BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17575
(832 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QRU|A Chain A, Glutaminyl-Trna Synthetase Mutant I129t Complexed With
Glutamine Transfer Rna
Length = 553
Score = 424 bits (1090), Expect = e-118, Method: Compositional matrix adjust.
Identities = 234/532 (43%), Positives = 321/532 (60%), Gaps = 28/532 (5%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
V TRFPPEPNG LHIGHAK+I +NFG A + G C LR+DDTNP KE+ ++ IK+ V+
Sbjct: 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVE 86
Query: 380 WLGYK-PYQITHSSDYFHQLYEWAVKLIKKGLAYV---CHQKSDEMKGFNPLP---SPWR 432
WLG+ + +SSDYF QL+ +A++LI KGLAYV +++ E +G P SP+R
Sbjct: 87 WLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQTREYRGTLTQPGKNSPYR 146
Query: 433 ERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQDPVAYRIKFLPHHRTGDSWC 489
+R VEEN+ LFE M+ G +EG+A LR KI + +DPV YRIKF HH+TG+ WC
Sbjct: 147 DRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWC 206
Query: 490 IYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC-PVQWEYGRLNVNYT 548
IYP YD+THC+ D++E ITHSLCT EFQ R Y W+ + + I P Q+E+ RLN+ YT
Sbjct: 207 IYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYT 266
Query: 549 VVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNM 608
V+SKRK+ L+ + V WDDPR+ T++ LRRRG+ +I +FC R+GVT +
Sbjct: 267 VMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMAS 326
Query: 609 LEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRT 668
LE+ +RE LN+ APR M VIDP+ L I N+ T+P+ PN GS + F
Sbjct: 327 LESCIREDLNENAPRAMAVIDPVKLVIENYQ--GEGEMVTMPNHPNKPEMGSRQVPFSGE 384
Query: 669 IYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSI-------DVK 721
I+I+++DF+ K Y+RL G+ V LR A V++ ++V G IT+I +
Sbjct: 385 IWIDRADFREEANKQYKRLVLGKEVRLRNA-YVIKAERVEKDAEGNITTIFCTYDADTLS 443
Query: 722 ATPVDVDNKPKAFIHWV--ARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKV 779
P D K K IHWV A + +E+RLY LF NP + +LS INP+SL +
Sbjct: 444 KDPAD-GRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNP----GAADDFLSVINPESLVI 498
Query: 780 SIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGK 831
G+A+ FQFER G+F +D + KPV N TV L++ K
Sbjct: 499 KQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAK 550
>pdb|1QRS|A Chain A, Glutaminyl-Trna Synthetase Mutant D235n Complexed With
Glutamine Transfer Rna
Length = 553
Score = 423 bits (1087), Expect = e-118, Method: Compositional matrix adjust.
Identities = 234/532 (43%), Positives = 321/532 (60%), Gaps = 28/532 (5%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
V TRFPPEPNG LHIGHAK+I +NFG A + G C LR+DDTNP KE+ ++ IK+ V+
Sbjct: 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVE 86
Query: 380 WLGYK-PYQITHSSDYFHQLYEWAVKLIKKGLAYV---CHQKSDEMKGFNPLP---SPWR 432
WLG+ + +SSDYF QL+ +A++LI KGLAYV ++ E +G P SP+R
Sbjct: 87 WLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYR 146
Query: 433 ERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQDPVAYRIKFLPHHRTGDSWC 489
+R VEEN+ LFE M+ G +EG+A LR KI + +DPV YRIKF HH+TG+ WC
Sbjct: 147 DRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWC 206
Query: 490 IYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC-PVQWEYGRLNVNYT 548
IYP YD+THC+ D++E ITHSLCT EFQ+ R Y W+ + + I P Q+E+ RLN+ YT
Sbjct: 207 IYPMYDFTHCISDALEGITHSLCTLEFQNNRRLYDWVLDNITIPVHPRQYEFSRLNLEYT 266
Query: 549 VVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNM 608
V+SKRK+ L+ + V WDDPR+ T++ LRRRG+ +I +FC R+GVT +
Sbjct: 267 VMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMAS 326
Query: 609 LEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRT 668
LE+ +RE LN+ APR M VIDP+ L I N+ T+P+ PN GS + F
Sbjct: 327 LESCIREDLNENAPRAMAVIDPVKLVIENYQ--GEGEMVTMPNHPNKPEMGSRQVPFSGE 384
Query: 669 IYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSI-------DVK 721
I+I+++DF+ K Y+RL G+ V LR A V++ ++V G IT+I +
Sbjct: 385 IWIDRADFREEANKQYKRLVLGKEVRLRNA-YVIKAERVEKDAEGNITTIFCTYDADTLS 443
Query: 722 ATPVDVDNKPKAFIHWV--ARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKV 779
P D K K IHWV A + +E+RLY LF NP + +LS INP+SL +
Sbjct: 444 KDPAD-GRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNP----GAADDFLSVINPESLVI 498
Query: 780 SIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGK 831
G+A+ FQFER G+F +D + KPV N TV L++ K
Sbjct: 499 KQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAK 550
>pdb|1QRT|A Chain A, Glutaminyl-Trna Synthetase Mutant D235g Complexed With
Glutamine Transfer Rna
Length = 553
Score = 423 bits (1087), Expect = e-118, Method: Compositional matrix adjust.
