Query psy17574
Match_columns 143
No_of_seqs 28 out of 30
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 17:02:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17574.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17574hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tuo_A DNA-binding protein SAT 100.0 3.9E-58 1.3E-62 341.1 10.1 101 2-109 5-105 (105)
2 2al3_A TUG long isoform; TUG U 73.3 3.7 0.00013 29.2 3.8 38 39-82 26-63 (90)
3 1ixs_A Holliday junction DNA h 70.2 1.3 4.3E-05 29.1 0.7 38 47-97 18-56 (62)
4 1cuk_A RUVA protein; DNA repai 64.8 2.4 8.2E-05 33.2 1.5 38 45-97 160-197 (203)
5 3h9d_A ATG8, microtubule-assoc 63.8 39 0.0013 24.6 7.8 67 9-97 34-100 (119)
6 2c5l_C Phosphoinositide-specif 56.4 10 0.00034 28.1 3.4 26 34-59 19-46 (117)
7 4a0k_B E3 ubiquitin-protein li 47.1 4.6 0.00016 29.2 0.3 33 50-82 11-43 (117)
8 1pqs_A Cell division control p 45.0 15 0.00052 25.0 2.7 24 36-59 5-28 (77)
9 1eo6_A GATE-16, golgi-associat 42.4 91 0.0031 22.2 8.0 70 4-97 28-97 (117)
10 2r2q_A Gamma-aminobutyric acid 39.8 74 0.0025 22.4 5.8 50 36-97 47-96 (110)
11 1q1o_A Cell division control p 39.0 8.5 0.00029 27.7 0.7 25 35-59 25-49 (98)
12 1wxa_A Afadin, AF-6 protein; R 37.3 24 0.00082 25.3 2.9 36 37-73 28-63 (116)
13 2ztd_A Holliday junction ATP-d 34.7 11 0.00037 29.9 0.7 39 45-97 164-203 (212)
14 3m95_A Autophagy related prote 34.1 1.4E+02 0.0047 21.9 8.1 67 9-97 39-105 (125)
15 2kvr_A Ubiquitin carboxyl-term 33.9 26 0.00088 25.6 2.6 53 38-98 61-117 (130)
16 1ixr_A Holliday junction DNA h 33.2 9 0.00031 29.7 0.0 40 45-97 146-185 (191)
17 3if8_A Hzwilch, protein zwilch 31.7 20 0.0007 30.9 1.9 77 43-122 185-273 (339)
18 2jtt_C Calcyclin-binding prote 31.0 20 0.00068 21.5 1.3 17 84-100 1-17 (35)
19 2ooa_A E3 ubiquitin-protein li 30.2 11 0.00037 24.6 -0.0 16 52-67 17-32 (52)
20 3onh_A Ubiquitin-activating en 27.6 40 0.0014 25.3 2.7 44 43-94 20-66 (127)
21 2d9s_A CBL E3 ubiquitin protei 26.9 13 0.00043 24.4 -0.1 16 52-67 15-30 (53)
22 2qip_A Protein of unknown func 25.8 54 0.0018 23.7 3.1 28 32-59 108-135 (165)
23 2ylm_A Ubiquitin carboxyl-term 25.7 1.4E+02 0.0046 26.2 6.2 72 31-108 145-216 (530)
24 3sk7_A Protein SEQA; sequestra 24.4 15 0.0005 27.4 -0.2 40 29-68 74-114 (116)
25 4gdk_A Ubiquitin-like protein 24.3 1.8E+02 0.006 20.0 5.9 50 37-97 24-73 (91)
26 3fpn_B Geobacillus stearotherm 23.8 72 0.0025 22.1 3.4 39 36-74 15-53 (106)
27 1j3e_A SEQA protein; protein-D 23.5 16 0.00056 27.1 -0.1 43 27-69 71-114 (115)
28 1uxc_A FRUR (1-57), fructose r 22.6 43 0.0015 21.3 1.9 19 46-64 35-53 (65)
29 3rui_B Autophagy-related prote 22.6 2.2E+02 0.0074 20.4 7.9 67 9-97 33-99 (118)
30 1lrr_A SEQA protein; protein-D 22.2 18 0.00061 27.4 -0.1 42 28-69 88-130 (131)
31 2oo9_A E3 ubiquitin-protein li 21.7 20 0.00069 22.9 0.1 18 51-68 9-26 (46)
32 1fdr_A Flavodoxin reductase; f 21.4 67 0.0023 23.7 3.0 42 33-75 205-247 (248)
No 1
>3tuo_A DNA-binding protein SATB1; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.9e-58 Score=341.12 Aligned_cols=101 Identities=33% Similarity=0.605 Sum_probs=96.6
Q ss_pred CCccCeEEEEeeecCcccccccccccccceeeeeEEEecCCCchhhhHHHHHHHcCCCccccccceeeEEeccccccccc
Q psy17574 2 GKSLPVHCVVEAVYSVHHWKSAKNSRKAILETDTYVITPTNTNFQDLVPVALQRLGYSKENFYSAKGYVGIKNWKPISIS 81 (143)
Q Consensus 2 ~~~lPV~CVVE~~~~~~~~~~~~~~~~~~~e~dsyvIVp~~t~f~qLV~tAL~~LGYS~~~A~~AkG~I~V~nWkPLp~~ 81 (143)
+.|||||||||+++++++ ++.++|||||||||++|+|+|||+|||+||||||++|++|+|+|+|||||||||+
T Consensus 5 ~~mlPV~CVVE~~~~~~~-------~~~~~E~~syviI~~~t~f~qLV~taL~~LGYs~~~a~~A~G~I~v~nWkPLp~~ 77 (105)
