Query psy17574
Match_columns 143
No_of_seqs 28 out of 30
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 17:02:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17574.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17574hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3755|consensus 100.0 3.1E-58 6.7E-63 419.6 9.7 139 2-143 71-213 (769)
2 PF11470 TUG-UBL1: GLUT4 regul 87.4 0.86 1.9E-05 31.4 3.4 38 38-81 12-49 (65)
3 PF07499 RuvA_C: RuvA, C-termi 77.0 0.98 2.1E-05 28.6 0.5 36 49-97 6-41 (47)
4 PRK14604 ruvA Holliday junctio 65.0 3.6 7.8E-05 33.4 1.3 23 45-68 149-171 (195)
5 cd01768 RA RA (Ras-associating 47.2 44 0.00094 22.5 4.2 36 35-72 15-50 (87)
6 PRK14603 ruvA Holliday junctio 46.3 11 0.00023 30.6 1.2 42 43-97 150-191 (197)
7 smart00314 RA Ras association 46.2 47 0.001 22.5 4.2 37 34-72 17-53 (90)
8 cd01611 GABARAP Ubiquitin doma 45.4 1.1E+02 0.0023 22.9 6.4 70 3-96 23-92 (112)
9 PRK13901 ruvA Holliday junctio 44.7 10 0.00022 31.2 0.8 25 45-70 144-168 (196)
10 COG3323 Uncharacterized protei 44.0 80 0.0017 24.3 5.5 70 46-132 17-92 (109)
11 PF11372 DUF3173: Domain of un 43.5 3.7 7.9E-05 28.3 -1.6 45 52-96 8-56 (59)
12 PRK14601 ruvA Holliday junctio 42.9 11 0.00024 30.4 0.8 25 44-69 141-165 (183)
13 PRK14600 ruvA Holliday junctio 42.8 11 0.00025 30.3 0.8 37 45-97 145-181 (186)
14 PF14732 UAE_UbL: Ubiquitin/SU 42.4 12 0.00026 26.6 0.8 64 40-109 6-80 (87)
15 cd01785 PDZ_GEF_RA Ubiquitin-l 41.8 57 0.0012 24.2 4.3 43 32-74 12-62 (85)
16 PRK13835 conjugal transfer pro 39.7 28 0.0006 27.8 2.5 51 34-90 59-110 (145)
17 PRK14606 ruvA Holliday junctio 39.3 14 0.0003 29.8 0.8 23 44-67 142-164 (188)
18 PF12436 USP7_ICP0_bdg: ICP0-b 39.1 19 0.00042 29.7 1.7 45 30-74 82-126 (249)
19 COG1715 Mrr Restriction endonu 37.9 29 0.00062 30.9 2.6 23 37-59 162-184 (308)
20 PRK14602 ruvA Holliday junctio 37.3 18 0.00038 29.4 1.2 24 43-67 153-176 (203)
21 PF00788 RA: Ras association ( 36.8 55 0.0012 21.6 3.3 26 33-58 17-42 (93)
22 KOG3349|consensus 35.8 82 0.0018 26.0 4.7 67 35-121 6-80 (170)
23 cd01612 APG12_C Ubiquitin-like 34.1 1E+02 0.0022 22.0 4.5 55 30-96 14-68 (87)
24 PF03445 DUF294: Putative nucl 33.7 27 0.00059 26.2 1.6 27 43-74 88-114 (138)
25 PRK14605 ruvA Holliday junctio 32.2 21 0.00046 28.8 0.8 22 45-67 148-169 (194)
26 cd06207 CyPoR_like NADPH cytoc 31.9 84 0.0018 27.1 4.5 53 32-97 33-89 (382)
27 PF08823 PG_binding_2: Putativ 31.2 30 0.00066 24.2 1.4 16 45-60 17-32 (74)
28 COG5590 Uncharacterized conser 30.9 31 0.00067 29.5 1.6 23 38-60 39-61 (229)
29 KOG3315|consensus 30.8 37 0.00081 28.3 2.1 42 23-64 105-165 (191)
30 PRK08367 porA pyruvate ferredo 30.7 38 0.00083 30.1 2.2 49 32-87 260-310 (394)
31 KOG0534|consensus 30.1 86 0.0019 27.2 4.2 55 5-62 217-282 (286)
32 smart00143 PI3K_p85B PI3-kinas 29.9 62 0.0014 23.2 2.8 22 102-127 2-23 (78)
33 PTZ00380 microtubule-associate 29.0 2.7E+02 0.0059 21.5 6.5 52 32-96 40-91 (121)
34 TIGR00084 ruvA Holliday juncti 28.5 25 0.00054 28.3 0.7 39 45-97 147-185 (191)
35 cd06410 PB1_UP2 Uncharacterize 27.1 1.8E+02 0.0039 21.2 4.9 62 36-108 26-96 (97)
36 COG0632 RuvA Holliday junction 27.0 29 0.00062 28.7 0.8 39 47-97 155-195 (201)
37 PF11834 DUF3354: Domain of un 26.9 1.1E+02 0.0025 21.2 3.7 36 32-69 17-52 (69)
38 cd01760 RBD Ubiquitin-like dom 26.9 70 0.0015 22.2 2.6 46 35-83 12-58 (72)
39 cd04614 CBS_pair_1 The CBS dom 25.8 1.8E+02 0.004 19.2 4.5 61 35-97 2-66 (96)
40 COG5128 Transport protein part 25.7 58 0.0013 27.4 2.3 39 27-65 122-179 (208)
41 cd01783 DAGK_delta_RA Ubiquiti 25.6 75 0.0016 23.8 2.7 30 33-62 15-46 (97)
42 CHL00193 ycf35 Ycf35; Provisio 25.1 45 0.00097 25.7 1.5 27 36-62 4-30 (128)
43 COG3414 SgaB Phosphotransferas 24.6 37 0.00081 24.7 0.9 76 42-127 15-91 (93)
44 cd01781 AF6_RA_repeat2 Ubiquit 23.9 1.8E+02 0.0039 21.8 4.5 35 37-72 20-54 (100)
45 PF04663 Phenol_monoox: Phenol 23.7 66 0.0014 22.7 2.0 26 37-62 30-56 (67)
46 PF01936 NYN: NYN domain; Int 22.2 82 0.0018 22.2 2.3 26 34-60 97-122 (146)
47 PF07929 PRiA4_ORF3: Plasmid p 22.0 1.1E+02 0.0023 23.6 3.0 60 36-97 21-88 (179)
48 PRK08366 vorA 2-ketoisovalerat 20.9 94 0.002 27.7 2.9 82 32-121 258-365 (390)
49 PF14814 UB2H: Bifunctional tr 20.5 1E+02 0.0022 21.5 2.4 31 46-76 9-39 (85)
50 PF08817 YukD: WXG100 protein 20.5 1.8E+02 0.0038 19.6 3.6 24 37-60 17-40 (79)
No 1
>KOG3755|consensus
Probab=100.00 E-value=3.1e-58 Score=419.58 Aligned_cols=139 Identities=39% Similarity=0.675 Sum_probs=134.6
Q ss_pred CCccCeEEEEeeecCcccccccccccccceeeeeEEEecCCCchhhhHHHHHHHcCCCccccccceeeEEeccccccccc
Q psy17574 2 GKSLPVHCVVEAVYSVHHWKSAKNSRKAILETDTYVITPTNTNFQDLVPVALQRLGYSKENFYSAKGYVGIKNWKPISIS 81 (143)
Q Consensus 2 ~~~lPV~CVVE~~~~~~~~~~~~~~~~~~~e~dsyvIVp~~t~f~qLV~tAL~~LGYS~~~A~~AkG~I~V~nWkPLp~~ 81 (143)
++|||||||||++++.++.+ |+.++++|||+||||+++|+|+|||||||++|||||++|++|+|+|+|||||||||+
T Consensus 71 ~~mlPv~cVVE~l~~sl~~d---cre~~~metd~yviVa~~t~~nqlVeTaL~aLGyShs~A~~ArGliqv~~WkPlPl~ 147 (769)
T KOG3755|consen 71 GKMLPVFCVVETLRSSLEYD---CREEGHMETDEYVIVAKDTLFNQLVETALLALGYSHSSAAQARGLIQVGNWKPLPLS 147 (769)
T ss_pred CccceeEeehhhhccceeee---ccCccccccceEEEEeccchHHHHHHHHHHHhccchhhhhhhcceEEecCcCccCHH
Confidence 68999999999999999999 888899999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcCcHHHHhhhhheeeEEEEEEeccCCc----chHHhHHHHHHHHHhhcchhhhccCCCCC
Q psy17574 82 KISENPATTVGDILGELTTVATLRIKIFRTRPC----ILAEMKDKLLRLLLVQSQTQIIASGCPLD 143 (143)