Identities = 234/532 (43%), Positives = 320/532 (60%), Gaps = 28/532 (5%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
V TRFPPEPNG LHIGHAK+I +NFG A + G C LR+DDTNP KE+ ++ IK+ V+
Sbjct: 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVE 86
Query: 380 WLGYK-PYQITHSSDYFHQLYEWAVKLIKKGLAYV---CHQKSDEMKGFNPLP---SPWR 432
WLG+ + +SSDYF QL+ +A++LI KGLAYV ++ E +G P SP+R
Sbjct: 87 WLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYR 146
Query: 433 ERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQDPVAYRIKFLPHHRTGDSWC 489
+R VEEN+ LFE M+ G +EG+A LR KI + +DPV YRIKF HH+TG+ WC
Sbjct: 147 DRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWC 206
Query: 490 IYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC-PVQWEYGRLNVNYT 548
IYP YD+THC+ D++E ITHSLCT EFQ R Y W+ + + I P Q+E+ RLN+ YT
Sbjct: 207 IYPMYDFTHCISDALEGITHSLCTLEFQGNRRLYDWVLDNITIPVHPRQYEFSRLNLEYT 266
Query: 549 VVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNM 608
V+SKRK+ L+ + V WDDPR+ T++ LRRRG+ +I +FC R+GVT +
Sbjct: 267 VMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMAS 326
Query: 609 LEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRT 668
LE+ +RE LN+ APR M VIDP+ L I N+ T+P+ PN GS + F
Sbjct: 327 LESCIREDLNENAPRAMAVIDPVKLVIENYQ--GEGEMVTMPNHPNKPEMGSRQVPFSGE 384
Query: 669 IYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSI-------DVK 721
I+I+++DF+ K Y+RL G+ V LR A V++ ++V G IT+I +
Sbjct: 385 IWIDRADFREEANKQYKRLVLGKEVRLRNA-YVIKAERVEKDAEGNITTIFCTYDADTLS 443
Query: 722 ATPVDVDNKPKAFIHWV--ARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKV 779
P D K K IHWV A + +E+RLY LF NP + +LS INP+SL +
Sbjct: 444 KDPAD-GRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNP----GAADDFLSVINPESLVI 498
Query: 780 SIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGK 831
G+A+ FQFER G+F +D + KPV N TV L++ K
Sbjct: 499 KQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAK 550
>pdb|1GSG|P Chain P, Structure Of E.Coli Glutaminyl-Trna Synthetase Complexed
With Trnagln And Atp At 2.8 Angstroms Resolution
pdb|1GTR|A Chain A, Structural Basis Of Anticodon Loop Recognition By
Glutaminyl-Trna Synthetase
pdb|1GTS|A Chain A, Structural Basis For Transfer Rna Aminoaceylation By
Escherichia Coli Glutaminyl-Trna Synthetase
pdb|1QTQ|A Chain A, Glutaminyl-Trna Synthetase Complexed With Trna And An
Amino Acid Analog
pdb|1ZJW|A Chain A, Glutaminyl-trna Synthetase Complexed To Glutamine And
2'deoxy A76 Glutamine Trna
Length = 553
Score = 422 bits (1086), Expect = e-118, Method: Compositional matrix adjust.
Identities = 234/532 (43%), Positives = 320/532 (60%), Gaps = 28/532 (5%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
V TRFPPEPNG LHIGHAK+I +NFG A + G C LR+DDTNP KE+ ++ IK+ V+
Sbjct: 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVE 86
Query: 380 WLGYK-PYQITHSSDYFHQLYEWAVKLIKKGLAYV---CHQKSDEMKGFNPLP---SPWR 432
WLG+ + +SSDYF QL+ +A++LI KGLAYV ++ E +G P SP+R
Sbjct: 87 WLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYR 146
Query: 433 ERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQDPVAYRIKFLPHHRTGDSWC 489
+R VEEN+ LFE M+ G +EG+A LR KI + +DPV YRIKF HH+TG+ WC
Sbjct: 147 DRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWC 206
Query: 490 IYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC-PVQWEYGRLNVNYT 548
IYP YD+THC+ D++E ITHSLCT EFQ R Y W+ + + I P Q+E+ RLN+ YT
Sbjct: 207 IYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYT 266
Query: 549 VVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNM 608
V+SKRK+ L+ + V WDDPR+ T++ LRRRG+ +I +FC R+GVT +
Sbjct: 267 VMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMAS 326
Query: 609 LEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRT 668
LE+ +RE LN+ APR M VIDP+ L I N+ T+P+ PN GS + F
Sbjct: 327 LESCIREDLNENAPRAMAVIDPVKLVIENYQ--GEGEMVTMPNHPNKPEMGSRQVPFSGE 384
Query: 669 IYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSI-------DVK 721
I+I+++DF+ K Y+RL G+ V LR A V++ ++V G IT+I +
Sbjct: 385 IWIDRADFREEANKQYKRLVLGKEVRLRNA-YVIKAERVEKDAEGNITTIFCTYDADTLS 443
Query: 722 ATPVDVDNKPKAFIHWV--ARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKV 779
P D K K IHWV A + +E+RLY LF NP + +LS INP+SL +
Sbjct: 444 KDPAD-GRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNP----GAADDFLSVINPESLVI 498
Query: 780 SIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGK 831
G+A+ FQFER G+F +D + KPV N TV L++ K
Sbjct: 499 KQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAK 550
>pdb|1O0B|A Chain A, Crystal Structure Of L-Glutamine And Ampcpp Bound To
Glutamine Aminoacyl Trna Synthetase
pdb|1O0C|A Chain A, Crystal Structure Of L-glutamate And Ampcpp Bound To
Glutamine Aminoacyl Trna Synthetase
Length = 554
Score = 422 bits (1086), Expect = e-118, Method: Compositional matrix adjust.