T 3tuo_A 5 GTMLPVFCVVEHYENAIE-------YDCKEEHAEFVLVRKDMLFNQLIEMALLSLGYSHSSAAQAKGLIQVGKWNPVPLS 77 (105)
T ss_dssp CSEEEEEEEEEEECCCSS-------CCCEEEEEEEEEEETTSBGGGHHHHHHHHTTCCHHHHHHCEEEEEETTSCCBCGG
T ss_pred ccceeeEEEEEecccccc-------cccccceeeEEEEeccchHHHHHHHHHHHcCCCchhhhhccceEEEccccCcCHH
Confidence 689999999999999975 3456899999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcCcHHHHhhhhheeeEEEEEEe
Q psy17574 82 KISENPATTVGDILGELTTVATLRIKIF 109 (143)
Q Consensus 82 ~Itd~p~~TVgd~L~el~~vvTLrI~l~ 109 (143)
+|||||++||||||+|||||||||||+|
T Consensus 78 ~itd~p~~TV~d~L~el~~vvTLrIql~ 105 (105)
T 3tuo_A 78 YVTDAPDATVADMLQDVYHVVTLKIQLH 105 (105)
T ss_dssp GTCCCTTCBHHHHHTTTTTTEEEEEECC
T ss_pred HcCCCchhhHHHHHHHhhheEEEEEEeC
Confidence 9999999999999999999999999986
No 2
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=73.28 E-value=3.7 Score=29.17 Aligned_cols=38 Identities=8% Similarity=0.139 Sum_probs=30.4
Q ss_pred ecCCCchhhhHHHHHHHcCCCccccccceeeEEecccccccccc
Q psy17574 39 TPTNTNFQDLVPVALQRLGYSKENFYSAKGYVGIKNWKPISISK 82 (143)
Q Consensus 39 Vp~~t~f~qLV~tAL~~LGYS~~~A~~AkG~I~V~nWkPLp~~~ 82 (143)
|..++.++|+++.|.+++|+.. ++..++-+| |+|.++.
T Consensus 26 vtp~t~L~~VL~eaC~K~gl~~-----~~~~Lkh~~-k~lDLSl 63 (90)
T 2al3_A 26 VTPSTVLLQVLEDTCRRQDFNP-----SEYDLKFQR-TVLDLSL 63 (90)
T ss_dssp CCTTSBHHHHHHHHHHHTTCCG-----GGCEEEETT-EEESSSC
T ss_pred ECCCCCHHHHHHHHHHHhCCCh-----hhCeEEeCC-Eeccccc
Confidence 5788999999999999999964 366777666 8887653
No 3
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=70.21 E-value=1.3 Score=29.06 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=25.2
Q ss_pred hhHHHHHHHcCCCccccccceeeEEecccccccccccc-CCCcCcHHHHhhh
Q psy17574 47 DLVPVALQRLGYSKENFYSAKGYVGIKNWKPISISKIS-ENPATTVGDILGE 97 (143)
Q Consensus 47 qLV~tAL~~LGYS~~~A~~AkG~I~V~nWkPLp~~~It-d~p~~TVgd~L~e 97 (143)
+=+-.||..|||+...|..|--. +. +.++.++++++..
T Consensus 18 ~ea~~AL~aLGY~~~ea~kav~~-------------v~~~~~~~~~e~lIr~ 56 (62)
T 1ixs_A 18 EEAVMALAALGFKEAQARAVVLD-------------LLAQNPKARAQDLIKE 56 (62)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHH-------------HHHHCTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH-------------HHhcCCCCCHHHHHHH
Confidence 33778999999998777665221 11 1345688888764
No 4
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=64.83 E-value=2.4 Score=33.25 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=26.0
Q ss_pred hhhhHHHHHHHcCCCccccccceeeEEeccccccccccccCCCcCcHHHHhhh
Q psy17574 45 FQDLVPVALQRLGYSKENFYSAKGYVGIKNWKPISISKISENPATTVGDILGE 97 (143)
Q Consensus 45 f~qLV~tAL~~LGYS~~~A~~AkG~I~V~nWkPLp~~~Itd~p~~TVgd~L~e 97 (143)
..| +..||..|||+...|..|-- .+. .++.++++++.+
T Consensus 160 ~~e-a~~AL~~LGy~~~ea~~av~-------------~~~-~~~~~~e~lir~ 197 (203)
T 1cuk_A 160 EQE-AVARLVALGYKPQEASRMVS-------------KIA-RPDASSETLIRE 197 (203)
T ss_dssp HHH-HHHHHHHHTCCHHHHHHHHH-------------HSC-CSSCCHHHHHHH
T ss_pred HHH-HHHHHHHcCCCHHHHHHHHH-------------Hhc-ccCCCHHHHHHH
Confidence 344 66799999999877776632 121 456788888765
No 5
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=63.82 E-value=39 Score=24.57 Aligned_cols=67 Identities=18% Similarity=0.349 Sum_probs=46.3
Q ss_pred EEEeeecCcccccccccccccceeeeeEEEecCCCchhhhHHHHHHHcCCCccccccceeeEEeccccccccccccCCCc
Q psy17574 9 CVVEAVYSVHHWKSAKNSRKAILETDTYVITPTNTNFQDLVPVALQRLGYSKENFYSAKGYVGIKNWKPISISKISENPA 88 (143)
Q Consensus 9 CVVE~~~~~~~~~~~~~~~~~~~e~dsyvIVp~~t~f~qLV~tAL~~LGYS~~~A~~AkG~I~V~nWkPLp~~~Itd~p~ 88 (143)