Q Consensus 82 ~Itd~p~~TVgd~L~el~~vvTLrI~l~r~~~~----~~~eik~klLk~Ll~qs~~~l~~~gcPLd 143 (143)
||||||++||+||||||||||||||+++|.+.+ ++.|+||||||+|+++++++++++|||||
T Consensus 148 qITDnpd~tVadm~~dv~svVtLkI~l~~~~~s~~~~~~~e~k~klLK~lv~~~~~vl~a~~cpl~ 213 (769)
T KOG3755|consen 148 QITDNPDATVADMLQDVYSVVTLKIQLKSCTKSEDLPCIHETKRKLLKALVKKMNQVLLAKECPLS 213 (769)
T ss_pred HhccCccchHHHHHHhhhhheEEEEEeecCCccccccchHHHHHHHHHHHHHhchhhhhccCCcch
Confidence 999999999999999999999999999998775 56699999999999999999999999996
No 2
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=87.41 E-value=0.86 Score=31.37 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=27.8
Q ss_pred EecCCCchhhhHHHHHHHcCCCccccccceeeEEeccccccccc
Q psy17574 38 ITPTNTNFQDLVPVALQRLGYSKENFYSAKGYVGIKNWKPISIS 81 (143)
Q Consensus 38 IVp~~t~f~qLV~tAL~~LGYS~~~A~~AkG~I~V~nWkPLp~~ 81 (143)
=|..++.++|+++.|+.++|++.+ ++.++=++ |++.++
T Consensus 12 kvtp~~~l~~VL~eac~k~~l~~~-----~~~L~h~~-k~ldls 49 (65)
T PF11470_consen 12 KVTPNTTLNQVLEEACKKFGLDPS-----SYDLKHNN-KPLDLS 49 (65)
T ss_dssp ---TTSBHHHHHHHHHHHTT--GG-----G-EEEETT-EEESSS
T ss_pred EECCCCCHHHHHHHHHHHcCCCcc-----ceEEEECC-EEeccc
Confidence 367889999999999999999986 77777777 888765
No 3
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=77.04 E-value=0.98 Score=28.61 Aligned_cols=36 Identities=33% Similarity=0.458 Sum_probs=24.1
Q ss_pred HHHHHHHcCCCccccccceeeEEeccccccccccccCCCcCcHHHHhhh
Q psy17574 49 VPVALQRLGYSKENFYSAKGYVGIKNWKPISISKISENPATTVGDILGE 97 (143)
Q Consensus 49 V~tAL~~LGYS~~~A~~AkG~I~V~nWkPLp~~~Itd~p~~TVgd~L~e 97 (143)
+-.||..|||+...+..|-- .+..+|..++++++..
T Consensus 6 ~~~AL~~LGy~~~e~~~av~-------------~~~~~~~~~~e~~ik~ 41 (47)
T PF07499_consen 6 ALEALISLGYSKAEAQKAVS-------------KLLEKPGMDVEELIKQ 41 (47)
T ss_dssp HHHHHHHTTS-HHHHHHHHH-------------HHHHSTTS-HHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHH-------------HhhcCCCCCHHHHHHH
Confidence 45689999999988777633 2333677788888764
No 4
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=64.99 E-value=3.6 Score=33.37 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=18.0
Q ss_pred hhhhHHHHHHHcCCCcccccccee
Q psy17574 45 FQDLVPVALQRLGYSKENFYSAKG 68 (143)
Q Consensus 45 f~qLV~tAL~~LGYS~~~A~~AkG 68 (143)
+.|.+ .||..|||+...|..|=.
T Consensus 149 ~~e~~-~aL~~LGy~~~ea~~ai~ 171 (195)
T PRK14604 149 DRELS-EILISLGYSAAEAAAAIA 171 (195)
T ss_pred HHHHH-HHHHHcCCCHHHHHHHHH
Confidence 56655 899999999988877753
No 5
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=47.21 E-value=44 Score=22.48 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=27.6
Q ss_pred eEEEecCCCchhhhHHHHHHHcCCCccccccceeeEEe
Q psy17574 35 TYVITPTNTNFQDLVPVALQRLGYSKENFYSAKGYVGI 72 (143)
Q Consensus 35 syvIVp~~t~f~qLV~tAL~~LGYS~~~A~~AkG~I~V 72 (143)
--+.|++++.-.|+++.||.+.|... ..+.-..+++
T Consensus 15 kti~V~~~~t~~~Vi~~~l~k~~l~~--~~~~y~L~ev 50 (87)
T cd01768 15 KTLRVSKDTTAQDVIQQLLKKFGLDD--DPEDYALVEV 50 (87)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCcC--CcccEEEEEE
Confidence 45789999999999999999999986 2334444443
No 6
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=46.25 E-value=11 Score=30.62 Aligned_cols=42 Identities=24% Similarity=0.376 Sum_probs=28.8
Q ss_pred CchhhhHHHHHHHcCCCccccccceeeEEeccccccccccccCCCcCcHHHHhhh
Q psy17574 43 TNFQDLVPVALQRLGYSKENFYSAKGYVGIKNWKPISISKISENPATTVGDILGE 97 (143)
Q Consensus 43 t~f~qLV~tAL~~LGYS~~~A~~AkG~I~V~nWkPLp~~~Itd~p~~TVgd~L~e 97 (143)
..+.|.+ .||..|||+...|..|=..+. ..+|+.++++++.+
T Consensus 150 ~~~~ea~-~AL~~LGy~~~ea~~al~~i~------------~~~~~~~~e~lir~ 191 (197)
T PRK14603 150 TAAEDAV-LALLALGFREAQVRSVVAELL------------AQNPEASAQTLIRK 191 (197)
T ss_pred ccHHHHH-HHHHHcCCCHHHHHHHHHHHH------------hcCCCCCHHHHHHH
Confidence 3567766 899999999988877754321 12356678887765
No 7
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=46.22 E-value=47 Score=22.52 Aligned_cols=37 Identities=11% Similarity=0.155 Sum_probs=28.7
Q ss_pred eeEEEecCCCchhhhHHHHHHHcCCCccccccceeeEEe
Q psy17574 34 DTYVITPTNTNFQDLVPVALQRLGYSKENFYSAKGYVGI 72 (143)
Q Consensus 34 dsyvIVp~~t~f~qLV~tAL~~LGYS~~~A~~AkG~I~V 72 (143)
---+.|+.++.-+|+++.||.+.|...+ .+.-.++++
T Consensus 17 ~kti~v~~~tTa~~Vi~~~l~k~~l~~~--~~~y~L~e~ 53 (90)
T smart00314 17 YKTLRVSSRTTARDVIQQLLEKFHLTDD--PEEYVLVEV 53 (90)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCC--cccEEEEEE
Confidence 3457789999999999999999999875 444444444
No 8
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=45.44 E-value=1.1e+02 Score=22.93 Aligned_cols=70 Identities=17% Similarity=0.353 Sum_probs=46.6
Q ss_pred CccCeEEEEeeecCcccccccccccccceeeeeEEEecCCCchhhhHHHHHHHcCCCccccccceeeEEecccccccccc
Q psy17574 3 KSLPVHCVVEAVYSVHHWKSAKNSRKAILETDTYVITPTNTNFQDLVPVALQRLGYSKENFYSAKGYVGIKNWKPISISK 82 (143)
Q Consensus 3 ~~lPV~CVVE~~~~~~~~~~~~~~~~~~~e~dsyvIVp~~t~f~qLV~tAL~~LGYS~~~A~~AkG~I~V~nWkPLp~~~ 82 (143)
.++|| |||..... .-+.....-| +||++..+.|++...=.+|.-+.+.|- -+-|+| . +|
T Consensus 23 ~~iPV--IvE~~~~~---------~~p~l~k~Kf-lVp~~~tv~~f~~~irk~l~l~~~~sl----fl~Vn~-~-~p--- 81 (112)
T cd01611 23 DRIPV--IVERYPKS---------DLPDLDKKKY-LVPSDLTVGQFVYIIRKRIQLRPEKAL----FLFVNN-S-LP--- 81 (112)
T ss_pred CceEE--EEEEcCCC---------CcccccCceE-EecCCCCHHHHHHHHHHHhCCCccceE----EEEECC-c-cC---
Confidence 35665 77875532 2344556677 699999999999999888876654332 256666 3 33
Q ss_pred ccCCCcCcHHHHhh
Q psy17574 83 ISENPATTVGDILG 96 (143)
Q Consensus 83 Itd~p~~TVgd~L~ 96 (143)
.|+.|+||+-.
