Query psy17575
Match_columns 832
No_of_seqs 383 out of 2196
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 17:03:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17575.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17575hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1148|consensus 100.0 2E-226 4E-231 1849.0 54.2 753 62-832 3-764 (764)
2 PLN02859 glutamine-tRNA ligase 100.0 5E-214 1E-218 1844.0 74.8 755 62-832 5-786 (788)
3 PTZ00437 glutaminyl-tRNA synth 100.0 8E-152 2E-156 1287.5 54.1 535 285-832 20-563 (574)
4 PRK05347 glutaminyl-tRNA synth 100.0 1E-149 2E-154 1271.7 55.0 520 306-832 15-554 (554)
5 PRK14703 glutaminyl-tRNA synth 100.0 1E-145 3E-150 1281.6 53.3 520 306-831 17-558 (771)
6 TIGR00440 glnS glutaminyl-tRNA 100.0 1E-143 3E-148 1220.1 49.6 502 320-829 1-522 (522)
7 PLN03233 putative glutamate-tR 100.0 4E-139 9E-144 1182.3 49.1 492 316-828 8-511 (523)
8 PTZ00402 glutamyl-tRNA synthet 100.0 3E-136 7E-141 1168.3 51.9 496 316-828 49-554 (601)
9 PLN02907 glutamate-tRNA ligase 100.0 4E-134 1E-138 1186.6 52.5 493 317-824 211-714 (722)
10 KOG1147|consensus 100.0 7E-122 1E-126 1009.4 42.9 497 316-827 197-704 (712)
11 PRK04156 gltX glutamyl-tRNA sy 100.0 2E-120 4E-125 1040.8 48.4 449 317-814 99-559 (567)
12 TIGR00463 gltX_arch glutamyl-t 100.0 2E-120 4E-125 1039.6 48.1 459 317-819 91-557 (560)
13 COG0008 GlnS Glutamyl- and glu 100.0 9.9E-92 2.1E-96 791.4 -0.5 443 320-808 10-472 (472)
14 cd00807 GlnRS_core catalytic c 100.0 1.1E-75 2.4E-80 609.5 24.3 238 319-623 1-238 (238)
15 PRK12410 glutamylglutaminyl-tR 100.0 2.3E-73 5E-78 636.6 20.2 286 321-640 1-307 (433)
16 PLN02627 glutamyl-tRNA synthet 100.0 7.3E-73 1.6E-77 642.4 23.0 296 312-640 38-367 (535)
17 PF00749 tRNA-synt_1c: tRNA sy 100.0 5.2E-74 1.1E-78 623.4 4.9 296 319-635 1-314 (314)
18 cd09287 GluRS_non_core catalyt 100.0 2.3E-71 5E-76 578.8 24.0 238 319-623 1-240 (240)
19 PRK12558 glutamyl-tRNA synthet 100.0 9.7E-71 2.1E-75 617.9 21.1 289 319-640 2-313 (445)
20 KOG1149|consensus 100.0 8.4E-70 1.8E-74 588.6 18.0 291 318-640 32-355 (524)
21 PRK05710 glutamyl-Q tRNA(Asp) 100.0 8.4E-68 1.8E-72 568.4 22.0 267 317-621 3-293 (299)
22 TIGR03838 queuosine_YadB gluta 100.0 6.1E-68 1.3E-72 563.6 19.8 251 320-607 1-269 (272)
23 PRK14895 gltX glutamyl-tRNA sy 100.0 8.8E-68 1.9E-72 600.0 18.6 288 317-640 2-313 (513)
24 PRK01406 gltX glutamyl-tRNA sy 100.0 1.4E-67 3E-72 600.4 18.4 292 317-640 2-324 (476)
25 TIGR00464 gltX_bact glutamyl-t 100.0 3E-66 6.5E-71 588.9 20.1 290 319-640 1-315 (470)
26 cd00418 GlxRS_core catalytic c 100.0 9E-61 2E-65 497.2 19.7 220 319-638 1-225 (230)
27 cd00808 GluRS_core catalytic c 100.0 2.6E-56 5.7E-61 466.8 14.8 221 319-638 1-234 (239)
28 PF04558 tRNA_synt_1c_R1: Glut 100.0 6E-49 1.3E-53 389.9 14.5 160 62-222 3-164 (164)
29 PF03950 tRNA-synt_1c_C: tRNA 100.0 2.1E-43 4.5E-48 354.4 12.5 169 621-808 1-174 (174)
30 PRK00260 cysS cysteinyl-tRNA s 99.6 1.2E-15 2.6E-20 174.9 15.6 265 317-614 21-314 (463)
31 TIGR00435 cysS cysteinyl-tRNA 99.6 1.9E-15 4.2E-20 173.3 15.9 259 323-614 26-313 (465)
32 PF01406 tRNA-synt_1e: tRNA sy 99.6 2.5E-15 5.3E-20 162.0 11.0 256 325-612 15-298 (300)
33 COG0215 CysS Cysteinyl-tRNA sy 99.6 5.3E-15 1.1E-19 166.7 10.8 258 325-613 29-315 (464)
34 cd00671 ArgRS_core catalytic c 99.6 3.7E-15 8E-20 154.3 8.5 176 324-554 7-211 (212)
35 PF04557 tRNA_synt_1c_R2: Glut 99.5 1.5E-15 3.2E-20 135.8 2.0 83 223-312 1-84 (84)
36 PLN02946 cysteine-tRNA ligase 99.5 6.3E-14 1.4E-18 162.7 10.3 257 325-614 87-371 (557)
37 PRK12418 cysteinyl-tRNA synthe 99.5 1.4E-13 3.1E-18 153.9 11.0 264 324-614 15-310 (384)
38 PRK14536 cysS cysteinyl-tRNA s 99.5 4.7E-13 1E-17 153.8 14.7 254 325-614 30-328 (490)
39 PRK14534 cysS cysteinyl-tRNA s 99.5 4.1E-13 8.8E-18 153.8 14.0 253 325-613 28-327 (481)
40 TIGR03447 mycothiol_MshC cyste 99.5 1.8E-13 4E-18 153.9 10.1 260 325-613 43-336 (411)
41 PRK14535 cysS cysteinyl-tRNA s 99.4 6.2E-12 1.3E-16 147.6 15.0 253 324-613 254-555 (699)
42 PTZ00399 cysteinyl-tRNA-synthe 99.3 7.1E-12 1.5E-16 149.0 11.9 266 325-614 67-363 (651)
43 PRK01611 argS arginyl-tRNA syn 99.3 3.7E-12 8.1E-17 147.9 8.9 229 317-614 110-387 (507)
44 cd00802 class_I_aaRS_core cata 99.3 1E-12 2.2E-17 127.6 3.1 133 321-554 1-143 (143)
45 PRK11893 methionyl-tRNA synthe 99.3 6.4E-11 1.4E-15 137.2 15.6 277 321-615 5-349 (511)
46 TIGR00398 metG methionyl-tRNA 99.0 8.8E-10 1.9E-14 128.6 10.6 94 320-413 2-115 (530)
47 cd00814 MetRS_core catalytic c 98.9 5.9E-09 1.3E-13 114.5 9.1 93 321-413 4-116 (319)
48 PLN02224 methionine-tRNA ligas 98.8 4.4E-08 9.6E-13 116.3 15.0 280 320-619 72-421 (616)
49 cd00668 Ile_Leu_Val_MetRS_core 98.8 1.5E-08 3.3E-13 110.7 9.8 249 325-600 8-308 (312)
50 KOG2007|consensus 98.8 2.9E-08 6.4E-13 112.0 11.6 243 325-599 62-339 (586)
51 PRK12267 methionyl-tRNA synthe 98.6 1.4E-07 3E-12 113.0 12.6 95 320-414 7-121 (648)
52 PRK00133 metG methionyl-tRNA s 98.6 4.4E-07 9.6E-12 109.3 15.6 94 320-413 5-118 (673)
53 PRK12268 methionyl-tRNA synthe 98.6 1.5E-07 3.3E-12 110.7 11.1 95 320-414 6-121 (556)
54 cd00812 LeuRS_core catalytic c 98.6 1.8E-07 3.8E-12 102.8 9.6 91 323-413 6-118 (314)
55 PRK00750 lysK lysyl-tRNA synth 98.6 2.9E-07 6.2E-12 107.5 11.9 238 319-606 24-321 (510)
56 cd00674 LysRS_core_class_I cat 98.5 4.9E-06 1.1E-10 93.0 18.7 243 318-607 19-317 (353)
57 cd00806 TrpRS_core catalytic c 98.5 4.1E-07 8.8E-12 98.7 9.6 171 327-555 7-197 (280)
58 cd00672 CysRS_core catalytic c 98.4 5.8E-07 1.2E-11 93.9 9.0 41 324-364 26-71 (213)
59 PF09334 tRNA-synt_1g: tRNA sy 98.2 3.2E-06 6.9E-11 95.8 8.7 99 502-617 279-379 (391)
60 COG0143 MetG Methionyl-tRNA sy 98.2 1.5E-05 3.2E-10 93.7 14.3 94 320-413 8-121 (558)
61 PRK12451 arginyl-tRNA syntheta 98.2 1.3E-06 2.9E-11 103.2 5.6 51 506-556 323-378 (562)
62 TIGR00456 argS arginyl-tRNA sy 98.1 2.2E-06 4.9E-11 101.3 5.7 66 491-556 311-379 (566)
63 PLN02610 probable methionyl-tR 98.1 3.1E-05 6.6E-10 95.0 15.5 89 508-612 304-396 (801)
64 cd00818 IleRS_core catalytic c 98.1 5.3E-06 1.2E-10 92.2 6.4 91 325-415 9-138 (338)
65 TIGR00467 lysS_arch lysyl-tRNA 98.0 8.3E-05 1.8E-09 87.1 15.4 237 318-609 18-317 (515)
66 TIGR00233 trpS tryptophanyl-tR 97.7 9.8E-05 2.1E-09 82.1 9.4 169 327-555 10-198 (328)
67 PLN02286 arginine-tRNA ligase 97.7 4.9E-05 1.1E-09 90.3 6.1 30 319-348 118-148 (576)
68 PRK12285 tryptophanyl-tRNA syn 97.6 0.00056 1.2E-08 77.2 12.1 186 306-555 54-257 (368)
69 cd00817 ValRS_core catalytic c 97.6 0.00017 3.6E-09 81.7 7.9 89 325-413 9-135 (382)
70 COG0018 ArgS Arginyl-tRNA synt 97.5 0.00026 5.7E-09 83.9 9.1 30 319-348 118-148 (577)
71 COG2511 GatE Archaeal Glu-tRNA 97.4 0.0038 8.2E-08 72.1 15.5 164 64-237 458-630 (631)
72 PRK12556 tryptophanyl-tRNA syn 97.3 0.0014 3.1E-08 73.1 10.8 89 327-424 11-109 (332)
73 TIGR00134 gatE_arch glutamyl-t 97.3 0.0048 1.1E-07 73.8 15.5 159 64-232 450-617 (620)
74 PRK14703 glutaminyl-tRNA synth 97.2 0.0066 1.4E-07 74.3 16.4 170 53-232 589-770 (771)
75 PRK08560 tyrosyl-tRNA syntheta 97.2 0.0023 4.9E-08 71.3 11.2 188 306-554 18-219 (329)
76 PRK00390 leuS leucyl-tRNA synt 97.0 0.0012 2.5E-08 81.7 7.8 95 320-414 35-151 (805)
77 TIGR00396 leuS_bact leucyl-tRN 97.0 0.0013 2.9E-08 81.5 8.2 93 320-414 32-148 (842)
78 PRK04028 glutamyl-tRNA(Gln) am 97.0 0.011 2.5E-07 70.7 15.3 165 63-237 456-629 (630)
79 cd00395 Tyr_Trp_RS_core cataly 97.0 0.0029 6.3E-08 68.8 9.2 171 327-556 7-205 (273)
80 PRK13208 valS valyl-tRNA synth 96.9 0.002 4.3E-08 79.6 7.9 90 325-414 46-170 (800)
81 PF01921 tRNA-synt_1f: tRNA sy 96.9 0.0036 7.8E-08 70.3 8.9 237 306-594 9-311 (360)
82 PRK05477 gatB aspartyl/glutamy 96.8 0.018 4E-07 67.0 14.7 160 64-231 300-473 (474)
83 TIGR00133 gatB glutamyl-tRNA(G 96.6 0.034 7.4E-07 64.9 15.1 159 65-231 304-476 (478)
84 COG0495 LeuS Leucyl-tRNA synth 96.6 0.0019 4.1E-08 79.1 4.9 92 321-414 38-153 (814)
85 PRK05743 ileS isoleucyl-tRNA s 96.5 0.0048 1E-07 77.3 7.9 93 321-413 53-180 (912)
86 PLN02563 aminoacyl-tRNA ligase 96.5 0.0061 1.3E-07 76.6 8.4 95 320-414 113-230 (963)
87 PLN02751 glutamyl-tRNA(Gln) am 96.5 0.047 1E-06 64.6 15.0 160 64-232 368-541 (544)
88 PTZ00419 valyl-tRNA synthetase 96.5 0.0061 1.3E-07 77.1 8.2 95 320-414 63-196 (995)
89 cd00805 TyrRS_core catalytic c 96.4 0.0098 2.1E-07 64.5 8.4 205 327-596 8-235 (269)
90 TIGR00392 ileS isoleucyl-tRNA 96.4 0.0077 1.7E-07 75.1 8.6 94 320-415 39-173 (861)
91 PRK05729 valS valyl-tRNA synth 96.4 0.0073 1.6E-07 75.5 8.3 90 325-414 44-171 (874)
92 TIGR00422 valS valyl-tRNA synt 96.3 0.009 2E-07 74.5 8.5 90 325-414 41-168 (861)
93 PRK14900 valS valyl-tRNA synth 96.3 0.009 2E-07 75.9 8.2 94 321-414 52-184 (1052)
94 PLN02843 isoleucyl-tRNA synthe 96.3 0.0087 1.9E-07 75.5 8.0 92 323-414 38-165 (974)
95 COG0180 TrpS Tryptophanyl-tRNA 96.3 0.012 2.7E-07 65.0 8.2 90 327-424 13-112 (314)
96 PLN02943 aminoacyl-tRNA ligase 96.2 0.011 2.3E-07 74.6 8.5 95 320-414 91-223 (958)
97 PF00133 tRNA-synt_1: tRNA syn 96.0 0.013 2.9E-07 70.2 7.6 91 324-414 30-159 (601)
98 COG0525 ValS Valyl-tRNA synthe 95.9 0.025 5.4E-07 69.8 9.2 90 325-414 41-168 (877)
99 TIGR00395 leuS_arch leucyl-tRN 95.9 0.012 2.5E-07 74.2 6.5 95 320-414 28-168 (938)
100 cd02156 nt_trans nucleotidyl t 95.8 0.029 6.3E-07 51.9 7.3 40 322-366 2-41 (105)
101 PF00579 tRNA-synt_1b: tRNA sy 95.8 0.0066 1.4E-07 66.2 3.3 174 327-556 13-205 (292)
102 PRK06039 ileS isoleucyl-tRNA s 95.8 0.02 4.4E-07 72.3 8.0 91 323-415 47-178 (975)
103 PLN02381 valyl-tRNA synthetase 95.7 0.027 5.9E-07 71.8 8.8 95 320-414 131-264 (1066)
104 PRK05912 tyrosyl-tRNA syntheta 95.7 0.13 2.8E-06 59.2 13.4 88 306-397 22-130 (408)
105 PRK13354 tyrosyl-tRNA syntheta 95.7 0.2 4.4E-06 57.7 14.8 89 306-397 21-128 (410)
106 PTZ00427 isoleucine-tRNA ligas 95.6 0.028 6E-07 72.3 8.1 90 325-414 110-238 (1205)
107 PRK00927 tryptophanyl-tRNA syn 95.6 0.016 3.5E-07 64.8 5.4 88 327-423 9-104 (333)
108 PRK13804 ileS isoleucyl-tRNA s 95.6 0.022 4.8E-07 71.8 7.2 95 320-414 57-189 (961)
109 KOG0436|consensus 95.3 0.047 1E-06 61.9 7.9 262 327-613 49-392 (578)
110 COG0064 GatB Asp-tRNAAsn/Glu-t 95.3 0.4 8.7E-06 55.9 15.3 158 67-231 308-479 (483)
111 PRK12282 tryptophanyl-tRNA syn 95.1 0.06 1.3E-06 60.3 8.0 92 320-422 5-105 (333)
112 PLN02882 aminoacyl-tRNA ligase 94.9 0.071 1.5E-06 68.6 8.7 90 325-414 46-174 (1159)
113 KOG0435|consensus 94.7 0.032 6.9E-07 66.3 4.7 95 317-414 57-176 (876)
114 PRK12284 tryptophanyl-tRNA syn 94.6 0.082 1.8E-06 60.9 7.5 88 327-423 10-107 (431)
115 PF09424 YqeY: Yqey-like prote 94.6 0.19 4.2E-06 49.8 9.1 85 128-231 57-142 (143)
116 PF02637 GatB_Yqey: GatB domai 94.2 0.16 3.5E-06 50.1 7.7 103 126-231 42-147 (148)
117 KOG0432|consensus 93.9 0.13 2.7E-06 63.1 7.4 92 324-415 82-212 (995)
118 PRK12283 tryptophanyl-tRNA syn 93.9 0.16 3.4E-06 58.2 7.8 88 327-423 10-106 (398)
119 PLN02959 aminoacyl-tRNA ligase 93.9 0.15 3.2E-06 65.4 8.4 31 319-349 46-77 (1084)
120 PLN02886 aminoacyl-tRNA ligase 93.5 0.17 3.7E-06 57.8 7.1 92 320-423 49-149 (389)
121 smart00845 GatB_Yqey GatB doma 93.3 0.6 1.3E-05 46.2 9.8 101 127-231 42-146 (147)
122 PLN02486 aminoacyl-tRNA ligase 93.2 0.31 6.8E-06 55.7 8.7 86 319-404 73-169 (383)
123 PTZ00126 tyrosyl-tRNA syntheta 92.0 0.63 1.4E-05 53.3 9.2 91 305-396 53-154 (383)
124 PF00750 tRNA-synt_1d: tRNA sy 92.0 0.1 2.3E-06 58.7 2.9 45 318-362 20-67 (354)
125 COG1384 LysS Lysyl-tRNA synthe 91.3 4.2 9.1E-05 48.0 14.8 51 318-368 19-74 (521)
126 PTZ00348 tyrosyl-tRNA syntheta 89.7 1.9 4E-05 52.9 10.6 89 306-395 20-119 (682)
127 PF00749 tRNA-synt_1c: tRNA sy 88.1 0.11 2.5E-06 57.6 -1.0 54 565-618 259-313 (314)
128 PHA01735 hypothetical protein 87.8 0.86 1.9E-05 39.8 4.4 53 130-183 19-74 (76)
129 TIGR00395 leuS_arch leucyl-tRN 86.9 1 2.2E-05 57.2 6.3 90 509-614 576-669 (938)
130 TIGR00234 tyrS tyrosyl-tRNA sy 86.5 2.6 5.6E-05 48.3 8.7 86 306-396 20-124 (377)
131 COG0008 GlnS Glutamyl- and glu 86.2 0.38 8.2E-06 56.4 1.9 93 532-640 226-325 (472)
132 PRK12300 leuS leucyl-tRNA synt 85.7 1.2 2.6E-05 56.3 6.0 81 332-414 1-129 (897)
133 PRK12300 leuS leucyl-tRNA synt 77.2 3.7 8.1E-05 52.0 6.0 89 509-613 533-625 (897)
134 KOG2438|consensus 72.7 95 0.0021 36.4 14.9 156 68-232 327-503 (505)
135 cd00817 ValRS_core catalytic c 72.1 3.9 8.3E-05 46.7 4.0 48 538-601 331-379 (382)
136 COG0060 IleS Isoleucyl-tRNA sy 70.5 15 0.00032 46.7 8.7 91 325-415 57-185 (933)
137 KOG0437|consensus 69.4 8.1 0.00018 47.4 5.9 69 316-386 42-116 (1080)
138 TIGR00422 valS valyl-tRNA synt 66.6 7.5 0.00016 49.1 5.2 94 508-619 480-578 (861)
139 PRK13208 valS valyl-tRNA synth 59.4 15 0.00032 46.1 6.0 94 507-619 487-585 (800)
140 PLN02943 aminoacyl-tRNA ligase 58.4 11 0.00025 48.1 4.8 59 544-620 578-636 (958)
141 KOG2713|consensus 57.3 16 0.00035 40.4 4.9 69 326-394 20-99 (347)
142 PRK06039 ileS isoleucyl-tRNA s 57.1 11 0.00024 48.4 4.3 59 545-619 588-646 (975)
143 TIGR00392 ileS isoleucyl-tRNA 54.5 25 0.00055 44.4 6.9 96 507-619 565-664 (861)
144 COG3118 Thioredoxin domain-con 53.6 67 0.0015 35.9 9.0 86 147-242 206-291 (304)
145 PRK05729 valS valyl-tRNA synth 49.1 25 0.00054 44.6 5.6 62 541-619 511-573 (874)
146 COG1610 Uncharacterized conser 46.7 2.7E+02 0.0059 28.2 11.1 85 127-230 60-145 (148)
147 cd00818 IleRS_core catalytic c 45.8 25 0.00054 39.5 4.4 75 511-601 257-335 (338)
148 PLN02959 aminoacyl-tRNA ligase 42.8 40 0.00088 43.9 6.2 91 507-614 672-767 (1084)
149 smart00422 HTH_MERR helix_turn 41.7 50 0.0011 27.7 4.7 24 572-595 47-70 (70)
150 PF09682 Holin_LLH: Phage holi 38.3 2.1E+02 0.0046 27.0 8.8 48 136-194 59-106 (108)
151 KOG0433|consensus 38.0 70 0.0015 39.8 6.6 108 306-416 46-190 (937)
152 PRK14900 valS valyl-tRNA synth 33.4 38 0.00081 44.0 3.8 57 546-619 535-591 (1052)
153 COG0162 TyrS Tyrosyl-tRNA synt 33.3 1.6E+02 0.0034 34.5 8.3 101 305-409 20-137 (401)
154 COG3372 Predicted nuclease of 31.2 1.7E+02 0.0036 34.0 7.9 122 48-181 15-146 (396)
155 cd02168 NMNAT_Nudix Nicotinami 29.6 1.5E+02 0.0032 30.6 6.7 34 320-362 4-37 (181)
156 PRK13793 nicotinamide-nucleoti 29.4 1.1E+02 0.0025 32.1 5.9 40 318-366 7-46 (196)
157 PLN02207 UDP-glycosyltransfera 28.0 90 0.002 37.0 5.4 68 166-240 389-468 (468)
158 PF07499 RuvA_C: RuvA, C-termi 24.9 54 0.0012 26.4 2.0 25 62-86 3-27 (47)
159 PLN02882 aminoacyl-tRNA ligase 22.7 80 0.0017 41.6 4.0 54 546-615 611-665 (1159)
160 COG4720 Predicted membrane pro 22.3 46 0.001 34.4 1.4 30 322-351 26-56 (177)
161 PF09312 SurA_N: SurA N-termin 21.5 70 0.0015 30.4 2.4 23 171-193 62-84 (118)
162 COG1056 NadR Nicotinamide mono 21.2 60 0.0013 33.6 2.0 59 318-385 6-70 (172)
163 TIGR00396 leuS_bact leucyl-tRN 20.6 1.1E+02 0.0023 39.0 4.4 47 549-611 604-650 (842)
164 PRK05743 ileS isoleucyl-tRNA s 20.1 2.1E+02 0.0046 36.7 6.9 51 544-611 587-637 (912)
No 1
>KOG1148|consensus
Probab=100.00 E-value=1.7e-226 Score=1849.00 Aligned_cols=753 Identities=59% Similarity=0.991 Sum_probs=715.3
Q ss_pred HHHHHHHHHhCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHHHHHhhccCCCccchHHHHHHHHhCCC
Q psy17575 62 ADSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQSSIHLPLLVKYIVSKAL 141 (832)
Q Consensus 62 ~~~l~~lF~~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy~lAtk~k~~~~~~r~~l~~~I~~gkl 141 (832)
+++++++|.+|||||+||+||+||++||++|..+|.+|++ +++||+++|+|||+|||++++|..+|+++|++||++|+|
T Consensus 3 ~~dl~~~f~~lGlse~k~~etlKn~kvs~~l~~~i~~a~~-~~~~~~~~g~Lly~lAt~~~~q~~~~~~llv~yI~~~~i 81 (764)
T KOG1148|consen 3 MEDLIALFTSLGLSEKKVKETLKNKKVSANLEKIIKEADV-SSGCDRTTGNLLYTLATKLKPQKLAHLPLLVSYIVNGKI 81 (764)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHhHHHHHHHHHHHHHhccc-ccccccccchhHHHHHhhcCccccccchHHHHHHHhccc
Confidence 7899999999999999999999999999999999999998 788999999999999999999999999999999999999
Q ss_pred CCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHhhCCCCCh
Q psy17575 142 DSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADG 221 (832)
Q Consensus 142 kt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vR~~LkWAd~ 221 (832)
||++||+||++|++++ +++..+|+++|||||+||+|||+++|.+||++|++.|+++||+||.| |+|.||+.|||||+
T Consensus 82 kt~~ql~aa~~Y~~~~--~~~~~~fe~ecgvgvvvtpeqie~~V~~~i~~~k~~il~eRy~~~~g-l~~~~R~~LkwAD~ 158 (764)
T KOG1148|consen 82 KTELQLDAALEYVKSH--TLDKKDFEKECGVGVVVTPEQIEEAVRKYIAENKEKILEERYHFNKG-LFGDVRKELKWADP 158 (764)
T ss_pred CchHHHHHHHHHHhcc--ccchhhhhhhcCccEEECHHHHHHHHHHHHHHhHHHHHHHHHhcchh-hHHHHHhhcCCCCH
Confidence 9999999999999994 47889999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhhHHHHHHHHHhhcCCCcccccCCCCccccccccCCCC-CcccccCCccccccchhhhhhccccCCCCCCCCCccCCcc
Q psy17575 222 KYIKSEVDVQVLNLLGPKTEADLAPVPKVKVNEKKSKPK-SNETQENGFEFVEENVNIGDLMKKLPFHKPGENFKSDGYV 300 (832)
Q Consensus 222 k~vK~~vD~~~l~lLGPKte~d~~kk~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~ 300 (832)
+.||++||+++++|||||||+|++++.|+++++..+++. .+..+.+.+.++...+.|++++ ..+||+||+|.