.|||..... +-+.....-| +||.+..|.|++...=.+|.-+.+.|. -+-|+| . +| .++
T Consensus 34 VIvEr~~~~---------~~P~Ldk~Kf-lVp~~~tv~qf~~~iRkrl~l~~~~al----Fl~Vn~-~-~p------~~~ 91 (119)
T 3h9d_A 34 IICEKVYNS---------DIGELDRCKF-LVPSDLTVGQFVSVLRKRVQLEAESAL----FVYTND-T-VL------PSS 91 (119)
T ss_dssp EEEEECTTS---------SCCCCSSCEE-EEETTCBHHHHHHHHHHHHTCCTTSCC----EEEETT-E-EC------CTT
T ss_pred EEEEecCCC---------CCCccCcceE-EcCCCCCHHHHHHHHHHHhCCCccceE----EEEECC-c-CC------Ccc
Confidence 478886532 2333444455 899999999999999999988765432 344665 3 55 677
Q ss_pred CcHHHHhhh
Q psy17574 89 TTVGDILGE 97 (143)
Q Consensus 89 ~TVgd~L~e 97 (143)
+|+|++-.+
T Consensus 92 ~~m~~lY~~ 100 (119)
T 3h9d_A 92 AQMADIYSK 100 (119)
T ss_dssp SBHHHHHHH
T ss_pred chHHHHHHH
Confidence 888887654
No 6
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A
Probab=56.35 E-value=10 Score=28.09 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=21.4
Q ss_pred eeEEEe--cCCCchhhhHHHHHHHcCCC
Q psy17574 34 DTYVIT--PTNTNFQDLVPVALQRLGYS 59 (143)
Q Consensus 34 dsyvIV--p~~t~f~qLV~tAL~~LGYS 59 (143)
.-|+|| +..+.=+|+|..||.+.||+
T Consensus 19 ~py~iv~vt~~STAqdvI~eaL~kag~~ 46 (117)
T 2c5l_C 19 QPRTVIKAPRVSTAQDVIQQTLCKAKYS 46 (117)
T ss_dssp CCEEEEEEETTCBHHHHHHHHHHHTTTS
T ss_pred CCeEEEEeCCCCcHHHHHHHHHHHcCCc
Confidence 346554 56788999999999999998
No 7
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=47.14 E-value=4.6 Score=29.19 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=14.2
Q ss_pred HHHHHHcCCCccccccceeeEEecccccccccc
Q psy17574 50 PVALQRLGYSKENFYSAKGYVGIKNWKPISISK 82 (143)
Q Consensus 50 ~tAL~~LGYS~~~A~~AkG~I~V~nWkPLp~~~ 82 (143)
++.+.+=||+..++..++..+.|++|+++++-.
T Consensus 11 ~~~~~~gg~~~~~~~~~~~r~~ikkw~ava~w~ 43 (117)
T 4a0k_B 11 ENLYFQGGGRGTNSGAGKKRFEVKKWNAVALWA 43 (117)
T ss_dssp -----------------CCSEEEEEEEEEEEEE
T ss_pred hhhhhccCCCCCCCCCcCCceEEEEEEEEEEEe
Confidence 456777899998999999999999999998743
No 8
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=45.00 E-value=15 Score=24.97 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=21.8
Q ss_pred EEEecCCCchhhhHHHHHHHcCCC
Q psy17574 36 YVITPTNTNFQDLVPVALQRLGYS 59 (143)
Q Consensus 36 yvIVp~~t~f~qLV~tAL~~LGYS 59 (143)
+.+||.++.|+||++..=.|||-+
T Consensus 5 ~i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 5 TLLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EEECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEEeCCCCCHHHHHHHHHHHHccc
Confidence 577899999999999999999964
No 9
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=42.41 E-value=91 Score=22.24 Aligned_cols=70 Identities=16% Similarity=0.359 Sum_probs=46.2
Q ss_pred ccCeEEEEeeecCcccccccccccccceeeeeEEEecCCCchhhhHHHHHHHcCCCccccccceeeEEeccccccccccc
Q psy17574 4 SLPVHCVVEAVYSVHHWKSAKNSRKAILETDTYVITPTNTNFQDLVPVALQRLGYSKENFYSAKGYVGIKNWKPISISKI 83 (143)
Q Consensus 4 ~lPV~CVVE~~~~~~~~~~~~~~~~~~~e~dsyvIVp~~t~f~qLV~tAL~~LGYS~~~A~~AkG~I~V~nWkPLp~~~I 83 (143)
.+|| |||..... .-+.....-| +||.+..|.|++...=.+|+-+.+.|. -+-|+| +
T Consensus 28 ~IPV--Ive~~~~s---------~~p~l~k~Kf-lVp~~~tv~~f~~~iRk~l~l~~~~al----fl~vn~--------~ 83 (117)
T 1eo6_A 28 RVPV--IVEKVSGS---------QIVDIDKRKY-LVPSDITVAQFMWIIRKRIQLPSEKAI----FLFVDK--------T 83 (117)
T ss_dssp EEEE--EEEECTTC---------SSCCCSCCEE-EEETTSBHHHHHHHHHHHHTCCTTSCC----EEEBTT--------B
T ss_pred eEEE--EEEecCCC---------CCCcccceEE-EcCCCCCHHHHHHhhHHhhcCCCCCcE----EEEECC--------E
Confidence 4555 67876532 1233444445 799999999999998899988876554 345554 2
Q ss_pred cCCCcCcHHHHhhh
Q psy17574 84 SENPATTVGDILGE 97 (143)
Q Consensus 84 td~p~~TVgd~L~e 97 (143)