T Consensus 82 ---~~~~~~~~lY~ 92 (112)
T cd01611 82 ---PTSATMSQLYE 92 (112)
T ss_pred ---CchhHHHHHHH
Confidence 36777777654
No 9
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=44.65 E-value=10 Score=31.19 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=19.5
Q ss_pred hhhhHHHHHHHcCCCccccccceeeE
Q psy17574 45 FQDLVPVALQRLGYSKENFYSAKGYV 70 (143)
Q Consensus 45 f~qLV~tAL~~LGYS~~~A~~AkG~I 70 (143)
+.|.+ .||..|||+...|..|-..+
T Consensus 144 ~~ea~-~AL~~LGy~~~ea~~al~~v 168 (196)
T PRK13901 144 FKELE-QSIVNMGFDRKLVNSAIKEI 168 (196)
T ss_pred HHHHH-HHHHHcCCCHHHHHHHHHHH
Confidence 56655 89999999998887776544
No 10
>COG3323 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.05 E-value=80 Score=24.27 Aligned_cols=70 Identities=26% Similarity=0.485 Sum_probs=47.2
Q ss_pred hhhHHHHHHHcC------CCccccccceeeEEeccccccccccccCCCcCcHHHHhhhhheeeEEEEEEeccCCcchHHh
Q psy17574 46 QDLVPVALQRLG------YSKENFYSAKGYVGIKNWKPISISKISENPATTVGDILGELTTVATLRIKIFRTRPCILAEM 119 (143)
Q Consensus 46 ~qLV~tAL~~LG------YS~~~A~~AkG~I~V~nWkPLp~~~Itd~p~~TVgd~L~el~~vvTLrI~l~r~~~~~~~ei 119 (143)
-+=|+.||.+.| |+| -+.++ ...|.|||+ |+-.-+.|++ |.+.++.-+||..-- =.+.
T Consensus 17 ~e~vr~aL~~aGag~iG~Y~~-C~~~~---~g~G~frP~------egAnP~iGev-gk~e~v~E~kiE~v~-----~~~~ 80 (109)
T COG3323 17 VEQVRDALFEAGAGHIGNYDH-CTFSS---EGTGQFRPL------EGANPFIGEV-GKLEFVAEVKIEFVV-----PAEL 80 (109)
T ss_pred HHHHHHHHHhcCCcceeccce-EEEEe---eeeEEEeec------CCCCCccccc-ceEEeeeeeEEEEEc-----CHHH
Confidence 355788888887 776 44444 457999998 5566677775 889999999997753 2345
Q ss_pred HHHHHHHHHhhcc
Q psy17574 120 KDKLLRLLLVQSQ 132 (143)
Q Consensus 120 k~klLk~Ll~qs~ 132 (143)
+++++++ |++.|
T Consensus 81 ~~~v~~~-ik~aH 92 (109)
T COG3323 81 RAAVLSA-IKKAH 92 (109)
T ss_pred HHHHHHH-HHHhC
Confidence 5555554 44433
No 11
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=43.46 E-value=3.7 Score=28.31 Aligned_cols=45 Identities=29% Similarity=0.430 Sum_probs=24.9
Q ss_pred HHHHcCCCccccc----cceeeEEeccccccccccccCCCcCcHHHHhh
Q psy17574 52 ALQRLGYSKENFY----SAKGYVGIKNWKPISISKISENPATTVGDILG 96 (143)
Q Consensus 52 AL~~LGYS~~~A~----~AkG~I~V~nWkPLp~~~Itd~p~~TVgd~L~ 96 (143)
-|.+||||...|. +||-...=+-..+-.=..+--.|...|+++||
T Consensus 8 dLi~lGf~~~tA~~IIrqAK~~lV~~G~~~Y~nkRlg~VP~~~VEeiLG 56 (59)
T PF11372_consen 8 DLIELGFSESTARDIIRQAKALLVQKGFSFYNNKRLGRVPASAVEEILG 56 (59)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHcCCCcccCCccCcccHHHHHHHHC
Confidence 4677899985543 23322222223333334556667777777776
No 12
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=42.93 E-value=11 Score=30.38 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=18.7
Q ss_pred chhhhHHHHHHHcCCCccccccceee
Q psy17574 44 NFQDLVPVALQRLGYSKENFYSAKGY 69 (143)
Q Consensus 44 ~f~qLV~tAL~~LGYS~~~A~~AkG~ 69 (143)
.+.|.+ .||..|||+...|..|-..
T Consensus 141 ~~~ea~-~AL~~LGy~~~ea~~a~~~ 165 (183)
T PRK14601 141 DKSEAL-AALLTLGFKQEKIIKVLAS 165 (183)
T ss_pred cHHHHH-HHHHHcCCCHHHHHHHHHh
Confidence 356654 8999999999888777543
No 13
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=42.78 E-value=11 Score=30.33 Aligned_cols=37 Identities=30% Similarity=0.478 Sum_probs=26.4
Q ss_pred hhhhHHHHHHHcCCCccccccceeeEEeccccccccccccCCCcCcHHHHhhh
Q psy17574 45 FQDLVPVALQRLGYSKENFYSAKGYVGIKNWKPISISKISENPATTVGDILGE 97 (143)
Q Consensus 45 f~qLV~tAL~~LGYS~~~A~~AkG~I~V~nWkPLp~~~Itd~p~~TVgd~L~e 97 (143)
+.|.+ .||..|||+...|..|-..+ .++.++++++.+
T Consensus 145 ~~e~~-~aL~~LGy~~~ea~~al~~v---------------~~~~~~eelir~ 181 (186)
T PRK14600 145 NDDAL-AALISLGYEKTKAFNAIQKI---------------KPNLSTQDIIRK 181 (186)
T ss_pred HHHHH-HHHHHcCCCHHHHHHHHHHh---------------hcCCCHHHHHHH
Confidence 56655 79999999998887775433 136678877764
No 14
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=42.39 E-value=12 Score=26.60 Aligned_cols=64 Identities=25% Similarity=0.257 Sum_probs=39.8
Q ss_pred cCCCchhhhHHHHHH-HcCCCc-cccccceeeEEe--cc-------ccccccccccCCCcCcHHHHhhhhheeeEEEEEE
Q psy17574 40 PTNTNFQDLVPVALQ-RLGYSK-ENFYSAKGYVGI--KN-------WKPISISKISENPATTVGDILGELTTVATLRIKI 108 (143)
Q Consensus 40 p~~t~f~qLV~tAL~-~LGYS~-~~A~~AkG~I~V--~n-------WkPLp~~~Itd~p~~TVgd~L~el~~vvTLrI~l 108 (143)
...+.+++||+.+|. +|||.. +... .|.|.. +- =|+|.==-|.++-..||-|-.+| ++++|.|
T Consensus 6 ~~~~TL~~lv~~Vlk~~Lg~~~P~v~~--~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~D~~q~----~~~~i~i 79 (87)
T PF14732_consen 6 TKKMTLGDLVEKVLKKKLGMNEPDVSV--GGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVDDFDQD----FNLEINI 79 (87)
T ss_dssp TTT-BHHHHHHHCCCCCS--SSEEEEE--S-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEEETTTT----EEEEEEE
T ss_pred chhCcHHHHHHHHHHhccCCCCCEEEe--CCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEEEcCCC----cEEEEEE
Confidence 456789999999998 999997 5555 444443 21 23333336778888888888888 7788877
Q ss_pred e
Q psy17574 109 F 109 (143)
Q Consensus 109 ~ 109 (143)
.