T Consensus 159 ~~vk~~iD~~~l~LlGpkte~dl~~~~k~~k~~~~k~~~~~~~~~~~~e~~s~~~~~~~e~~-~~~~hk~gent------ 231 (764)
T KOG1148|consen 159 KSVKKEIDKEVLELLGPKTEADLEKKKKKKKAEGEKKKTVSAKKAKNQEAASDKAPQIEELF-LTKFHKPGENT------ 231 (764)
T ss_pred HHHHHHHhhHHHHhcCccchhhcccccccccccccccccccCCCCCchhhhcccccchhhhh-hhhcccCCCCc------
Confidence 999999999999999999999999887665332211111 1111222232345567778754 36999999994
Q ss_pred cccccHHHHHHhhhhcCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHH
Q psy17575 301 VTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQW 380 (832)
Q Consensus 301 ~~~~~~~~~~~hl~~~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~W 380 (832)
++|+++|++||++|||+|+|||||+|||+||||||+|+.+||+||+.+||.|+||||||||+++.++|+++|.++++|
T Consensus 232 --~~t~ellk~HL~~TGGkV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkEee~yf~sI~e~V~W 309 (764)
T KOG1148|consen 232 --QHTEELLKEHLERTGGKVVTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKEEEEYFESIKEMVAW 309 (764)
T ss_pred --cchHHHHHHHHHhhCCeeEEeCCCCCCceeeecchhheeechhhhhhhCCeEEEecCCCCcchhhHHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCcccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCC---CCCCCCCCChhHhHHHHHHHHcCcccCCCce
Q psy17575 381 LGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNP---LPSPWRERPVEENVKLFEAMKNGLIDEGEAT 457 (832)
Q Consensus 381 LGl~pd~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~---~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~ 457 (832)
||++|++++|+||||+++|++|.+||++|+||+|||+.|||++.++ .+|+||+||+||||.+|++|++|++++|+++
T Consensus 310 LG~~P~kvTysSDyFdqLy~~av~LIrkG~AYVcHqt~eEik~~rg~~~~~spwRdRPieEsL~lF~~Mr~Gk~~eGeAt 389 (764)
T KOG1148|consen 310 LGFEPYKVTYSSDYFDQLYELAVELIRKGKAYVCHQTAEEIKERRGFNERLSPWRDRPIEESLRLFEDMRDGKYEEGEAT 389 (764)
T ss_pred hCCCceeeecchhHHHHHHHHHHHHHhcCceeEEeccHHHHHhhcCCCCCCCccccCcHHHHHHHHHHHhcCCcCcChhh
Confidence 9999999999999999999999999999999999999999996543 5799999999999999999999999999999
Q ss_pred EEEEecccCCC---CCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCC
Q psy17575 458 LRMKITLEEGK---QDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC 534 (832)
Q Consensus 458 lR~K~~~~~~~---~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~ 534 (832)
||||+++++++ +|+|+|||.+.||||+|++||||||||||||++||+++|||++|+.||..++.+|+|||++|++|+
T Consensus 390 LRmK~dl~~~~p~m~DlvayRik~~pHpRtg~kwcIYPTYDythCl~DSlEnITHSlCT~EF~~rR~SY~WLcnaL~iY~ 469 (764)
T KOG1148|consen 390 LRMKQDLESGNPQMWDLVAYRIKNVPHPRTGDKWCIYPTYDYTHCLVDSLENITHSLCTKEFQTRRSSYYWLCNALEIYC 469 (764)
T ss_pred eeeeeeccCCCccccccceeeeecCCCCCCCCceEEecccchhhhehhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhccc
Confidence 99999999876 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHH
Q psy17575 535 PVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVR 614 (832)
Q Consensus 535 P~~~ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r 614 (832)
|+||||||||+.||+|||||+.+||.+|+|.||||||++||.+|||||++|+||++||+.+|+|.++.+|++.+||+++|
T Consensus 470 P~qwEYgRLNv~~tv~SKRKi~~Lv~~~~V~~wDDPRLfTL~alRRRG~ppeAIn~F~~~lGvT~a~~~i~v~~lE~~VR 549 (764)
T KOG1148|consen 470 PVQWEYGRLNVTYTVVSKRKILKLVTEGYVRGWDDPRLFTLTALRRRGFPPEAINNFCASLGVTTAQTTIDVARLEAAVR 549 (764)
T ss_pred chhhhhceeeeeeeeeehHHHHHHhhhcccccCCCccchhhhhHHhcCCCHHHHHHHHHHhCcceeeceecHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCceeEEecCcceEEeecCCCCceeEEeecCCCCCCCCceeEEeecceeEEeCCccccccccCccccCCCCeee
Q psy17575 615 EVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVG 694 (832)
Q Consensus 615 ~~l~~~a~R~~av~dp~kl~i~N~~~~~~~~~~~~p~~P~~~~~G~~~v~~~~~iyIe~~D~~~~~~~~~~rL~~~~~V~ 694 (832)
++||.+|||.|+|++|+||+|+|+++ +.++.+++|++|++|.+|+|+|+|++.||||++||++.++|+|+||+|||+||
T Consensus 550 d~Ln~tapR~M~VleplkVti~N~~~-~~~~~i~iPd~P~dp~~g~~~Vpft~vIYIErSDFkee~dK~f~RLtpgQpVG 628 (764)
T KOG1148|consen 550 DYLNDTAPRLMFVLEPLKVTIENLSD-DYPESIEIPDFPGDPTSGFHKVPFTRVIYIERSDFKEEDDKDFFRLTPGQPVG 628 (764)
T ss_pred HHHhccCcceEEeecceEEEEecCCc-chhhhccCCCCCCCCccccccccccceEEEEcccccccCCcchhccCCCCcce
Confidence 99999999999999999999999999 88999999999999999999999999999999999999999999999999999
Q ss_pred eeecCceEEEeeEeecCCCCEEEEEEEEcCCCCCCCCceEEEecc-CCceeEEEEcccccCCCCCCCCCCCCCCccccCC
Q psy17575 695 LRYAGLVLEVDKVNTKCNGAITSIDVKATPVDVDNKPKAFIHWVA-RPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDIN 773 (832)
Q Consensus 695 L~~~~~~~~~~~~~~~~~g~v~e~~~~~~~~~~~~k~k~~I~Wv~-~~~~~evr~y~~Lf~~~~p~~~~~~~~~~~~~iN 773 (832)
|+++|+++++..+++|++|.|+||+++|++.++.+|||++||||| +|+.||||+|++||+++||+|. ++.||+|||
T Consensus 629 Lr~~~~vi~~~~vvkD~~g~v~ei~v~yd~~s~~~KPK~fIhWVse~Pv~vEvRlye~LFks~NP~d~---~e~fLsDiN 705 (764)
T KOG1148|consen 629 LRYAGYVIRVVKVVKDDEGTVIEIHVEYDPASKKKKPKAFIHWVSESPVKVEVRLYEQLFKSENPADL---NEVFLSDIN 705 (764)
T ss_pred eEeecceEEEEEEeeCCCCceEEEEEEecccccccCCceeEEeccCCCeEeehhHHHHHhccCCccch---hHHHHHhcC
Confidence 999999999999999999999999999999888899999999999 7899999999999999999876 456999999
Q ss_pred CCceeEEE-EEeecCccCCCCCCeEEeEEeeeEEEecCCCCCCccEEEeeeccccCCCCC
Q psy17575 774 PDSLKVSI-GYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGKS 832 (832)
Q Consensus 774 ~~S~~~~~-~~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~lv~n~~v~lk~~~~k~ 832 (832)
|+|+.|+. |++|..+...+++|+|||||+||||||+||+++ +|||||||+|||++||.
T Consensus 706 p~S~~V~~~a~~D~~~~~a~v~DrFQfeRiGYF~VDkDSt~~-kLVfNRtV~LKd~~gk~ 764 (764)
T KOG1148|consen 706 PDSLVVVKGALADKSISDAKVYDRFQFERIGYFCVDKDSTPG-KLVFNRTVTLKDDSGKK 764 (764)
T ss_pred ccchhhhhhhhhhhhhcccchhhhHhhhhcceeEecCCCCCc-eEEEEeEEEeccCCCCC
Confidence 99999999 899999999999999999999999999999999 99999999999999884
No 2
>PLN02859 glutamine-tRNA ligase
Probab=100.00 E-value=4.6e-214 Score=1844.03 Aligned_cols=755 Identities=45% Similarity=0.807 Sum_probs=706.0
Q ss_pred HHHHHHHHHhCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHHHHHhhccCCCccchHHHHHHHHhCCC
Q psy17575 62 ADSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQSSIHLPLLVKYIVSKAL 141 (832)
Q Consensus 62 ~~~l~~lF~~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy~lAtk~k~~~~~~r~~l~~~I~~gkl 141 (832)
+++++++|++|||+|+||+||+||++|+++|..+|++|++ ..+||+++|+|||+|||+++++...||++|++||++|+|
T Consensus 5 ~~~~~~~f~~IGL~e~kAketlKN~klt~~L~~iI~ea~~-~~~~dk~~g~LLy~LAtk~~~~~~~~r~~lv~~I~~gkI 83 (788)
T PLN02859 5 SEKPLELFLKIGLDERTARNAIANNKVTSNLTAVIHEAGV-TNGCDKTVGNLLYTVATKYPANALVHRPTLLSYIVSSKI 83 (788)
T ss_pred cHHHHHHHHHcCCChHHHHHHHhCHHHHHHHHHHHHhcCC-ccCCChHHHHHHHHHHHhcCCccchhHHHHHHHHHhCCC
Confidence 4678999999999999999999999999999999999998 456999999999999999998888999999999999999
Q ss_pred CCHHhHHHHHHHHHhCCCc-cCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHhhCCCCC
Q psy17575 142 DSTLRVDAALEYVLSHVNA-VNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWAD 220 (832)
Q Consensus 142 kt~~Ql~aAlkyl~~~~~~-~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vR~~LkWAd 220 (832)
||++||+||++|+++++.+ +|.++||++|||||+||+|||+++|++||++|+++|+++||++|+|.||++||+.|||||
T Consensus 84 kT~~Ql~AA~kYl~~~~~~~~d~~~Fek~CGVGV~VT~EqI~~~V~~~i~~~k~~il~~RY~~n~g~ll~~~r~~Lkwad 163 (788)
T PLN02859 84 KTPAQLEAAFSFFSSTGPESFDLNKFEEACGVGVVVSPEDIEAAVNEVFEENKEKILEQRYRTNVGDLLGQVRKRLPWAD 163 (788)
T ss_pred CCHHHHHHHHHHHHhCCCCccCHHHHHHhCCCCEEECHHHHHHHHHHHHHhhHHHHHHhcccccHHHHHHHHHhhCCCCC
Confidence 9999999999999999764 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHhhcCCCcccccCCCCccccccccCCCCCcccccCCccccccchhhhhhcc-ccCCCCCCCCCccCCc
Q psy17575 221 GKYIKSEVDVQVLNLLGPKTEADLAPVPKVKVNEKKSKPKSNETQENGFEFVEENVNIGDLMK-KLPFHKPGENFKSDGY 299 (832)
Q Consensus 221 ~k~vK~~vD~~~l~lLGPKte~d~~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~n~~~~~~ 299 (832)
++.||++||+++++||||||++|.+|++|++++++++..+ . +. . .+.....++|++ ...||+||||++++||
T Consensus 164 ~~~~k~~id~~~~~llg~k~~~d~~~~~k~~k~~~~~~~~-~-~~---~--~~~~~~~~~~~~~~~~~~~p~en~~~~~~ 236 (788)
T PLN02859 164 PKIVKKLIDKKLYELLGEKTAADNEKPVKKKKEKPAKVEE-K-KV---A--VAAAPPSEEELNPYSIFPQPEENFKVHTE 236 (788)
T ss_pred HHHHHHHHHHHHHHhcCCcchhhhcccccccccccccccc-c-cc---c--ccccccchhhccccccCCCccccccccce
Confidence 9999999999999999999999998665544333321111 0 00 0 112233456766 7789999999999999
Q ss_pred cccc--------ccHHHHHHhhhhcCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHH
Q psy17575 300 VVTE--------QTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFF 371 (832)
Q Consensus 300 ~~~~--------~~~~~~~~hl~~~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~ 371 (832)
|+++ |++++|++||++++|+|+||||||||||||||||||||+||+|||++||+|+||||||||+|+.++|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~hl~~t~g~V~tRFaPsPtG~LHiGharaallN~~~Ar~~~G~~~LRieDTdp~r~~~e~~ 316 (788)
T PLN02859 237 VFFSDGSVLRPSNTKEILEKHLKATGGKVYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDTNPEAEKKEYI 316 (788)
T ss_pred eeccccccccccCcHHHHHHHHhhcCCceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCccchHHH
Confidence 9988 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcCcccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCC--CCCCCCCCChhHhHHHHHHHHcC
Q psy17575 372 TGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNP--LPSPWRERPVEENVKLFEAMKNG 449 (832)
Q Consensus 372 ~~I~edL~WLGl~pd~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~--~~~~~R~r~~ee~L~~f~~m~~g 449 (832)
++|+++|+|||+.||+++|||+||+.+|++|.+||++|+||+|+||+|||++.+. .+|+||+++++|||.+|++|++|
T Consensus 317 ~~I~edL~WLG~~~d~~~~qSd~f~~~Y~~A~~Li~~G~AY~C~ct~eei~~~R~~~~~sp~Rd~s~eenl~lfe~m~~g 396 (788)
T PLN02859 317 DHIEEIVEWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIEESLKLFEDMRRG 396 (788)
T ss_pred HHHHHHHHHcCCCCCCcccccHhHHHHHHHHHHHHHcCCeEeccCCHHHHHHHHhhhccCCCCCCChHHhhhhhHHHHhc
Confidence 9999999999999999999999999999999999999999999999999987653 57999999999999999999999
Q ss_pred cccCCCceEEEEecccCC---CCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHH
Q psy17575 450 LIDEGEATLRMKITLEEG---KQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWL 526 (832)
Q Consensus 450 ~~~~g~~~lR~K~~~~~~---~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L 526 (832)
++.+|++|||||+|+.++ ++|+|+|||.+.+|+|+||+||||||||||||||||+|||||||||.||++|+++|+||
T Consensus 397 ~~~~G~~vlR~Kid~~~~n~~~rD~V~~RI~~~~h~rtgdk~~iyPtYdFA~~vdD~legITHvLRg~E~~~~~~~y~wl 476 (788)
T PLN02859 397 LIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWL 476 (788)
T ss_pred hhccCCeEEEEeccCCCCCceeeeceeEEEeccCCCccCCCeEEEecccccccccccccCCceEeechhhhcCCHHHHHH
Confidence 999999999999999765 48999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCcccccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCc-ccC
Q psy17575 527 CNALDIYCPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQA-VVS 605 (832)
Q Consensus 527 ~~aL~~~~P~~~ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~-~~~ 605 (832)
+++|||++|.+|||+|||++|++||||++.++|++|+|+||||||++||++||||||+|+||+|||+.+|||.++. .|+
T Consensus 477 ~~aLg~~~P~~~~f~rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG~s~~~~e~i~ 556 (788)
T PLN02859 477 LDSLGLYQPYVWEYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITRSDNSLIR 556 (788)
T ss_pred HHHcCCCCCcEEeeeeECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCceec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987 899
Q ss_pred HHHHHHHHHHhhccCCCceeEEecCcceEEeecCCCCceeEEee---cCCCCCCCCceeEEeecceeEEeCCcccccccc
Q psy17575 606 PNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTV---PDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEK 682 (832)
Q Consensus 606 ~~~le~~~r~~l~~~a~R~~av~dp~kl~i~N~~~~~~~~~~~~---p~~P~~~~~G~~~v~~~~~iyIe~~D~~~~~~~ 682 (832)
++.||+|+|+.||+++||+|||+||+||+|+|+|+ +..+++++ |.||+++++|+|+|+|+++||||++||++.+++
T Consensus 557 ~~~Le~~~r~~l~~~a~R~maV~dp~kv~i~n~~~-~~~~~~~~~~~P~~p~~~~~g~r~v~f~~~iyIe~~D~~~~~~~ 635 (788)
T PLN02859 557 MDRLEHHIREELNKTAPRTMVVLHPLKVVITNLES-GEVIELDAKRWPDAQNDDPSAFYKVPFSRVVYIERSDFRLKDSK 635 (788)
T ss_pred HHHHHhhCHHhhCCcCcchheecCCeEEEEecCCC-CceeecccccCCCCCCCccCceEEEEECCeEEEEhHHhhccccc
Confidence 99999999999999999999999999999999998 77778888 555556789999999999999999999999999
Q ss_pred CccccCCCCeeeeeecCceEEEeeEe-ecCCCCEEEEEEEEcCCCCCCCCceEEEeccC------CceeEEEEcccccCC
Q psy17575 683 GYRRLAPGQGVGLRYAGLVLEVDKVN-TKCNGAITSIDVKATPVDVDNKPKAFIHWVAR------PISIEVRLYSTLFLH 755 (832)
Q Consensus 683 ~~~rL~~~~~V~L~~~~~~~~~~~~~-~~~~g~v~e~~~~~~~~~~~~k~k~~I~Wv~~------~~~~evr~y~~Lf~~ 755 (832)
+|+||+||++|+|+++ |+|.|++++ +|++|+|++|+|+|++.+. .|+|++|||||+ ++++|+|+|++||++
T Consensus 636 ~~~rL~pg~~V~L~~~-~~i~~~~~~~~d~~g~v~el~~~~d~~~~-~K~k~~ihWvs~~~~~~~~~~~e~r~yd~Lf~~ 713 (788)
T PLN02859 636 DYYGLAPGKSVLLRYA-FPIKCTDVVLADDNETVVEIRAEYDPEKK-TKPKGVLHWVAEPSPGVEPLKVEVRLFDKLFLS 713 (788)
T ss_pred cceecCCCCEEEEcce-eEEEEEEEEEeCCCCCEEEEEEEEccCCC-CccCceEEeeecCCCCCCceeEEEEeehhhcCC
Confidence 9999999999999765 778899988 8999999999999998754 689999999985 379999999999999
Q ss_pred CCCCCCCCCCCCccccCCCCceeEEE-EEeecCccCCCCCCeEEeEEeeeEEEecCCCCCCccEEEeeeccccCCCCC
Q psy17575 756 KNPEDTYQVPEGYLSDINPDSLKVSI-GYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGKS 832 (832)
Q Consensus 756 ~~p~~~~~~~~~~~~~iN~~S~~~~~-~~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~lv~n~~v~lk~~~~k~ 832 (832)
++|++. ++|+++|||+|+.++. |++|++++++++||+|||||+||||||+||+++ ++||||||+||++|+|+
T Consensus 714 ~~p~~~----~~~~~~iNp~S~~v~~~a~~e~~~~~~~~~~~~QfeR~GYF~~D~ds~~~-~~vfNr~v~Lkd~~~k~ 786 (788)
T PLN02859 714 ENPAEL----EDWLEDLNPQSKEVISGAYAVPSLKDAKVGDRFQFERLGYFAVDKDSTPE-KLVFNRTVTLKDSYGKG 786 (788)
T ss_pred CCCccc----ccHHHhCCCCccEEEeceEEcHhHhhCCCCCeEEEEeeeEEeccCCCCCC-CeEEEeeeecccccccc
Confidence 999754 5799999999999997 999999999999999999999999999999988 99999999999999874
No 3
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.9e-152 Score=1287.55 Aligned_cols=535 Identities=44% Similarity=0.794 Sum_probs=508.1
Q ss_pred cCCCCCCCCCccCCcccccccHHHHHHhhhhcCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcc
Q psy17575 285 LPFHKPGENFKSDGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPE 364 (832)
Q Consensus 285 ~~~~~~g~n~~~~~~~~~~~~~~~~~~hl~~~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~ 364 (832)
..||..+++....|| .|+++++++|++.++|+|+||||||||||||||||||||+||+|||++||+|+||||||||+
T Consensus 20 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~gkv~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~iLRiEDTDp~ 96 (574)
T PTZ00437 20 RDLSLLQTGRPVPGC---RNTPELLEKHEAVTGGKPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDTNPE 96 (574)
T ss_pred cchhhhcccCCCccc---CCCHHHHHHHhcccCCcEEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCcc
Confidence 556777777766666 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHcCCCcCcccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccC--CCCCCCCCCChhHhHHH
Q psy17575 365 KEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN--PLPSPWRERPVEENVKL 442 (832)
Q Consensus 365 r~~~e~~~~I~edL~WLGl~pd~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~--~~~~~~R~r~~ee~L~~ 442 (832)
|+.++|+++|+++|+|||+.||++++||+||+.||++|.+||++|+||+|+||+|||++.+ +.+|+||+++++|||++
T Consensus 97 r~~~e~~~~I~~dL~wLGi~~D~~~~qS~y~~~~ye~A~~Li~~G~AY~C~cs~eei~~~R~~~~~~~~R~~~~eenL~l 176 (574)
T PTZ00437 97 TEEQVYIDAIMEMVKWMGWKPDWVTFSSDYFDQLHEFAVQLIKDGKAYVDHSTPDELKQQREQREDSPWRNRSVEENLLL 176 (574)
T ss_pred ccChHHHHHHHHHHHHcCCCCCCCCcCchhHHHHHHHHHHHHHcCCEEEcCCCHHHHHHHhhcccCCccccCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998764 45799999999999999
Q ss_pred HHHHHcCcccCCCceEEEEecccCC---CCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeeccccccc
Q psy17575 443 FEAMKNGLIDEGEATLRMKITLEEG---KQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSR 519 (832)
Q Consensus 443 f~~m~~g~~~~g~~~lR~K~~~~~~---~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~ 519 (832)
|++|++|.+.+|++|||+|+|+.++ ++|+|+|||.+.+|||+||+|+||||||||||||||+|||||||||.||..+
T Consensus 177 fe~M~~g~~~~g~~vlR~K~d~~~~n~~~rD~v~~Ri~~~~h~~~gdk~~iyPtYdFa~~vdD~l~gITHvlct~Ef~~r 256 (574)
T PTZ00437 177 FEHMRQGRYAEGEATLRVKADMKSDNPNMRDFIAYRVKYVEHPHAKDKWCIYPSYDFTHCLIDSLEDIDYSLCTLEFETR 256 (574)
T ss_pred HHHHhhcccccCCeEEEEeCcCCCCCCccccCeeeeeccCCcCCCCCceEEEccCcccceeechhcCCCEEeeechhhcc
Confidence 9999999999999999999999874 4899999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhcCCCCCCcccccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCC
Q psy17575 520 RSSYYWLCNALDIYCPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTG 599 (832)
Q Consensus 520 ~~~~~~L~~aL~~~~P~~~ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~ 599 (832)
++.|+||+++|+++.|.+|+|+|||++|++||||++.++|++|+|+||||||++||++||||||+||||+|||+.+|||+
T Consensus 257 ~~~y~wl~~~l~l~~p~~~ef~rln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f~~~~G~sk 336 (574)
T PTZ00437 257 RESYFWLLEELNLWRPHVWEFSRLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVGITR 336 (574)
T ss_pred cHHHHHHHHHhCCcccceEeeeeecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCHHHHHHHHHHhhccCCCceeEEecCcceEEeecCCCCceeEEeecCCCCCCCCceeEEeecceeEEeCCccc-c
Q psy17575 600 AQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFK-V 678 (832)
Q Consensus 600 ~~~~~~~~~le~~~r~~l~~~a~R~~av~dp~kl~i~N~~~~~~~~~~~~p~~P~~~~~G~~~v~~~~~iyIe~~D~~-~ 678 (832)
+++.|+|++||++||++||+.|||+|||+||++|+|+|++. .+++++|+||++|++|+|+|+|+++||||++||+ +
T Consensus 337 ~~~~i~~~~Le~~nR~~ld~~a~R~~~V~dPv~v~I~n~~~---~~~~~~p~hP~~~~~G~R~i~~~~~iyIe~~D~~~~ 413 (574)
T PTZ00437 337 SMNVIQISMLENTLREDLDERCERRLMVIDPIKVVVDNWKG---EREFECPNHPRKPELGSRKVMFTDTFYVDRSDFRTE 413 (574)
T ss_pred cceEeeHHHHHHHHHHHhcccCccceEEccceEEEEecCCC---ceEEeccCCCCCCcCceEEEEEcCeEEEEHHHhhcc
Confidence 99999999999999999999999999999999999999764 3778999999999999999999999999999998 5
Q ss_pred ccccCccccCCCC-eeeeeecCceEEEeeEeecCCCCEEEEEEEEcCCCCCCCCceEEEeccCC--ceeEEEEcccccCC
Q psy17575 679 IQEKGYRRLAPGQ-GVGLRYAGLVLEVDKVNTKCNGAITSIDVKATPVDVDNKPKAFIHWVARP--ISIEVRLYSTLFLH 755 (832)
Q Consensus 679 ~~~~~~~rL~~~~-~V~L~~~~~~~~~~~~~~~~~g~v~e~~~~~~~~~~~~k~k~~I~Wv~~~--~~~evr~y~~Lf~~ 755 (832)
.++++|+||+||+ .|+||++++| .|+++.+|.+|+|++++|.++... .+|+|++|||||+. ++++||+|++||++
T Consensus 414 ~~~~~f~rL~~g~~~vrL~~~~~i-~~~~~~~d~~g~v~~~~~~~d~~~-~~k~k~~IhWvs~~~~v~~evr~Yd~Lf~~ 491 (574)
T PTZ00437 414 DNNSKFYGLAPGPRVVGLKYSGNV-VCKGFEVDAAGQPSVIHVDIDFER-KDKPKTNISWVSATACTPVEVRLYNALLKD 491 (574)
T ss_pred cccccceecCCCCeEEEeccEEEE-EEEEEEECCCCCEEEEEEEecccc-cccCCCeEEEeecCCceeEEEEeccccccC
Confidence 6789999999997 8999999865 688899999999999999998874 57889999999964 89999999999999
Q ss_pred CCCCCCCCCCCCccccCCCCceeEEEEEeecCccCCCCCCeEEeEEeeeEEEecCCCCCCccEEEeeeccccCCCCC
Q psy17575 756 KNPEDTYQVPEGYLSDINPDSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGKS 832 (832)
Q Consensus 756 ~~p~~~~~~~~~~~~~iN~~S~~~~~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~lv~n~~v~lk~~~~k~ 832 (832)
++|+.+ ++|+++|||+|+.+..|++|+++.++++|++|||||+|||+||++|+++ ++||||||+||++++|.