Identities = 234/532 (43%), Positives = 320/532 (60%), Gaps = 28/532 (5%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
V TRFPPEPNG LHIGHAK+I +NFG A + G C LR+DDTNP KE+ ++ IK+ V+
Sbjct: 28 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVE 87
Query: 380 WLGYK-PYQITHSSDYFHQLYEWAVKLIKKGLAYV---CHQKSDEMKGFNPLP---SPWR 432
WLG+ + +SSDYF QL+ +A++LI KGLAYV ++ E +G P SP+R
Sbjct: 88 WLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYR 147
Query: 433 ERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQDPVAYRIKFLPHHRTGDSWC 489
+R VEEN+ LFE M+ G +EG+A LR KI + +DPV YRIKF HH+TG+ WC
Sbjct: 148 DRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWC 207
Query: 490 IYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC-PVQWEYGRLNVNYT 548
IYP YD+THC+ D++E ITHSLCT EFQ R Y W+ + + I P Q+E+ RLN+ YT
Sbjct: 208 IYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYT 267
Query: 549 VVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNM 608
V+SKRK+ L+ + V WDDPR+ T++ LRRRG+ +I +FC R+GVT +
Sbjct: 268 VMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMAS 327
Query: 609 LEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRT 668
LE+ +RE LN+ APR M VIDP+ L I N+ T+P+ PN GS + F
Sbjct: 328 LESCIREDLNENAPRAMAVIDPVKLVIENYQ--GEGEMVTMPNHPNKPEMGSRQVPFSGE 385
Query: 669 IYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSI-------DVK 721
I+I+++DF+ K Y+RL G+ V LR A V++ ++V G IT+I +
Sbjct: 386 IWIDRADFREEANKQYKRLVLGKEVRLRNA-YVIKAERVEKDAEGNITTIFCTYDADTLS 444
Query: 722 ATPVDVDNKPKAFIHWV--ARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKV 779
P D K K IHWV A + +E+RLY LF NP + +LS INP+SL +
Sbjct: 445 KDPAD-GRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNP----GAADDFLSVINPESLVI 499
Query: 780 SIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGK 831
G+A+ FQFER G+F +D + KPV N TV L++ K
Sbjct: 500 KQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAK 551
>pdb|1EUQ|A Chain A, Crystal Structure Of Glutaminyl-Trna Synthetase Complexed
With A Trna- Gln Mutant And An Active-Site Inhibitor
pdb|1EUY|A Chain A, Glutaminyl-Trna Synthetase Complexed With A Trna Mutant
And An Active Site Inhibitor
pdb|1EXD|A Chain A, Crystal Structure Of A Tight-Binding Glutamine Trna Bound
To Glutamine Aminoacyl Trna Synthetase
Length = 548
Score = 422 bits (1084), Expect = e-118, Method: Compositional matrix adjust.
Identities = 233/528 (44%), Positives = 319/528 (60%), Gaps = 28/528 (5%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
V TRFPPEPNG LHIGHAK+I +NFG A + G C LR+DDTNP KE+ ++ IK+ V+
Sbjct: 28 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVE 87
Query: 380 WLGYK-PYQITHSSDYFHQLYEWAVKLIKKGLAYV---CHQKSDEMKGFNPLP---SPWR 432
WLG+ + +SSDYF QL+ +A++LI KGLAYV ++ E +G P SP+R
Sbjct: 88 WLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYR 147
Query: 433 ERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQDPVAYRIKFLPHHRTGDSWC 489
+R VEEN+ LFE M+ G +EG+A LR KI + +DPV YRIKF HH+TG+ WC
Sbjct: 148 DRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWC 207
Query: 490 IYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC-PVQWEYGRLNVNYT 548
IYP YD+THC+ D++E ITHSLCT EFQ R Y W+ + + I P Q+E+ RLN+ YT
Sbjct: 208 IYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYT 267
Query: 549 VVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNM 608
V+SKRK+ L+ + V WDDPR+ T++ LRRRG+ +I +FC R+GVT +
Sbjct: 268 VMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMAS 327
Query: 609 LEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRT 668
LE+ +RE LN+ APR M VIDP+ L I N+ T+P+ PN GS + F
Sbjct: 328 LESCIREDLNENAPRAMAVIDPVKLVIENYQ--GEGEMVTMPNHPNKPEMGSRQVPFSGE 385
Query: 669 IYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSI-------DVK 721
I+I+++DF+ K Y+RL G+ V LR A V++ ++V G IT+I +
Sbjct: 386 IWIDRADFREEANKQYKRLVLGKEVRLRNA-YVIKAERVEKDAEGNITTIFCTYDADTLS 444
Query: 722 ATPVDVDNKPKAFIHWV--ARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKV 779
P D K K IHWV A + +E+RLY LF NP + +LS INP+SL +
Sbjct: 445 KDPAD-GRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNP----GAADDFLSVINPESLVI 499
Query: 780 SIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKE 827
G+A+ FQFER G+F +D + KPV N TV L++
Sbjct: 500 KQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRD 547
>pdb|1NYL|A Chain A, Unliganded Glutaminyl-Trna Synthetase
Length = 539
Score = 422 bits (1084), Expect = e-118, Method: Compositional matrix adjust.
Identities = 233/528 (44%), Positives = 319/528 (60%), Gaps = 28/528 (5%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
V TRFPPEPNG LHIGHAK+I +NFG A + G C LR+DDTNP KE+ ++ IK+ V+
Sbjct: 20 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVE 79
Query: 380 WLGYK-PYQITHSSDYFHQLYEWAVKLIKKGLAYV---CHQKSDEMKGFNPLP---SPWR 432
WLG+ + +SSDYF QL+ +A++LI KGLAYV ++ E +G P SP+R
Sbjct: 80 WLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYR 139
Query: 433 ERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQDPVAYRIKFLPHHRTGDSWC 489
+R VEEN+ LFE M+ G +EG+A LR KI + +DPV YRIKF HH+TG+ WC
Sbjct: 140 DRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWC 199
Query: 490 IYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC-PVQWEYGRLNVNYT 548
IYP YD+THC+ D++E ITHSLCT EFQ R Y W+ + + I P Q+E+ RLN+ YT
Sbjct: 200 IYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYT 259
Query: 549 VVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNM 608
V+SKRK+ L+ + V WDDPR+ T++ LRRRG+ +I +FC R+GVT +
Sbjct: 260 VMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMAS 319
Query: 609 LEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRT 668
LE+ +RE LN+ APR M VIDP+ L I N+ T+P+ PN GS + F
Sbjct: 320 LESCIREDLNENAPRAMAVIDPVKLVIENYQ--GEGEMVTMPNHPNKPEMGSRQVPFSGE 377
Query: 669 IYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSI-------DVK 721
I+I+++DF+ K Y+RL G+ V LR A V++ ++V G IT+I +
Sbjct: 378 IWIDRADFREEANKQYKRLVLGKEVRLRNA-YVIKAERVEKDAEGNITTIFCTYDADTLS 436
Query: 722 ATPVDVDNKPKAFIHWV--ARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKV 779
P D K K IHWV A + +E+RLY LF NP + +LS INP+SL +
Sbjct: 437 KDPAD-GRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNP----GAADDFLSVINPESLVI 491
Query: 780 SIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKE 827
G+A+ FQFER G+F +D + KPV N TV L++
Sbjct: 492 KQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRD 539
>pdb|2RD2|A Chain A, Glutaminyl-Trna Synthetase Mutant C229r With Bound Analog
5'-O-[n-(L- Glutaminyl)-Sulfamoyl]adenosine
pdb|2RE8|A Chain A, Glutaminyl-Trna Synthetase Mutant C229r With Bound Analog
5'-O-[n-(L-Glutamyl)-Sulfamoyl]adenosine
Length = 556
Score = 417 bits (1073), Expect = e-117, Method: Compositional matrix adjust.