T Consensus 80 ~ 80 (87)
T PF14732_consen 80 K 80 (87)
T ss_dssp E
T ss_pred E
Confidence 4
No 15
>cd01785 PDZ_GEF_RA Ubiquitin-like domain of PDZ_GEF_RA. PDZ_GEF_RA PDZ-GEF is a guanine nucleotide exchange factor (GEF) characterised by the presence of a PSD-95/DlgA/ZO-1 (PDZ) domain, a Ras-association (RA) domain and a region related to a cyclic nucleotide binding domain (RCBD). RA-GEF exchanges nucleotides of both Rap1 and Rap2, but is also thought to mediate cAMP-induced Ras activation. The RA domain interacts with Rap1 and also contributes to the membrane localization of RA-GEF. This domain may function in a positive feedback loop.
Probab=41.76 E-value=57 Score=24.17 Aligned_cols=43 Identities=21% Similarity=0.345 Sum_probs=33.7
Q ss_pred eeeeEEEecCCCchhhhHHHHHHHcCCCccc--------cccceeeEEecc
Q psy17574 32 ETDTYVITPTNTNFQDLVPVALQRLGYSKEN--------FYSAKGYVGIKN 74 (143)
Q Consensus 32 e~dsyvIVp~~t~f~qLV~tAL~~LGYS~~~--------A~~AkG~I~V~n 74 (143)
-+-.|.+|.++|.-.+.|.-||+..|.+..+ .+...|.|+=++
T Consensus 12 Qt~kyili~K~Tta~evv~lal~eFgi~~~s~~~sLceVtV~~~g~IKQrR 62 (85)
T cd01785 12 QTCKYLLIYKETTAHEVVMLALQEFGITAPSSNFSLCEVSVTPGGVIKQRR 62 (85)
T ss_pred cceeEEEEeccccHHHHHHHHHHHhCCCCCccceEEEEEEecCCceeeecc
Confidence 4557999999999999999999999988643 445566665543
No 16
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=39.69 E-value=28 Score=27.83 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=39.1
Q ss_pred eeEEEecCCCchhhhHHHHHHHcCCCc-cccccceeeEEeccccccccccccCCCcCc
Q psy17574 34 DTYVITPTNTNFQDLVPVALQRLGYSK-ENFYSAKGYVGIKNWKPISISKISENPATT 90 (143)
Q Consensus 34 dsyvIVp~~t~f~qLV~tAL~~LGYS~-~~A~~AkG~I~V~nWkPLp~~~Itd~p~~T 90 (143)
-.|.|-..+..|-+..+.+|.+-||-= +....++|. |++||.|+-|..+-+
T Consensus 59 tt~~l~q~~d~Fg~aL~~aLr~~GYaVvtd~k~~~~~------~~v~L~Yvid~~~g~ 110 (145)
T PRK13835 59 TTIKLKKDTSPFGQALEAALKGWGYAVVTDQKTDKGP------KPVELAYVVDSFDGQ 110 (145)
T ss_pred eEEEEeecCcHHHHHHHHHHHhcCeEEeecccccccc------CccceEEEEecCCCc
Confidence 456666677899999999999999983 222224553 899999999988864
No 17
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=39.30 E-value=14 Score=29.83 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=18.2
Q ss_pred chhhhHHHHHHHcCCCccccccce
Q psy17574 44 NFQDLVPVALQRLGYSKENFYSAK 67 (143)
Q Consensus 44 ~f~qLV~tAL~~LGYS~~~A~~Ak 67 (143)
.+.|.+ .||..|||+...|..|=
T Consensus 142 ~~~e~~-~AL~~LGy~~~ea~~av 164 (188)
T PRK14606 142 IYHESL-EALVSLGYPEKQAREAV 164 (188)
T ss_pred cHHHHH-HHHHHcCCCHHHHHHHH
Confidence 467766 69999999998777664
No 18
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=39.07 E-value=19 Score=29.68 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=31.6
Q ss_pred ceeeeeEEEecCCCchhhhHHHHHHHcCCCccccccceeeEEecc
Q psy17574 30 ILETDTYVITPTNTNFQDLVPVALQRLGYSKENFYSAKGYVGIKN 74 (143)
Q Consensus 30 ~~e~dsyvIVp~~t~f~qLV~tAL~~LGYS~~~A~~AkG~I~V~n 74 (143)
...--..++|+++..+++|++....++|++.+..-.--.-|+-+.
T Consensus 82 ~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ 126 (249)
T PF12436_consen 82 TLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNM 126 (249)
T ss_dssp EEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTE
T ss_pred EEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccce
Confidence 466677889999999999999999999999876665555554433
No 19
>COG1715 Mrr Restriction endonuclease [Defense mechanisms]
Probab=37.94 E-value=29 Score=30.90 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=18.8
Q ss_pred EEecCCCchhhhHHHHHHHcCCC
Q psy17574 37 VITPTNTNFQDLVPVALQRLGYS 59 (143)
Q Consensus 37 vIVp~~t~f~qLV~tAL~~LGYS 59 (143)
...-....|-.||-.+|.|+||-
T Consensus 162 ~~~~sp~~Fe~lvvdvl~rmGYg 184 (308)
T COG1715 162 LRKLSPAFFEELVVDVLERMGYG 184 (308)
T ss_pred HHhcCHHHHHHHHHHHHHHhcCC
Confidence 33445568999999999999998
No 20
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=37.33 E-value=18 Score=29.45 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=18.1
Q ss_pred CchhhhHHHHHHHcCCCccccccce
Q psy17574 43 TNFQDLVPVALQRLGYSKENFYSAK 67 (143)
Q Consensus 43 t~f~qLV~tAL~~LGYS~~~A~~Ak 67 (143)
..+.|.+ .||..|||+...|..|=
T Consensus 153 ~~~~ea~-~AL~~LGy~~~ea~~av 176 (203)
T PRK14602 153 SVFRDAL-AGLANLGYGEEEARPVL 176 (203)
T ss_pred chHHHHH-HHHHHcCCCHHHHHHHH
Confidence 3467755 78999999997777664
No 21
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=36.77 E-value=55 Score=21.62 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=23.0
Q ss_pred eeeEEEecCCCchhhhHHHHHHHcCC
Q psy17574 33 TDTYVITPTNTNFQDLVPVALQRLGY 58 (143)
Q Consensus 33 ~dsyvIVp~~t~f~qLV~tAL~~LGY 58 (143)
.-.-+-|+.+|.=.|++++||.++|.
T Consensus 17 ~~k~i~v~~~tTa~evi~~~l~k~~l 42 (93)
T PF00788_consen 17 TYKTIKVSSSTTAREVIEMALEKFGL 42 (93)
T ss_dssp SEEEEEEETTSBHHHHHHHHHHHTTT
T ss_pred cEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 34567789999999999999999999
No 22
>KOG3349|consensus
Probab=35.84 E-value=82 Score=25.97 Aligned_cols=67 Identities=22% Similarity=0.453 Sum_probs=44.5
Q ss_pred eEEEecCCCchhhhHHHH--------HHHcCCCccccccceeeEEeccccccccccccCCCcCcHHHHhhhhheeeEEEE
Q psy17574 35 TYVITPTNTNFQDLVPVA--------LQRLGYSKENFYSAKGYVGIKNWKPISISKISENPATTVGDILGELTTVATLRI 106 (143)
Q Consensus 35 syvIVp~~t~f~qLV~tA--------L~~LGYS~~~A~~AkG~I~V~nWkPLp~~~Itd~p~~TVgd~L~el~~vvTLrI 106 (143)
=||=| ++|.|.+||.+| |++.||-+ =+||+||=++. .+.| ..+..-..-|.|
T Consensus 6 vFVTV-GtT~Fd~LI~~Vl~~~~~~~L~k~G~~k-------LiiQ~Grg~~~-----~~d~-------~~~~~k~~gl~i 65 (170)
T KOG3349|consen 6 VFVTV-GTTSFDDLISCVLSEEFLQELQKRGFTK-------LIIQIGRGQPF-----FGDP-------IDLIRKNGGLTI 65 (170)
T ss_pred EEEEe-ccccHHHHHHHHcCHHHHHHHHHcCccE-------EEEEecCCccC-----CCCH-------HHhhcccCCeEE
Confidence 35544 577799999876 67889987 47888887732 2211 122223456778
Q ss_pred EEeccCCcchHHhHH
Q psy17574 107 KIFRTRPCILAEMKD 121 (143)
Q Consensus 107 ~l~r~~~~~~~eik~ 121 (143)
--|+=+|+.-++|++
T Consensus 66 d~y~f~psl~e~I~~ 80 (170)
T KOG3349|consen 66 DGYDFSPSLTEDIRS 80 (170)
T ss_pred EEEecCccHHHHHhh
Confidence 888877887788875
No 23
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=34.08 E-value=1e+02 Score=22.04 Aligned_cols=55 Identities=20% Similarity=0.374 Sum_probs=38.3
Q ss_pred ceeeeeEEEecCCCchhhhHHHHHHHcCCCccccccceeeEEeccccccccccccCCCcCcHHHHhh
Q psy17574 30 ILETDTYVITPTNTNFQDLVPVALQRLGYSKENFYSAKGYVGIKNWKPISISKISENPATTVGDILG 96 (143)
Q Consensus 30 ~~e~dsyvIVp~~t~f~qLV~tAL~~LGYS~~~A~~AkG~I~V~nWkPLp~~~Itd~p~~TVgd~L~ 96 (143)
.....-|. ||++..|.|++...=.+|+-+.+.|.- +-|+| .+...|+.||||+-.