T Consensus 492 ~~p~~~----~~~~~~iNp~s~~~~~g~~E~~~~~~~~~~~~QfeR~Gyf~vD~ds~~~-~~vfNr~v~Lkd~~~K~ 563 (574)
T PTZ00437 492 DRAAID----PEFLKFIDEDSEVVSHGYAEKGIENAKHFESVQAERFGYFVVDPDTRPD-HLVMNRVLGLREDKEKA 563 (574)
T ss_pred CCCCcc----ccHhhhCCCCceEEEEEEEchhhhhCCCCCeEEEEEeEEEEeCCCCCCC-CEEEEeeeEcccccccc
Confidence 999643 6899999999999989999999999999999999999999999998888 99999999999998773
No 4
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-149 Score=1271.66 Aligned_cols=520 Identities=47% Similarity=0.845 Sum_probs=492.2
Q ss_pred HHHHHHhhhhc-CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCC
Q psy17575 306 HDLLREHIKYT-GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYK 384 (832)
Q Consensus 306 ~~~~~~hl~~~-~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~ 384 (832)
.+++.+.|+.. .++|+||||||||||||||||||||+||+|||++||+|+||||||||+|+.++|+++|++||+|||+.
T Consensus 15 ~~~~~~dl~~~~~~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLGi~ 94 (554)
T PRK05347 15 RQIIDEDLASGKHTRVHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNPEKEDQEYVDSIKEDVRWLGFD 94 (554)
T ss_pred HHHHHhHHhcCCcCceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCcCChHHHHHHHHHHHHcCCC
Confidence 45566666643 35899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-cccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccC------CCCCCCCCCChhHhHHHHHHHHcCcccCCCce
Q psy17575 385 PY-QITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN------PLPSPWRERPVEENVKLFEAMKNGLIDEGEAT 457 (832)
Q Consensus 385 pd-~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~------~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~ 457 (832)
|| .+++||+||+.||++|.+||++|+||+|+||+|||++.+ +.+|+||+++++|+|++|++|++|.+.+|+++
T Consensus 95 ~d~~~~~qS~r~~~~y~~a~~Li~~G~AY~c~cs~eei~~~R~~~~~~g~~~~~R~~s~eenl~~~~~m~~G~~~~g~~v 174 (554)
T PRK05347 95 WSGELRYASDYFDQLYEYAVELIKKGKAYVDDLSAEEIREYRGTLTEPGKNSPYRDRSVEENLDLFERMRAGEFPEGSAV 174 (554)
T ss_pred CCCCceeeecCHHHHHHHHHHHHHcCCEeeCCCCHHHHHHHhhhhhhcCCCCCccCCCHHHHHHHHHHHHCCCCCCCcEE
Confidence 95 789999999999999999999999999999999998654 46899999999999999999999999999999
Q ss_pred EEEEecccCC---CCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCC-C
Q psy17575 458 LRMKITLEEG---KQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDI-Y 533 (832)
Q Consensus 458 lR~K~~~~~~---~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~-~ 533 (832)
||+|+|+.++ ++|||+||+.+.||||+||+||||||||||||||||+|||||||||.||++|+++|.||+++||+ +
T Consensus 175 lR~Kid~~~~n~~~rD~Vi~R~~~~~H~r~G~k~~iyPtYdfA~~vdD~l~gITHvlRg~E~~~~t~~~~~i~~alg~~~ 254 (554)
T PRK05347 175 LRAKIDMASPNINMRDPVLYRIRHAHHHRTGDKWCIYPMYDFAHCISDAIEGITHSLCTLEFEDHRPLYDWVLDNLPIPP 254 (554)
T ss_pred EEEEeeccCCCCCCCCCEEEEecCCCCCccCCceeeecCcCccceeeccccCCceEEeccccccChHHHHHHHHHcCCCC
Confidence 9999999875 37999999999999999999999999999999999999999999999999999999999999985 5
Q ss_pred CCCcccccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHH
Q psy17575 534 CPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVV 613 (832)
Q Consensus 534 ~P~~~ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~ 613 (832)
.|.||+|+|||++|++||||++.++|++|.|+||||||++||++||||||+||||+|||+.+|||.++..|+|++||++|
T Consensus 255 ~P~~~~F~rln~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~s~~~~~i~~~~L~~~n 334 (554)
T PRK05347 255 HPRQYEFSRLNLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSVIDMSMLESCI 334 (554)
T ss_pred CCceEEEEEECCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCeecHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCceeEEecCcceEEeecCCCCceeEEeecCCCCCCCCceeEEeecceeEEeCCccccccccCccccCCCCee
Q psy17575 614 REVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGV 693 (832)
Q Consensus 614 r~~l~~~a~R~~av~dp~kl~i~N~~~~~~~~~~~~p~~P~~~~~G~~~v~~~~~iyIe~~D~~~~~~~~~~rL~~~~~V 693 (832)
|++||+.|||+|||.||++|+|+|+++ ...+.+++|+||+++++|+|+|+|+++||||++||++.++++|+||+||++|
T Consensus 335 Rk~ld~~a~R~m~V~~pv~v~i~n~~~-~~~~~~~~p~hP~~~~~G~r~i~~~~~iyIe~~D~~~~~~~~~~rl~~g~~v 413 (554)
T PRK05347 335 REDLNENAPRAMAVLDPLKLVITNYPE-GQVEELEAPNHPEDPEMGTREVPFSRELYIEREDFMEEPPKKYFRLVPGKEV 413 (554)
T ss_pred HHHhccCCCceEEEcCCeEEEEEeCCC-CceEEEEecCCCCCCcCceEEEEEcCeEEEEhHHhhccccccccccCCCCEE
Confidence 999999999999999999999999987 6778899999999999999999999999999999999999999999999999
Q ss_pred eeeecCceEEEeeEeecCCCCEEEEEEEEcCCC------CCCCCceEEEeccC--CceeEEEEcccccCCCCCCCCCCCC
Q psy17575 694 GLRYAGLVLEVDKVNTKCNGAITSIDVKATPVD------VDNKPKAFIHWVAR--PISIEVRLYSTLFLHKNPEDTYQVP 765 (832)
Q Consensus 694 ~L~~~~~~~~~~~~~~~~~g~v~e~~~~~~~~~------~~~k~k~~I~Wv~~--~~~~evr~y~~Lf~~~~p~~~~~~~ 765 (832)
+||++++ |.|+++.+|.+|.|++++|++++.+ +.+|+|++|||||+ .++++||+|++||++++|++.
T Consensus 414 rL~~~~~-i~~~~~~kd~~g~v~~~~~~~~~~~~~g~~~~~kk~k~~IhWv~~~~~v~~~v~~yd~Lf~~~~p~~~---- 488 (554)
T PRK05347 414 RLRNAYV-IKCEEVVKDADGNITEIHCTYDPDTLSGNPADGRKVKGTIHWVSAAHAVPAEVRLYDRLFTVPNPAAG---- 488 (554)
T ss_pred EecCEEE-EEEEEEEEcCCCCEEEEEEEEccccccCCCccCcccCCEEEeeecCCCEeEEEEEeccccCCCCCCcc----
Confidence 9999865 5789999999999999999998763 56788999999985 489999999999999999743
Q ss_pred CCccccCCCCceeEEEEEeecCccCCCCCCeEEeEEeeeEEEecCCCCCCccEEEeeeccccCCCCC
Q psy17575 766 EGYLSDINPDSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGKS 832 (832)
Q Consensus 766 ~~~~~~iN~~S~~~~~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~lv~n~~v~lk~~~~k~ 832 (832)
++|+++|||+|+.+..|++|+++.++++|++|||||+|||+||++++++ ++||||||+||++++|.
T Consensus 489 ~~~~~~iN~~s~~~~~~~~E~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~-~~v~n~~v~l~d~~~k~ 554 (554)
T PRK05347 489 KDFLDFLNPDSLVIKQGFVEPSLADAKPEDRFQFEREGYFCADKDSTPG-KLVFNRTVGLRDSWAKI 554 (554)
T ss_pred ccHhHhcCCCceEEEeEEEcHHHhhCCCCCEEEEEEeeEEEecCCCCCC-CeEEEeeeecccccCCC
Confidence 6899999999998888999999999999999999999999999988888 99999999999999874
No 5
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=100.00 E-value=1.5e-145 Score=1281.62 Aligned_cols=520 Identities=43% Similarity=0.771 Sum_probs=494.5
Q ss_pred HHHHHHhhhh-cCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCC
Q psy17575 306 HDLLREHIKY-TGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYK 384 (832)
Q Consensus 306 ~~~~~~hl~~-~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~ 384 (832)
.+++++||+. ..|+|+|||||||||||||||||+|++||+|||++||+|+||||||||+|+.++|+++|++||+|||+.
T Consensus 17 ~~~~~~~l~~g~~~~v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~eDTd~~r~~~e~~~~I~~dl~wLG~~ 96 (771)
T PRK14703 17 TEIIEEDLEAGRYPRVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPETEDTEYVEAIKDDVRWLGFD 96 (771)
T ss_pred HHHHHHHHhcCCCCceEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCcCChHHHHHHHHHHHHcCCC
Confidence 6889999998 678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCc-ccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccC------CCCCCCCCCChhHhHHHHHHHHcCcccCCCce
Q psy17575 385 PYQ-ITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN------PLPSPWRERPVEENVKLFEAMKNGLIDEGEAT 457 (832)
Q Consensus 385 pd~-~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~------~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~ 457 (832)
||+ +++||+||+.||++|.+||++|+||+|+||++||++.+ +.+|+||+++++|++.+|++|++|.+.+|+++
T Consensus 97 wd~~~~~qS~~~~~y~~~a~~Li~~G~aY~c~cs~eei~~~r~~~~~~g~~~~~R~~s~ee~l~~~~~m~~G~~~~g~~v 176 (771)
T PRK14703 97 WGEHLYYASDYFERMYAYAEQLIKMGLAYVDSVSEEEIRELRGTVTEPGTPSPYRDRSVEENLDLFRRMRAGEFPDGAHV 176 (771)
T ss_pred CCCCceEeecCHHHHHHHHHHHHHcCCcccCcCCHHHHHHHHhhhhhcCCCCCCCCCCHHHHHHHHHHHhCCCCcCCCeE
Confidence 995 69999999999999999999999999999999998754 46899999999999999999999999999999
Q ss_pred EEEEecccCC---CCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCC-
Q psy17575 458 LRMKITLEEG---KQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIY- 533 (832)
Q Consensus 458 lR~K~~~~~~---~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~- 533 (832)
||+|+++.++ ++|||+||+...||||+||+||||||||||||||||+|||||||||.||.+++++|+||+++||+.
T Consensus 177 lR~Kid~~~~n~~~rD~v~~R~~~~~H~~~Gd~~~i~PtYdfa~~vdD~l~gITHvlRg~E~~~~~~~~~~l~~~l~~~~ 256 (771)
T PRK14703 177 LRAKIDMSSPNMKLRDPLLYRIRHAHHYRTGDEWCIYPMYDFAHPLEDAIEGVTHSICTLEFENNRAIYDWVLDHLGPWP 256 (771)
T ss_pred EEEEeeccCCcccCCCCEEEEEcCCCCCCcCCCCCcCCCccccceeeccccCCcEEEecHhhhhccHHHHHHHHHhCCCC
Confidence 9999999875 379999999999999999999999999999999999999999999999999999999999999653
Q ss_pred -CCCcccccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHH
Q psy17575 534 -CPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAV 612 (832)
Q Consensus 534 -~P~~~ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~ 612 (832)
.|.||+|+|||+.|++||||++.++|++|.|+||||||++||++||||||+||||+|||+.+|||++++.++|++||++
T Consensus 257 ~~P~~~~f~rl~l~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~f~~~lG~s~~~~~i~~~~L~~~ 336 (771)
T PRK14703 257 PRPRQYEFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIGVAKTNSTVDIGVLEFA 336 (771)
T ss_pred CCcceeEEEEeccCCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHHHHHHhCCCccCceecHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCceeEEecCcceEEeecCCCCceeEEeecCCCCC-CCCceeEEeecceeEEeCCccccccccCccccCCCC
Q psy17575 613 VREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPND-ATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQ 691 (832)
Q Consensus 613 ~r~~l~~~a~R~~av~dp~kl~i~N~~~~~~~~~~~~p~~P~~-~~~G~~~v~~~~~iyIe~~D~~~~~~~~~~rL~~~~ 691 (832)
||++||+.|||+|||+||++|+|+|.++ +.++++++|+||++ |++|+|+|+|+++||||++||++.++++|+||+||+
T Consensus 337 ~R~~ld~~a~R~~~V~~p~~v~i~n~~~-~~~~~~~~p~hp~~~~~~G~r~v~~~~~iyIe~~D~~~~~~~~~~~l~~g~ 415 (771)
T PRK14703 337 IRDDLNRRAPRVMAVLDPLKVVIENLPA-GKVEELDLPYWPHDVPKEGSRKVPFTRELYIERDDFSEDPPKGFKRLTPGR 415 (771)
T ss_pred HHHHhccCCCceEEEcCCeEEEEEeCCC-CceEEEeccCCCCCCccCceEEEEEcCeEEEEhhHhhccccccccccCCCC
Confidence 9999999999999999999999999987 77899999999997 899999999999999999999999999999999999
Q ss_pred eeeeeecCceEEEeeEeecCCCCEEEEEEEEcCCCC-----CCCCceEEEeccC--CceeEEEEcccccCCCCCCCCCCC
Q psy17575 692 GVGLRYAGLVLEVDKVNTKCNGAITSIDVKATPVDV-----DNKPKAFIHWVAR--PISIEVRLYSTLFLHKNPEDTYQV 764 (832)
Q Consensus 692 ~V~L~~~~~~~~~~~~~~~~~g~v~e~~~~~~~~~~-----~~k~k~~I~Wv~~--~~~~evr~y~~Lf~~~~p~~~~~~ 764 (832)
+|+||++++ |.|+++.+|++|.|++++|++++.+. .+|++++|||||. .++++||+|++||++++|++.
T Consensus 416 ~vrL~~~~~-i~~~~~~kd~~G~v~~~~~~~~~~~~~~~~~~~k~k~~ihWv~~~~~v~~~vr~Yd~Lf~~~~p~~~--- 491 (771)
T PRK14703 416 EVRLRGAYI-IRCDEVVRDADGAVTELRCTYDPESAKGEDTGRKAAGVIHWVSAKHALPAEVRLYDRLFKVPQPEAA--- 491 (771)
T ss_pred EEEecceEE-EEEEEEEEcCCCCEEEEEEEEeCCCcCCCccCCcCCcEEEEeecCCCeeEEEEecccccCCCCCCcc---
Confidence 999999865 57899999999999999999988764 3678889999985 489999999999999999632
Q ss_pred CCCccccCCCCceeEEEEEeecCccCCCCCCeEEeEEeeeEEEec-CCCCCCccEEEeeeccccCCCC
Q psy17575 765 PEGYLSDINPDSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDR-DSNINHKPVVNLTVSLKEDSGK 831 (832)
Q Consensus 765 ~~~~~~~iN~~S~~~~~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~-~~~~~~~lv~n~~v~lk~~~~k 831 (832)
+++|+++|||+|+.++.|++|+++.++++|++|||||+|||+||+ +|+++ ++||||||+||++|+|
T Consensus 492 ~~~~~~~lN~~Sl~~~~g~~e~~~~~~~~~~~~QfeR~Gyf~~D~~d~~~~-~~vfNr~v~lkd~~~~ 558 (771)
T PRK14703 492 DEDFLEFLNPDSLRVAQGRVEPAVRDDPADTRYQFERQGYFWADPVDSRPD-ALVFNRIITLKDTWGA 558 (771)
T ss_pred ccchHhhcCCCCceeEccEEcHhHhhCCCCCEEEEEEeEEEEEccCCCCCC-CeEEEeecccCccccc
Confidence 468999999999999999999999999999999999999999997 66677 9999999999999986
No 6
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=100.00 E-value=1.3e-143 Score=1220.12 Aligned_cols=502 Identities=47% Similarity=0.838 Sum_probs=477.5
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcC-cccccchhHHHH
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPY-QITHSSDYFHQL 398 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd-~~~~qSd~~~~~ 398 (832)
|+||||||||||||||||||||+||+|||++||+|+||||||||+|+.++|+++|++||+|||+.|| .+++||+||+.|
T Consensus 1 V~tRFaPsPtG~LHiG~ar~al~n~~~A~~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLG~~~d~~~~~qS~~~~~~ 80 (522)
T TIGR00440 1 VHTRFPPEPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVEWLGFKWEGKIRYSSDYFDEL 80 (522)
T ss_pred CeEecCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCcccCChHHHHHHHHHHHHcCCCCCCCceEccccHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999995 689999999999
Q ss_pred HHHHHHHHHcCCccccCCCHHHHhccC------CCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCC---CC
Q psy17575 399 YEWAVKLIKKGLAYVCHQKSDEMKGFN------PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQ 469 (832)
Q Consensus 399 ye~A~~Li~~G~AY~C~Cs~eel~~~~------~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~---~~ 469 (832)
|++|.+||++|+||+|+||+|||++.+ +.+|+||+++++|+|++|++|++|++++|++|||||+|+.++ ++
T Consensus 81 ~~~a~~Li~~G~AY~c~cs~eel~~~R~~~~~~g~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~vlR~Kid~~~~n~~~r 160 (522)
T TIGR00440 81 YRYAEELIKKGLAYVDELTPEEIREYRGTLTDPGKNSPYRDRSIEENLALFEKMRDGKFKEGKAILRAKIDMASPFPVMR 160 (522)
T ss_pred HHHHHHHHHcCCEEeecCCHHHHHHhhhhcccCCCCCcccCCCHHHHHHHHHHHhcCcccCCCeEEEEeCcCCCCCceEe
Confidence 999999999999999999999998765 357999999999999999999999999999999999999764 48
Q ss_pred CceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCC-CCCcccccccCCCCc
Q psy17575 470 DPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIY-CPVQWEYGRLNVNYT 548 (832)
Q Consensus 470 D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~-~P~~~ef~hL~l~gt 548 (832)
|+|+|||.+.+|+|+||+|+||||||||||||||+|||||||||+||++||++|.||+++|+++ .|.||+|+|||++|+
T Consensus 161 D~V~~Ri~~~~h~~~gdk~~iyPtYdfa~~vdD~l~gITHviRg~E~~~nt~~Y~~~~~~l~~~~~P~~~~F~rln~~~~ 240 (522)
T TIGR00440 161 DPVAYRIKFAPHHQTGTKWCIYPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHIFPRPAQYEFSRLNLEGT 240 (522)
T ss_pred eeeEEEEecCCCCCCCCCeeEEeCcCCceeehhccCCCceEeecHhhhhcHHHHHHHHHhcCccCCCceEEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998 899999999999999
Q ss_pred ccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhhccCCCceeEEe
Q psy17575 549 VVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVI 628 (832)
Q Consensus 549 kLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l~~~a~R~~av~ 628 (832)
|||||++.++|++|.|+||||||++||++||||||+||||+|||+.+|||.++..+++..|++++|+++++.++|+|||+
T Consensus 241 kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~~l~~~~r~f~~~~~~r~~av~ 320 (522)
T TIGR00440 241 VLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRLESCIREDLNENAPRAMAVI 320 (522)
T ss_pred CcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCceehhhHHHHHHHhhhhcCccccccc
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred cCcceEEeecCCCCceeEEeecCCCCCCCCceeEEeecceeEEeCCccccccccCccccCCCCeeeeeecCceEEEeeEe
Q psy17575 629 DPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVN 708 (832)
Q Consensus 629 dp~kl~i~N~~~~~~~~~~~~p~~P~~~~~G~~~v~~~~~iyIe~~D~~~~~~~~~~rL~~~~~V~L~~~~~~~~~~~~~ 708 (832)
||+||+|+|++. . .+..++|+||+++++|+|.++|+++||||++||++.++++|+||+||++|+||++++ |.|+++.
