RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17574
         (143 letters)



>d1j3ea_ d.228.1.1 (A:) Replication modulator SeqA, C-terminal
           DNA-binding domain {Escherichia coli [TaxId: 562]}
          Length = 115

 Score = 26.7 bits (59), Expect = 0.55
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 28  KAILETDTYVITPTNTNF-QDLVPVALQRLGYSKE 61
           K +  T  +VIT TNT     ++   +Q + +  E
Sbjct: 72  KHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAE 106


>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens
           [TaxId: 358]}
          Length = 295

 Score = 26.5 bits (57), Expect = 1.2
 Identities = 6/21 (28%), Positives = 9/21 (42%)

Query: 98  LTTVATLRIKIFRTRPCILAE 118
           L TV     ++    P +L E
Sbjct: 1   LATVFPFAGRVLDETPMLLGE 21


>d1dkia_ d.3.1.1 (A:) Streptococcal pyrogenic exotoxin B
          {Streptococcus pyogenes [TaxId: 1314]}
          Length = 335

 Score = 25.8 bits (56), Expect = 2.4
 Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 8/65 (12%)

Query: 32 ETDTYVITPTNTNF-----QDLVPVALQRLGYSKENFYSAKGYVGIKNWKPISISKISEN 86
           ++ YV   +   F         P  L   GYS    +   G   I ++    + +I EN
Sbjct: 12 GSNMYVYNISTGGFVIVSGDKRSPEIL---GYSTSGSFDVNGKENIASFMESYVEQIKEN 68

Query: 87 PATTV 91
               
Sbjct: 69 KKLDS 73


>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS)
           {Thermus thermophilus [TaxId: 274]}
          Length = 126

 Score = 23.5 bits (50), Expect = 8.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 111 TRPCILAEMKDKLLRLLLVQSQTQIIASG 139
             P + A    + LRL LVQS  + +A+G
Sbjct: 86  ATPVLTAPEGLRELRLSLVQSLQRTLATG 114


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0418    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 506,691
Number of extensions: 20980
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 6
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)