T Consensus 14 ~l~k~kfl-v~~~~tv~~~~~~lrk~L~l~~~~slf----lyvnn-------~f~p~~d~~~g~LY~ 68 (87)
T cd01612 14 ILKQKVFK-ISATQSFQAVIDFLRKRLKLKASDSLF----LYINN-------SFAPSPDENVGNLYR 68 (87)
T ss_pred cccccEEE-eCCCCCHHHHHHHHHHHhCCCccCeEE----EEECC-------ccCCCchhHHHHHHH
Confidence 34444554 999999999999999999977544332 44444 235568888888754
No 24
>PF03445 DUF294: Putative nucleotidyltransferase DUF294; InterPro: IPR005105 This domain is found associated with an N-terminal cyclic nucleotide-binding domain (IPR000595 from INTERPRO) and two CBS domains (IPR000644 from INTERPRO). This domain, normally represents the C-terminal region, is uncharacterised; however, it seems to be similar to the nucleotidyltransferase domain (IPR002934 from INTERPRO), conserving the DXD motif, which strongly suggests that proteins containing this domain are also nucleotidyltransferases.; GO: 0008773 [protein-PII] uridylyltransferase activity
Probab=33.72 E-value=27 Score=26.23 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=21.0
Q ss_pred CchhhhHHHHHHHcCCCccccccceeeEEecc
Q psy17574 43 TNFQDLVPVALQRLGYSKENFYSAKGYVGIKN 74 (143)
Q Consensus 43 t~f~qLV~tAL~~LGYS~~~A~~AkG~I~V~n 74 (143)
-.|.+-+-.+|.++||+. .+|-|+..|
T Consensus 88 ~~~a~~~~~~L~~~G~~~-----C~g~vmasn 114 (138)
T PF03445_consen 88 EAFAERLVDALDECGFPP-----CPGGVMASN 114 (138)
T ss_pred HHHHHHHHHHHHHcCCCC-----CCCCcCccC
Confidence 356777888999999998 567777665
No 25
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=32.20 E-value=21 Score=28.76 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=17.8
Q ss_pred hhhhHHHHHHHcCCCccccccce
Q psy17574 45 FQDLVPVALQRLGYSKENFYSAK 67 (143)
Q Consensus 45 f~qLV~tAL~~LGYS~~~A~~Ak 67 (143)
.+|++ .||..|||+...|..|-
T Consensus 148 ~~e~~-~aL~~LGy~~~~a~~ai 169 (194)
T PRK14605 148 NSDIL-ATLTALGYSSSEAAKAI 169 (194)
T ss_pred HHHHH-HHHHHcCCCHHHHHHHH
Confidence 46666 89999999998887764
No 26
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=31.94 E-value=84 Score=27.10 Aligned_cols=53 Identities=26% Similarity=0.377 Sum_probs=34.9
Q ss_pred eeeeEEEecCCCchhhhHHHHHHHcCCCccccccceeeEEe----ccccccccccccCCCcCcHHHHhhh
Q psy17574 32 ETDTYVITPTNTNFQDLVPVALQRLGYSKENFYSAKGYVGI----KNWKPISISKISENPATTVGDILGE 97 (143)
Q Consensus 32 e~dsyvIVp~~t~f~qLV~tAL~~LGYS~~~A~~AkG~I~V----~nWkPLp~~~Itd~p~~TVgd~L~e 97 (143)
--|...|.|.|. .+.|+..|.+||...+.-.. ++. ..|.|+| ...|+.++|..
T Consensus 33 ~GD~l~v~p~N~--~~~V~~~l~~l~l~~~~~~~----~~~~~~~~~~~~~~-------~~~t~~~ll~~ 89 (382)
T cd06207 33 TGDNLGIYPENS--DALVDEFLARLGLDGDDVVR----VEPNEQQRGKPPFP-------EPISVRQLLKK 89 (382)
T ss_pred CCCEEEEEcCCC--HHHHHHHHHHhCCCCCCeEE----EecccccccCCCCC-------CCccHHHHHHh
Confidence 446778888887 79999999999998643221 221 1233332 24799999865
No 27
>PF08823 PG_binding_2: Putative peptidoglycan binding domain; InterPro: IPR014927 This entry may be a peptidoglycan binding domain.
Probab=31.18 E-value=30 Score=24.18 Aligned_cols=16 Identities=50% Similarity=0.634 Sum_probs=12.4
Q ss_pred hhhhHHHHHHHcCCCc
Q psy17574 45 FQDLVPVALQRLGYSK 60 (143)
Q Consensus 45 f~qLV~tAL~~LGYS~ 60 (143)
.-+=|+.+|.+|||=.
T Consensus 17 ~~~evq~~L~~lGyy~ 32 (74)
T PF08823_consen 17 VAREVQEALKRLGYYK 32 (74)
T ss_pred HHHHHHHHHHHcCCcc
Confidence 3456899999999943
No 28
>COG5590 Uncharacterized conserved protein [Function unknown]
Probab=30.93 E-value=31 Score=29.55 Aligned_cols=23 Identities=43% Similarity=0.570 Sum_probs=20.3
Q ss_pred EecCCCchhhhHHHHHHHcCCCc
Q psy17574 38 ITPTNTNFQDLVPVALQRLGYSK 60 (143)
Q Consensus 38 IVp~~t~f~qLV~tAL~~LGYS~ 60 (143)
++|.+--=+.++..||.+||||.
T Consensus 39 lvP~~gwnn~li~eal~a~Gys~ 61 (229)
T COG5590 39 LVPFNGWNNRLIVEALEALGYSK 61 (229)
T ss_pred hccccccchhHHHHHHHhcCccc
Confidence 46777777899999999999998
No 29
>KOG3315|consensus
Probab=30.77 E-value=37 Score=28.34 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=33.7
Q ss_pred cccccccceeeeeEEEecCCCchhh-------------------hHHHHHHHcCCCccccc
Q psy17574 23 AKNSRKAILETDTYVITPTNTNFQD-------------------LVPVALQRLGYSKENFY 64 (143)
Q Consensus 23 ~~~~~~~~~e~dsyvIVp~~t~f~q-------------------LV~tAL~~LGYS~~~A~ 64 (143)
+.+-++.++..++|.||-++-+||+ +|+.+|..-||+....|
T Consensus 105 ad~LEka~d~~~tYmiid~~pl~n~fISVPke~~~lnc~~fvaGIiea~L~~agfpckVTA 165 (191)
T KOG3315|consen 105 ADKLEKANDDDRTYMIIDKEPLVNTFISVPKENGTLNCAAFVAGIIEAVLDNAGFPCKVTA 165 (191)
T ss_pred HHHHHhcccccceEEEEcCcchhhhceecccccCcccHHHHHHHHHHHHHHhCCCCCceee
Confidence 3345677889999999999988886 46999999999975443
No 30
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=30.66 E-value=38 Score=30.11 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=39.0
Q ss_pred eeeeEEEecCCCchhhhHHHH--HHHcCCCccccccceeeEEeccccccccccccCCC
Q psy17574 32 ETDTYVITPTNTNFQDLVPVA--LQRLGYSKENFYSAKGYVGIKNWKPISISKISENP 87 (143)
Q Consensus 32 e~dsyvIVp~~t~f~qLV~tA--L~~LGYS~~~A~~AkG~I~V~nWkPLp~~~Itd~p 87 (143)
|.++|+||--......+=+++ |.+.|+. =|.|+++-+.|+|-+.|.+.+
T Consensus 260 eDAe~viV~~GS~~~~~keav~~LR~~G~k-------VGllri~~~rPFP~~~i~~~l 310 (394)
T PRK08367 260 EDAEIIFVTMGSLAGTLKEFVDKLREEGYK-------VGAAKLTVYRPFPVEEIRALA 310 (394)
T ss_pred CCCCEEEEEeCccHHHHHHHHHHHHhcCCc-------ceeEEEeEecCCCHHHHHHHH
Confidence 458899999998887766665 6678874 499999999999998775543
No 31
>KOG0534|consensus
Probab=30.15 E-value=86 Score=27.24 Aligned_cols=55 Identities=18% Similarity=0.267 Sum_probs=37.6
Q ss_pred cCeEEEEeeecCcccccccc----------cccccceeeeeEEEecCCCchhhh-HHHHHHHcCCCccc
Q psy17574 5 LPVHCVVEAVYSVHHWKSAK----------NSRKAILETDTYVITPTNTNFQDL-VPVALQRLGYSKEN 62 (143)
Q Consensus 5 lPV~CVVE~~~~~~~~~~~~----------~~~~~~~e~dsyvIVp~~t~f~qL-V~tAL~~LGYS~~~ 62 (143)
|-++++|..-. ..|+... +-..+..+ +..|+|-+--+|.+. +..+|.+|||+.+.