T Consensus 321 d~~kl~i~~~~~-~-~~~~~~p~~p~~~~~g~r~v~~~~~i~Ie~~D~~~~~~~~f~~l~~g~~vrL~~~~~-i~~~~~~ 397 (522)
T TIGR00440 321 DPVEVVIENLSD-E-YELATIPNHPNTPEFGERQVPFTNEFYIDRADFREEANKQYKRLVLGKEVRLRNAYV-IKAERVE 397 (522)
T ss_pred ccceEEEecCCC-C-ceEEeccCCCCChhHeeEEEEecceeEEEHHHhhccccccccccCCCCEEEeCCEEE-EEEEEEE
Confidence 999999999875 3 346789999999999999999999999999999999999999999999999999865 5689999
Q ss_pred ecCCCCEEEEEEEEcCC------CCCCCCceEEEeccC--CceeEEEEcccccCCCCCCCCCCCCCCccccCCCCceeEE
Q psy17575 709 TKCNGAITSIDVKATPV------DVDNKPKAFIHWVAR--PISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVS 780 (832)
Q Consensus 709 ~~~~g~v~e~~~~~~~~------~~~~k~k~~I~Wv~~--~~~~evr~y~~Lf~~~~p~~~~~~~~~~~~~iN~~S~~~~ 780 (832)
+|++|.|++++|++++. ++.+|+|++|||||+ .++||+|+|++||++++|++. ++|++++||+|+.+.
T Consensus 398 ~d~~G~v~~~~~~~~~~~~~~~~~~~kk~k~~IhWv~~~~~~~~evr~yd~Lf~~~~p~~~----d~~~~~~np~s~~~~ 473 (522)
T TIGR00440 398 KDAAGKITTIFCTYDNKTLGKEPADGRKVKGVIHWVSASSKYPTETRLYDRLFKVPNPGAP----DDFLSVINPESLVIK 473 (522)
T ss_pred ecCCCCEEEEEEEEccccccCCccccccCCcEEEeeecCCCeeEEEEecccccCCCCCCcc----ccHhhhCCCCceEEE
Confidence 99999999999999875 356888999999985 389999999999999999853 689999999999988
Q ss_pred EEEeecCccCCCCCCeEEeEEeeeEEEec-CCCCCCccEEEeeeccccCC
Q psy17575 781 IGYADSGFVGVKPYDRFQFERVGFFTVDR-DSNINHKPVVNLTVSLKEDS 829 (832)
Q Consensus 781 ~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~-~~~~~~~lv~n~~v~lk~~~ 829 (832)
.|++|++++++++|++|||||+||||||+ +++++ ++||||||+||++|
T Consensus 474 ~~~~E~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~-~~v~Nr~v~l~d~~ 522 (522)
T TIGR00440 474 QGFMEHSLGDAVANKRFQFEREGYFCLDSKESTTE-KVVFNRTVSLKDAT 522 (522)
T ss_pred EEEEchhHhhCCCCCEEEEEEeEEEEEccCCCCCC-CeEEEeeeecCCCC
Confidence 89999999999999999999999999995 66667 99999999999986
No 7
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=100.00 E-value=3.9e-139 Score=1182.29 Aligned_cols=492 Identities=32% Similarity=0.518 Sum_probs=459.5
Q ss_pred cCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCcccccchhH
Q psy17575 316 TGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYF 395 (832)
Q Consensus 316 ~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~~~~qSd~~ 395 (832)
++|+|+||||||||||||||||||||+||+|||++||+|+||||||||+|+.++|+++|++||+|||+.||++++||+||
T Consensus 8 ~~g~v~tRFAPsPtG~LHiGharaAlln~l~Ar~~gG~~iLRiEDTDp~R~~~e~~~~I~~dL~WLGl~wD~~~~qSdr~ 87 (523)
T PLN03233 8 IAGQIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIEDLGKIEIKPDSVSFTSDYF 87 (523)
T ss_pred CCCeEEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCccchHHHHHHHHHHHHhCCCCCCCccccccH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCccccCCCHHHHhccC--CCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCC---CCC
Q psy17575 396 HQLYEWAVKLIKKGLAYVCHQKSDEMKGFN--PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQD 470 (832)
Q Consensus 396 ~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~--~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~---~~D 470 (832)
+.||++|.+||++|+||+|+||+|||++.+ ..+|+||+++++|++++|++|++|.+.+|++++|+|+++.+. ++|
T Consensus 88 ~~y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~lR~K~d~~~~n~~~~D 167 (523)
T PLN03233 88 EPIRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDNGTLRD 167 (523)
T ss_pred HHHHHHHHHHHHcCCeEecCCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccCCCeEEEEeCcccCCCCCCcC
Confidence 999999999999999999999999998764 357899999999999999999999999899999999998653 489
Q ss_pred ceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccccCCCCccc
Q psy17575 471 PVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVV 550 (832)
Q Consensus 471 ~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~l~gtkL 550 (832)
||+||+...+|||+||+|++||||||||||||++|||||||||.||+++|++|.||+++||++.|.+|+|+|||+.|+||
T Consensus 168 ~Vi~R~d~~~h~~~Gd~~~~~PtY~fA~~VDD~l~gITHviRg~E~~~~t~~q~~l~~aLg~~~P~~~~f~rln~~~~kL 247 (523)
T PLN03233 168 PVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALGLRRPRIHAFARMNFMNTVL 247 (523)
T ss_pred CEEEEEcCCcccccCCcccceeccCCceeeeccccCCCeEEechhhhcCCHHHHHHHHHhCCCCCeeeeeEEECCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhhccCCCceeEEe--
Q psy17575 551 SKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVI-- 628 (832)
Q Consensus 551 SKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l~~~a~R~~av~-- 628 (832)
|||++.++|++|.|+||||||++||++||||||+||||+|||+.+|+|.+++.++|++||++||++||+.|||+|||.
T Consensus 248 SKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nR~~ld~~a~R~m~V~~~ 327 (523)
T PLN03233 248 SKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDWAKFWAENKKEIDKRAKRFMAIDKA 327 (523)
T ss_pred cccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCCCceecHHHHHHHHHHHhcccCCceEEEccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCcceEEeecCCCCcee-EEeecCCCCCCCCceeEEeecceeEEeCCccccccccCccccCCCCeeeeeecCceEEEeeE
Q psy17575 629 DPLPLHIVNFDQLNVDT-KFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKV 707 (832)
Q Consensus 629 dp~kl~i~N~~~~~~~~-~~~~p~~P~~~~~G~~~v~~~~~iyIe~~D~~~~~~~~~~rL~~~~~V~L~~~~~~~~~~~~ 707 (832)
+|++|+|+|++. +..+ .+++|+||++|++|+|+|+|+++||||++||+ +|+||++|+||+|||+ .|+++
T Consensus 328 ~pv~v~i~n~~~-~~~~~~~~~p~hP~~~~~G~r~v~~~~~iyIe~~D~~--------~l~~g~~vrL~~~~~i-~~~~~ 397 (523)
T PLN03233 328 DHTALTVTNADE-EADFAFSETDCHPKDPGFGKRAMRICDEVLLEKADTE--------DIQLGEDIVLLRWGVI-EISKI 397 (523)
T ss_pred CcEEEEecCCCC-ccceeccccccCCCCCCCceEEEEECCcEEEEHhHHh--------hcCCCCEEEeCceeeE-EEEEE
Confidence 699999999986 5433 35899999999999999999999999999996 6999999999999975 68888
Q ss_pred eecCCCCEEEEEEEEcCCCCCCCCceEEEeccC---CceeEEEEcccccCCCCCCCCCCCCCCccccCCCCceeEEEEEe
Q psy17575 708 NTKCNGAITSIDVKATPVDVDNKPKAFIHWVAR---PISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSIGYA 784 (832)
Q Consensus 708 ~~~~~g~v~e~~~~~~~~~~~~k~k~~I~Wv~~---~~~~evr~y~~Lf~~~~p~~~~~~~~~~~~~iN~~S~~~~~~~~ 784 (832)
++|.+|+++ +.++.+|+|++|||||+ .+++++++|++||++++|++. ++|+++|||+|+.+..|++
T Consensus 398 ~~d~~~~~~-------~~~d~~~~k~~I~Wv~~~~~~~~~~~~~yd~L~~~~~~~~~----~~~~~~~n~~S~~~~~~~~ 466 (523)
T PLN03233 398 DGDLEGHFI-------PDGDFKAAKKKISWIADVSDNIPVVLSEFDNLIIKEKLEED----DKFEDFINPDTLAETDVIG 466 (523)
T ss_pred EecCceEEe-------eCCCCcccccEEEEcCCCCCccceEEEecccccCCCCCCcc----cChhhhcCCCceEEEeEEE
Confidence 888777553 23456788889999984 389999999999999999753 6899999999999999999
Q ss_pred ecCccCCCCCCeEEeEEeeeEEEecC-CCCCCccEEEeeeccccC
Q psy17575 785 DSGFVGVKPYDRFQFERVGFFTVDRD-SNINHKPVVNLTVSLKED 828 (832)
Q Consensus 785 e~~~~~~~~~~~~QfeR~Gyf~~D~~-~~~~~~lv~n~~v~lk~~ 828 (832)
|+++.++++|++|||||+|||+||+. ++++..+||+.|..-|..
T Consensus 467 e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~~~~~~~ipdg~~k 511 (523)
T PLN03233 467 DAGLKTLKEHDIIQLERRGFYRVDRPYMGEEKPLILFMIPDGKKK 511 (523)
T ss_pred chhHhhCCCCCeEEEEEeeEEEEccCCCCCCceEEEEECCCCCcc
Confidence 99999999999999999999999984 555545699988876654
No 8
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.4e-136 Score=1168.33 Aligned_cols=496 Identities=34% Similarity=0.517 Sum_probs=466.7
Q ss_pred cCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCc-ccccchh
Q psy17575 316 TGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ-ITHSSDY 394 (832)
Q Consensus 316 ~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~-~~~qSd~ 394 (832)
++|+|+||||||||||||||||||||+||++||++||+|+||||||||+|+.++|+++|++||+|||+.||+ ++|||+|
T Consensus 49 ~~~~v~tRFAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRiEDTDp~R~~~e~~d~IleDL~WLGl~wDe~~~~QSdr 128 (601)
T PTZ00402 49 EEGKVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFEQAILDDLATLGVSWDVGPTYSSDY 128 (601)
T ss_pred CCCeeEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCcccCHHHHHHHHHHHHHCCCCCCCceeecccc
Confidence 467899999999999999999999999999999999999999999999999999999999999999999996 8999999
Q ss_pred HHHHHHHHHHHHHcCCccccCCCHHHHhccC--CCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCC---CC
Q psy17575 395 FHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN--PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQ 469 (832)
Q Consensus 395 ~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~--~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~---~~ 469 (832)
|+.||++|.+||++|+||+|+||+|+|++.+ +.+|+||+++++|++.+|+.|++|.+.+|.+++|+|+++.++ ++
T Consensus 129 ~d~y~e~a~~Li~~G~AY~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~lR~kid~~~~n~~~r 208 (601)
T PTZ00402 129 MDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETCLRAKISVDNENKAMR 208 (601)
T ss_pred HHHHHHHHHHHHHcCCEEEecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceEEEEecccCCCCCCcc
Confidence 9999999999999999999999999997653 578999999999999999999999888889999999998764 58
Q ss_pred CceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccccCCCCcc
Q psy17575 470 DPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTV 549 (832)
Q Consensus 470 D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~l~gtk 549 (832)
|||+||+...+|+|+||+|++||||||||||||++|||||||||.||+++|++|.||+++||++.|.+|+|++|+++|++
T Consensus 209 D~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg~~~P~~~h~~rLn~~g~k 288 (601)
T PTZ00402 209 DPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALGIRKPIVEDFSRLNMEYSV 288 (601)
T ss_pred CCEEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHHhCCCCceEEEEeeEcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhhccCCCceeEEec
Q psy17575 550 VSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVID 629 (832)
Q Consensus 550 LSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l~~~a~R~~av~d 629 (832)
||||++.++|++|+|.||||||++||++|||||++|+||++||..+|+|++++.|+|++||++||++|++.|||+|||+|
T Consensus 289 LSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gvsk~~~~~d~~~L~~~nr~~l~~~a~R~maV~~ 368 (601)
T PTZ00402 289 MSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEWSKLWYFNTQILDPSVPRYTVVSN 368 (601)
T ss_pred ccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHhhcCCceEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEeecCCCCceeEEeecCCCCCCCCceeEEeecceeEEeCCccccccccCccccCCCCeeeeeecCceEEEeeEe-
Q psy17575 630 PLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVN- 708 (832)
Q Consensus 630 p~kl~i~N~~~~~~~~~~~~p~~P~~~~~G~~~v~~~~~iyIe~~D~~~~~~~~~~rL~~~~~V~L~~~~~~~~~~~~~- 708 (832)
|++|+|+|.++ +..+.+++|+||++|++|+|+++|+++||||++||+ ||+||++|+||+|||++ |.++.
T Consensus 369 p~kv~i~~~~~-~~~~~~~~p~hP~~~~~G~r~i~~~~~iyIe~~D~~--------~l~~g~~vrL~~~gn~~-i~~~~~ 438 (601)
T PTZ00402 369 TLKVRCTVEGQ-IHLEACEKLLHKKVPDMGEKTYYKSDVIFLDAEDVA--------LLKEGDEVTLMDWGNAY-IKNIRR 438 (601)
T ss_pred CCEEEEEECCC-CcceEeeccCCCCCcccCceEEEECCeEEEEhhhHh--------hcCCCCEEEEeccCCEE-EEEEEe
Confidence 99999999887 666788999999999999999999999999999986 79999999999999975 44443
Q ss_pred ecCCCCEEEEEEEEcCCCCCCCCceEEEeccCC---ceeEEEEcccccCCCCCCCCCCCCCCccccCCCCceeEEEEEee
Q psy17575 709 TKCNGAITSIDVKATPVDVDNKPKAFIHWVARP---ISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSIGYAD 785 (832)
Q Consensus 709 ~~~~g~v~e~~~~~~~~~~~~k~k~~I~Wv~~~---~~~evr~y~~Lf~~~~p~~~~~~~~~~~~~iN~~S~~~~~~~~e 785 (832)
++.+|+|++++|++++.++.+|+|++|||||.. +++++|+|++||++++|++. ++|++.+||+|+.+..|++|
T Consensus 439 ~~~~g~v~~~~~~~~~~~~~kk~k~~IhWv~~~~~~~~~~~r~yd~Lf~~~~p~~~----~~~~~~ln~~s~~~~~~~~E 514 (601)
T PTZ00402 439 SGEDALITDADIVLHLEGDVKKTKFKLTWVPESPKAEVMELNEYDHLLTKKKPDPE----ESIDDIIAPVTKYTQEVYGE 514 (601)
T ss_pred eCCCCcEEEEEEEECCCCCCCcCCCeEEEecCCCCcceEEEEecccccCCCCCCcc----ccHHHhcCCCChheEEEEEc
Confidence 457899999999999988889999999999863 68999999999999999753 57999999999999889999
Q ss_pred cCccCCCCCCeEEeEEeeeEEEecCCCCCCccEEEeeeccccC
Q psy17575 786 SGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKED 828 (832)
Q Consensus 786 ~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~lv~n~~v~lk~~ 828 (832)
+++.++++|++|||||+|||+||+++ ++ .||..|..-|..
T Consensus 515 ~~~~~~~~~~~~QfeR~Gyf~~D~~~-~~--~vl~~ipdg~~~ 554 (601)
T PTZ00402 515 EALSVLKKGDIIQLERRGYYIVDDVT-PK--KVLIAIPDGREK 554 (601)
T ss_pred hhHhhCCCCCEEeEEEeEEEEEecCC-CC--eEEEECCCCccc
Confidence 99999999999999999999999854 33 488877776644
No 9
>PLN02907 glutamate-tRNA ligase
Probab=100.00 E-value=4.5e-134 Score=1186.60 Aligned_cols=493 Identities=30% Similarity=0.509 Sum_probs=467.4
Q ss_pred CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCcccccchhHH
Q psy17575 317 GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFH 396 (832)
Q Consensus 317 ~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~~~~qSd~~~ 396 (832)
+|+|+||||||||||||||||||||+||+|||++||+|+||||||||+|+.++|+++|++||+|||++||++++||+||+
T Consensus 211 ~~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLR~eDTdp~r~~~e~~~~I~~dl~wLG~~~d~~~~qS~r~~ 290 (722)
T PLN02907 211 EGKVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDTNPSKESDEFVENILKDIETLGIKYDAVTYTSDYFP 290 (722)
T ss_pred CCceEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCcCChHHHHHHHHHHHHcCCCCCCcccccccHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCccccCCCHHHHhccC--CCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCC---CCCc
Q psy17575 397 QLYEWAVKLIKKGLAYVCHQKSDEMKGFN--PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQDP 471 (832)
Q Consensus 397 ~~ye~A~~Li~~G~AY~C~Cs~eel~~~~--~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~---~~D~ 471 (832)
.||++|.+||++|+||+|+|+++++++.+ +.+|+||+++++||+++|++|++|.+.+++++||+|+|+.++ ++|+
T Consensus 291 ~y~~~a~~Li~~G~aY~~~~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~lR~k~d~~~~n~~~~D~ 370 (722)
T PLN02907 291 QLMEMAEKLIKEGKAYVDDTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRDP 370 (722)
T ss_pred HHHHHHHHHHHcCCeeecCCCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEEcccCCCCCCcccC
Confidence 99999999999999999999999998653 578999999999999999999999999999999999998764 4899
Q ss_pred eEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccccCCCCcccc
Q psy17575 472 VAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVVS 551 (832)
Q Consensus 472 V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~l~gtkLS 551 (832)
|+||+...+|+|+||+|++|||||||||||||+|||||||||.||++|+++|+||+++||++.|.+|+|+|||++|++||
T Consensus 371 v~~R~~~~~h~~~gd~~~~~PtY~fa~~vdD~~~gIThvlRg~e~~~~t~~q~~l~~~lg~~~p~~~~f~~l~~~~~~lS 450 (722)
T PLN02907 371 VYYRCNPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMGLRKVHIWEFSRLNFVYTLLS 450 (722)
T ss_pred EEEEecCCcccccCCccceeeccCCceEEEcccCCCceEeecHhhhhChHHHHHHHHHcCCCCCeeEEEEEEcCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhhccCCCceeEEecC-
Q psy17575 552 KRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDP- 630 (832)
Q Consensus 552 KRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l~~~a~R~~av~dp- 630 (832)
||++.++|++|+|+||||||++|++++|||||+|+||++||..+|+|++++.|+|++||++||++||+.|||+|||+||
T Consensus 451 KR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s~~~~~~~~~~l~~~nr~~id~~a~R~~~v~~p~ 530 (722)
T PLN02907 451 KRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVLKEG 530 (722)
T ss_pred ccchHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCCcCCccccHHHHHHHHHHHhccCCCceeEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -cceEEeecCCCCceeEEeecCCCCCCCCceeEEeecceeEEeCCccccccccCccccCCCCeeeeeecCceEEEeeEee
Q psy17575 631 -LPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNT 709 (832)
Q Consensus 631 -~kl~i~N~~~~~~~~~~~~p~~P~~~~~G~~~v~~~~~iyIe~~D~~~~~~~~~~rL~~~~~V~L~~~~~~~~~~~~~~ 709 (832)
++|+|+|+++ .++.+++|+||+|+++|+|+|+|+++||||++||+ +|+||++|+||+|||++ |+++.+
T Consensus 531 ~v~~~i~~~~~--~~~~~~~p~hp~~~~~g~r~~~~~~~i~i~~~D~~--------~l~~g~~v~L~~~~~~~-i~~~~~ 599 (722)
T PLN02907 531 RVLLTLTDGPE--TPFVRIIPRHKKYEGAGKKATTFTNRIWLDYADAE--------AISEGEEVTLMDWGNAI-IKEITK 599 (722)
T ss_pred EEEEEEcCCCC--CceeeeccCCCCCCccceEEEEECCcEEEEcchHh--------hcCCCCEEEEcccCCEE-EEEEEE
Confidence 8888999875 36788999999999999999999999999999997 48899999999999976 778889
Q ss_pred cCCCCEEEEEEEEcCCCCCCCCceEEEeccC---CceeEEEEcccccCCCCCCCCCCCCCCccccCCCCceeEEEEEeec
Q psy17575 710 KCNGAITSIDVKATPVDVDNKPKAFIHWVAR---PISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSIGYADS 786 (832)
Q Consensus 710 ~~~g~v~e~~~~~~~~~~~~k~k~~I~Wv~~---~~~~evr~y~~Lf~~~~p~~~~~~~~~~~~~iN~~S~~~~~~~~e~ 786 (832)
|++|+|+++.|++++.++.+|+|++|||||+ .+++++++|++||++++|++. ++|+++|||+|+.+..|++|+
T Consensus 600 ~~~g~v~~~~~~~~~~~~~~k~k~~i~Wv~~~~~~~~~~~~~~d~l~~~~~~~~~----~~~~~~~n~~s~~~~~~~~e~ 675 (722)
T PLN02907 600 DEGGAVTALSGELHLEGSVKTTKLKLTWLPDTNELVPLSLVEFDYLITKKKLEED----DNFLDVLNPCTKKETAALGDS 675 (722)
T ss_pred CCCCcEEEEEEEEccccCCCcCCCeEEEecCCCCceEEEEEccccccccCCCccc----cchhHhcCCCceeEEEEEEcH
Confidence 9999999999999999888999999999985 379999999999999999754 689999999999999999999
Q ss_pred CccCCCCCCeEEeEEeeeEEEecC-CCCCCccEEEeeec
Q psy17575 787 GFVGVKPYDRFQFERVGFFTVDRD-SNINHKPVVNLTVS 824 (832)
Q Consensus 787 ~~~~~~~~~~~QfeR~Gyf~~D~~-~~~~~~lv~n~~v~ 824 (832)
++.++++|++|||||+|||+||+. ++++..+||-.|..