Identities = 232/528 (43%), Positives = 318/528 (60%), Gaps = 28/528 (5%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
V TRFPPEPNG LHIGHAK+I +NFG A + G C LR+DDTNP KE+ ++ IK+ V+
Sbjct: 28 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVE 87
Query: 380 WLGYK-PYQITHSSDYFHQLYEWAVKLIKKGLAYV---CHQKSDEMKGFNPLP---SPWR 432
WLG+ + +SSDYF QL+ +A++LI KGLAYV ++ E +G P SP+R
Sbjct: 88 WLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYR 147
Query: 433 ERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQDPVAYRIKFLPHHRTGDSWC 489
+R VEEN+ LFE M+ G +EG+A LR KI + +DPV YRIKF HH+TG+ WC
Sbjct: 148 DRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWC 207
Query: 490 IYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC-PVQWEYGRLNVNYT 548
IYP YD+THC+ D++E ITHSL T EFQ R Y W+ + + I P Q+E+ RLN+ YT
Sbjct: 208 IYPMYDFTHCISDALEGITHSLRTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYT 267
Query: 549 VVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNM 608
V+SKRK+ L+ + V WDDPR+ T++ LRRRG+ +I +FC R+GVT +
Sbjct: 268 VMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMAS 327
Query: 609 LEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRT 668
LE+ +RE LN+ APR M VIDP+ L I N+ T+P+ PN GS + F
Sbjct: 328 LESCIREDLNENAPRAMAVIDPVKLVIENYQ--GEGEMVTMPNHPNKPEMGSRQVPFSGE 385
Query: 669 IYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSI-------DVK 721
I+I+++DF+ K Y+RL G+ V LR A V++ ++V G IT+I +
Sbjct: 386 IWIDRADFREEANKQYKRLVLGKEVRLRNA-YVIKAERVEKDAEGNITTIFCTYDADTLS 444
Query: 722 ATPVDVDNKPKAFIHWV--ARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKV 779
P D K K IHWV A + +E+RLY LF NP + +LS INP+SL +
Sbjct: 445 KDPAD-GRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNP----GAADDFLSVINPESLVI 499
Query: 780 SIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKE 827
G+A+ FQFER G+F +D + KPV N TV L++
Sbjct: 500 KQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRD 547
>pdb|2HZ7|A Chain A, Crystal Structure Of The Glutaminyl-Trna Synthetase From
Deinococcus Radiodurans
Length = 851
Score = 341 bits (875), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 210/574 (36%), Positives = 295/574 (51%), Gaps = 67/574 (11%)
Query: 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMV 378
+V TRFPP+P+G H+GH A ++F A + G LR DDTNPE +++ I D +
Sbjct: 66 RVVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYVDSIADDL 125
Query: 379 QWLGYK-PYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNP------LPSPW 431
+WLG ++SDYF + Y +A +LI++G AYV +E+ PSP+
Sbjct: 126 KWLGLDWGEHFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPY 185
Query: 432 RERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGK---QDPVAYRIKFLPHHRTGDSW 488
R+R VEEN+ L MK G +GE LR KI L +DPV YRI PH RT D W
Sbjct: 186 RDRSVEENLDLLRRMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEW 245
Query: 489 CIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC-PVQWEYGRLNVNY 547
IYP YD+ H L D+IE +THS+C+ EF R+ Y WL L+ P Q+E+GR + Y
Sbjct: 246 HIYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNFDPRPHQYEFGRRGLEY 305
Query: 548 TVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPN 607
T+ SKRK+ +L++ V+ WDDPR+ TL A RR G PEA+ F A++GV+ V
Sbjct: 306 TITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDIA 365
Query: 608 MLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGS------- 660
+ E VR+ LN APRVM V+DP+ + + N D + ++P +P+D + S
Sbjct: 366 VYENAVRDDLNHRAPRVMAVLDPVKVTLTNLDG---EKTLSLPYWPHDVVRDSPDGLVGM 422
Query: 661 ------------HDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVN 708
D+ R +YIE+ DF KG++RL PG V LR AG ++ D
Sbjct: 423 PGGGRVAPEEAVRDVPLTRELYIERDDFSPAPPKGFKRLTPGGTVRLRGAG-IIRADDFG 481
Query: 709 TKCNGAITSIDVKATPVDVDNKPKAFIHWVA--RPISIEVRLYSTLFLHKNPE------- 759
T G +T I +AT + D K IHWV+ R + E RLY LF +PE
Sbjct: 482 TDEAGQVTHI--RATLLGEDAKAAGVIHWVSAERALPAEFRLYDRLFRVPHPEGENADVE 539
Query: 760 -----------------DTYQVPEGYLSDINPDSLKVSIGYADSGFVGVKPYDRFQFERV 802
+T V +G++ + PDSL+V GY + G R+QFER
Sbjct: 540 DDSAGPAEHEAEPGAGQETAPVSQGFMRYLTPDSLRVLRGYVEPSVAGDPADTRYQFERQ 599
Query: 803 GFFTVD-----RDSNINHKPVVNLTVSLKEDSGK 831
G+F D R + V ++LK+ GK
Sbjct: 600 GYFWRDPVELERVDSREDALVFGRIITLKDTWGK 633
>pdb|3AII|A Chain A, Archaeal Non-Discriminating Glutamyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus
Length = 553
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 137/508 (26%), Positives = 215/508 (42%), Gaps = 79/508 (15%)
Query: 318 GKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDM 377
G+V RF P P+G LHIGHA+A +N YA ++G LR +DT+P + + + + I
Sbjct: 95 GEVVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPAD 154
Query: 378 VQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMK--------------G 423
++WLG + + SD YE+ KLI++G AYVC + +E + G
Sbjct: 155 LEWLGVEWDETVIQSDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLG 214
