ +AL LGYS
Sbjct: 71 GTMLPVFCVVE------HYENAI-EYDCKEEHAEFVLVRKDMLFNQLIEMALLSLGYSHS 123
Query: 62 NFYSAKGYVGIKNWKPISISKISENPATTVGDILGELTTVATLRIKI 108
+ AKG + + W P+ +S +++ P TV D+L ++ V TL+I++
Sbjct: 124 SAAQAKGLIQVGKWNPVPLSYVTDAPDATVADMLQDVYHVVTLKIQL 170
>sp|Q01826|SATB1_HUMAN DNA-binding protein SATB1 OS=Homo sapiens GN=SATB1 PE=1 SV=1
Length = 763
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 7/107 (6%)
Query: 2 GKSLPVHCVVEAVYSVHHWKSAKNSRKAILETDTYVITPTNTNFQDLVPVALQRLGYSKE 61
G LPV CVVE H+++A E +V+ + F L+ +AL LGYS
Sbjct: 71 GTMLPVFCVVE------HYENAI-EYDCKEEHAEFVLVRKDMLFNQLIEMALLSLGYSHS 123
Query: 62 NFYSAKGYVGIKNWKPISISKISENPATTVGDILGELTTVATLRIKI 108
+ AKG + + W P+ +S +++ P TV D+L ++ V TL+I++
Sbjct: 124 SAAQAKGLIQVGKWNPVPLSYVTDAPDATVADMLQDVYHVVTLKIQL 170
>sp|Q9UPW6|SATB2_HUMAN DNA-binding protein SATB2 OS=Homo sapiens GN=SATB2 PE=1 SV=2
Length = 733
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 24/153 (15%)
Query: 2 GKSLPVHCVVEAVYSVHHWKSAKNSRKAILETDTYVITPTNTNFQDLVPVALQRLGYSKE 61
G +PV CVVE + + + + E +V+ + F LV AL LGYS
Sbjct: 57 GLMIPVFCVVEQLDGSLEYDNRE-------EHAEFVLVRKDVLFSQLVETALLALGYSHS 109
Query: 62 NFYSAKGYVGIKNWKPISISKISENPATTVGDILGELTTVATLRIKIFRTRPCILAEMKD 121
+ A+G + + W P+ +S +++ P TV D+L ++ V TL+I++ + C ++++D
Sbjct: 110 SAAQAQGIIKLGRWNPLPLSYVTDAPDATVADMLQDVYHVVTLKIQL---QSC--SKLED 164
Query: 122 ------------KLLRLLLVQSQTQIIASGCPL 142
L+ LL + +A CPL
Sbjct: 165 LPAEQWNHATVRNALKELLKEMNQSTLAKECPL 197
>sp|Q8VI24|SATB2_MOUSE DNA-binding protein SATB2 OS=Mus musculus GN=Satb2 PE=1 SV=1
Length = 733
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 24/153 (15%)
Query: 2 GKSLPVHCVVEAVYSVHHWKSAKNSRKAILETDTYVITPTNTNFQDLVPVALQRLGYSKE 61
G +PV CVVE + + + + E +V+ + F LV AL LGYS
Sbjct: 57 GLMIPVFCVVEQLDGSLEYDNRE-------EHAEFVLVRKDVLFSQLVETALLALGYSHS 109
Query: 62 NFYSAKGYVGIKNWKPISISKISENPATTVGDILGELTTVATLRIKIFRTRPCILAEMKD 121
+ A+G + + W P+ +S +++ P TV D+L ++ V TL+I++ + C ++++D
Sbjct: 110 SAAQAQGIIKLGRWNPLPLSYVTDAPDATVADMLQDVYHVVTLKIQL---QSC--SKLED 164
Query: 122 ------------KLLRLLLVQSQTQIIASGCPL 142
L+ LL + +A CPL
Sbjct: 165 LPAEQWNHATVRNALKELLKEMNQSTLAKECPL 197
>sp|Q6CMA5|ATP22_KLULA Mitochondrial translation factor ATP22 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=ATP22 PE=3 SV=1
Length = 711
Score = 37.0 bits (84), Expect = 0.042, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 31/64 (48%)
Query: 7 VHCVVEAVYSVHHWKSAKNSRKAILETDTYVITPTNTNFQDLVPVALQRLGYSKENFYSA 66
V+C+++ + S H W K +K + PT+ N +L+ + + + EN+ A
Sbjct: 29 VYCIIDTIKSSHEWHKLKQDQKMQAYVAEALTNPTSENVSELMQLKRKMMRTLNENYNLA 88
Query: 67 KGYV 70
GY+
Sbjct: 89 LGYI 92
>sp|Q9HK31|SYL_THEAC Leucine--tRNA ligase OS=Thermoplasma acidophilum (strain ATCC 25905
/ DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=leuS
PE=3 SV=1
Length = 910
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 33 TDTYV-ITPTNTNFQDLVPVALQRLGYSKENFYSAKGYV 70
+DTYV + P + NFQD ++R G + + YSA YV
Sbjct: 763 SDTYVSVDPFDENFQDRYERTVRRFGMTCDQMYSAMDYV 801
>sp|P0C6F1|DYH2_MOUSE Dynein heavy chain 2, axonemal OS=Mus musculus GN=Dnah2 PE=2 SV=1
Length = 4456
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 2 GKSLPVHCVVEAVYSVHHWKSAKNSRKAILETDTY-VITPTN 42
G +H V ++ HW A+ S+K +LE Y +TPTN
Sbjct: 2969 GTQENIHRKVAQIFVTMHWSVAQYSQKMLLELRRYNYVTPTN 3010
>sp|Q38WW3|DER_LACSS GTPase Der OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=der
PE=3 SV=1
Length = 436
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 31 LETDTYVITPTNTNFQDLVPVALQRLGYSKENFYSAKGYVGIKNWKPISISKISEN---- 86
LE D + T F+D + Q L Y+ F SAK V ++N P I +SEN
Sbjct: 299 LEKDNH----TMKEFEDHIRNQFQYLDYAPIIFVSAKTGVRLQNL-PAMIELVSENQNRR 353
Query: 87 -PATTVGDILGELTTV 101
+ + D+L E TTV
Sbjct: 354 IQSALLNDVLMEATTV 369
>sp|O74971|ATG5_SCHPO Autophagy protein 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=atg5 PE=1 SV=1
Length = 261
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 32 ETDTYVITPTNTNFQDLVPVALQRLGYSKENFYSAKGYVG 71
ETDTY N ++ D P+A++ L +SK F K Y+G
Sbjct: 150 ETDTYWNAILNHDYYDFRPIAIKIL-FSKSKFIPLKIYLG 188
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,580,487
Number of Sequences: 539616
Number of extensions: 1835821
Number of successful extensions: 3537
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3532
Number of HSP's gapped (non-prelim): 10
length of query: 143
length of database: 191,569,459
effective HSP length: 106
effective length of query: 37
effective length of database: 134,370,163
effective search space: 4971696031
effective search space used: 4971696031
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)