T Consensus 676 ~~~~~~~~~~~QfeR~Gy~~~D~~~~~~~~~~~~~~ip~ 714 (722)
T PLN02907 676 NMRNLKRGEIIQLERKGYYRCDAPFVRSSKPIVLFAIPD 714 (722)
T ss_pred hHhhCCCCCeEEEEEeEEEEECcCCCCCCceEEEEECCC
Confidence 999999999999999999999984 44553567865554
No 10
>KOG1147|consensus
Probab=100.00 E-value=6.7e-122 Score=1009.39 Aligned_cols=497 Identities=34% Similarity=0.564 Sum_probs=464.5
Q ss_pred cCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCcccccchhH
Q psy17575 316 TGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYF 395 (832)
Q Consensus 316 ~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~~~~qSd~~ 395 (832)
..|+|+|||||+|+||||||||+|||+|++||.+++|++|+|||||||++|.++|.+.|++||..|||+||.++|+||||
T Consensus 197 e~GkVv~RFPPEpSGyLHIGHAKAALLNqYfa~~~~G~LIvRFDDTNPaKE~~eFe~~IleDl~~LgIkpd~~TyTSDyF 276 (712)
T KOG1147|consen 197 EMGKVVTRFPPEPSGYLHIGHAKAALLNQYFAQAYQGKLIVRFDDTNPAKENEEFEDVILEDLSLLGIKPDRVTYTSDYF 276 (712)
T ss_pred ccCceEEecCCCCCceeehhhHHHHHHHHHHHHhcCceEEEEecCCCcchhhHHHHHHHHHHHHHhCcCcceeeechhhH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCccccCCCHHHHhcc--CCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCC---CCC
Q psy17575 396 HQLYEWAVKLIKKGLAYVCHQKSDEMKGF--NPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQD 470 (832)
Q Consensus 396 ~~~ye~A~~Li~~G~AY~C~Cs~eel~~~--~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~---~~D 470 (832)
+.+++++++||+.|+||++..+.|+|+.. .+.+|.||++++||||++|++|..|....-.+|+|+|+||.++ ++|
T Consensus 277 ~~i~dycv~likeGKAYvDDTp~E~Mr~ER~~gv~Sk~R~~~vEenl~iw~EM~kGs~~Gl~~CvRaKIdm~s~NkaMRD 356 (712)
T KOG1147|consen 277 DEIMDYCVKLIKEGKAYVDDTPTEQMRDEREQGVESKCRSNSVEENLRIWEEMKKGSEKGLKCCVRAKIDMSSPNKAMRD 356 (712)
T ss_pred HHHHHHHHHHHhcCcccccCCcHHHHHHHHhccccccccCCCHHHHHHHHHHHhccchhhhhhheeeeecccCCCccccC
Confidence 99999999999999999999999999864 4578999999999999999999999755446899999999885 489
Q ss_pred ceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccccCCCCccc
Q psy17575 471 PVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVV 550 (832)
Q Consensus 471 ~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~l~gtkL 550 (832)
||+|||...||||||++|.|||||||||+|+|+++||||.||+.|+.++.++|+|++++||+++|..|+|+|||+.+|+|
T Consensus 357 PviYRcn~~pHhRTG~KYkvYPTYDFaCPIVDslEGVThaLRttEYhDRn~Qyyw~i~al~LRkp~iwefsRlN~~nTvL 436 (712)
T KOG1147|consen 357 PVIYRCNPEPHHRTGDKYKVYPTYDFACPIVDSLEGVTHALRTTEYHDRNAQYYWFIDALGLRKPHIWEFSRLNFVNTVL 436 (712)
T ss_pred CeeEecCCCCCCcCCCceeeecccccccccchhhhhhhhhhhhhhccccchHHHHHHHHhcCCccceeehhhhhhHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhhccCCCceeEEecC
Q psy17575 551 SKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDP 630 (832)
Q Consensus 551 SKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l~~~a~R~~av~dp 630 (832)
||||+.++|++|+|+||||||++|+++.+|||++.|+|++|+..+|.|++-.+++|+.+|+||+++|||.|||++||..+
T Consensus 437 SKRKLtwfVd~GlV~GWDDPRfpTVrGv~RrGmtvEgLkqfIl~QG~Sk~v~~meWdkiWAfNKKvIDPVapRytav~~~ 516 (712)
T KOG1147|consen 437 SKRKLTWFVDEGLVDGWDDPRFPTVRGVRRRGMTVEGLKQFILAQGPSKNVVTMEWDKIWAFNKKVIDPVAPRYTAVVKE 516 (712)
T ss_pred hhhheeeeeccCcccCCCCCCcchhHHHHHcCccHHHHHHHHHHhCCccceeeeehHhhhhhcccccCCCCccceeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred c--ceEEeecCCCCceeEEeecCCCCCCCCceeEEeecceeEEeCCccccccccCccccCCCCeeeeeecCceEEEeeEe
Q psy17575 631 L--PLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVN 708 (832)
Q Consensus 631 ~--kl~i~N~~~~~~~~~~~~p~~P~~~~~G~~~v~~~~~iyIe~~D~~~~~~~~~~rL~~~~~V~L~~~~~~~~~~~~~ 708 (832)
. .+++.|.|. .+..-..|.||+||+.|.++|.|++.||||+.|++. |..|++|+||+|||++ |+++.
T Consensus 517 ~~V~v~i~~~~~--~~~~~~~PkHkKn~~lG~K~v~~~~~I~le~~Da~~--------l~~gEevTlmnWGN~~-i~ki~ 585 (712)
T KOG1147|consen 517 DRVEVTITNGPQ--EEYIEVSPKHKKNPELGEKKVIYSKKILLEQADAEA--------LKEGEEVTLMNWGNAI-IKKIN 585 (712)
T ss_pred ceEEEecCCCCC--cchhhccccCCCCcccCccceeeccceeEeccchhh--------hcCCcEEEEEecccee-eEEee
Confidence 4 455667654 223335789999999999999999999999999986 5679999999999986 89999
Q ss_pred ecCCCCEEEEEEEEcCCCCCCCCceEEEeccC---CceeEEEEcccccCCCCCCCCCCCCCCccccCCCCceeEEEEEee
Q psy17575 709 TKCNGAITSIDVKATPVDVDNKPKAFIHWVAR---PISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSIGYAD 785 (832)
Q Consensus 709 ~~~~g~v~e~~~~~~~~~~~~k~k~~I~Wv~~---~~~~evr~y~~Lf~~~~p~~~~~~~~~~~~~iN~~S~~~~~~~~e 785 (832)
+|.+|+||.+.++++++++.+|+|.+++|+++ .+++.+..|++|++++..+++ ++|.+++||||.....+++|
T Consensus 586 kd~sg~vtsl~a~LnldgDfKkTk~KlTWLadt~~~vpv~lv~fd~lItK~~le~d----Ed~k~f~n~~t~~~~~~~gd 661 (712)
T KOG1147|consen 586 KDASGKVTSLSAKLNLDGDFKKTKLKLTWLADTNDSVPVDLVDFDHLITKDKLEKD----EDFKDFVNPNTVKETLMLGD 661 (712)
T ss_pred ccCCceEEEEEEEeccCCccccccceeEEeccCCCccceEEeechhhcchhhcccc----hhHHHhcCCCccccchhccC
Confidence 99999999999999999999999999999996 389999999999998877764 68999999999999999999
Q ss_pred cCccCCCCCCeEEeEEeeeEEEec-CCCCCCccEEEeeecccc
Q psy17575 786 SGFVGVKPYDRFQFERVGFFTVDR-DSNINHKPVVNLTVSLKE 827 (832)
Q Consensus 786 ~~~~~~~~~~~~QfeR~Gyf~~D~-~~~~~~~lv~n~~v~lk~ 827 (832)
++++++|.||+|||||.|||+||. -+..+..+||+-|..-|.
T Consensus 662 ~~ikn~KkGDIIQ~eRkGfy~~D~p~~~~~~p~Vlf~IPdg~t 704 (712)
T KOG1147|consen 662 PAIKNLKKGDIIQLERKGFYICDVPLPKDGKPLVLFSIPDGKT 704 (712)
T ss_pred hhhhccccCceEEEeccceEEeccccCCCCCcEEEEECCCCCc
Confidence 999999999999999999999997 455555899998876553
No 11
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.8e-120 Score=1040.79 Aligned_cols=449 Identities=34% Similarity=0.547 Sum_probs=418.1
Q ss_pred CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCc--ccccHHHHHHHHHHHHHcCCCcCcccccchh
Q psy17575 317 GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNP--EKEEEKFFTGIKDMVQWLGYKPYQITHSSDY 394 (832)
Q Consensus 317 ~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp--~r~~~e~~~~I~edL~WLGl~pd~~~~qSd~ 394 (832)
+|+|+|||||||||||||||||||++||+|||++||+|+|||||||| +|+.++|+++|++||+|||+.||++++||+|
T Consensus 99 ~g~V~tRFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDTDpk~~R~~~e~~~~I~edL~wLGl~wD~~~~qSdr 178 (567)
T PRK04156 99 KGKVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDPEAYDMILEDLKWLGVKWDEVVIQSDR 178 (567)
T ss_pred CCeEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccCCCCcccchHHHHHHHHHHHHHcCCCCCCccCcccC
Confidence 67899999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCccccCCCHHHHhccC--CCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCC---CC
Q psy17575 395 FHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN--PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQ 469 (832)
Q Consensus 395 ~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~--~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~---~~ 469 (832)
|+.||++|.+||++|+||+|+||++++++.+ +.+|+||++++++++++|++|.+|.+.+|+++||+|+|+.+. ++
T Consensus 179 ~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n~~~r 258 (567)
T PRK04156 179 LEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNPSVR 258 (567)
T ss_pred HHHHHHHHHHHHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCCCCcc
Confidence 9999999999999999999999999998653 468999999999999999999999999999999999998653 48
Q ss_pred CceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccccCCCCcc
Q psy17575 470 DPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTV 549 (832)
Q Consensus 470 D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~l~gtk 549 (832)
|+|+||+...+|+|+|++|+||||||||||||||+|||||||||.||++|+++|.||+++|||..|.++||++|+++|+|
T Consensus 259 D~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg~~~P~~~H~~~L~~~g~k 338 (567)
T PRK04156 259 DWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFGWEYPETIHYGRLKIEGFV 338 (567)
T ss_pred ccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHHHHHHcCCCCceEEEcceecCCCce
Confidence 99999999899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhhccCCCceeEEec
Q psy17575 550 VSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVID 629 (832)
Q Consensus 550 LSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l~~~a~R~~av~d 629 (832)
||||+++++|++|.|+||||||++||++||++|++|+||++||+.+||+.+++.|+|+.|+++||++||+.|+|+|||.|
T Consensus 339 LSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~s~~~~~~~~~~L~~~nr~~ld~~a~R~~~V~~ 418 (567)
T PRK04156 339 LSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKETDATISWENLYAINRKLIDPIANRYFFVRD 418 (567)
T ss_pred eecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHhccCCceEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEeecCCCCceeEEeecCCCCCCCCceeEEeecceeEEeCCccccccccCccccCCCCeeeeeecCceEEEeeEee
Q psy17575 630 PLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNT 709 (832)
Q Consensus 630 p~kl~i~N~~~~~~~~~~~~p~~P~~~~~G~~~v~~~~~iyIe~~D~~~~~~~~~~rL~~~~~V~L~~~~~~~~~~~~~~ 709 (832)
|++|+|+|.+. .++++|+||+++++|+|+|+|+++||||++||++. |+.|+||+|||+. |+++.
T Consensus 419 pv~v~i~~~~~----~~~~~p~hP~~~~~G~r~v~~~~~i~i~~~D~~~~----------g~~vrL~~~~nv~-~~~~~- 482 (567)
T PRK04156 419 PVELEIEGAEP----LEAKIPLHPDRPERGEREIPVGGKVYVSSDDLEAE----------GKMVRLMDLFNVE-ITGVS- 482 (567)
T ss_pred ceEEEEcCCCc----eEEEcCCCCCCCCCceEEEEECCeEEEEHHHHhhc----------CCEEEeeeEEEEE-EEEEE-
Confidence 99999999643 78899999999999999999999999999999854 8999999999874 55542
Q ss_pred cCCCCEEEEEEEEcCC--CCCCCCc-eEEEeccCC--ceeEEEEcccccCCCCCCCCCCCCCCccccCCCCceeEEEEEe
Q psy17575 710 KCNGAITSIDVKATPV--DVDNKPK-AFIHWVARP--ISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSIGYA 784 (832)
Q Consensus 710 ~~~g~v~e~~~~~~~~--~~~~k~k-~~I~Wv~~~--~~~evr~y~~Lf~~~~p~~~~~~~~~~~~~iN~~S~~~~~~~~ 784 (832)
+++|++++. ++++|++ .+|||||.. ++++|+. | ++ .+..|++
T Consensus 483 -------~~~~~~~~~~~~~~~k~~~~~i~Wv~~~~~v~~~v~~---------~-------~~----------~~~~g~~ 529 (567)
T PRK04156 483 -------VDKARYHSDDLEEARKNKAPIIQWVPEDESVPVRVLK---------P-------DG----------GDIEGLA 529 (567)
T ss_pred -------EEEEEEcCCccccccccCCCEEEEccCCCCeeEEEEC---------C-------Cc----------eEEEEEE
Confidence 467777665 4677887 499999964 7888885 2 11 3456999
Q ss_pred ecCccCCCCCCeEEeEEeeeEEEecCCCCC
Q psy17575 785 DSGFVGVKPYDRFQFERVGFFTVDRDSNIN 814 (832)
Q Consensus 785 e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~ 814 (832)
|+++.++++|++|||||+|||+||+..+++
T Consensus 530 E~~~~~~~~~~~~QfeR~Gf~~~D~~~~~~ 559 (567)
T PRK04156 530 EPDVADLEVDDIVQFERFGFVRIDSVEDDE 559 (567)
T ss_pred chhHhhCCCCCEEEEEEeEEEEEecCCCCe
Confidence 999999999999999999999999975433
No 12
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=100.00 E-value=1.7e-120 Score=1039.62 Aligned_cols=459 Identities=30% Similarity=0.494 Sum_probs=416.6
Q ss_pred CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCcccccchhHH
Q psy17575 317 GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFH 396 (832)
Q Consensus 317 ~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~~~~qSd~~~ 396 (832)
.|+||||||||||||||||||||||+||+||+++||+|+||||||||+|+.++|+++|++||+|||+.||.+++||+||+
T Consensus 91 ~~~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidDTDp~R~~~e~~~~I~edL~wLGi~~d~~~~qSd~~~ 170 (560)
T TIGR00463 91 MGEVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDDTDPRRVKPEAYDMILEDLDWLGVKGDEVVYQSDRIE 170 (560)
T ss_pred CCeeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCcCCcccccHHHHHHHHHHHHHcCCCCCccccccccHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCccccCCCHHHHhccC--CCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCC---CCCc
Q psy17575 397 QLYEWAVKLIKKGLAYVCHQKSDEMKGFN--PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQDP 471 (832)
Q Consensus 397 ~~ye~A~~Li~~G~AY~C~Cs~eel~~~~--~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~---~~D~ 471 (832)
.||++|.+||++|+||+|+||+++|++.+ +.+|+||+++++|++++|++|++|.+.+++++||+|+|+.++ ++|+
T Consensus 171 ~y~~~a~~Li~~G~AY~C~cs~eei~~~r~~g~~~~cR~~s~eenl~~fe~m~~g~~~~~~~~lR~K~d~~~~n~~~rD~ 250 (560)
T TIGR00463 171 EYYDYCRKLIEMGKAYVCDCPPEEFRELRNDGVACACRDRSVEENLEIWEEMLNGTEEGGKVVVRAKTDYKHKNPAIRDW 250 (560)
T ss_pred HHHHHHHHHHHcCCceeecCCHHHHHHHHhCCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEECCCcCCCccccCc
Confidence 99999999999999999999999998653 578999999999999999999999999999999999998654 4899
Q ss_pred eEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccccCCCC-ccc
Q psy17575 472 VAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNY-TVV 550 (832)
Q Consensus 472 V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~l~g-tkL 550 (832)
|+||+..+||+|+||+|++||||||||||||++|||||||||.||++||++|.+++.+|||..|.+++|+++.+.+ .+|
T Consensus 251 V~~R~~~~~h~~~Gd~~~~~PtYdfA~~VDD~l~gITHviRg~E~~~nT~rq~yl~~~lg~~~P~~~h~~~l~~~~~~kL 330 (560)
T TIGR00463 251 VIFRINKTPHPRTGDKYKVYPTMDFSVPIDDHLLGVTHVLRGKDHIDNERKQQYIYMYFGWELPEFIHWGRLKINDVRTL 330 (560)
T ss_pred EEEEecCCCccccCCEEEEEeccccceEeecccCCCCeEEechhhhcCCHHHHHHHHHcCCCCCeEEEEcceecCCCcEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999877777666654 478
Q ss_pred chhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhhccCCCceeEEecC
Q psy17575 551 SKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDP 630 (832)
Q Consensus 551 SKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l~~~a~R~~av~dp 630 (832)
|||.....+.+|.|+||||||++||++||+||++|+||++||..+|||.+++.++|+.||++||++||+.|||+|||.||
T Consensus 331 skk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nr~~id~~a~R~~~V~~p 410 (560)
T TIGR00463 331 STSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSIGVKRNDVNLSWKNIYAFNKKIIDPIARRYFFIWNP 410 (560)
T ss_pred cchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHhCCCCCCceeeHHHHHHHHHHHhCcCCCceEEEcCC
Confidence 87766666666999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEeecCCCCceeEEeecCCCCCCCCceeEEeecceeEEeCCccccccccCccccCCCCeeeeeecCceEEEeeEeec
Q psy17575 631 LPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTK 710 (832)
Q Consensus 631 ~kl~i~N~~~~~~~~~~~~p~~P~~~~~G~~~v~~~~~iyIe~~D~~~~~~~~~~rL~~~~~V~L~~~~~~~~~~~~~~~ 710 (832)
++|+|+|+++ ..++++|+||++|++|+|+|+|+++||||++||++ +||++|+||+|||++ |+++.+
T Consensus 411 ~~v~i~~~~~---~~~~~~p~hp~~~~~G~r~v~~~~~i~i~~~D~~~---------~~g~~vrL~~~~ni~-~~~~~~- 476 (560)
T TIGR00463 411 VKIEIEGAPE---PKIVERPLHPDNPEVGERKLIYYGEIYVDKDDLEV---------IEGEEVRLMDWGNVI-ITKKND- 476 (560)
T ss_pred cEEEEecCCC---CeeEEccCCCCCCCCceEEEEECCeEEEEHHHHhh---------CCCCEEEEeecccEE-EEEEeC-
Confidence 9999999874 25568999999999999999999999999999973 589999999999975 666543
Q ss_pred CCCCEEEEEEEEcCCCCCCCCceEEEeccC--CceeEEEEcccccCCCCCCCCCCCCCCccccCCCCceeEEEEEeecCc
Q psy17575 711 CNGAITSIDVKATPVDVDNKPKAFIHWVAR--PISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSIGYADSGF 788 (832)
Q Consensus 711 ~~g~v~e~~~~~~~~~~~~k~k~~I~Wv~~--~~~~evr~y~~Lf~~~~p~~~~~~~~~~~~~iN~~S~~~~~~~~e~~~ 788 (832)
+|.+ .+..+..++.+|++++|||||+ .++++++.|++|++ ++++|+++
T Consensus 477 -~~~~---~~~~~~~~~~~~~~~~i~Wv~~~~~v~~~~~~~d~l~~--------------------------~~~~E~~~ 526 (560)
T TIGR00463 477 -DGSM---YHSLNLEGARKKGKHIIHWLPDKDAVKVKVIMPDHLIT--------------------------EGRLEEDA 526 (560)
T ss_pred -CCcE---EeccccccccccCCCEEEECcCCCceEEEEEcCccccc--------------------------cCccCcch
Confidence 3432 3445555666778889999986 48999999887753 36678888
Q ss_pred cCCCCCCeEEeEEeeeEEEecCCCCCCccEE
Q psy17575 789 VGVKPYDRFQFERVGFFTVDRDSNINHKPVV 819 (832)
Q Consensus 789 ~~~~~~~~~QfeR~Gyf~~D~~~~~~~~lv~ 819 (832)
...++||+|||||+|||+||+...++...||
T Consensus 527 ~~~~~~~~vQfeR~Gy~~~D~~~~~~~~~~f 557 (560)
T TIGR00463 527 SFEEVGDIIQFERFGFYRLDSADKDGKVYVY 557 (560)
T ss_pred hhcCCCCEEEEEEeEEEEEccCCCCCceEEE
Confidence 7889999999999999999998655546777
No 13
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.9e-92 Score=791.36 Aligned_cols=443 Identities=33% Similarity=0.468 Sum_probs=373.6
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCc-ccccchhHHHH
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ-ITHSSDYFHQL 398 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~-~~~qSd~~~~~ 398 (832)
||||||||||||||||||||||+||+|||++||+||||||||||+|+.++|+++|+++|+|||++||+ ++|||+||+.|
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~~G~fiLRiEDTD~~R~~~e~~~~I~~~L~WLGl~wde~~~~QS~r~~~Y 89 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDTDPERETPEAEDAILEDLEWLGLDWDEGPYYQSERFDIY 89 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHHhcCCCCCCceeehhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred HHHHHHHHHcCCccccCCCHHHHhccC------C-CC-CCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCC---
Q psy17575 399 YEWAVKLIKKGLAYVCHQKSDEMKGFN------P-LP-SPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG--- 467 (832)
Q Consensus 399 ye~A~~Li~~G~AY~C~Cs~eel~~~~------~-~~-~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~--- 467 (832)
|++|.+||++|+||+|+||+|||++++ + .| +.+|+ +++|..|+.|..... ++++++|+|+|+.+.
T Consensus 90 ~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~---~~~L~~~~~~~~~~~-~~~~viR~k~~~~~~~~~ 165 (472)
T COG0008 90 YEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRD---ERNLTLFEKMADLGE-GGPAVVRLKIPMAHPGPV 165 (472)
T ss_pred HHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCch---hhccchHHHHhhccc-CCCeEEEEeCCCCCCCCc
Confidence 999999999999999999997776542 1 23 55554 678999999988322 678999999996532
Q ss_pred CCCceEEEeeeCC-CCC-CCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccccCC
Q psy17575 468 KQDPVAYRIKFLP-HHR-TGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNV 545 (832)
Q Consensus 468 ~~D~V~~Ri~~~~-h~r-~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~l 545 (832)
+.|+|.|||.+.+ |++ ++.+|.+|||||||||||||+|||||||||+||++|||+|.||+++|||+.|.++||+++..
T Consensus 166 ~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg~~~P~~~H~~li~~ 245 (472)
T COG0008 166 FRDLVRGRIVFAPKHPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLN 245 (472)
T ss_pred cccceeeeEecCccCCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcCCCCCcEEEeeeeec
Confidence 5899999999998 988 89999999999999999999999999999999999999999999999999998777766654
Q ss_pred -CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhhccCCCce
Q psy17575 546 -NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRV 624 (832)
Q Consensus 546 -~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l~~~a~R~ 624 (832)
+|.|||||++...+....+.||+|||+.|+.+++++|++|+++..|+...|++..+....+..+++|+++.|+..++|+
T Consensus 246 ~~g~kLSKr~~~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~~~~~~~fd~~~~~~~~~~fd~~kL~~~n~ry 325 (472)
T COG0008 246 EDGKKLSKRKGAVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLTIVSKSPAAFDRKKLDWLNPRY 325 (472)
T ss_pred CCCCeecCccCccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHHHHHHHhhhhhhhhhcccccccHHHhHhhhHHH
Confidence 4569999999766666689999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCcceEEeecCCCCceeEEeecCCCCCCCCceeEEeecc--eeEEeCCccccccccCccccCCCCeeeeeecCceE
Q psy17575 625 MVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDR--TIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVL 702 (832)
Q Consensus 625 ~av~dp~kl~i~N~~~~~~~~~~~~p~~P~~~~~G~~~v~~~~--~iyIe~~D~~~~~~~~~~rL~~~~~V~L~~~~~~~ 702 (832)
|++ +|+++.+.|.+.........+|+ ++++|.+.+++.+ .+||++.|+....+ +++|+++.+.+++
T Consensus 326 ~~~-~p~e~~~~~l~~~~~~~~~~~~~---~~e~~~~~~~l~~~~~~~i~~~~~~~~~~--------~~~~~~~~l~~~~ 393 (472)
T COG0008 326 MRV-DPVEVVIENLKPHLEEEGATLPL---NPEMGERVVPLTKETLIEIERLDFFFFED--------KEEVRLKRLANVI 393 (472)
T ss_pred HHh-CCHHHHHHhhhhhhhhhcccCCC---CHHHHhhhhhhccchHHHHhHHHHHHhcc--------hHHHHHHhhcchH
Confidence 999 99999999986423344555665 7889999999999 89999999876543 2677887777653
Q ss_pred EEeeEeecCCCCEEEEEEEEcCCCCCCCCceEEEeccCCceeEEEEcccccCCCCCCCCCCCCCCccccCCCCceeEEE-
Q psy17575 703 EVDKVNTKCNGAITSIDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSI- 781 (832)
Q Consensus 703 ~~~~~~~~~~g~v~e~~~~~~~~~~~~k~k~~I~Wv~~~~~~evr~y~~Lf~~~~p~~~~~~~~~~~~~iN~~S~~~~~- 781 (832)
....+.....+.+.. ...+..++|||++.. .+|+.+.| .+++.+...+.