T Consensus 217 f~~~y~v~~~~--~~w~~~~g~It~~~i~~~l~~~~~~-~~~~liCGPp~m~~~~~~~~le~Lg~~~~~ 282 (286)
T KOG0534|consen 217 FKVWYVVDQPP--EIWDGSVGFITKDLIKEHLPPPKEG-ETLVLICGPPPMINGAAQGNLEKLGYNEDQ 282 (286)
T ss_pred EEEEEEEcCCc--ccccCccCccCHHHHHhhCCCCCCC-CeEEEEECCHHHHhHHHHHHHHhcCCChHh
Confidence 34777777655 3455110 11223333 799999999999995 99999999999543
No 32
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=29.91 E-value=62 Score=23.24 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=16.9
Q ss_pred eEEEEEEeccCCcchHHhHHHHHHHH
Q psy17574 102 ATLRIKIFRTRPCILAEMKDKLLRLL 127 (143)
Q Consensus 102 vTLrI~l~r~~~~~~~eik~klLk~L 127 (143)
++|++ ++...|+|||+.+.+.+
T Consensus 2 i~l~v----~~~aTl~~IK~~lw~~A 23 (78)
T smart00143 2 VTLRV----LREATLSTIKHELFKQA 23 (78)
T ss_pred eeEEc----cccccHHHHHHHHHHHH
Confidence 45555 56778999999998865
No 33
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=28.97 E-value=2.7e+02 Score=21.49 Aligned_cols=52 Identities=23% Similarity=0.355 Sum_probs=38.2
Q ss_pred eeeeEEEecCCCchhhhHHHHHHHcCCCccccccceeeEEeccccccccccccCCCcCcHHHHhh
Q psy17574 32 ETDTYVITPTNTNFQDLVPVALQRLGYSKENFYSAKGYVGIKNWKPISISKISENPATTVGDILG 96 (143)
Q Consensus 32 e~dsyvIVp~~t~f~qLV~tAL~~LGYS~~~A~~AkG~I~V~nWkPLp~~~Itd~p~~TVgd~L~ 96 (143)
+..-|-+||.++...|++...=.||+-+.+.. -+-|+| -+|- ..+|+||+-.
T Consensus 40 dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k~-----flfVnn--~lp~------~s~~mg~lYe 91 (121)
T PTZ00380 40 SKVHFLALPRDATVAELEAAVRQALGTSAKKV-----TLAIEG--STPA------VTATVGDIAD 91 (121)
T ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCChhHE-----EEEECC--ccCC------ccchHHHHHH
Confidence 34458899999999999999999999887652 466777 3332 4466666643
No 34
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=28.55 E-value=25 Score=28.26 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=25.7
Q ss_pred hhhhHHHHHHHcCCCccccccceeeEEeccccccccccccCCCcCcHHHHhhh
Q psy17574 45 FQDLVPVALQRLGYSKENFYSAKGYVGIKNWKPISISKISENPATTVGDILGE 97 (143)
Q Consensus 45 f~qLV~tAL~~LGYS~~~A~~AkG~I~V~nWkPLp~~~Itd~p~~TVgd~L~e 97 (143)
..+ +..||..|||+...|..|-..+ ...|+.++++++..
T Consensus 147 ~~e-~~~aL~~LGy~~~e~~~ai~~~-------------~~~~~~~~~~li~~ 185 (191)
T TIGR00084 147 RDE-LFEALVSLGYKPQEIQQALKKI-------------KNKPDFAIEQDIEE 185 (191)
T ss_pred HHH-HHHHHHHcCCCHHHHHHHHHHH-------------hhcCCCCHHHHHHH
Confidence 344 5589999999998887765433 11246677776643
No 35
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=27.10 E-value=1.8e+02 Score=21.22 Aligned_cols=62 Identities=18% Similarity=0.329 Sum_probs=42.1
Q ss_pred EEEecCCCchhhhHHHHHHHcCCCccccccceeeEEeccc----cccc-cccccCCCcCcHHHHhhhhh----eeeEEEE
Q psy17574 36 YVITPTNTNFQDLVPVALQRLGYSKENFYSAKGYVGIKNW----KPIS-ISKISENPATTVGDILGELT----TVATLRI 106 (143)
Q Consensus 36 yvIVp~~t~f~qLV~tAL~~LGYS~~~A~~AkG~I~V~nW----kPLp-~~~Itd~p~~TVgd~L~el~----~vvTLrI 106 (143)
-+-|+.++.|.+|+......+|.+.+ +.+ .| +++. +-.+++ +..+..|+.|-. .-+++||
T Consensus 26 ~i~V~r~~s~~el~~kl~~~~~~~~~--------~~l-ky~Lp~edld~Lisv~~--DeDl~~M~~e~~~~~~~~~rirv 94 (97)
T cd06410 26 IVSVDRSISFKELVSKLSELFGAGVV--------VTL-KYQLPDEDLDALISVSN--DEDLKNMMEEYDRLSGGSARLRV 94 (97)
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCCCc--------eEE-EEEcCCCCcceeEEecC--cHHHHHHHHhhccccCCCceEEE
Confidence 46789999999999999999998863 333 33 2333 333443 446788888877 5556666
Q ss_pred EE
Q psy17574 107 KI 108 (143)
Q Consensus 107 ~l 108 (143)
-+
T Consensus 95 fl 96 (97)
T cd06410 95 FL 96 (97)
T ss_pred EE
Confidence 54
No 36
>COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair]
Probab=27.02 E-value=29 Score=28.67 Aligned_cols=39 Identities=28% Similarity=0.396 Sum_probs=24.9
Q ss_pred hhHH--HHHHHcCCCccccccceeeEEeccccccccccccCCCcCcHHHHhhh
Q psy17574 47 DLVP--VALQRLGYSKENFYSAKGYVGIKNWKPISISKISENPATTVGDILGE 97 (143)
Q Consensus 47 qLV~--tAL~~LGYS~~~A~~AkG~I~V~nWkPLp~~~Itd~p~~TVgd~L~e 97 (143)
...+ .||..|||+...+..|-=. ++.+ .|++++.+++.+
T Consensus 155 ~~~~~v~AL~~LGy~~~e~~~av~~--------v~~~----~~~~~~~~~Ik~ 195 (201)
T COG0632 155 ALEEAVEALVALGYKEKEIKKAVKK--------VLKE----NPDADVEELIKE 195 (201)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHH--------HHhc----CCCCCHHHHHHH
Confidence 3445 4999999998777766211 1111 577777777654
No 37
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=26.91 E-value=1.1e+02 Score=21.21 Aligned_cols=36 Identities=17% Similarity=0.465 Sum_probs=27.5
Q ss_pred eeeeEEEecCCCchhhhHHHHHHHcCCCccccccceee
Q psy17574 32 ETDTYVITPTNTNFQDLVPVALQRLGYSKENFYSAKGY 69 (143)
Q Consensus 32 e~dsyvIVp~~t~f~qLV~tAL~~LGYS~~~A~~AkG~ 69 (143)
...--+++|. .|.+|++.|=.++|.+.....++.|.