...+++|+|++-.+
T Consensus 84 ~p~~~~~m~~LY~~ 97 (117)
T 1eo6_A 84 VPQSSLTMGQLYEK 97 (117)
T ss_dssp CCCTTSBHHHHHHH
T ss_pred ecCccchHHHHHHH
Confidence 33467888887654
No 10
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=39.84 E-value=74 Score=22.38 Aligned_cols=50 Identities=12% Similarity=0.257 Sum_probs=36.3
Q ss_pred EEEecCCCchhhhHHHHHHHcCCCccccccceeeEEeccccccccccccCCCcCcHHHHhhh
Q psy17574 36 YVITPTNTNFQDLVPVALQRLGYSKENFYSAKGYVGIKNWKPISISKISENPATTVGDILGE 97 (143)
Q Consensus 36 yvIVp~~t~f~qLV~tAL~~LGYS~~~A~~AkG~I~V~nWkPLp~~~Itd~p~~TVgd~L~e 97 (143)
=.+||.+..|.|++...=.+|+-+.+.|. -+-|+| +...+++|+|++-.+
T Consensus 47 KflVp~~~tv~~~~~~iRk~l~l~~~~al----fl~vn~--------~~p~~~~~m~~LY~~ 96 (110)
T 2r2q_A 47 KYLVPSDLTVGQFYFLIRKRIHLRPEDAL----FFFVNN--------TIPPTSATMGQLYED 96 (110)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCTTSCC----EEEBTT--------BCCCTTSBHHHHHHH
T ss_pred EEEeCCCCcHHHHHHHHHHHhcCCCCCcE----EEEECC--------EecCccChHHHHHHH
Confidence 35789999999999998899988875554 345554 233567888887544
No 11
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=39.04 E-value=8.5 Score=27.65 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=22.7
Q ss_pred eEEEecCCCchhhhHHHHHHHcCCC
Q psy17574 35 TYVITPTNTNFQDLVPVALQRLGYS 59 (143)
Q Consensus 35 syvIVp~~t~f~qLV~tAL~~LGYS 59 (143)
.+.+||.++.|+||++..=.||+-+
T Consensus 25 ~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 25 FTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHHHHHcCC
Confidence 5778899999999999999999876
No 12
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5
Probab=37.35 E-value=24 Score=25.25 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=28.0
Q ss_pred EEecCCCchhhhHHHHHHHcCCCccccccceeeEEec
Q psy17574 37 VITPTNTNFQDLVPVALQRLGYSKENFYSAKGYVGIK 73 (143)
Q Consensus 37 vIVp~~t~f~qLV~tAL~~LGYS~~~A~~AkG~I~V~ 73 (143)
+++..++.=.++|..||.++|..++.+ ..-..++|.
T Consensus 28 vlvt~~tta~~vV~eaLekygL~~~~~-~~Y~LveV~ 63 (116)
T 1wxa_A 28 ILLSTTDTADFAVAESLEKYGLEKENP-KDYCIARVM 63 (116)
T ss_dssp EECCSSCCHHHHHHHHHHHHTCSSSCT-TTEEEEEEE
T ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCc-hheEEEEEE
Confidence 566778899999999999999998443 345666664
No 13
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=34.72 E-value=11 Score=29.95 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=25.3
Q ss_pred hhhhHHHHHHHcCCCccccccceeeEEeccccccccccc-cCCCcCcHHHHhhh
Q psy17574 45 FQDLVPVALQRLGYSKENFYSAKGYVGIKNWKPISISKI-SENPATTVGDILGE 97 (143)
Q Consensus 45 f~qLV~tAL~~LGYS~~~A~~AkG~I~V~nWkPLp~~~I-td~p~~TVgd~L~e 97 (143)
..| +..||..|||+...|..|- ..+ ...|+.++++++.+
T Consensus 164 ~~e-a~~AL~~LGy~~~ea~~av-------------~~~~~~~~~~~~e~lir~ 203 (212)
T 2ztd_A 164 RSP-VVEALVGLGFAAKQAEEAT-------------DTVLAANHDATTSSALRS 203 (212)
T ss_dssp HHH-HHHHHHHTTCCHHHHHHHH-------------HHHHHHCTTCCHHHHHHH
T ss_pred HHH-HHHHHHHcCCCHHHHHHHH-------------HHHHhcCCCCCHHHHHHH
Confidence 445 6679999999987777662 122 11345677777654
No 14
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=34.14 E-value=1.4e+02 Score=21.91 Aligned_cols=67 Identities=19% Similarity=0.343 Sum_probs=45.6
Q ss_pred EEEeeecCcccccccccccccceeeeeEEEecCCCchhhhHHHHHHHcCCCccccccceeeEEeccccccccccccCCCc
Q psy17574 9 CVVEAVYSVHHWKSAKNSRKAILETDTYVITPTNTNFQDLVPVALQRLGYSKENFYSAKGYVGIKNWKPISISKISENPA 88 (143)
Q Consensus 9 CVVE~~~~~~~~~~~~~~~~~~~e~dsyvIVp~~t~f~qLV~tAL~~LGYS~~~A~~AkG~I~V~nWkPLp~~~Itd~p~ 88 (143)
.|||..... +-+.....-| +||.+..+.|++...=.+|.-+.+.|. -+-|+| -+| .++