T Consensus 394 ~~~~l~~~~~~l~~~----------~~~~~~i~~wv~~~~--------~~~~vk~~------------~~~~plr~a~tG 443 (472)
T COG0008 394 VAEVLEKDAEGLITS----------DWTKENIIHWVKAVA--------RLFGVKGP------------KLFPPLRVALTG 443 (472)
T ss_pred HHHHHHHHHHhhhhc----------cccHHHHHHHHHHHH--------HHhCCCCc------------ccchhhHHHhcC
Confidence 222222222222211 123344999997632 44554444 46777777888
Q ss_pred EEeecCccCCCCCC--eEEeEEeeeEEEe
Q psy17575 782 GYADSGFVGVKPYD--RFQFERVGFFTVD 808 (832)
Q Consensus 782 ~~~e~~~~~~~~~~--~~QfeR~Gyf~~D 808 (832)
++++|.+.+..+.. .+||+|+|||++|
T Consensus 444 ~~~~p~l~~~~~~~g~~~q~~Rl~~~~~~ 472 (472)
T COG0008 444 GYVEPELADTIELLGKEVQFERLGYALAD 472 (472)
T ss_pred CccCCCHHHHHHhhchHHHHHHHHHHhhC
Confidence 99999987765544 4999999999875
No 14
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=1.1e-75 Score=609.52 Aligned_cols=238 Identities=65% Similarity=1.135 Sum_probs=231.6
Q ss_pred ceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCcccccchhHHHH
Q psy17575 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQL 398 (832)
Q Consensus 319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~~~~qSd~~~~~ 398 (832)
+|||||||||||+|||||+|+||+||++||++||+|+||||||||+|+.++|++.|++||+|||++||++++||+|++.|
T Consensus 1 ~v~~RFAPsPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wD~~~~QS~r~~~Y 80 (238)
T cd00807 1 KVVTRFPPEPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDVKWLGIKPYKVTYASDYFDQL 80 (238)
T ss_pred CceEecCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCcccchHHHHHHHHHHHHcCCCCCCceecccCHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCCCCCceEEEeee
Q psy17575 399 YEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKF 478 (832)
Q Consensus 399 ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~~~D~V~~Ri~~ 478 (832)
++++.+|+++|+||+
T Consensus 81 ~~~~~~L~~~g~aY~----------------------------------------------------------------- 95 (238)
T cd00807 81 YEYAEQLIKKGKAYV----------------------------------------------------------------- 95 (238)
T ss_pred HHHHHHHHHcCCeec-----------------------------------------------------------------
Confidence 999999999999999
Q ss_pred CCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccccCCCCcccchhHHHHh
Q psy17575 479 LPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVVSKRKIAKL 558 (832)
Q Consensus 479 ~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~l~gtkLSKRk~~~l 558 (832)
|++++++|+++||||||+||||++|||||||||+||+++|++|.||+++||++.|.+|+|+||+.+|+|||||+++++
T Consensus 96 --~~~~~~~~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg~~~P~~~~~~hln~~g~kLSKR~~~~~ 173 (238)
T cd00807 96 --HHRTGDKWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALRLYRPHQWEFSRLNLTYTVMSKRKLLQL 173 (238)
T ss_pred --CCCCCCCEEEEeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHHcCCCCCceeEEEEECCCCCCccCcCchhc
Confidence 123456788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhhccCCCc
Q psy17575 559 IEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPR 623 (832)
Q Consensus 559 v~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l~~~a~R 623 (832)
|++|.|.||||||++|+.+||++|++||||+|||+.+|||.++..+++++|+++||++||+.++|
T Consensus 174 i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~~~~~~~~~~l~~~nr~~id~~~~r 238 (238)
T cd00807 174 VDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEACVRKDLNPTAPR 238 (238)
T ss_pred cccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998
No 15
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.3e-73 Score=636.57 Aligned_cols=286 Identities=21% Similarity=0.304 Sum_probs=252.3
Q ss_pred EEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCcccccchhHHHHHH
Q psy17575 321 RTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYE 400 (832)
Q Consensus 321 ~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~~~~qSd~~~~~ye 400 (832)
+||||||||||||||||||||+||+|||++||+|||||||||++|+.+++++.|+++|+||||.||++++||+|++.|++
T Consensus 1 ~~RFAPSPTG~LHiG~artAL~n~l~Ar~~gG~fiLRiEDTD~~R~~~e~~~~I~~~L~WlGl~wDe~y~QSeR~~~Y~~ 80 (433)
T PRK12410 1 MLRFAPSPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDKERNIEGKDKEILEILNLFGISWDKLVYQSENLKFHRQ 80 (433)
T ss_pred CCccCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCChHHHHHHHHHHHHcCCCCCCCeehhccHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCccccCCCHHHHhccC----------CCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccC-CCC
Q psy17575 401 WAVKLIKKGLAYVCHQKSDEMKGFN----------PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEE-GKQ 469 (832)
Q Consensus 401 ~A~~Li~~G~AY~C~Cs~eel~~~~----------~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~-~~~ 469 (832)
+|++|+++|+||+||||++|+++.+ .+++.||+.+.++.+ . ..+++++|||+|... .+.
T Consensus 81 ~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~e~~------~----~g~~~~iR~k~p~~~~~f~ 150 (433)
T PRK12410 81 MAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYDGTCENLEDDEVL------N----CNKPFVVRLKKPNHTMSFT 150 (433)
T ss_pred HHHHHHHcCCeeeecCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHhHHH------h----cCCCeEEEEEcCCCceeee
Confidence 9999999999999999999997542 135778888776541 1 234689999998532 358
Q ss_pred CceEEEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccccC
Q psy17575 470 DPVAYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLN 544 (832)
Q Consensus 470 D~V~~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~ 544 (832)
|.|.|++.+.++ +.+||+| +||||||+||||++|||||||||+||++|||+|.+|+++|||..|- .|+|+|
T Consensus 151 D~v~G~i~~~~~--~~~D~Vi~R~Dg~PtY~fA~vVDD~~mgIThViRG~d~l~~tp~Qi~Ly~aLg~~~pp--~f~Hlp 226 (433)
T PRK12410 151 DAIKGEVSFEPD--EIDSFVILRADKTPTYNFACAVDDMLYDISLIIRGEDHVSNTPKQILIREALGYNKEI--TYAHLP 226 (433)
T ss_pred eccceeEEeccc--cCCCeEEEcCCCCccccccchhchhhcCCCEEEechhhhhCcHHHHHHHHHcCCCCCC--eEEEee
Confidence 999999998763 5678987 7999999999999999999999999999999999999999998641 599987
Q ss_pred C----CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCH-HHHHHHHHHhhcc
Q psy17575 545 V----NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSP-NMLEAVVREVLND 619 (832)
Q Consensus 545 l----~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~-~~le~~~r~~l~~ 619 (832)
+ +|+|||||+++ .+|.+||++||+|+||+||++.+||+..++.++. +++++|..+.+.+
T Consensus 227 li~~~~g~KLSKR~~~----------------~~v~~~r~~G~~PeAi~n~l~~lG~~~~~e~~~~~eli~~F~~~~i~~ 290 (433)
T PRK12410 227 IILNEEGKKMSKRDNA----------------SSVKWLLEQGFLPSAIANYLILLGNKTPKEIFTLEEAIEWFDIEKISK 290 (433)
T ss_pred eeeCCCCCeeecccCh----------------hhHHHHHHCCCCHHHHHHHHHHhCCCCcccccCHHHHHHhCCHhhCCC
Confidence 5 68999999863 4799999999999999999999999987777876 5567787777776
Q ss_pred CCCceeEEecCcceEEeecCC
Q psy17575 620 TAPRVMVVIDPLPLHIVNFDQ 640 (832)
Q Consensus 620 ~a~R~~av~dp~kl~i~N~~~ 640 (832)
.. +++|+.||.|.|...
T Consensus 291 ~~----~~~d~~kL~~~N~~~ 307 (433)
T PRK12410 291 SP----AKFDLKKLRFINREH 307 (433)
T ss_pred cc----ccCCHHHHHHHHHHH
Confidence 55 789999999999654
No 16
>PLN02627 glutamyl-tRNA synthetase
Probab=100.00 E-value=7.3e-73 Score=642.38 Aligned_cols=296 Identities=22% Similarity=0.388 Sum_probs=258.6
Q ss_pred hhhhcCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCc----
Q psy17575 312 HIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ---- 387 (832)
Q Consensus 312 hl~~~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~---- 387 (832)
|.+.+.++|||||||||||+||||||||||+||+|||++||+|||||||||++|+.++|++.|+++|+||||+||+
T Consensus 38 ~~~~~~~~vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~I~~~L~WLGl~wDegp~~ 117 (535)
T PLN02627 38 AGESKGGPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLARSTKESEEAVLRDLKWLGLDWDEGPDV 117 (535)
T ss_pred cccCCCCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCcCccc
Confidence 4555678899999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -----ccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccC----------CCCCCCCCCChhHhHHHHHHHHcCccc
Q psy17575 388 -----ITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN----------PLPSPWRERPVEENVKLFEAMKNGLID 452 (832)
Q Consensus 388 -----~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~----------~~~~~~R~r~~ee~L~~f~~m~~g~~~ 452 (832)
+++||+|++.|+++|++|+++|+||+||||++++++.+ .+++.||+++.+++.+. + .
T Consensus 118 gg~~gpy~QSeR~~~Y~~~a~~Li~~G~AY~CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l~~ee~~~~---~-----~ 189 (535)
T PLN02627 118 GGEYGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAMKEEAELKKLPPRYTGKWATASDEEVQAE---L-----A 189 (535)
T ss_pred CCCCCCeeeeccHHHHHHHHHHHHHcCCeeeccCChHHHHHHHHHHHhcCCCcCCCCccccCCHHHHHHH---H-----h
Confidence 48999999999999999999999999999999997542 13567999998876432 2 2
Q ss_pred CC-CceEEEEecccCC--CCCceEEEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHH
Q psy17575 453 EG-EATLRMKITLEEG--KQDPVAYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYY 524 (832)
Q Consensus 453 ~g-~~~lR~K~~~~~~--~~D~V~~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~ 524 (832)
.| ++++|||++.... +.|.|.+.+.+... +.+||+| +||||||||||||+|||||||||+||++||++|+
T Consensus 190 ~g~~~~iR~k~p~~~~~~~~D~i~G~i~~~~~--~~~D~Vi~R~DG~PtY~fA~vVDD~~mgITHViRG~D~l~nTpkQi 267 (535)
T PLN02627 190 KGTPYTYRFRVPKEGSVKIDDLIRGEVSWNTD--TLGDFVLLRSNGQPVYNFCVAVDDATMGITHVIRAEEHLPNTLRQA 267 (535)
T ss_pred CCCCceEEEEcCCCCceEEEeeeeeeeeeccc--cCCCeEEEecCCCccccccceecccccCCcEEEechhhhcChHHHH
Confidence 23 4899999986432 47999999887653 4567876 9999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCcccccccCC----CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCC
Q psy17575 525 WLCNALDIYCPVQWEYGRLNV----NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGA 600 (832)
Q Consensus 525 ~L~~aL~~~~P~~~ef~hL~l----~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~ 600 (832)
||+++|||..| .|+|+|+ +|+|||||++. .++..||++||.|+||+||++.|||+..
T Consensus 268 ~ly~aLg~~~P---~f~Hlpli~~~~g~KLSKR~~~----------------~~v~~~r~~G~~PeAi~nyla~LGws~~ 328 (535)
T PLN02627 268 LIYKALGFPMP---RFAHVSLILAPDRSKLSKRHGA----------------TSVGQFREMGYLPDAMVNYLALLGWNDG 328 (535)
T ss_pred HHHHHcCCCCC---eEEEccceeCCCCCccccccCC----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCC
Confidence 99999999999 5999987 48999999843 3689999999999999999999999865
Q ss_pred --CcccCH-HHHHHHHHHhhccCCCceeEEecCcceEEeecCC
Q psy17575 601 --QAVVSP-NMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQ 640 (832)
Q Consensus 601 --~~~~~~-~~le~~~r~~l~~~a~R~~av~dp~kl~i~N~~~ 640 (832)
++.++. ++++.|+-+.+.++. +++|+.||.|.|..+
T Consensus 329 ~~~e~~~~~eli~~F~l~~v~~s~----~~fD~~KL~wlN~~y 367 (535)
T PLN02627 329 TENEIFTLEELVEKFSIDRINKSG----AVFDSTKLKWMNGQH 367 (535)
T ss_pred CCCCcCCHHHHHHhCCHhhCCCcc----cccCHHHHHHHHHHH
Confidence 356776 667888888877765 789999999999765
No 17
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=100.00 E-value=5.2e-74 Score=623.44 Aligned_cols=296 Identities=33% Similarity=0.445 Sum_probs=238.1
Q ss_pred ceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcC-cccccchhHHH
Q psy17575 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPY-QITHSSDYFHQ 397 (832)
Q Consensus 319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd-~~~~qSd~~~~ 397 (832)
+|||||||||||+||||||||||+||++||++||+|+|||||||++|+.++|+++|+++|+|||+.|| .+++||+|++.
T Consensus 1 kv~tRFAPsPtG~lHiG~~r~al~n~~~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~D~~~~~QS~r~~~ 80 (314)
T PF00749_consen 1 KVRTRFAPSPTGYLHIGHARTALLNYLFARKYGGKFILRIEDTDPERCRPEFYDAILEDLRWLGLEWDYGPYYQSDRLEI 80 (314)
T ss_dssp --EEEE---SSSS-BHHHHHHHHHHHHHHHHTTSEEEEEEETSSTTTCHHHHHHHHHHHHHHHT---STCEEEGGGGHHH
T ss_pred CeeEeeCCCCCCCcccchhHHHHHHHHHHhccCceEEEeccccccccchhhHHHHHHhheeEEEEecCCeEEeHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred HHHHHHHHHHcCCccccCCCHHHHhccCC----CCCCCCCCChhHhHHHH-HHHHcCcccCCCceEEEEecccCC--CCC
Q psy17575 398 LYEWAVKLIKKGLAYVCHQKSDEMKGFNP----LPSPWRERPVEENVKLF-EAMKNGLIDEGEATLRMKITLEEG--KQD 470 (832)
Q Consensus 398 ~ye~A~~Li~~G~AY~C~Cs~eel~~~~~----~~~~~R~r~~ee~L~~f-~~m~~g~~~~g~~~lR~K~~~~~~--~~D 470 (832)
|+++|++|+++|+||+|+||++||++.+. ..|+++.+..++++.++ ++|.++....+++++|||+|+.+. +.|
T Consensus 81 Y~~~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~~~~~~~~D 160 (314)
T PF00749_consen 81 YQEAAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPMESPIAFRD 160 (314)
T ss_dssp HHHHHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSSTCCEEEEE
T ss_pred HHHHHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeeccccccccccc
Confidence 99999999999999999999999987642 35678889999999999 889989888889999999999864 589
Q ss_pred ceEEEeeeCC---CCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccccC---
Q psy17575 471 PVAYRIKFLP---HHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLN--- 544 (832)
Q Consensus 471 ~V~~Ri~~~~---h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~--- 544 (832)
+|.|++.+.+ |...+..+.++||||||+||||++|||||||||.||+++|+.|.||+++||+..| .|.|+|
T Consensus 161 ~v~g~i~~~~~~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg~~~P---~~~H~pl~l 237 (314)
T PF00749_consen 161 LVRGRIIFDPSDLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALGWPPP---PYAHLPLIL 237 (314)
T ss_dssp TTTEEEEEEGGGSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCTSSS----EEEEEEEEE
T ss_pred CcceeeeeccccCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHHHhCCCCc---ceEeeeeee
Confidence 9999999876 3333333334999999999999999999999999999999999999999999988 477765
Q ss_pred -CCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCC--CcccCH-HHHHHHHHHhhccC
Q psy17575 545 -VNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGA--QAVVSP-NMLEAVVREVLNDT 620 (832)
Q Consensus 545 -l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~--~~~~~~-~~le~~~r~~l~~~ 620 (832)
.+|+|||||+++.+| .+..+|..|++|+++.|||+.+||+.. .+.++. +..++|.-..+.+
T Consensus 238 ~~~g~kLSKR~~~~~i--------------~~~~~r~~g~~~~~~l~~L~~lG~~~~~~~e~~~~~~~~~~f~~~~~~~- 302 (314)
T PF00749_consen 238 NEDGKKLSKRKGAKSI--------------ELGDYREWGDPPEATLNYLARLGWSPEAIREFFSLDELIKQFDLSKISK- 302 (314)
T ss_dssp ETTSSBSSTTCSHHBH--------------HHHHHHHTT-THHHHHHHHHHTTB-HCTHHCHHHHHHHHHHC-GGGBHS-
T ss_pred cCCCcEechhhccccc--------------cccccccCCCCHHHHHHHHHHhcCCcchhhhhcCHHHHHHHhhHhhccC-
Confidence 479999999987654 377788888888888888888888843 234443 3334443333333
Q ss_pred CCceeEEecCcceEE
Q psy17575 621 APRVMVVIDPLPLHI 635 (832)
Q Consensus 621 a~R~~av~dp~kl~i 635 (832)
..+++|+.||.|
T Consensus 303 ---~~~~fd~~kL~w 314 (314)
T PF00749_consen 303 ---SPAVFDRKKLDW 314 (314)
T ss_dssp ---SHEEHHHHHHHH
T ss_pred ---chHHhCHHHhCC
Confidence 336777776643
No 18
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=2.3e-71 Score=578.83 Aligned_cols=238 Identities=38% Similarity=0.595 Sum_probs=228.7
Q ss_pred ceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCccc--ccHHHHHHHHHHHHHcCCCcCcccccchhHH
Q psy17575 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEK--EEEKFFTGIKDMVQWLGYKPYQITHSSDYFH 396 (832)
Q Consensus 319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r--~~~e~~~~I~edL~WLGl~pd~~~~qSd~~~ 396 (832)
+|+|||||||||+|||||+|+|++||++||++||+|+|||||||++| +.+++++.|++||+|||+.||++++||+|++
T Consensus 1 ~v~~RfaPsPtG~lHiG~~rtal~~~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~~~i~~dL~wLGl~~d~~~~qS~r~~ 80 (240)
T cd09287 1 KVVMRFAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTKRPDPEAYDMIPEDLEWLGVKWDEVVIASDRIE 80 (240)
T ss_pred CceEeCCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeeCcCCCCcccchHHHHHHHHHHHHHcCCCCCCccchhccHH
Confidence 48999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCCCCCceEEEe
Q psy17575 397 QLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRI 476 (832)
Q Consensus 397 ~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~~~D~V~~Ri 476 (832)
.|++++++|+++|+||+
T Consensus 81 ~y~~~~~~Li~~G~aY~--------------------------------------------------------------- 97 (240)
T cd09287 81 LYYEYARKLIEMGGAYV--------------------------------------------------------------- 97 (240)
T ss_pred HHHHHHHHHHHcCCccc---------------------------------------------------------------
Confidence 99999999999999998
Q ss_pred eeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccccCCCCcccchhHHH
Q psy17575 477 KFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVVSKRKIA 556 (832)
Q Consensus 477 ~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~l~gtkLSKRk~~ 556 (832)
|++.+++|+++|||||||||||++|||||||||+||+++|++|.||+++||+..|.+++++.++..|+|||||+++
T Consensus 98 ----~~~~~~~~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~~l~~~Lg~~~P~~~H~pll~~~~~kLSKR~~~ 173 (240)
T cd09287 98 ----HPRTGSKYRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYEYFGWEYPETIHWGRLKIEGGKLSTSKIR 173 (240)
T ss_pred ----CcccCCcEEEEEccccceeeeccccCCCeEEechhhhhCCHHHHHHHHHcCCCCCcEEeeeeecCCCCeecccccc
Confidence 1234568999999999999999999999999999999999999999999999999877777776789999999999
Q ss_pred HhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhhccCCCc
Q psy17575 557 KLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPR 623 (832)
Q Consensus 557 ~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l~~~a~R 623 (832)
++|++|.|.||||||++|+++||++|++|+||+||+..+|||.+++.+++++|+++||++||+.|+|
T Consensus 174 ~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~~r~~l~~~~~r 240 (240)
T cd09287 174 KGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYAINRKLIDPRANR 240 (240)
T ss_pred ccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998
No 19
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.7e-71 Score=617.87 Aligned_cols=289 Identities=25% Similarity=0.333 Sum_probs=252.4
Q ss_pred ceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCcccccchhHHHH
Q psy17575 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQL 398 (832)
Q Consensus 319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~~~~qSd~~~~~ 398 (832)
+||||||||||||||||||||||+||+|||++||+|||||||||++|+.+++.+.|+++|+|||+.||+.++||++++.|
T Consensus 2 ~vr~RFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~Rs~~~~~~~I~e~L~wLGI~~De~y~QSer~~~y 81 (445)
T PRK12558 2 TVITRFAPSPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTDLERSKQEYADAIAEDLKWLGINWDRTFRQSDRFDRY 81 (445)
T ss_pred ceeEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeccCCcccchHHHHHHHHHHHHHcCCCCCccccHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCccccCCCHHHHhccC----------CCCCCCCCCChhHhHHHHHHHHcCcccCC-CceEEEEecccC-
Q psy17575 399 YEWAVKLIKKGLAYVCHQKSDEMKGFN----------PLPSPWRERPVEENVKLFEAMKNGLIDEG-EATLRMKITLEE- 466 (832)
Q Consensus 399 ye~A~~Li~~G~AY~C~Cs~eel~~~~----------~~~~~~R~r~~ee~L~~f~~m~~g~~~~g-~~~lR~K~~~~~- 466 (832)
++++++|+++|+||+||||+||+++.+ .+++.||+.+.++.. .+..+| ++++|||++...