T Consensus 17 ~~GKvi~lP~--SleeLl~ia~~kfg~~~~~v~~~dga 52 (69)
T PF11834_consen 17 RAGKVIWLPD--SLEELLKIASEKFGFSATKVLNEDGA 52 (69)
T ss_pred cCCEEEEcCc--cHHHHHHHHHHHhCCCceEEEcCCCC
Confidence 3355567774 78999999999999987666666663
No 38
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=26.91 E-value=70 Score=22.24 Aligned_cols=46 Identities=20% Similarity=0.185 Sum_probs=32.5
Q ss_pred eEEEecCCCchhhhHHHHHHHcCCCccc-cccceeeEEeccccccccccc
Q psy17574 35 TYVITPTNTNFQDLVPVALQRLGYSKEN-FYSAKGYVGIKNWKPISISKI 83 (143)
Q Consensus 35 syvIVp~~t~f~qLV~tAL~~LGYS~~~-A~~AkG~I~V~nWkPLp~~~I 83 (143)
+=|-|+.++...|.++.|+.+-|+..+. ....+|.- .|||++.++-
T Consensus 12 t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~~---~~~~~~~~~d 58 (72)
T cd01760 12 TVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGLD---EKKPLDLDTD 58 (72)
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecCC---CcCCcCchhh
Confidence 4578899999999999999999998532 22223322 2677776653
No 39
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=25.78 E-value=1.8e+02 Score=19.15 Aligned_cols=61 Identities=11% Similarity=0.056 Sum_probs=38.3
Q ss_pred eEEEecCCCchhhhHHHHHHHcCCCc----cccccceeeEEeccccccccccccCCCcCcHHHHhhh
Q psy17574 35 TYVITPTNTNFQDLVPVALQRLGYSK----ENFYSAKGYVGIKNWKPISISKISENPATTVGDILGE 97 (143)
Q Consensus 35 syvIVp~~t~f~qLV~tAL~~LGYS~----~~A~~AkG~I~V~nWkPLp~~~Itd~p~~TVgd~L~e 97 (143)
.++.+..++...+.++. +..-|++. +......|.+-.+.+...+. .++=.+++++.+.+.-
T Consensus 2 ~~~~v~~~~~i~~a~~~-~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~-~~~v~~~~~l~~a~~~ 66 (96)
T cd04614 2 NVPTVWEETPLPVAVRI-MELANVKALPVLDDDGKLSGIITERDLIAKSE-VVTATKRTTVSECAQK 66 (96)
T ss_pred CccEeCCCCcHHHHHHH-HHHcCCCeEEEECCCCCEEEEEEHHHHhcCCC-cEEecCCCCHHHHHHH
Confidence 46788999999998874 46677764 22234468888788776542 3333455555544433
No 40
>COG5128 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=25.66 E-value=58 Score=27.39 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=31.8
Q ss_pred cccceeeeeEEEecCCCchhhhH-------------------HHHHHHcCCCcccccc
Q psy17574 27 RKAILETDTYVITPTNTNFQDLV-------------------PVALQRLGYSKENFYS 65 (143)
Q Consensus 27 ~~~~~e~dsyvIVp~~t~f~qLV-------------------~tAL~~LGYS~~~A~~ 65 (143)
++..+..++|.||-.+-+|++++ +.+|.+-||+.+..|.
T Consensus 122 eKs~e~d~eYmivDn~plls~FIsvP~E~n~lsc~~~vcGiI~gfL~~agfpc~vtAh 179 (208)
T COG5128 122 EKSREVDREYMIVDNDPLLSRFISVPDEWNGLSCDSIVCGIIQGFLMAAGFPCEVTAH 179 (208)
T ss_pred HHhhhcCceeEEecCchHHHHHhcCcchhcCcchHHHHHHHHHHHHHhcCCCCcceec
Confidence 34446788999999999999876 6789999999876654
No 41
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=25.63 E-value=75 Score=23.76 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=24.3
Q ss_pred eeeEE--EecCCCchhhhHHHHHHHcCCCccc
Q psy17574 33 TDTYV--ITPTNTNFQDLVPVALQRLGYSKEN 62 (143)
Q Consensus 33 ~dsyv--IVp~~t~f~qLV~tAL~~LGYS~~~ 62 (143)
..-|+ .|.++|.-.++|..||.++|--++.
T Consensus 15 ~~~y~sv~V~~~tt~~dvv~eaL~kfGl~~~~ 46 (97)
T cd01783 15 GVAYVSIRVNKDTTVQDVILEVLPLFGLQAEC 46 (97)
T ss_pred CcceEEEEecccchHHHHHHHHHHHhCcccCC
Confidence 44554 5667899999999999999998844
No 42
>CHL00193 ycf35 Ycf35; Provisional
Probab=25.08 E-value=45 Score=25.68 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=18.0
Q ss_pred EEEecCCCchhhhHHHHHHHcCCCccc
Q psy17574 36 YVITPTNTNFQDLVPVALQRLGYSKEN 62 (143)
Q Consensus 36 yvIVp~~t~f~qLV~tAL~~LGYS~~~ 62 (143)
|..|+-..-=.++...||.+|||....
T Consensus 4 fS~ikT~i~d~~~L~~AL~dLg~~~~~ 30 (128)
T CHL00193 4 FTKIKTSIQNLNLLKKALNDLNIEWKK 30 (128)
T ss_pred cccceeEEcCHHHHHHHHHHcCCCcee
Confidence 334443333346789999999999654
No 43
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=24.64 E-value=37 Score=24.70 Aligned_cols=76 Identities=18% Similarity=0.185 Sum_probs=44.0
Q ss_pred CCchhhhHHHHHHHcCCCccccccceeeEEe-ccccccccccccCCCcCcHHHHhhhhheeeEEEEEEeccCCcchHHhH
Q psy17574 42 NTNFQDLVPVALQRLGYSKENFYSAKGYVGI-KNWKPISISKISENPATTVGDILGELTTVATLRIKIFRTRPCILAEMK 120 (143)
Q Consensus 42 ~t~f~qLV~tAL~~LGYS~~~A~~AkG~I~V-~nWkPLp~~~Itd~p~~TVgd~L~el~~vvTLrI~l~r~~~~~~~eik 120 (143)
.+....=|+++|..+||+++.+..+.+.+.= -+|- +--.|-.++-.++..... ...+.-..--..+|++
T Consensus 15 S~~ik~kve~~l~~~gi~~~~~~~~v~~~~~~~~~a---------Diiv~s~~l~~~~~~~~~-~~v~~~~~~~d~~ei~ 84 (93)
T COG3414 15 STMIKMKVEEVLKELGIDVDVEQCAVDEIKALTDGA---------DIIVTSTKLADEFEDIPK-GYVVITGNGMDIEEIK 84 (93)
T ss_pred HHHHHHHHHHHHHHcCCCceeeeEEecccccCCCcc---------cEEEEehHhhhhcCcCCC-ceEEEEcccCCHHHHH
Confidence 4556778999999999999888888876531 1111 111233344444433222 1111122223359999
Q ss_pred HHHHHHH
Q psy17574 121 DKLLRLL 127 (143)
Q Consensus 121 ~klLk~L 127 (143)
++|+..|
T Consensus 85 ~~l~~~L 91 (93)
T COG3414 85 QKLLEIL 91 (93)
T ss_pred HHHHHHH
Confidence 9998876
No 44
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=23.86 E-value=1.8e+02 Score=21.80 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=27.5
Q ss_pred EEecCCCchhhhHHHHHHHcCCCccccccceeeEEe
Q psy17574 37 VITPTNTNFQDLVPVALQRLGYSKENFYSAKGYVGI 72 (143)
Q Consensus 37 vIVp~~t~f~qLV~tAL~~LGYS~~~A~~AkG~I~V 72 (143)
++|..++.=.++|..||.+.|-.++ -++.--.++|
T Consensus 20 Ilvt~~~~a~~vV~eALeKygL~~e-~p~~Y~LveV 54 (100)
T cd01781 20 ILLSINDNADRIVGEALEKYGLEKS-DPDDYCLVEV 54 (100)
T ss_pred EEecCCccHHHHHHHHHHHhCCCcc-CccceEEEEE
Confidence 5677788899999999999999874 4455566666
No 45
>PF04663 Phenol_monoox: Phenol hydroxylase conserved region; InterPro: IPR006756 Under aerobic conditions, phenol is usually hydroxylated to catechol and degraded via the meta or ortho pathways. Two types of phenol hydroxylase are known: one is a multi-component enzyme the other is a single-component monooxygenase. This signature is found in both types of enzymes [, ].; PDB: 3U52_F 2INN_F 2INP_E.