T Consensus 39 VIvEr~~~s---------~lP~LdK~Kf-lVp~~~tv~qf~~~IRkrl~L~~~~al----Fl~Vnn--~lP------s~s 96 (125)
T 3m95_A 39 VIVEKAPKA---------RLGDLDKKKY-LVPSDLTVGQFYFLIRKRIHLRPEDAL----FFFVNN--VIP------PTS 96 (125)
T ss_dssp EEEEECTTC---------SSCCCSCCEE-EEETTSBHHHHHHHHHHHTTCCTTSCC----EEEBTT--BCC------CTT
T ss_pred EEEEecCCC---------CCccccCCEE-EcCCCCEeeeehhhhHhhcCCCccccE----EEEECC--ccC------Ccc
Confidence 378886532 2334444455 899999999999999999988765443 244565 243 677
Q ss_pred CcHHHHhhh
Q psy17574 89 TTVGDILGE 97 (143)
Q Consensus 89 ~TVgd~L~e 97 (143)
+|+|++-.+
T Consensus 97 ~~m~~lY~~ 105 (125)
T 3m95_A 97 ATMGSLYQE 105 (125)
T ss_dssp SBHHHHHHH
T ss_pred chHHHHHHH
Confidence 888887643
No 15
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=33.94 E-value=26 Score=25.58 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=34.7
Q ss_pred EecCCCchhhhHHHHHHHcCCCccccccceeeEEecc----ccccccccccCCCcCcHHHHhhhh
Q psy17574 38 ITPTNTNFQDLVPVALQRLGYSKENFYSAKGYVGIKN----WKPISISKISENPATTVGDILGEL 98 (143)
Q Consensus 38 IVp~~t~f~qLV~tAL~~LGYS~~~A~~AkG~I~V~n----WkPLp~~~Itd~p~~TVgd~L~el 98 (143)
=|++++.|.+|++.+=..|||+.+. -+=+..+.+ ++|- + -.|+.|++....++
T Consensus 61 rv~k~~~~~~~~~~va~~lg~~~~~---~RlW~~~~RqN~T~Rp~----~-~d~~~t~~~~~~~~ 117 (130)
T 2kvr_A 61 KVLKNSSLAEFVQSLSQTMGFPQDQ---IRLWPMQARSNGTKRPA----M-LDNEADGNKTMIEL 117 (130)
T ss_dssp ECCTTSBHHHHHHHHHHHHCCCGGG---CEEEECCCCBTTBCCCC----C-CCTTGGGTSBTHHH
T ss_pred EEeccCcHHHHHHHHHHHhCCCccc---EEEEEeecCCCCCCCCC----C-CCccccHHHHHHHh
Confidence 5789999999999999999999643 222222211 3442 2 55667777666554
No 16
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=33.24 E-value=9 Score=29.74 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHcCCCccccccceeeEEeccccccccccccCCCcCcHHHHhhh
Q psy17574 45 FQDLVPVALQRLGYSKENFYSAKGYVGIKNWKPISISKISENPATTVGDILGE 97 (143)
Q Consensus 45 f~qLV~tAL~~LGYS~~~A~~AkG~I~V~nWkPLp~~~Itd~p~~TVgd~L~e 97 (143)
..| +-.||..|||+...|..|--.+. .+.|+.++++++.+
T Consensus 146 ~~e-a~~AL~~LGy~~~ea~~av~~~~------------~~~~~~~~e~lir~ 185 (191)
T 1ixr_A 146 AEE-AVMALAALGFKEAQARAVVLDLL------------AQNPKARAQDLIKE 185 (191)
T ss_dssp -----------------------------------------------------
T ss_pred HHH-HHHHHHHcCCCHHHHHHHHHHHH------------hcCCCCCHHHHHHH
Confidence 344 56799999999877776632220 11345677776654
No 17
>3if8_A Hzwilch, protein zwilch homolog; incomplete beta-barrel, alternative splicing, cell cycle, CE division, kinetochore, mitosis, polymorphism; 2.55A {Homo sapiens}
Probab=31.71 E-value=20 Score=30.86 Aligned_cols=77 Identities=23% Similarity=0.343 Sum_probs=40.4
Q ss_pred CchhhhHHHHHHHcCCCccccccceeeEEeccccccccccccCCCcC---------cHHHHhh--hhheeeEEEEEEecc
Q psy17574 43 TNFQDLVPVALQRLGYSKENFYSAKGYVGIKNWKPISISKISENPAT---------TVGDILG--ELTTVATLRIKIFRT 111 (143)
Q Consensus 43 t~f~qLV~tAL~~LGYS~~~A~~AkG~I~V~nWkPLp~~~Itd~p~~---------TVgd~L~--el~~vvTLrI~l~r~ 111 (143)
..+.+|=..-..| .|.++.++||.-|--=.|.-.++.-.-.-+. +|.+||+ -|++-+||.|++-++
T Consensus 185 ~nLE~LK~~HkkR---HhsS~vttkGfAqyeLf~st~lddt~~~SqssItlDisWspVd~iLq~PPLsStAtLNIkvesG 261 (339)
T 3if8_A 185 VNLENLKNLHKKR---HHLSTVTSKGFAQYELFKSSALDDTITASQTAIALDISWSPVDEILQIPPLSSTATLNIKVESG 261 (339)
T ss_dssp CCHHHHHHHHHHH---HTCSCCEEEEEEEEEEECC----------CCCEEEEEEESCCCSTTCCCCTTSEEEEEEC----
T ss_pred CCHHHHHHHHhcc---ccccceeecceeeeeeccccccccccccccceEEEEEEeccHHHHhcCCCccccceEEEEecCC
Confidence 3445554444443 4678999999999988888777655444443 3677887 489999999999887
Q ss_pred CC-cchHHhHHH
Q psy17574 112 RP-CILAEMKDK 122 (143)
Q Consensus 112 ~~-~~~~eik~k 122 (143)
.| +++..+-|.