T Consensus 82 ~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~--------~~~~~g~~~~iR~k~~~~~~ 153 (445)
T PRK12558 82 DEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKA--------ALEAEGRKPHWRFKLDDEPI 153 (445)
T ss_pred HHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHH--------hHHhcCCCceEEEecCCCce
Confidence 999999999999999999999997532 134567877766542 223334 489999995432
Q ss_pred CCCCceEEEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCccccc
Q psy17575 467 GKQDPVAYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYG 541 (832)
Q Consensus 467 ~~~D~V~~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~ 541 (832)
.+.|.|.|.+.+.+. +.+||+| +|||||||||||++|||||||||+||++|||+|+||+++|||..| +|+
T Consensus 154 ~~~D~i~G~~~~~~~--~~~D~Vi~R~dg~PtY~fA~vVDD~~m~ITHViRG~d~l~~t~~q~~l~~alg~~~P---~f~ 228 (445)
T PRK12558 154 SWDDLIRGEQSIDAA--SLSDPVLIRADGSYLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFEALGAKPP---VFA 228 (445)
T ss_pred EEEEEeeeEeecccc--cCCCeEEEecCCCccccccceeccccCCCCEEEechhhhhCCHHHHHHHHHhCCCCC---eEE
Confidence 247889998877653 3467876 999999999999999999999999999999999999999999999 699
Q ss_pred ccCC----CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCc-ccCH-HHHHHHHHH
Q psy17575 542 RLNV----NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQA-VVSP-NMLEAVVRE 615 (832)
Q Consensus 542 hL~l----~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~-~~~~-~~le~~~r~ 615 (832)
|+|+ +|+|||||++. .+|.+||++||+||||+||++.|||+..+. .+++ ++++.|.-+
T Consensus 229 H~pli~~~~g~KLSKR~g~----------------~sv~~~r~~G~~Peai~n~la~lG~s~~~~e~~~~~eli~~F~l~ 292 (445)
T PRK12558 229 HLSLLTGADGKGLSKRLGG----------------LSIRSLREDGIEPMAIASLLARLGTSDPVEPYTSMEELAESFDLS 292 (445)
T ss_pred EcccccCCCcccccccCCC----------------cCHHHHHHCCCCHHHHHHHHHHHcCCCCCcccCCHHHHHHhCCHh
Confidence 9987 57899999842 489999999999999999999999997654 4576 667889888
Q ss_pred hhccCCCceeEEecCcceEEeecCC
Q psy17575 616 VLNDTAPRVMVVIDPLPLHIVNFDQ 640 (832)
Q Consensus 616 ~l~~~a~R~~av~dp~kl~i~N~~~ 640 (832)
.+++++ +++|+.||.|.|..+
T Consensus 293 ~~~~~~----~~fd~~KL~w~N~~~ 313 (445)
T PRK12558 293 SFSRAP----AKFDPEDLERLNARL 313 (445)
T ss_pred hCCCcc----ccCCHHHHHHHHHHH
Confidence 888766 789999999999765
No 20
>KOG1149|consensus
Probab=100.00 E-value=8.4e-70 Score=588.55 Aligned_cols=291 Identities=22% Similarity=0.343 Sum_probs=255.6
Q ss_pred CceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCc---------c
Q psy17575 318 GKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ---------I 388 (832)
Q Consensus 318 ~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~---------~ 388 (832)
..|||||||||||+||+|++||||+||+|||++||+|||||||||++|..+++.+.|.++|+|+||.||+ +
T Consensus 32 ~~VRvRFAPSPTGfLHlGgLRTALfNYLfArk~gGkFiLRiEDTDq~R~v~gs~e~i~~~L~w~nl~~DEgP~~gG~~GP 111 (524)
T KOG1149|consen 32 ACVRVRFAPSPTGFLHLGGLRTALFNYLFARKKGGKFILRIEDTDQKRLIRGSEEAIYEDLKWANLDWDEGPGVGGPFGP 111 (524)
T ss_pred ceeEEeecCCCCcceehhhHHHHHHHHHHHHhcCCeEEEEeccccccccccchHHHHHHHHHhcCCCcccCCCcCCCCCc
Confidence 4599999999999999999999999999999999999999999999999999999999999999999994 4
Q ss_pred cccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccC-------C---CCCCCCCCChhHhHHHHHHHHcCcccCC-Cce
Q psy17575 389 THSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN-------P---LPSPWRERPVEENVKLFEAMKNGLIDEG-EAT 457 (832)
Q Consensus 389 ~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~-------~---~~~~~R~r~~ee~L~~f~~m~~g~~~~g-~~~ 457 (832)
|.||+|.++|.++|+.|++.|+||+||||++++..++ . +...||+.+.+|. ..+.+.| +++
T Consensus 112 Y~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~lrk~A~k~~~~p~YD~kca~ls~~ei--------~~~lakg~pf~ 183 (524)
T KOG1149|consen 112 YEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLLRKSALKKHEIPRYDRKCANLSDAEI--------KQKLAKGTPFT 183 (524)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHHHHhhhccCCCCcccchhcccCHHHH--------HHHHhcCCCee
Confidence 8999999999999999999999999999999886542 1 2346888776653 2234456 489
Q ss_pred EEEEecccC-CCCCceEEEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcC
Q psy17575 458 LRMKITLEE-GKQDPVAYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALD 531 (832)
Q Consensus 458 lR~K~~~~~-~~~D~V~~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~ 531 (832)
+|||++... .+.|+|.|.+......+.| |++| +||||||+|||||+|||||||||.||++||.+|..||+|+|
T Consensus 184 iRFrl~~~~~~f~DLvyG~v~~~~d~~~g-D~VvmKSDgfPTYHfAnVVDDh~M~IsHViRGeEWlpST~KH~lLYkAfg 262 (524)
T KOG1149|consen 184 IRFRLPKESPPFTDLVYGKVNHNVDSNEG-DPVVMKSDGFPTYHFANVVDDHLMGISHVIRGEEWLPSTLKHILLYKAFG 262 (524)
T ss_pred EEEecCCCCCChhhhhhhhhhccccccCC-CcEEEecCCCcceeeeeeecchhcchhheeecchhccccHHHHHHHHHhC
Confidence 999999854 5789999998777665544 5665 99999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccCC----CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC--cccC
Q psy17575 532 IYCPVQWEYGRLNV----NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ--AVVS 605 (832)
Q Consensus 532 ~~~P~~~ef~hL~l----~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~--~~~~ 605 (832)
|.+| .|+|||+ +|+|||||++.. .+..||++||.||||.|||+.+||+..+ ..++
T Consensus 263 W~pP---kFaHlpLl~n~d~sKLSKRqgD~----------------~vs~~~e~G~LPeallN~ial~Gwg~~~~~~f~s 323 (524)
T KOG1149|consen 263 WQPP---KFAHLPLLLNPDGSKLSKRQGDA----------------SVSHYREQGYLPEALLNYIALLGWGFRTENEFFS 323 (524)
T ss_pred CCCC---ceeeeeeeecCCcchhhhhcCcc----------------hHHHHHHcCCChHHHHHHHHHcCCCccccccccc
Confidence 9999 6999987 699999999642 6889999999999999999999999653 4567
Q ss_pred H-HHHHHHHHHhhccCCCceeEEecCcceEEeecCC
Q psy17575 606 P-NMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQ 640 (832)
Q Consensus 606 ~-~~le~~~r~~l~~~a~R~~av~dp~kl~i~N~~~ 640 (832)
+ ++++.|+.+.+++.. +++|+.||.+.|..+
T Consensus 324 l~eLieqF~i~~ltk~~----a~ld~ekL~~~Nr~~ 355 (524)
T KOG1149|consen 324 LEELIEQFSIERLTKSN----AILDSEKLRFLNRLH 355 (524)
T ss_pred HHHHHHHhchhhhcccc----cccCHHHHHHHHHHH
Confidence 6 667889999988877 889999999999655
No 21
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=100.00 E-value=8.4e-68 Score=568.43 Aligned_cols=267 Identities=21% Similarity=0.232 Sum_probs=225.3
Q ss_pred CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcC-cccccchhH
Q psy17575 317 GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPY-QITHSSDYF 395 (832)
Q Consensus 317 ~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd-~~~~qSd~~ 395 (832)
..+|||||||||||+|||||+|+||+||++||++||+|||||||||++|+.++|++.|+++|+||||.|| .+++||+|+
T Consensus 3 ~~~v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDtD~~R~~~~~~~~I~~dL~wlGl~wDe~~~~QS~r~ 82 (299)
T PRK05710 3 MTPYIGRFAPSPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAILADLEWLGLHWDGPVLYQSQRH 82 (299)
T ss_pred CCceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCCccchHHHHHHHHHHHHCCCCCCCCceEeeccH
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999 489999999
Q ss_pred HHHHHHHHHHHHcCCccccCCCHHHHhccC--------CCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccC-
Q psy17575 396 HQLYEWAVKLIKKGLAYVCHQKSDEMKGFN--------PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEE- 466 (832)
Q Consensus 396 ~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~--------~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~- 466 (832)
+.|++++++|+++|+||+|+||++||++.+ .++++||+++.+++ .+++||||+|...
T Consensus 83 ~~Y~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~--------------~~~~iRlk~~~~~~ 148 (299)
T PRK05710 83 DAYRAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPR--------------NPPAWRLRVPDAVI 148 (299)
T ss_pred HHHHHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCcccc--------------CCceEEEEcCCCce
Confidence 999999999999999999999999997543 24678898776542 1689999998221
Q ss_pred CCCCceEEEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCccccc
Q psy17575 467 GKQDPVAYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYG 541 (832)
Q Consensus 467 ~~~D~V~~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~ 541 (832)
.+.|.+.+.+.+.+.. ..+||+| +|||||||||||++|||||||||+||+++|++|.||+++||+..| +|+
T Consensus 149 ~~~D~~~G~~~~~~~~-~~~D~Vi~R~dg~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg~~~P---~y~ 224 (299)
T PRK05710 149 AFDDRLQGRQHQDLAL-AVGDFVLRRADGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLGLPTP---RYL 224 (299)
T ss_pred EEEEecceeEeeCCCC-CCCCEEEEecCCCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHcCCCCC---eEE
Confidence 2467777777655542 3456775 899999999999999999999999999999999999999999999 588
Q ss_pred ccCC----CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC--cccC---HHHHHHH
Q psy17575 542 RLNV----NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ--AVVS---PNMLEAV 612 (832)
Q Consensus 542 hL~l----~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~--~~~~---~~~le~~ 612 (832)
|+|+ +|+|||||+++.. |.. .|+.|+ |.||++.|||+... ..++ .+.+++|
T Consensus 225 H~pll~~~~g~kLSKr~~~~~----------------i~~---~g~~p~-l~~~l~~lG~~~~~~~~~~~~~~~~~i~~f 284 (299)
T PRK05710 225 HLPLVLNADGQKLSKQNGAPA----------------LDA---AGPLPV-LAAALRFLGQPPPAADASVEELLAQAVAHW 284 (299)
T ss_pred EeecccCCCCCcccccCCccc----------------hhh---cCcCHH-HHHHHHHcCCCCCccccccccCHHHHHHhC
Confidence 8764 6899999997543 333 799999 99999999998753 2222 2556666
Q ss_pred HHHhhccCC
Q psy17575 613 VREVLNDTA 621 (832)
Q Consensus 613 ~r~~l~~~a 621 (832)
....+....
T Consensus 285 ~~~~~~~~~ 293 (299)
T PRK05710 285 DLTRLPRQA 293 (299)
T ss_pred CHhhCCcCC
Confidence 555554443
No 22
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=100.00 E-value=6.1e-68 Score=563.60 Aligned_cols=251 Identities=21% Similarity=0.232 Sum_probs=215.9
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCc-ccccchhHHHH
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ-ITHSSDYFHQL 398 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~-~~~qSd~~~~~ 398 (832)
++|||||||||+|||||||+||+||++||++||+|||||||||++|+.++|+++|+++|+||||+||+ +++||+|++.|
T Consensus 1 ~~~RFAPSPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD~~R~~~~~~~~I~~dL~wLGl~wDe~~~~QS~r~~~Y 80 (272)
T TIGR03838 1 YRGRFAPSPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPPREVPGAADDILRTLEAYGLHWDGEVVYQSQRHALY 80 (272)
T ss_pred CeeeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCCeeeeeCCHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999996 57999999999
Q ss_pred HHHHHHHHHcCCccccCCCHHHHhccC---C--CCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccC-CCCCce
Q psy17575 399 YEWAVKLIKKGLAYVCHQKSDEMKGFN---P--LPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEE-GKQDPV 472 (832)
Q Consensus 399 ye~A~~Li~~G~AY~C~Cs~eel~~~~---~--~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~-~~~D~V 472 (832)
+++|++|+++|+||+||||++||++.+ . .++.||+ +. ....+++++||||++... .+.|.+
T Consensus 81 ~~~~~~L~~~G~aY~C~Ct~eel~~~~~~~~~~y~~~cr~-~~------------~~~~~~~~~~Rlk~~~~~~~~~D~~ 147 (272)
T TIGR03838 81 QAALDRLLAAGLAYPCQCTRKEIAAAAGDGGGIYPGTCRN-GL------------LGRPARPAAWRLRVPDGVIAFDDRL 147 (272)
T ss_pred HHHHHHHHHcCCEEecCCCHHHHHHHhcCCCCCCCchhhc-cc------------ccccCCCceEEEecCCCCceEEEee
Confidence 999999999999999999999998662 1 2345776 21 012345689999998643 357999
Q ss_pred EEEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccccC---
Q psy17575 473 AYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLN--- 544 (832)
Q Consensus 473 ~~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~--- 544 (832)
.+++.+. |+...++|+| +|||||||||||++|||||||||+||+++|++|.||+++||+..| .|+|+|
T Consensus 148 ~g~~~~~-~~~~~~D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg~~~P---~y~H~pll~ 223 (272)
T TIGR03838 148 QGPQQQD-LAAAVGDFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLGLPPP---RYLHLPLVV 223 (272)
T ss_pred eeEEEec-CcccCCCEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhCCCCC---eEEechhhh
Confidence 9999865 3456678999 999999999999999999999999999999999999999999999 588865
Q ss_pred -CCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCC--CcccCHH
Q psy17575 545 -VNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGA--QAVVSPN 607 (832)
Q Consensus 545 -l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~--~~~~~~~ 607 (832)
.+|+|||||+++.+|+++ -+++++.+|++.+||+.. .+.++++
T Consensus 224 ~~~g~kLSKR~~~~~i~~~--------------------~~~~~~~~~l~~lG~~~~~~~~~~~~~ 269 (272)
T TIGR03838 224 NADGEKLSKQNGAPALDLS--------------------HPLPALLAALRFLGLPPPPELAAASPA 269 (272)
T ss_pred CCCCCeeeccCCccchhcC--------------------CcHHHHHHHHHHcCCCCCcccccCCHH
Confidence 479999999987665432 246789999999999865 2455554
No 23
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8.8e-68 Score=600.02 Aligned_cols=288 Identities=23% Similarity=0.360 Sum_probs=250.6
Q ss_pred CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcC-cccccchhH
Q psy17575 317 GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPY-QITHSSDYF 395 (832)
Q Consensus 317 ~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd-~~~~qSd~~ 395 (832)
+.+|||||||||||+||||||||||+||+|||++||+|+|||||||++|+.++++++|+++|+||||.|| .+++||+|+
T Consensus 2 ~~~vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~i~~~L~WLGl~wDe~py~QSeR~ 81 (513)
T PRK14895 2 NNNVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDKERSTKEAVEAIFSGLKWLGLDWNGEVIFQSKRN 81 (513)
T ss_pred CCCeeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCccccChHHHHHHHHHHHHcCCCCCCCceeEeCcH
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999 689999999
Q ss_pred HHHHHHHHHHHHcCCccccCCCHHHHhccC----------CCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEeccc
Q psy17575 396 HQLYEWAVKLIKKGLAYVCHQKSDEMKGFN----------PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLE 465 (832)
Q Consensus 396 ~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~----------~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~ 465 (832)
+.|+++|++|+++|+||+||||++++++.+ .+++.||+.+.++. ...+++++|||+|..
T Consensus 82 ~~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~-----------~~~~~~~iR~k~p~~ 150 (513)
T PRK14895 82 NLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIY-----------PTDIKPVIRLKTPRE 150 (513)
T ss_pred HHHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhh-----------hcCCCeeEEEEcCCC
Confidence 999999999999999999999999997542 13456777664421 123568999999865
Q ss_pred C--CCCCceEEEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcc
Q psy17575 466 E--GKQDPVAYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQW 538 (832)
Q Consensus 466 ~--~~~D~V~~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ 538 (832)
. .+.|.|.|.+.+... +.++++| .|||+||++|||++|||||||||.||.+++++|.+++++||+..|
T Consensus 151 ~~~~~~D~v~G~~~~~~~--~~~D~Vi~RsDG~ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~aLG~~~p--- 225 (513)
T PRK14895 151 GSITIHDTLQGEVVIENS--HIDDMVLLRADGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFGYAVP--- 225 (513)
T ss_pred CceEEEeecccceecccc--cCCCcEEEEeCCCcchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHHHcCCCCC---
Confidence 3 247888888877653 2356776 799999999999999999999999999999999999999999988
Q ss_pred cccccCC----CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC-cccCH-HHHHHH
Q psy17575 539 EYGRLNV----NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ-AVVSP-NMLEAV 612 (832)
Q Consensus 539 ef~hL~l----~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~-~~~~~-~~le~~ 612 (832)
.|.|+|+ +|.|||||+++ .+|..||++||.|+||+||++.|||+..+ +.+++ ++++.|
T Consensus 226 ~~~H~plv~~~~g~KLSKR~g~----------------~~i~~~r~~G~~Peai~n~la~LG~s~~~~e~~~~~el~~~F 289 (513)
T PRK14895 226 SMTHIPLIHGADGAKLSKRHGA----------------LGIEAYKDMGYLPESLCNYLLRLGWSHGDDEIISMTQAIDWF 289 (513)
T ss_pred eEEEEEeEEcCCCCccccccCc----------------hhHHHHHHCCCCHHHHHHHHHHhCCCCCCcCCCCHHHHHhhC
Confidence 5778654 68999999964 26899999999999999999999999764 56776 567888
Q ss_pred HHHhhccCCCceeEEecCcceEEeecCC
Q psy17575 613 VREVLNDTAPRVMVVIDPLPLHIVNFDQ 640 (832)
Q Consensus 613 ~r~~l~~~a~R~~av~dp~kl~i~N~~~ 640 (832)
.-+.++++. ++||+.||.|.|..+
T Consensus 290 ~~~~v~~s~----~~FD~~KL~wlN~~y 313 (513)
T PRK14895 290 NLDSLGKSP----SKLDFAKMNSLNAHY 313 (513)
T ss_pred CHHhCcCCc----CcCCHHHHHHHHHHH
Confidence 888887765 789999999999765
No 24
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-67 Score=600.38 Aligned_cols=292 Identities=27% Similarity=0.382 Sum_probs=249.5
Q ss_pred CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCcc--------
Q psy17575 317 GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQI-------- 388 (832)
Q Consensus 317 ~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~~-------- 388 (832)
.++|||||||||||||||||+||||+||+|||++||+|||||||||++|+.++|+++|+++|+||||.||+.
T Consensus 2 ~~~v~~RfAPSPtG~lHiG~~rtal~n~l~Ar~~~G~fiLRieDtD~~R~~~~~~~~i~~~L~wlGl~~De~p~~~~~gp 81 (476)
T PRK01406 2 MMKVRTRFAPSPTGYLHIGGARTALFNWLFARHHGGKFILRIEDTDQERSTEEAEEAILEGLKWLGLDWDEGPDGGPYGP 81 (476)
T ss_pred CCceeEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCCCChHHHHHHHHHHHHCCCCCCCCCccCCCCc
Confidence 457999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred cccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccC----------CCCCCCCCCChhHhHHHHHHHHcCcccCCCceE
Q psy17575 389 THSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN----------PLPSPWRERPVEENVKLFEAMKNGLIDEGEATL 458 (832)
Q Consensus 389 ~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~----------~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~l 458 (832)
++||+|++.|+++|++|+++|+||+||||+|||++.+ .+++.||+++.++..+ .+.+| .++++
T Consensus 82 y~QS~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~---~~~~g----~~~~i 154 (476)
T PRK01406 82 YRQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAA---RLAAG----EPPVI 154 (476)
T ss_pred eehhcCHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHH---HHhCC----CCeeE
Confidence 9999999999999999999999999999999997542 1457899998876532 23333 25899
Q ss_pred EEEecccC--CCCCceEEEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcC
Q psy17575 459 RMKITLEE--GKQDPVAYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALD 531 (832)
Q Consensus 459 R~K~~~~~--~~~D~V~~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~ 531 (832)
|||+|... .+.|.|.|++.+... ..++++| +|||+||+|||||+|+|||||||.||++++++|.+++++||
T Consensus 155 R~k~p~~~~~~~~D~i~G~~~~~~~--~~~D~Vl~RsDG~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~alG 232 (476)
T PRK01406 155 RFKVPDEGEVVFDDLVRGEIEFPNS--ELDDFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALG 232 (476)
T ss_pred EEEcCCCCceEEEEeccceEEeccc--cCCCcEEEecCCCccccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHhC
Confidence 99998653 247999999887654 2356766 99999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccC----CCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC-cccCH
Q psy17575 532 IYCPVQWEYGRLN----VNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ-AVVSP 606 (832)
Q Consensus 532 ~~~P~~~ef~hL~----l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~-~~~~~ 606 (832)
+..| .|+|+| .+|.|||||++. .+|.+||++||.|+||.||++.+||+... ..++.
T Consensus 233 ~~~p---~~~H~pli~~~~g~klSKR~g~----------------~~l~~l~~~G~~p~Ai~n~l~~lG~s~~~~e~~~~ 293 (476)
T PRK01406 233 WEVP---VFAHLPLILGPDGKKLSKRHGA----------------TSVEQYRDMGYLPEALLNYLALLGWSHGDQEIFSL 293 (476)
T ss_pred CCCC---eEEEeeeeeCCCCCcccCcCCc----------------cCHHHHHHCCCCHHHHHHHHHHhCCCCCccccCCH
Confidence 9988 588865 468999999852 38999999999999999999999999654 34443
Q ss_pred -HHHHHHHHHhhccCCCceeEEecCcceEEeecCC
Q psy17575 607 -NMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQ 640 (832)
Q Consensus 607 -~~le~~~r~~l~~~a~R~~av~dp~kl~i~N~~~ 640 (832)
++++.|+.+.+. +..+++|+.||.|.|...
T Consensus 294 ~~~i~~f~l~~~~----~s~~~fd~~kL~~~N~~~ 324 (476)
T PRK01406 294 EELIELFDLERVS----KSPARFDIKKLDWLNGHY 324 (476)
T ss_pred HHHHHhcChhhCC----CCCccccHHHHHHHHHHH
Confidence 445555555544 445889999999999765
No 25
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=100.00 E-value=3e-66 Score=588.94 Aligned_cols=290 Identities=26% Similarity=0.362 Sum_probs=248.8
Q ss_pred ceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcC-cccccchhHHH
Q psy17575 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPY-QITHSSDYFHQ 397 (832)
Q Consensus 319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd-~~~~qSd~~~~ 397 (832)
+||||||||||||||||||||||+||+|||++||+|+|||||||++|+.++|+++|+++|+||||+|| .+++||+|++.
T Consensus 1 ~v~~RfAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~de~~~~QS~r~~~ 80 (470)
T TIGR00464 1 KVRTRFAPSPTGYLHIGGARTALFNYLFAKHTGGEFILRIEDTDLERNIEEAEEAILEGLKWLGISWDEGPYYQSQRLDI 80 (470)
T ss_pred CceEeeCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCccCChHHHHHHHHHHHHCCCCCCCCeeehhCCHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999 78999999999
Q ss_pred HHHHHHHHHHcCCccccCCCHHHHhccC----------CCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccC-
Q psy17575 398 LYEWAVKLIKKGLAYVCHQKSDEMKGFN----------PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEE- 466 (832)
Q Consensus 398 ~ye~A~~Li~~G~AY~C~Cs~eel~~~~----------~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~- 466 (832)
|+++|.+|+++|+||+||||++++++.+ .+++.||+++.+++...+ ...+++++|||+|...
T Consensus 81 y~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~-------~~g~~~~iR~k~~~~~~ 153 (470)
T TIGR00464 81 YKKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKL-------AKGIPPVVRFKIPQEAV 153 (470)
T ss_pred HHHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHH-------hcCCCceEEEEcCCCCc
Confidence 9999999999999999999999997542 246789999887754322 1235689999999754
Q ss_pred -CCCCceEEEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccc
Q psy17575 467 -GKQDPVAYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEY 540 (832)
Q Consensus 467 -~~~D~V~~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef 540 (832)
.+.|.|.|++.+.++ ..++++| +|||+||++|||++|||||||||.||.+++++|.+++++||+..| .|
T Consensus 154 ~~~~D~~~G~~~~~~~--~~~D~Vl~RsdG~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~~aLg~~~p---~~ 228 (470)
T TIGR00464 154 VSFNDQVRGEITFQNS--ELDDFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALGWKIP---VF 228 (470)
T ss_pred eeEEecccceEEecCc--cCCCeEEEecCCCcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHHHHcCCCCC---eE
Confidence 357999999988764 3457776 899999999999999999999999999999999999999999888 58
Q ss_pred cccCC----CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC--cccCH-HHHHHHH
Q psy17575 541 GRLNV----NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ--AVVSP-NMLEAVV 613 (832)
Q Consensus 541 ~hL~l----~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~--~~~~~-~~le~~~ 613 (832)
.|+|+ +|+|||||++ ..+|..||++||.|+||.||++.+||+... ..++. ++++.|.