Probab=23.72 E-value=66 Score=22.71 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=19.0
Q ss_pred EEecCCCchhhhHHHHHHHc-CCCccc
Q psy17574 37 VITPTNTNFQDLVPVALQRL-GYSKEN 62 (143)
Q Consensus 37 vIVp~~t~f~qLV~tAL~~L-GYS~~~ 62 (143)
+-+|.+|+|.+||+.+|..+ ||-.|.
T Consensus 30 ~plpP~mpFg~l~~~vl~~~~~~hPD~ 56 (67)
T PF04663_consen 30 FPLPPDMPFGALVEQVLPPAYGQHPDF 56 (67)
T ss_dssp EEE-TTSBHHHHHHHTHHHHHTTSTTG
T ss_pred ecCCCCCcHHHHHHHhhhHhhccCCch
Confidence 45899999999999998754 554443
No 46
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=22.25 E-value=82 Score=22.19 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=18.1
Q ss_pred eeEEEecCCCchhhhHHHHHHHcCCCc
Q psy17574 34 DTYVITPTNTNFQDLVPVALQRLGYSK 60 (143)
Q Consensus 34 dsyvIVp~~t~f~qLV~tAL~~LGYS~ 60 (143)
|.++||.+|.-|..+++.+- +.|+.-
T Consensus 97 d~ivLvSgD~Df~~~v~~l~-~~g~~V 122 (146)
T PF01936_consen 97 DTIVLVSGDSDFAPLVRKLR-ERGKRV 122 (146)
T ss_dssp SEEEEE---GGGHHHHHHHH-HH--EE
T ss_pred CEEEEEECcHHHHHHHHHHH-HcCCEE
Confidence 99999999999999998876 778743
No 47
>PF07929 PRiA4_ORF3: Plasmid pRiA4b ORF-3-like protein; InterPro: IPR012912 Members of this family are similar to the protein product of ORF-3 (Q44206 from SWISSPROT) found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process []. Other proteins found in this family are annotated as being putative TnpR resolvases (Q9LCU7 from SWISSPROT, Q50439 from SWISSPROT), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor (Q7UEI4 from SWISSPROT) and in fact carries a LexA DNA binding domain (IPR006199 from INTERPRO), but no references were found to expand on this. ; PDB: 2I1S_A.
Probab=21.99 E-value=1.1e+02 Score=23.64 Aligned_cols=60 Identities=18% Similarity=0.411 Sum_probs=32.8
Q ss_pred EEEecCCCchhhhHHHHHHHcCCCccccccceeeEEeccccccc--------cccccCCCcCcHHHHhhh
Q psy17574 36 YVITPTNTNFQDLVPVALQRLGYSKENFYSAKGYVGIKNWKPIS--------ISKISENPATTVGDILGE 97 (143)
Q Consensus 36 yvIVp~~t~f~qLV~tAL~~LGYS~~~A~~AkG~I~V~nWkPLp--------~~~Itd~p~~TVgd~L~e 97 (143)
-+.||.++.|.||=.+...+.|+..+-...- .+.=+.|+..+ -....+.-+.++++++.+
T Consensus 21 ri~Vp~~~tl~~Lh~~Iq~afgw~~~HL~~F--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 88 (179)
T PF07929_consen 21 RIEVPADITLADLHEVIQAAFGWDDDHLYEF--FIGGERYGIPDEDGMDFSEGDEIKDASEVKLGELLLE 88 (179)
T ss_dssp EEEEETT-BHHHHHHHHHHHTT----S-EEE--EEE-TTTSSESSS---------EEETTT-BHHHC-BT
T ss_pred EEEECCCCCHHHHHHHHHHHhCcCCCEeEEE--EECCCccccccccccccccCCCcceeeeEEhhhhccC
Confidence 4889999999999999999999986422211 11134555541 122345557788888843
No 48
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=20.93 E-value=94 Score=27.69 Aligned_cols=82 Identities=18% Similarity=0.286 Sum_probs=54.9
Q ss_pred eeeeEEEecCCCchhhhHHHHHHHc---CCCccccccceeeEEeccccccccccccCCCc-----------Cc---HHHH
Q psy17574 32 ETDTYVITPTNTNFQDLVPVALQRL---GYSKENFYSAKGYVGIKNWKPISISKISENPA-----------TT---VGDI 94 (143)
Q Consensus 32 e~dsyvIVp~~t~f~qLV~tAL~~L---GYS~~~A~~AkG~I~V~nWkPLp~~~Itd~p~-----------~T---Vgd~ 94 (143)
|.++++||--...+.. ++.|+..| |+. -|.++++-+.|+|.+.|.+.+. .+ -|.+
T Consensus 258 edAe~~iV~~Gs~~~~-~~eav~~lr~~G~k-------vg~l~i~~~~PfP~~~i~~~l~~~k~ViVvE~n~~~Gq~g~l 329 (390)
T PRK08366 258 DDADFVFMGMGSLMGT-VKEAVDLLRKEGYK-------VGYAKVRWFRPFPKEELYEIAESVKGIAVLDRNFSFGQEGIL 329 (390)
T ss_pred CCCCEEEEEeCccHHH-HHHHHHHHHhcCCc-------eeeEEEeeecCCCHHHHHHHHhcCCEEEEEeCCCCCCcccHH
Confidence 4578999999888754 56666666 663 5899999999999987755321 11 2447
Q ss_pred hhhhheee---------EEEEEEeccCCcchHHhHH
Q psy17574 95 LGELTTVA---------TLRIKIFRTRPCILAEMKD 121 (143)
Q Consensus 95 L~el~~vv---------TLrI~l~r~~~~~~~eik~ 121 (143)
+.|+.... .=.|.=+.+++=..+||.+
T Consensus 330 ~~ev~~~l~~~~~~~~~~~~i~g~gGr~~t~~~i~~ 365 (390)
T PRK08366 330 FTEAKGALYNTDARPIMKNYIVGLGGRDFTVNDVKA 365 (390)
T ss_pred HHHHHHHHhccCCCCceeceEeCcCCccCCHHHHHH
Confidence 77776652 2334445666666666664
No 49
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=20.50 E-value=1e+02 Score=21.48 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=20.8
Q ss_pred hhhHHHHHHHcCCCccccccceeeEEecccc
Q psy17574 46 QDLVPVALQRLGYSKENFYSAKGYVGIKNWK 76 (143)
Q Consensus 46 ~qLV~tAL~~LGYS~~~A~~AkG~I~V~nWk 76 (143)
.+-++.-|..|||...+....-|...+....
T Consensus 9 ~~~l~~eL~~LgYR~v~~~~~pG~y~~~g~~ 39 (85)
T PF14814_consen 9 PAQLEQELELLGYRKVSNPDRPGEYSRSGNR 39 (85)
T ss_dssp HHHHHHHHHHTT-EE-SS--STTEEEEETTE
T ss_pred HHHHHHHHHHcCCCcCCCCCCCeEEEEECCE
Confidence 3445667999999998888888888877754
No 50
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=20.46 E-value=1.8e+02 Score=19.65 Aligned_cols=24 Identities=21% Similarity=0.481 Sum_probs=19.5
Q ss_pred EEecCCCchhhhHHHHHHHcCCCc
Q psy17574 37 VITPTNTNFQDLVPVALQRLGYSK 60 (143)
Q Consensus 37 vIVp~~t~f~qLV~tAL~~LGYS~ 60 (143)
+-+|.+.++.+|++..+..+|-+.
T Consensus 17 l~lP~~vpv~~li~~l~~~~~~~~ 40 (79)
T PF08817_consen 17 LALPADVPVAELIPELVELLGLPG 40 (79)
T ss_dssp EEEETTSBTTHHHHHHHHHS---S
T ss_pred EEcCCCCcHHHHHHHHHHHhCCcc
Confidence 669999999999999999999544
Done!