Query: 424 FNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEE---GKQDPVAYRIKFLP 480
F WRE +FE + EG A +R+K L +D V+ RI
Sbjct: 215 FRENLQRWRE--------MFE------MKEGSAVVRVKTDLNHPNPAIRDWVSMRIVEAE 260
Query: 481 HHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEY 540
H RTG + +YP +++ + D + +TH L K+ + R +L L P Y
Sbjct: 261 HPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLGWEPPEFIHY 320
Query: 541 GRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGA 600
GRL ++ +S + I + WDDPRL TL A+ RRG PEAI K +GV A
Sbjct: 321 GRLKMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIA 380
Query: 601 QAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGS 660
+ +S + + R +L + A R DP+ L +V L + P P+ G+
Sbjct: 381 DSTMSWKKIYGLNRSILEEEARRYFFAADPVKLEVVG---LPGPVRVERPLHPDHPEIGN 437
Query: 661 HDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSIDV 720
++ +Y+ PG +G G + +D VN +G
Sbjct: 438 RVLELRGEVYL-----------------PGDDLG---EGPLRLIDAVNVIYSGGELRYHS 477
Query: 721 KATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVS 780
+ + + IHWV ++E + I PD+ +V
Sbjct: 478 EGIE-EARELGASMIHWVPAESALEAEV-----------------------IMPDASRVR 513
Query: 781 IGYADSGFVGVKPYDRFQFERVGFFTVD 808
G ++ ++ D Q ER GF +D
Sbjct: 514 -GVIEADASELEVDDVVQLERFGFARLD 540
>pdb|3TL4|X Chain X, Crystal Structure Of The Trna Binding Domain Of
Glutaminyl-Trna Synthetase From Saccharomyces Cerevisiae
Length = 187
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 104/187 (55%), Gaps = 10/187 (5%)
Query: 63 DSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQ---DCGSLLYHLAS 119
+ + F VG +KK KE +KN+ +S L + I+E +P Q +L+++LAS
Sbjct: 5 EELTQLFSQVGFEDKKVKEIVKNKKVSDSLYKLIKE----TPSDYQWNKSTRALVHNLAS 60
Query: 120 KIKSQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSE 179
+K L+V I++ L ++L+VDAA +YV ++ A + + GVG+ +T +
Sbjct: 61 FVKGTDLPKSELIVNGIINGDLKTSLQVDAAFKYVKANGEASTKXGXNENSGVGIEITED 120
Query: 180 DIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTL--LKWADGKYIKSEVDVQVLNLLG 237
+ V + ++++K +L +RY+ G + +V+ L LKWAD + K +D +VL LLG
Sbjct: 121 QVRNYVXQYIQENKERILTERYKLVPG-IFADVKNLKELKWADPRSFKPIIDQEVLKLLG 179
Query: 238 PKTEADL 244
PK E DL
Sbjct: 180 PKDERDL 186
>pdb|2CFO|A Chain A, Non-discriminating Glutamyl-trna Synthetase From
Thermosynechococcus Elongatus In Complex With Glu
pdb|2CFO|B Chain B, Non-discriminating Glutamyl-trna Synthetase From
Thermosynechococcus Elongatus In Complex With Glu
Length = 492
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
VR R P P G LHIG A+ N+ YA G LR +DT+ E+ ++ I + +Q
Sbjct: 2 VRVRLAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQ 61
Query: 380 WLGYK----PYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN 425
WLG PY + D + Q + L+ KGLAY C+ +E++
Sbjct: 62 WLGLTWDEGPYFQSDRLDLYRQAIQ---TLLDKGLAYYCYCTPEELEALR 108
>pdb|4GRI|A Chain A, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From
Borrelia Burgdorferi Bound To Glutamic Acid And Zinc
pdb|4GRI|B Chain B, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From
Borrelia Burgdorferi Bound To Glutamic Acid And Zinc
Length = 512
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 128/312 (41%), Gaps = 47/312 (15%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
R R+ P P G+ HIG + N+ +A + G LR +DT+ + + + ++
Sbjct: 25 TRVRYAPSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDTDQSRYSPEAENDLYSSLK 84
Query: 380 WLG------------YKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCH------QKSDEM 421
WLG Y PY + S + Q +A LI+ G AY C+ ++ ++
Sbjct: 85 WLGISFDEGPVVGGDYAPYVQSQRSAIYKQ---YAKYLIESGHAYYCYCSPERLERIKKI 141
Query: 422 KGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQ--DPVAYRIKFL 479
+ N +P P +R E ++N LI + + +R KI LE D + RI +
Sbjct: 142 QNINKMP-PGYDRHCRNLSN--EEVENALIKKIKPVVRFKIPLEGDTSFDDILLGRITWA 198
Query: 480 PHHRTGDSWCI----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALD---- 531
+ D + PTY + + D + ITH L +E+ S + L A
Sbjct: 199 NKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVLLYKAFKWKPP 258
Query: 532 IYCPVQWEYG----RLNVNYTVVSKRKIAK--LIEENIVN-------DWDDPRLFTLTAL 578
IYC + G +L+ + + R+ + + E I+N +DD R F
Sbjct: 259 IYCHLPMVMGNDGQKLSKRHGSTALRQFIEDGYLPEAIINYVTLLGWSYDDKREFFSKND 318
Query: 579 RRRGFPPEAINK 590
+ F E INK
Sbjct: 319 LEQFFSIEKINK 330
>pdb|2O5R|A Chain A, Crystal Structure Of Glutamyl-Trna Synthetase 1 (Ec
6.1.1.17) (Glutamate-Trna Ligase 1) (Glurs 1) (Tm1351)
From Thermotoga Maritima At 2.5 A Resolution
Length = 481
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 80/355 (22%), Positives = 136/355 (38%), Gaps = 72/355 (20%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
VR RF P P G LH+G A+ NF +A G LR +DT+ E+ E ++ + + ++
Sbjct: 14 VRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLXESLR 73
Query: 380 WLG------------YKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEM------ 421