T Consensus 262 dpRspl~~l~RE 273 (339)
T 3if8_A 262 EPRGPLNHLYRE 273 (339)
T ss_dssp -------CCCHH
T ss_pred CccchhHHHHHH
Confidence 76 455444433
No 18
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=30.99 E-value=20 Score=21.45 Aligned_cols=17 Identities=6% Similarity=0.180 Sum_probs=11.9
Q ss_pred cCCCcCcHHHHhhhhhe
Q psy17574 84 SENPATTVGDILGELTT 100 (143)
Q Consensus 84 td~p~~TVgd~L~el~~ 100 (143)
+++|++.+.+|++.+|.
T Consensus 1 ~~dp~~~l~~~fk~iY~ 17 (35)
T 2jtt_C 1 GPGSSEGLMNVLKKIYE 17 (35)
T ss_dssp ----CCSHHHHHHHHHT
T ss_pred CCChhHHHHHHHHHHHh
Confidence 47899999999999985
No 19
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=30.23 E-value=11 Score=24.64 Aligned_cols=16 Identities=31% Similarity=0.285 Sum_probs=13.0
Q ss_pred HHHHcCCCccccccce
Q psy17574 52 ALQRLGYSKENFYSAK 67 (143)
Q Consensus 52 AL~~LGYS~~~A~~Ak 67 (143)
-|..+|||.+.|.+|=
T Consensus 17 ~Lm~mGFsr~~ai~AL 32 (52)
T 2ooa_A 17 KLMGEGYAFEEVKRAL 32 (52)
T ss_dssp HHHHTTCCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHH
Confidence 4788999998887763
No 20
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=27.59 E-value=40 Score=25.31 Aligned_cols=44 Identities=11% Similarity=0.165 Sum_probs=29.4
Q ss_pred CchhhhHHHHHHHcCCCccccccc---eeeEEeccccccccccccCCCcCcHHHH
Q psy17574 43 TNFQDLVPVALQRLGYSKENFYSA---KGYVGIKNWKPISISKISENPATTVGDI 94 (143)
Q Consensus 43 t~f~qLV~tAL~~LGYS~~~A~~A---kG~I~V~nWkPLp~~~Itd~p~~TVgd~ 94 (143)
+.+.+||+..-.++||+.|.+..- .|.|- =-...||-+.|..|+
T Consensus 20 ~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLy--------D~DfDDnl~k~L~dL 66 (127)
T 3onh_A 20 MKLSDFVVLIREKYSYPQDISLLDASNQRLLF--------DYDFEDLNDRTLSEI 66 (127)
T ss_dssp CBHHHHHHHHHHHHTCCSSEEEEETTTTEEEE--------ETTBCTTTTSBTTTT
T ss_pred cCHHHHHHHHHHhcCCCCcEEEEecCCCCeEe--------CCCccccccCcHHHc
Confidence 589999999767899998777662 34441 112456666666655
No 21
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=26.86 E-value=13 Score=24.39 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=13.2
Q ss_pred HHHHcCCCccccccce
Q psy17574 52 ALQRLGYSKENFYSAK 67 (143)
Q Consensus 52 AL~~LGYS~~~A~~Ak 67 (143)
-|..+||+.+.+.+|=
T Consensus 15 ~L~~lGF~r~~ai~AL 30 (53)
T 2d9s_A 15 RLMSQGYSYQDIQKAL 30 (53)
T ss_dssp HHHHHTCCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHH
Confidence 4788999999888774
No 22
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=25.78 E-value=54 Score=23.71 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=24.2
Q ss_pred eeeeEEEecCCCchhhhHHHHHHHcCCC
Q psy17574 32 ETDTYVITPTNTNFQDLVPVALQRLGYS 59 (143)
Q Consensus 32 e~dsyvIVp~~t~f~qLV~tAL~~LGYS 59 (143)
..|.+|||.+|.-|..+++.+-.++|..
T Consensus 108 ~~d~~vLvSgD~DF~plv~~lr~~~G~~ 135 (165)
T 2qip_A 108 DVDRVILVSGDGDFSLLVERIQQRYNKK 135 (165)
T ss_dssp GCSEEEEECCCGGGHHHHHHHHHHHCCE
T ss_pred cCCEEEEEECChhHHHHHHHHHHHcCcE
Confidence 5799999999999999999877767854
No 23
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=25.66 E-value=1.4e+02 Score=26.21 Aligned_cols=72 Identities=21% Similarity=0.289 Sum_probs=50.3
Q ss_pred eeeeeEEEecCCCchhhhHHHHHHHcCCCccccccceeeEEeccccccccccccCCCcCcHHHHhhhhheeeEEEEEE
Q psy17574 31 LETDTYVITPTNTNFQDLVPVALQRLGYSKENFYSAKGYVGIKNWKPISISKISENPATTVGDILGELTTVATLRIKI 108 (143)
Q Consensus 31 ~e~dsyvIVp~~t~f~qLV~tAL~~LGYS~~~A~~AkG~I~V~nWkPLp~~~Itd~p~~TVgd~L~el~~vvTLrI~l 108 (143)
..--.-+.|+++...++|++.+..++|.+.+.--.--.-|+ |--++.| ++|..|+.+.|+||.+=-.|=+|.