WLG + PY+ + + + E A +L+K+G AY + +E+
Sbjct: 74 WLGLLWDEGPDVGGDHGPYRQSERVEIYR---EHAERLVKEGKAYYVYAYPEEIEEXREK 130
Query: 422 ------------KGFNPLPSPWRERPVEEN-----VKLFEAMKNGLIDEGEATLRMKITL 464
+ F +P R R EE V K+ ++++ ++ ++
Sbjct: 131 LLSEGKAPHYSQEXFEKFDTPERRREYEEKGLRPAVFFKXPRKDYVLND---VVKGEVVF 187
Query: 465 EEGK-QDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSY 523
+ G D V R L PTY++ + D + ITH + + S
Sbjct: 188 KTGAIGDFVIXRSNGL------------PTYNFACVVDDXLXEITHVIRGDDHLSNTLRQ 235
Query: 524 YWLCNALDIYCPVQWEYGR-LNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRG 582
L A + PV L + +SKR A +E A R G
Sbjct: 236 LALYEAFEKAPPVFAHVSTILGPDGKKLSKRHGATSVE----------------AFRDXG 279
Query: 583 FPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVN 637
+ PEA+ + A +G + + + E + L+ +P + DP L N
Sbjct: 280 YLPEALVNYLALLGWSHPEGKELLTLEELISSFSLDRLSPN-PAIFDPQKLKWXN 333
>pdb|3PNY|A Chain A, Structure Of Glutamyl-Trna Synthetase From Mycobacterium
Tuberculosis In Space Group P21
pdb|3PNY|B Chain B, Structure Of Glutamyl-Trna Synthetase From Mycobacterium
Tuberculosis In Space Group P21
Length = 505
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 120/310 (38%), Gaps = 61/310 (19%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
VR RF P P G H+G + N+ YA G R +DT+ +++ E+ + + D ++
Sbjct: 22 VRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALR 81
Query: 380 WLG------------YKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPL 427
WLG Y PY+ + ++ + + +L+ G AY +E++
Sbjct: 82 WLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVL---ARLLAAGEAYHAFSTPEEVEA---- 134
Query: 428 PSPWRERPVEENVK---------LFEAMKNGLIDEGE---ATLRM---KITLEEGKQDPV 472
R N K L +A + + EG LRM + + + PV
Sbjct: 135 ----RHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDDDLAWNDLVRGPV 190
Query: 473 AYRIKFLPH----HRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCN 528
+ +P +GD P Y + D++ ITH L ++ L
Sbjct: 191 TFAAGSVPDFALTRASGD-----PLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQ 245
Query: 529 ALDIYCPVQWEYGRLNVNYTVVSK--RKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPE 586
AL I V + TV+ + +K++K DP+ L A R RGF PE
Sbjct: 246 AL-IRIGVAERIPKFAHLPTVLGEGTKKLSK----------RDPQ-SNLFAHRDRGFIPE 293
Query: 587 AINKFCARMG 596
+ + A +G
Sbjct: 294 GLLNYLALLG 303
>pdb|2JA2|A Chain A, Mycobacterium Tuberculosis Glutamyl-Trna Synthetase
Length = 498
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 120/310 (38%), Gaps = 61/310 (19%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
VR RF P P G H+G + N+ YA G R +DT+ +++ E+ + + D ++
Sbjct: 7 VRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALR 66
Query: 380 WLG------------YKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPL 427
WLG Y PY+ + ++ + + +L+ G AY +E++
Sbjct: 67 WLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVL---ARLLAAGEAYHAFSTPEEVEA---- 119
Query: 428 PSPWRERPVEENVK---------LFEAMKNGLIDEGE---ATLRM---KITLEEGKQDPV 472
R N K L +A + + EG LRM + + + PV
Sbjct: 120 ----RHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDDDLAWNDLVRGPV 175
Query: 473 AYRIKFLPH----HRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCN 528
+ +P +GD P Y + D++ ITH L ++ L
Sbjct: 176 TFAAGSVPDFALTRASGD-----PLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQ 230
Query: 529 ALDIYCPVQWEYGRLNVNYTVVSK--RKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPE 586
AL I V + TV+ + +K++K DP+ L A R RGF PE
Sbjct: 231 AL-IRIGVAERIPKFAHLPTVLGEGTKKLSK----------RDPQ-SNLFAHRDRGFIPE 278
Query: 587 AINKFCARMG 596
+ + A +G
Sbjct: 279 GLLNYLALLG 288
>pdb|3PNV|A Chain A, V369m Mutant Of Glutamyl-Trna Synthetase From
Mycobacterium Tuberculosis
pdb|3PNV|B Chain B, V369m Mutant Of Glutamyl-Trna Synthetase From
Mycobacterium Tuberculosis
Length = 505
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 120/310 (38%), Gaps = 61/310 (19%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
VR RF P P G H+G + N+ YA G R +DT+ +++ E+ + + D ++
Sbjct: 22 VRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALR 81
Query: 380 WLG------------YKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPL 427
WLG Y PY+ + ++ + + +L+ G AY +E++
Sbjct: 82 WLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVL---ARLLAAGEAYHAFSTPEEVEA---- 134
Query: 428 PSPWRERPVEENVK---------LFEAMKNGLIDEGE---ATLRM---KITLEEGKQDPV 472
R N K L +A + + EG LRM + + + PV
Sbjct: 135 ----RHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDDDLAWNDLVRGPV 190
Query: 473 AYRIKFLPH----HRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCN 528
+ +P +GD P Y + D++ ITH L ++ L
Sbjct: 191 TFAAGSVPDFALTRASGD-----PLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQ 245
Query: 529 ALDIYCPVQWEYGRLNVNYTVVSK--RKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPE 586