T Consensus 145 L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~-----~~~ie~l-~~~~~t~~~~~~eL~~GdII~fQ~ 216 (530)
T 2ylm_A 145 LNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVK-----PNLTERI-QDYDVSLDKALDELMDGDIIVFQK 216 (530)
T ss_dssp EEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEE-----TTEEEEC-CCSSSBHHHHSTTCCTTEEEEEEE
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecC-----CCceeEc-ccccccHHHHHhcccCCCEEEEEe
Confidence 44555678999999999999999999999876544433332 2123332 557778888888887766655554
No 24
>3sk7_A Protein SEQA; sequestration, negative regulator, DNA replication initiatio binding, replication inhibitor; HET: FME; 1.50A {Vibrio cholerae}
Probab=24.44 E-value=15 Score=27.36 Aligned_cols=40 Identities=30% Similarity=0.403 Sum_probs=28.7
Q ss_pred cceeeeeEEEecCCCch-hhhHHHHHHHcCCCcccccccee
Q psy17574 29 AILETDTYVITPTNTNF-QDLVPVALQRLGYSKENFYSAKG 68 (143)
Q Consensus 29 ~~~e~dsyvIVp~~t~f-~qLV~tAL~~LGYS~~~A~~AkG 68 (143)
.+-.+.=+||--.||.= ..+++.+++.+||+++.+....|
T Consensus 74 ~Ip~TpfWViTN~NT~rKr~ml~~vm~~mg~~~~lie~V~~ 114 (116)
T 3sk7_A 74 AIPNTPFWVITNNNTSRKQQMVEQVMVRMGFPSDIIEKVTH 114 (116)
T ss_dssp ECTTSSCEECCCSCHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCCCCeeEEeCCCcHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 34455556776666653 57899999999999987765544
No 25
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=24.30 E-value=1.8e+02 Score=19.98 Aligned_cols=50 Identities=12% Similarity=0.202 Sum_probs=37.3
Q ss_pred EEecCCCchhhhHHHHHHHcCCCccccccceeeEEeccccccccccccCCCcCcHHHHhhh
Q psy17574 37 VITPTNTNFQDLVPVALQRLGYSKENFYSAKGYVGIKNWKPISISKISENPATTVGDILGE 97 (143)
Q Consensus 37 vIVp~~t~f~qLV~tAL~~LGYS~~~A~~AkG~I~V~nWkPLp~~~Itd~p~~TVgd~L~e 97 (143)
..||++..|.|++...=.+|.-+.+.|. -+-|+| ....+|++|+||+-.+
T Consensus 24 flVp~~~tv~~~~~~lRkrL~l~~~~al----FlyVnn-------~~~P~~d~~~~~Ly~~ 73 (91)
T 4gdk_A 24 WAVERTRTIQGLIDFIKKFLKLVASEQL----FIYVNQ-------SFAPSPDQEVGTLYEC 73 (91)
T ss_dssp EEEETTCBHHHHHHHHHHHTTCCSSSCC----EEEETT-------TBCCCTTCBHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCCCCeE----EEEECC-------ccCCChhhHHHHHHHH
Confidence 6899999999999999999998764432 233443 3456789999988654
No 26
>3fpn_B Geobacillus stearothermophilus UVRB interaction domain; UVRA, nucleotide excision repair, DNA repair, DNA binding protein; 1.80A {Geobacillus stearothermophilus}
Probab=23.78 E-value=72 Score=22.13 Aligned_cols=39 Identities=8% Similarity=0.118 Sum_probs=27.9
Q ss_pred EEEecCCCchhhhHHHHHHHcCCCccccccceeeEEecc
Q psy17574 36 YVITPTNTNFQDLVPVALQRLGYSKENFYSAKGYVGIKN 74 (143)
Q Consensus 36 yvIVp~~t~f~qLV~tAL~~LGYS~~~A~~AkG~I~V~n 74 (143)
.-|-++...=.+-+..-|.++||.........|...|+.
T Consensus 15 l~l~~G~~i~~~~l~~~L~~~GY~r~~~v~~~Gef~vRG 53 (106)
T 3fpn_B 15 VSLRVGMEIERNALLRRLVDIQYDRNDIDFRRGTFRVRG 53 (106)
T ss_dssp EEEETTCBCCHHHHHHHHHHTTCEECTTCCCTTEEEEET
T ss_pred eEEECCCCcCHHHHHHHHHHcCCEECCccCCcEEEEEEC
Confidence 344455544345556679999999988888888888875
No 27
>1j3e_A SEQA protein; protein-DNA complex, recognition of hemimethylated DNA, mismatched DNA, replication; HET: 6MA; 2.50A {Escherichia coli} SCOP: d.228.1.1 PDB: 1iu3_C
Probab=23.46 E-value=16 Score=27.05 Aligned_cols=43 Identities=26% Similarity=0.268 Sum_probs=32.5
Q ss_pred cccceeeeeEEEecCCCc-hhhhHHHHHHHcCCCccccccceee
Q psy17574 27 RKAILETDTYVITPTNTN-FQDLVPVALQRLGYSKENFYSAKGY 69 (143)
Q Consensus 27 ~~~~~e~dsyvIVp~~t~-f~qLV~tAL~~LGYS~~~A~~AkG~ 69 (143)
.+.+-.+.=+||--.||. =..+++.+++.+||+.+.+....|.
T Consensus 71 PK~Ip~TpfWViTN~NT~rKr~ml~~vm~~mg~~~~lie~v~~~ 114 (115)
T 1j3e_A 71 PKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGT 114 (115)
T ss_dssp CEECTTSSCEECCCSCHHHHHHHHHHHHHHTTCCHHHHHHHHTT
T ss_pred CCcCCCCCeeeeecCChHHHHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 344556777888877776 4678999999999999887665554
No 28
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=22.62 E-value=43 Score=21.30 Aligned_cols=19 Identities=11% Similarity=0.142 Sum_probs=13.2
Q ss_pred hhhHHHHHHHcCCCccccc
Q psy17574 46 QDLVPVALQRLGYSKENFY 64 (143)
Q Consensus 46 ~qLV~tAL~~LGYS~~~A~ 64 (143)
.+-|..|..+|||..+..+
T Consensus 35 ~~rI~~aa~~lgY~pn~~a 53 (65)
T 1uxc_A 35 VEKVMAVVREHNYHPNAVA 53 (65)
T ss_dssp HHHHHHHHHHHTCCCC---
T ss_pred HHHHHHHHHHhCCCccHHH
Confidence 4678888999999875544
No 29
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=22.59 E-value=2.2e+02 Score=20.45 Aligned_cols=67 Identities=16% Similarity=0.289 Sum_probs=44.4
Q ss_pred EEEeeecCcccccccccccccceeeeeEEEecCCCchhhhHHHHHHHcCCCccccccceeeEEeccccccccccccCCCc
Q psy17574 9 CVVEAVYSVHHWKSAKNSRKAILETDTYVITPTNTNFQDLVPVALQRLGYSKENFYSAKGYVGIKNWKPISISKISENPA 88 (143)
Q Consensus 9 CVVE~~~~~~~~~~~~~~~~~~~e~dsyvIVp~~t~f~qLV~tAL~~LGYS~~~A~~AkG~I~V~nWkPLp~~~Itd~p~ 88 (143)
.|||.... +.-+.....-| +||.+..|.|++...=.+|.-+.+.|. -+-|+| . +| .++
T Consensus 33 VIvE~~~~---------~~~P~ldk~Kf-lVp~~~tv~qf~~~iRkrl~l~~~~al----Fl~Vn~-~-~p------~~~ 90 (118)
T 3rui_B 33 VICEKAEK---------SDIPEIDKRKY-LVPADLTVGQFVYVIRKRIMLPPEKAI----FIFVND-T-LP------PTA 90 (118)
T ss_dssp EEEEECTT---------CCSCCCSCCEE-EEETTSBHHHHHHHHHHHTTCCTTCCE----EEEBTT-B-CC------CTT
T ss_pred EEEEeCCC---------CCCCccccceE-EcCCCCCHHHHHHHHHHHhCcCCCccE----EEEECC-c-cC------Ccc
Confidence 47788642 12333444444 599999999999999999988764433 255666 2 33 467
Q ss_pred CcHHHHhhh
Q psy17574 89 TTVGDILGE 97 (143)
Q Consensus 89 ~TVgd~L~e 97 (143)
+|+|++-.+
T Consensus 91 ~~m~~lY~~ 99 (118)
T 3rui_B 91 ALMSAIYQE 99 (118)
T ss_dssp SBHHHHHHH
T ss_pred chHHHHHHH
Confidence 788887654
No 30
>1lrr_A SEQA protein; protein-DNA complex, replication, methylated GATC, replication inhibitor/DNA complex; HET: 6MA; 2.65A {Escherichia coli} SCOP: d.228.1.1
Probab=22.16 E-value=18 Score=27.43 Aligned_cols=42 Identities=26% Similarity=0.281 Sum_probs=32.3
Q ss_pred ccceeeeeEEEecCCCc-hhhhHHHHHHHcCCCccccccceee
Q psy17574 28 KAILETDTYVITPTNTN-FQDLVPVALQRLGYSKENFYSAKGY 69 (143)
Q Consensus 28 ~~~~e~dsyvIVp~~t~-f~qLV~tAL~~LGYS~~~A~~AkG~ 69 (143)
+.+-.+.=|||--.||. =..+++.+|+.+||+.+.+....|.
T Consensus 88 K~Ip~TpfWViTN~NT~rKr~ml~~vm~~mg~~~~lie~V~~~ 130 (131)
T 1lrr_A 88 KHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGT 130 (131)
T ss_dssp EECTTSSCEECCCCCHHHHHHHHHHHHHHTTCCHHHHHHHHTT
T ss_pred CcCCCCCeEEEecCChHHHHHHHHHHHHHhCCCHHHHHHHHhc
Confidence 44556677888877776 4678999999999999887766654
No 31
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=21.70 E-value=20 Score=22.87 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=14.6
Q ss_pred HHHHHcCCCcccccccee
Q psy17574 51 VALQRLGYSKENFYSAKG 68 (143)
Q Consensus 51 tAL~~LGYS~~~A~~AkG 68 (143)
+.|...||+.+.+.+|=|
T Consensus 9 ~~L~s~Gf~~~~~~rAL~ 26 (46)
T 2oo9_A 9 ENLMSQGYSYQDIQKALV 26 (46)
T ss_dssp HHHHHTTBCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 458899999999888754
No 32
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=21.42 E-value=67 Score=23.67 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=33.8
Q ss_pred eeeEEEecCCCchhhhHHHHH-HHcCCCccccccceeeEEeccc
Q psy17574 33 TDTYVITPTNTNFQDLVPVAL-QRLGYSKENFYSAKGYVGIKNW 75 (143)
Q Consensus 33 ~dsyvIVp~~t~f~qLV~tAL-~~LGYS~~~A~~AkG~I~V~nW 75 (143)
.+.+|.+-+...|.+-|..+| .++|++.+ ...+.|.+.+-+|
T Consensus 205 ~~~~vy~CGp~~m~~~v~~~l~~~~G~~~~-~i~~~~~~~~E~~ 247 (248)
T 1fdr_A 205 ETSHVMLCGNPQMVRDTQQLLKETRQMTKH-LRRRPGHMTAEHY 247 (248)
T ss_dssp TTEEEEEEECHHHHHHHHHHHHHHHCCCBC-BTTBCCSEEEEEC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHcCCChH-HcCCCccEEEEec
Confidence 356788888889999999999 99999984 4567788777554
Done!