AL I V + TV+ + +K++K DP+ L A R RGF PE
Sbjct: 246 AL-IRIGVAERIPKFAHLPTVLGEGTKKLSK----------RDPQ-SNLFAHRDRGFIPE 293
Query: 587 AINKFCARMG 596
+ + A +G
Sbjct: 294 GLLNYLALLG 303
>pdb|4G6Z|A Chain A, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From
Burkholderia Thailandensis Bound To L-Glutamate
Length = 490
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
VRTRF P P G +H+G+ ++ + +A G LR +DT+ E+ ++ I + +
Sbjct: 26 VRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEGMA 85
Query: 380 WLGYK----PYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERP 435
WLG PY D + ++ ++ +KGL Y + ++E+ E+P
Sbjct: 86 WLGLDYDEGPYYQMQRMDRYREVL---AQMQEKGLVYPXYMSTEELDALRERQRAAGEKP 142
>pdb|3AL0|C Chain C, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 592
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 115/302 (38%), Gaps = 66/302 (21%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
VR RF P P G LH+G A+ N+ +A G LR +DT+ E+ ++ I + ++
Sbjct: 130 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLR 189
Query: 380 WLG------------YKPYQITHSSDYFHQLYEWAVKLIKKGLA-YVCHQKSD---EMKG 423
W G + PY+ + + + E+A KL++ A YV + K D E+
Sbjct: 190 WCGLDWDEGPDIGGDFGPYRQSERLEIYR---EYAEKLVEDKRAYYVVYDKEDPSKELFT 246
Query: 424 FNPLPSPWRER--PVEENVKL------FEAMKNGLIDEGEATLRMKITLEEGKQDPVAYR 475
P ++E+ PV K+ FE + G ++ +TL I ++
Sbjct: 247 TYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMKSNG------- 299
Query: 476 IKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCP 535
+PTY++ + D + I+H ++ S + A P
Sbjct: 300 ---------------FPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAP 344
Query: 536 VQWEYGR-LNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCAR 594
V L + T +SKR A +E RR G A+ + A
Sbjct: 345 VFMHIPLILGSDRTPLSKRHGATSVEH----------------FRREGILSRALMNYLAL 388
Query: 595 MG 596
+G
Sbjct: 389 LG 390
>pdb|3AKZ|B Chain B, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|D Chain D, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|C Chain C, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|A Chain A, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
Length = 487
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 115/302 (38%), Gaps = 66/302 (21%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
VR RF P P G LH+G A+ N+ +A G LR +DT+ E+ ++ I + ++
Sbjct: 25 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLR 84
Query: 380 WLG------------YKPYQITHSSDYFHQLYEWAVKLIKKGLA-YVCHQKSD---EMKG 423
W G + PY+ + + + E+A KL++ A YV + K D E+
Sbjct: 85 WCGLDWDEGPDIGGDFGPYRQSERLEIYR---EYAEKLVEDKRAYYVVYDKEDPSKELFT 141
Query: 424 FNPLPSPWRER--PVEENVKL------FEAMKNGLIDEGEATLRMKITLEEGKQDPVAYR 475
P ++E+ PV K+ FE + G ++ +TL I ++
Sbjct: 142 TYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMKSNG------- 194
Query: 476 IKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCP 535
+PTY++ + D + I+H ++ S + A P
Sbjct: 195 ---------------FPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAP 239
Query: 536 VQWEYGR-LNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCAR 594
V L + T +SKR A +E RR G A+ + A
Sbjct: 240 VFMHIPLILGSDRTPLSKRHGATSVEH----------------FRREGILSRALMNYLAL 283
Query: 595 MG 596
+G
Sbjct: 284 LG 285
>pdb|3AFH|A Chain A, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With A Glutamyl-Amp
Analog
Length = 488
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 115/302 (38%), Gaps = 66/302 (21%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
VR RF P P G LH+G A+ N+ +A G LR +DT+ E+ ++ I + ++
Sbjct: 26 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLR 85
Query: 380 WLG------------YKPYQITHSSDYFHQLYEWAVKLIKKGLA-YVCHQKSD---EMKG 423
W G + PY+ + + + E+A KL++ A YV + K D E+
Sbjct: 86 WCGLDWDEGPDIGGDFGPYRQSERLEIYR---EYAEKLVEDKRAYYVVYDKEDPSKELFT 142
Query: 424 FNPLPSPWRER--PVEENVKL------FEAMKNGLIDEGEATLRMKITLEEGKQDPVAYR 475
P ++E+ PV K+ FE + G ++ +TL I ++
Sbjct: 143 TYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMKSNG------- 195
Query: 476 IKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCP 535
+PTY++ + D + I+H ++ S + A P
Sbjct: 196 ---------------FPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAP 240
Query: 536 VQWEYGR-LNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCAR 594
V L + T +SKR A +E RR G A+ + A
Sbjct: 241 VFMHIPLILGSDRTPLSKRHGATSVEH----------------FRREGILSRALMNYLAL 284
Query: 595 MG 596
+G
Sbjct: 285 LG 286
>pdb|1J09|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Atp And Glu
pdb|1N75|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Atp.
pdb|1N77|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Atp.
pdb|1N77|B Chain B, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Atp.
pdb|1N78|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Glutamol-Amp.
pdb|1N78|B Chain B, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Glutamol-Amp.
pdb|2CUZ|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With L-Glutamate
pdb|2CV0|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And L-Glutamate
pdb|2CV0|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And L-Glutamate
pdb|2CV1|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu), Atp, And An Analog Of
L-Glutamate: A Quaternary Complex
pdb|2CV1|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu), Atp, And An Analog Of
L-Glutamate: A Quaternary Complex
pdb|2CV2|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And An Enzyme Inhibitor, Glu-Ams
pdb|2CV2|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And An Enzyme Inhibitor, Glu-Ams
pdb|2DXI|A Chain A, 2.2 A Crystal Structure Of Glutamyl-Trna Synthetase From
Thermus Thermophilus Complexed With Trna(Glu), Atp, And
L- Glutamol
pdb|2DXI|B Chain B, 2.2 A Crystal Structure Of Glutamyl-Trna Synthetase From
Thermus Thermophilus Complexed With Trna(Glu), Atp, And
L- Glutamol
Length = 468
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/308 (22%), Positives = 118/308 (38%), Gaps = 62/308 (20%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEK----EEEKFFTGIK 375
V TR P P G H+G A N+ +A + G +R +DT+ + EE+ +K
Sbjct: 2 VVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALK 61
Query: 376 DMVQWLGYK---------PYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNP 426
WLG P+ S+ ++A +L+K+G AY + +E++
Sbjct: 62 ----WLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRK 117
Query: 427 LPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKI------TLEEGKQDPVAYRIKFLP 480
+ R N+ EA + E +R+K+ +++ + V Y + +P
Sbjct: 118 EKGGYDGR--ARNIPPEEAEERARRGEPH-VIRLKVPRPGTTEVKDELRGVVVYDNQEIP 174
Query: 481 HHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNA---LDIYCPVQ 537
S YPTY + + D + +T + +E WL + + +Y
Sbjct: 175 DVVLLKS-DGYPTYHLANVVDDHLMGVTDVIRAEE---------WLVSTPIHVLLYRAFG 224
Query: 538 WEYGRL-------NVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINK 590
WE R N + T +SKRK + DW + GF PEA+
Sbjct: 225 WEAPRFYHMPLLRNPDKTKISKRK------SHTSLDW----------YKAEGFLPEALRN 268
Query: 591 FCARMGVT 598
+ MG +
Sbjct: 269 YLCLMGFS 276
>pdb|1G59|A Chain A, Glutamyl-Trna Synthetase Complexed With Trna(Glu).
pdb|1G59|C Chain C, Glutamyl-Trna Synthetase Complexed With Trna(Glu).
pdb|1GLN|A Chain A, Architectures Of Class-Defining And Specific Domains Of
Glutamyl-Trna Synthetase
Length = 468
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 69/308 (22%), Positives = 117/308 (37%), Gaps = 62/308 (20%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEK----EEEKFFTGIK 375
V TR P P G H+G A N+ +A + G +R +DT+ + EE+ +K
Sbjct: 2 VVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALK 61
Query: 376 DMVQWLGYK---------PYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNP 426
WLG P S+ ++A +L+K+G AY + +E++
Sbjct: 62 ----WLGLSYDEGPDVAAPTGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRK 117
Query: 427 LPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKI------TLEEGKQDPVAYRIKFLP 480
+ R N+ EA + E +R+K+ +++ + V Y + +P
Sbjct: 118 EKGGYDGR--ARNIPPEEAEERARRGEPH-VIRLKVPRPGTTEVKDELRGVVVYDNQEIP 174
Query: 481 HHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNA---LDIYCPVQ 537
S YPTY + + D + +T + +E WL + + +Y
Sbjct: 175 DVVLLKS-DGYPTYHLANVVDDHLMGVTDVIRAEE---------WLVSTPIHVLLYRAFG 224
Query: 538 WEYGRL-------NVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINK 590
WE R N + T +SKRK + DW + GF PEA+
Sbjct: 225 WEAPRFYHMPLLRNPDKTKISKRK------SHTSLDW----------YKAEGFLPEALRN 268
Query: 591 FCARMGVT 598
+ MG +
Sbjct: 269 YLCLMGFS 276
>pdb|1NZJ|A Chain A, Crystal Structure And Activity Studies Of Escherichia Coli
Yadb Orf
pdb|4A91|A Chain A, Crystal Structure Of The Glutamyl-Queuosine Trnaasp
Synthetase From E.Coli Complexed With L-Glutamate
Length = 298
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 323 RFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKE----EEKFFTGIKDM- 377
RF P P+G LH G A ++ A A G +R +D +P +E E ++
Sbjct: 9 RFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYG 68
Query: 378 VQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVC 414
+ W G +Q + D + + W L ++GL+Y C
Sbjct: 69 LHWDGDVLWQ-SQRHDAYREALAW---LHEQGLSYYC 101
>pdb|2FUG|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|L Chain L, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|U Chain U, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|L Chain L, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|U Chain U, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|3 Chain 3, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|C Chain C, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|3 Chain 3, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|3 Chain 3, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|D Chain D, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 783
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 34 DGKPLDNLLFCQKVQNEPKVVSNIMTEIADSMISAFLSVGLNEKKA---KETLKNETLST 90
DGKPL N ++Q +PK+ ++ +T +AD M+ LS + E +A + TL N L
Sbjct: 60 DGKPLLNEKGEPEIQWQPKLAASCVTAVADGMVVDTLSDVVREAQAGMVEFTLLNHPLDC 119
Query: 91 YLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQSSIHLPLLVKY 135
K LQD ++ Y L K + + LP+ ++
Sbjct: 120 ------PTCDKGGACELQD-RTVEYGLYEKYYQKGPLELPVYTRF 157
>pdb|2ZTJ|A Chain A, Crystal Structure Of Homocitrate Synthase From Thermus
Thermophilus Complexed With Alpha-Ketoglutarate
pdb|2ZTK|A Chain A, Crystal Structure Of Homocitrate Synthase From Thermus
Thermophilus Complexed With Homocitrate
pdb|2ZYF|A Chain A, Crystal Structure Of Homocitrate Synthase From Thermus
Thermophilus Complexed With Magnesuim Ion And
Alpha-Ketoglutarate
Length = 382
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 586 EAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRV 624
EA+ + R+G+ V +P + A+VREV PRV
Sbjct: 152 EAVAPYVDRVGLADTVGVATPRQVYALVREVRRVVGPRV 190
>pdb|3A9I|A Chain A, Crystal Structure Of Homocitrate Synthase From Thermus
Thermophilus Complexed With Lys
Length = 376
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 586 EAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRV 624
EA+ + R+G+ V +P + A+VREV PRV
Sbjct: 152 EAVAPYVDRVGLADTVGVATPRQVYALVREVRRVVGPRV 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,987,073
Number of Sequences: 62578
Number of extensions: 1078690
Number of successful extensions: 2414
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2308
Number of HSP's gapped (non-prelim): 46
length of query: 832
length of database: 14,973,337
effective HSP length: 107
effective length of query: 725
effective length of database: 8,277,491
effective search space: 6001180975
effective search space used: 6001180975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)