T Consensus 229 ~H~p~l~~~~g~kLSKR~g----------------~~~l~~l~~~g~~p~a~~~~~~~lG~~~~~~~e~~~~~~~i~~f~ 292 (470)
T TIGR00464 229 AHLPMILDEDGKKLSKRDG----------------ATSIMQFKEQGYLPEALINYLALLGWSPPDDQEFFSLEELIEIFS 292 (470)
T ss_pred EEEeeeecCCCccccccCC----------------CccHHHHHHCCCCHHHHHHHHHHcCCCCCCccccCCHHHHHHhcC
Confidence 88755 6899999984 248999999999999999999999998753 34444 3444444
Q ss_pred HHhhccCCCceeEEecCcceEEeecCC
Q psy17575 614 REVLNDTAPRVMVVIDPLPLHIVNFDQ 640 (832)
Q Consensus 614 r~~l~~~a~R~~av~dp~kl~i~N~~~ 640 (832)
-+.+ ++.-+++|..||.|.|..+
T Consensus 293 l~~~----~~~~~~fd~~kL~~~N~~~ 315 (470)
T TIGR00464 293 LNRV----SKSPAKFDWKKLQWLNAHY 315 (470)
T ss_pred cccC----CCCCCeecHHHHHHHHHHH
Confidence 3333 3444789999999999765
No 26
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=100.00 E-value=9e-61 Score=497.20 Aligned_cols=220 Identities=35% Similarity=0.544 Sum_probs=192.0
Q ss_pred ceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCc-ccccchhHHH
Q psy17575 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ-ITHSSDYFHQ 397 (832)
Q Consensus 319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~-~~~qSd~~~~ 397 (832)
+|+|||||||||+|||||+|+||+||++||++||+|+|||||||++|+.++|+++|++||+|||+.||+ +++||+|++.
T Consensus 1 ~v~~RFAPsPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wd~~~~~QS~r~~~ 80 (230)
T cd00418 1 TVVTRFAPSPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDPERSRPEYVESILEDLKWLGLDWDEGPYRQSDRFDL 80 (230)
T ss_pred CceEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCCeeehhcCHHH
Confidence 489999999999999999999999999999999999999999999999999999999999999999997 9999999999
Q ss_pred HHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCCCCCceEEEee
Q psy17575 398 LYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIK 477 (832)
Q Consensus 398 ~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~~~D~V~~Ri~ 477 (832)
|+++|++|+++|
T Consensus 81 y~~~~~~L~~~g-------------------------------------------------------------------- 92 (230)
T cd00418 81 YRAYAEELIKKG-------------------------------------------------------------------- 92 (230)
T ss_pred HHHHHHHHHHcC--------------------------------------------------------------------
Confidence 999999999999
Q ss_pred eCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccccC-CCCcccchhHHH
Q psy17575 478 FLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLN-VNYTVVSKRKIA 556 (832)
Q Consensus 478 ~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~-l~gtkLSKRk~~ 556 (832)
++|||||||||||++|||||||||.||+++|++|.||+++||++.|.++++..+. .+|+|||||+++
T Consensus 93 ------------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg~~~P~~~H~pll~~~~g~KLSKr~~~ 160 (230)
T cd00418 93 ------------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRLLLEDGTKLSKRKLN 160 (230)
T ss_pred ------------CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcCCCCCeEEEeeeeeCCCCCCccCcCCC
Confidence 2899999999999999999999999999999999999999999999644444442 257999999853
Q ss_pred HhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC--cccCH-HHHHHHHHHhhccCCCceeEEecCcce
Q psy17575 557 KLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ--AVVSP-NMLEAVVREVLNDTAPRVMVVIDPLPL 633 (832)
Q Consensus 557 ~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~--~~~~~-~~le~~~r~~l~~~a~R~~av~dp~kl 633 (832)
+||+++|++|++|+||++|++.+||+... +.+++ +++++|....+.... +++|+.||
T Consensus 161 ----------------~~i~~~r~~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~li~~f~~~~~~~~~----~~~d~~kL 220 (230)
T cd00418 161 ----------------TTLRALRRRGYLPEALRNYLALIGWSKPDGHELFTLEEMIAAFSVERVNSAD----ATFDWAKL 220 (230)
T ss_pred ----------------cCHHHHHHCCCcHHHHHHHHHHcCCCCCCCccccCHHHHHHhcCHhhCCCCC----cccCHHHH
Confidence 48999999999999999999999998742 34443 445555555544433 56677777
Q ss_pred EEeec
Q psy17575 634 HIVNF 638 (832)
Q Consensus 634 ~i~N~ 638 (832)
.+.|.
T Consensus 221 ~~~N~ 225 (230)
T cd00418 221 EWLNR 225 (230)
T ss_pred HHHHH
Confidence 66664
No 27
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=2.6e-56 Score=466.77 Aligned_cols=221 Identities=29% Similarity=0.435 Sum_probs=197.8
Q ss_pred ceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCc---------cc
Q psy17575 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ---------IT 389 (832)
Q Consensus 319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~---------~~ 389 (832)
+|+|||||||||+|||||+++||+||++||++||+|+|||||||++|+.+++++.|+++|+|||++||+ ++
T Consensus 1 ~v~~RfAPsPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~ 80 (239)
T cd00808 1 KVRTRFAPSPTGFLHIGGARTALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPY 80 (239)
T ss_pred CceEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECcCCCCCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCE
Confidence 489999999999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred ccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCCCC
Q psy17575 390 HSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQ 469 (832)
Q Consensus 390 ~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~~~ 469 (832)
+||+|++.|++++++|+++|
T Consensus 81 ~QS~r~~~y~~~~~~L~~~g------------------------------------------------------------ 100 (239)
T cd00808 81 RQSERLEIYRKYAEKLLEKG------------------------------------------------------------ 100 (239)
T ss_pred eeeCCHHHHHHHHHHHHHcC------------------------------------------------------------
Confidence 99999999999999999988
Q ss_pred CceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCccccccc-CCCCc
Q psy17575 470 DPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRL-NVNYT 548 (832)
Q Consensus 470 D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL-~l~gt 548 (832)
+| +|||+||+||||++|||||||||.||+.++++|.|++++||++.|.++++..+ +.+|.
T Consensus 101 --------------dg-----~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l~~aLg~~~p~~~h~pll~~~~g~ 161 (239)
T cd00808 101 --------------DG-----FPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLYEALGWEPPKFAHLPLILNPDGK 161 (239)
T ss_pred --------------CC-----CcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHHHHHcCCCCCceEeeccccCCCCC
Confidence 12 89999999999999999999999999999999999999999999965544443 55789
Q ss_pred ccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC--cccCHH-HHHHHHHHhhccCCCcee
Q psy17575 549 VVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ--AVVSPN-MLEAVVREVLNDTAPRVM 625 (832)
Q Consensus 549 kLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~--~~~~~~-~le~~~r~~l~~~a~R~~ 625 (832)
|||||+++ +||++||++|++|+||++|++.+||+..+ ..++.+ +++.|+-+.+.. ..
T Consensus 162 KLSKR~~~----------------~~l~~lr~~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~l~~~f~~~~~~~----~~ 221 (239)
T cd00808 162 KLSKRKGD----------------TSISDYREEGYLPEALLNYLALLGWSPPDGEEFFTLEELIELFDLERVSK----SP 221 (239)
T ss_pred cccCCCCC----------------ccHHHHHHCCCCHHHHHHHHHHcCCCCCCCCCcCCHHHHHhcCCHhhCCc----Cc
Confidence 99999964 48999999999999999999999998765 455654 667777666654 44
Q ss_pred EEecCcceEEeec
Q psy17575 626 VVIDPLPLHIVNF 638 (832)
Q Consensus 626 av~dp~kl~i~N~ 638 (832)
+++|+.||.+.|.
T Consensus 222 ~~~d~~kL~~~n~ 234 (239)
T cd00808 222 AIFDPEKLDWLNG 234 (239)
T ss_pred CcCCHHHHHHHHH
Confidence 7789999877763
No 28
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=100.00 E-value=6e-49 Score=389.91 Aligned_cols=160 Identities=50% Similarity=0.804 Sum_probs=136.4
Q ss_pred HHHHHHHHHhCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHHHHHhhccCCCccchHHHHHHHHhCCC
Q psy17575 62 ADSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQSSIHLPLLVKYIVSKAL 141 (832)
Q Consensus 62 ~~~l~~lF~~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy~lAtk~k~~~~~~r~~l~~~I~~gkl 141 (832)
++++++||++|||+|+||+||+||++++++|.++|++|+. ..+||+++|+|||+|||+++++..+||++|++||++|+|
T Consensus 3 ~eel~~lF~~iGL~e~kAket~KN~kls~~L~~iI~ea~~-~~~~dk~~g~LLy~lAtk~k~~~~~~r~~iv~~I~~gkl 81 (164)
T PF04558_consen 3 EEELIELFKSIGLSEKKAKETLKNKKLSASLKAIINEAGV-DSGCDKKQGNLLYQLATKLKPQALPHRPFIVKYIVDGKL 81 (164)
T ss_dssp HHHHHHHHHHTT--HHHHHHHTTSHHHHHHHHHHHHTS-T-T----HHHHHHHHHHHHHHTT---TTHHHHHHHHHTTS-
T ss_pred hHHHHHHHHHcCCChhhHHHHHhCHHHHHHHHHHHHHhcc-cCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHhCCC
Confidence 7899999999999999999999999999999999999987 578999999999999999999999999999999999999
Q ss_pred CCHHhHHHHHHHHHhCCC-ccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcccc-cchhhhHHHHHhhCCCC
Q psy17575 142 DSTLRVDAALEYVLSHVN-AVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYR-YNLGLVMQEVRTLLKWA 219 (832)
Q Consensus 142 kt~~Ql~aAlkyl~~~~~-~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~ry~-~n~g~ll~~vR~~LkWA 219 (832)
+|++||+||++|+++++. ++|.++||++|||||+||+|||+++|++||++|+++|+++||+ ||+|.+++++|..||||
T Consensus 82 kt~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cGVGV~VT~E~I~~~V~~~i~~~k~~i~~~Ry~~~~~~~~~~k~~~~LkWA 161 (164)
T PF04558_consen 82 KTNLQLDAALKYLKSNPSEPIDVAEFEKACGVGVVVTPEQIEAAVEKYIEENKEEILEKRYRLFNIGLLLVKVRPSLKWA 161 (164)
T ss_dssp -SHHHHHHHHHHHHHHGG-G--HHHHHHTTTTT----HHHHHHHHHHHHHHTHHHHHHHGGGGHHHHHHHHHT-GGGTTS
T ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHHHHcCCCeEECHHHHHHHHHHHHHHhHHHHHHHHhccCchhhHHHHHhccCCCC
Confidence 999999999999999987 5999999999999999999999999999999999999999999 99999999999999999
Q ss_pred Chh
Q psy17575 220 DGK 222 (832)
Q Consensus 220 d~k 222 (832)
||+
T Consensus 162 d~k 164 (164)
T PF04558_consen 162 DGK 164 (164)
T ss_dssp -T-
T ss_pred CCC
Confidence 996
No 29
>PF03950 tRNA-synt_1c_C: tRNA synthetases class I (E and Q), anti-codon binding domain; InterPro: IPR020059 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2HZ7_A 3AII_A 1ZJW_A 1GTS_A 2RD2_A 1QRU_A 1O0B_A 1NYL_A 1EUQ_A 2RE8_A ....
Probab=100.00 E-value=2.1e-43 Score=354.42 Aligned_cols=169 Identities=42% Similarity=0.773 Sum_probs=139.2
Q ss_pred CCceeEEecCcceEEeecCCCCceeEEeecCCCCCCCCceeEEeecceeEEeCCccccccccCccccCCCCeeeeeecCc
Q psy17575 621 APRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGL 700 (832)
Q Consensus 621 a~R~~av~dp~kl~i~N~~~~~~~~~~~~p~~P~~~~~G~~~v~~~~~iyIe~~D~~~~~~~~~~rL~~~~~V~L~~~~~ 700 (832)
|||+|||.||++|+|+|+|+ +..+++++|+||+++++|+|+++|+++||||++| |+||+||++|+||+|||
T Consensus 1 A~R~maV~dPv~v~I~n~~~-~~~~~~~~p~hPk~~~~G~r~v~~~~~i~Ie~~D--------~~~l~~g~~v~L~~~~n 71 (174)
T PF03950_consen 1 APRYMAVLDPVKVKITNFPE-DEPEEIEVPLHPKNPELGTREVPFSKTIYIERSD--------FFRLAPGKEVRLMYWGN 71 (174)
T ss_dssp SEEE-EECSEEEEEECT--S-SSEEEEEEESSTT-GGG-EEEEEECSEEEEEGGG----------SEETTCEEEETTTEE
T ss_pred CCcEEEECCCEEEEEEcCCC-CCEEEEEecCCCCCccCceEEEEECceEEEEhhH--------hhhccCCCEEEEeccce
Confidence 79999999999999999998 7889999999999999999999999999999999 56899999999999998
Q ss_pred eEEEeeEeecCCCCEEEEEEEEcCCCC--CCCCceEEEeccC--CceeEEEEcccccCCCCCCCCCCCCCCccccCCCCc
Q psy17575 701 VLEVDKVNTKCNGAITSIDVKATPVDV--DNKPKAFIHWVAR--PISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDS 776 (832)
Q Consensus 701 ~~~~~~~~~~~~g~v~e~~~~~~~~~~--~~k~k~~I~Wv~~--~~~~evr~y~~Lf~~~~p~~~~~~~~~~~~~iN~~S 776 (832)
+ .|+++.++.+|.|++++|++++.+. ++|++++|||||+ +++|++|+|++||++++ ++ +++ +||+|
T Consensus 72 i-~i~~~~~~~~g~v~~l~~~~~~~~~~~~~k~k~~I~Wv~~~~~v~~e~r~yd~Lf~~~~-~~------~~~--inp~s 141 (174)
T PF03950_consen 72 I-KITSIEKDEDGKVTELKARYDPEDKEGAKKPKAIIHWVSAKDSVPVEVRLYDHLFTVDN-DE------DDL--INPNS 141 (174)
T ss_dssp E-EEEEEEE-TTSSEEEEEEEEECTTHHHHHHHT-EE-EEEGCC-EEEEEEEE--SBSSS--GG------TGG--B-TTS
T ss_pred E-EEEEeeecCCCCEEEEEEEEecccccCCcccCcEEEEccCCCCeeeEEEEehhhcCCCc-cc------cce--ECCCC
Confidence 6 6899999999999999999998642 4688889999995 48999999999999877 43 455 99999
Q ss_pred eeEE-EEEeecCccCCCCCCeEEeEEeeeEEEe
Q psy17575 777 LKVS-IGYADSGFVGVKPYDRFQFERVGFFTVD 808 (832)
Q Consensus 777 ~~~~-~~~~e~~~~~~~~~~~~QfeR~Gyf~~D 808 (832)
+.++ .|++|+++.++++|++|||||+|||+||
T Consensus 142 ~~~~~~~~~E~~~~~~k~g~~vQfER~Gyf~vD 174 (174)
T PF03950_consen 142 LKVVKNGLVEPALKNLKPGDIVQFERRGYFRVD 174 (174)
T ss_dssp EEEEEEEEE-GGGGGS-TT-EEEETTTEEEEEE
T ss_pred cEEccCEEEchhHHhCCCCCEEeEEEeeEEEeC
Confidence 9995 6999999999999999999999999998
No 30
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.65 E-value=1.2e-15 Score=174.89 Aligned_cols=265 Identities=17% Similarity=0.211 Sum_probs=181.3
Q ss_pred CCceEEe-eCCCCCCcCchHHHHHHHHHHHHHHh-----cCCEEEEeccCCCcccc-------------cHHHHHHHHHH
Q psy17575 317 GGKVRTR-FPPEPNGILHIGHAKAININFGYAAA-----HNGICFLRYDDTNPEKE-------------EEKFFTGIKDM 377 (832)
Q Consensus 317 ~~~v~tR-FaPsPtG~LHIGharaaL~n~l~Ar~-----~gG~~iLRiDDTDp~r~-------------~~e~~~~I~ed 377 (832)
.+.|... .+|+|+|++||||+|+.++...+||. +...|+..++|+|++-. ...|.+.+.++
T Consensus 21 ~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~ 100 (463)
T PRK00260 21 PGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHED 100 (463)
T ss_pred CCcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3455555 78999999999999999999888887 78899999999997642 35789999999
Q ss_pred HHHcCC-CcCcccccchhHHHHHHHHHHHHHcCCccccCCCHH-HHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCC
Q psy17575 378 VQWLGY-KPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSD-EMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGE 455 (832)
Q Consensus 378 L~WLGl-~pd~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~e-el~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~ 455 (832)
+++||+ .|+.....|++.+.+++++++|+++|+||.+.-+.- ++.++..+ +.-..+. .++|..|.
T Consensus 101 ~~~Lgi~~~d~~~r~t~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~~~y-g~ls~~~-------~~~~~~~~----- 167 (463)
T PRK00260 101 MDALNVLPPDIEPRATEHIPEIIELIERLIDKGHAYEADGDVYFDVRKFPDY-GKLSGRN-------LDELQAGA----- 167 (463)
T ss_pred HHHcCCCCCCccccccccHHHHHHHHHHHHHCCCEEEecCeEEEeccccccc-ccCCCCC-------HHHHhccC-----
Confidence 999999 567666778899999999999999999996521110 11222111 1111111 23444441
Q ss_pred ceEEEEecc-cCCCCCceEEEeeeCCCCCCCCce-eEeeccceee-eeecCCCCcceeee--ccccc-ccchhHHHHHHh
Q psy17575 456 ATLRMKITL-EEGKQDPVAYRIKFLPHHRTGDSW-CIYPTYDYTH-CLCDSIEHITHSLC--TKEFQ-SRRSSYYWLCNA 529 (832)
Q Consensus 456 ~~lR~K~~~-~~~~~D~V~~Ri~~~~h~r~gd~~-~i~PtY~fA~-~VdD~l~gITHvlR--g~E~~-~~~~~~~~L~~a 529 (832)
|...+. .....|+++|+-....++.-...| .+.|.+|..| +......|.+--|+ |.|++ ++....+....+
T Consensus 168 ---~~~~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~~~~lg~~~Dih~gG~DlifpHh~neiaqs~a 244 (463)
T PRK00260 168 ---RVEVAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADLIFPHHENEIAQSEA 244 (463)
T ss_pred ---cCCcccCCCCccccceecCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhcCCCcceecCccccCCCchHhHHHHHHH
Confidence 111111 112379999985433232111223 2499999999 55777888877777 89986 566666666556
Q ss_pred c-CCCCCCcc-cccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHH
Q psy17575 530 L-DIYCPVQW-EYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPN 607 (832)
Q Consensus 530 L-~~~~P~~~-ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~ 607 (832)
+ |.+.+.+| +++++.++|.|||||+++ ..++..+.+. +.|++|+-|++. +-.+++..++++
T Consensus 245 ~~g~p~~~~w~H~g~v~~~G~KMSKS~GN---------------~i~~~dll~~-~~~d~lR~~ll~-~~~~~~~~fs~~ 307 (463)
T PRK00260 245 ATGKPFANYWMHNGFVTVNGEKMSKSLGN---------------FFTIRDLLKK-YDPEVLRFFLLS-AHYRSPLNFSEE 307 (463)
T ss_pred hcCCCcceEEEEccEEccCCCcccCcCCC---------------CCCHHHHHHH-cCchHhHHHHHh-CCCCCCCccCHH
Confidence 4 52222244 367888999999999864 2367777774 999999999886 335567778887
Q ss_pred HHHHHHH
Q psy17575 608 MLEAVVR 614 (832)
Q Consensus 608 ~le~~~r 614 (832)
.|+...+
T Consensus 308 ~l~~a~~ 314 (463)
T PRK00260 308 ALEQAKK 314 (463)
T ss_pred HHHHHHH
Confidence 7766544
No 31
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.64 E-value=1.9e-15 Score=173.27 Aligned_cols=259 Identities=16% Similarity=0.198 Sum_probs=178.0
Q ss_pred eeCCCCCCcCchHHHHHHHHHHHHHH-----hcCCEEEEeccCCCcccc-------------cHHHHHHHHHHHHHcCCC
Q psy17575 323 RFPPEPNGILHIGHAKAININFGYAA-----AHNGICFLRYDDTNPEKE-------------EEKFFTGIKDMVQWLGYK 384 (832)
Q Consensus 323 RFaPsPtG~LHIGharaaL~n~l~Ar-----~~gG~~iLRiDDTDp~r~-------------~~e~~~~I~edL~WLGl~ 384 (832)
=-.|+|+|++||||+|+++....++| .+...|+..+||+|++-. ...|.+.+.+++++||+.
T Consensus 26 vcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~LgI~ 105 (465)
T TIGR00435 26 VCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKALNVL 105 (465)
T ss_pred EecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 34699999999999999999988888 788999999999998642 257899999999999998
Q ss_pred cCc-ccccchhHHHHHHHHHHHHHcCCccccC-CCHH-HHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEE
Q psy17575 385 PYQ-ITHSSDYFHQLYEWAVKLIKKGLAYVCH-QKSD-EMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMK 461 (832)
Q Consensus 385 pd~-~~~qSd~~~~~ye~A~~Li~~G~AY~C~-Cs~e-el~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K 461 (832)
++. ....|++.+.++++.++|+++|+||.+. -+.- .+..+..+ +....+.. ++|..|.- ..
T Consensus 106 ~d~~~~raT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~~y-G~ls~~~~-------~~~~~~~~--------~~ 169 (465)
T TIGR00435 106 PPDLEPRATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFKDY-GKLSKQDL-------DQLEAGAR--------VD 169 (465)
T ss_pred CCcCCccccccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccchh-ccCCCCCH-------HHHhcccc--------cC
Confidence 775 4578899999999999999999999764 1110 11111111 11111221 23444421 11
Q ss_pred ecc-cCCCCCceEEEeeeCCCCCCCCce-eEeeccceeeee-ecCCCCcceeee--ccccc-ccchhHHHHHHhc-CCCC
Q psy17575 462 ITL-EEGKQDPVAYRIKFLPHHRTGDSW-CIYPTYDYTHCL-CDSIEHITHSLC--TKEFQ-SRRSSYYWLCNAL-DIYC 534 (832)
Q Consensus 462 ~~~-~~~~~D~V~~Ri~~~~h~r~gd~~-~i~PtY~fA~~V-dD~l~gITHvlR--g~E~~-~~~~~~~~L~~aL-~~~~ 534 (832)
++. .....|+++|+.....++.-...| .+.|.+|..|++ .....|.+--|+ |.|++ ++......+..++ |.+.
T Consensus 170 ~~~~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~~~~lg~~~Dih~gG~Dl~fpHhene~aqs~a~~g~~~ 249 (465)
T TIGR00435 170 VDEAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIFPHHENEIAQSEAAFGKQL 249 (465)
T ss_pred cccccCCCCCceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHHHHhcCCCceeeccccccccchHHHHHHHHHHhcCCCC
Confidence 111 112379999986543222111223 259999999885 355556444444 88987 5666666666664 6444
Q ss_pred CCcc-cccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHH
Q psy17575 535 PVQW-EYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVV 613 (832)
Q Consensus 535 P~~~-ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~ 613 (832)
+.+| +++++.++|.|||||+++ ..++..+.+. +.|+|++-|+.... .+++..|+++.|+...
T Consensus 250 ~~~~~h~g~v~~~g~KMSKS~GN---------------~i~~~dll~~-~~~dalR~~ll~~~-~~~~l~fs~~~l~~a~ 312 (465)
T TIGR00435 250 AKYWMHNGFLMIDNEKMSKSLGN---------------FFTVRDVLKN-YDPEILRYFLLSVH-YRSPLDFSEELLEAAK 312 (465)
T ss_pred CcEEEEeeEEEecCccccccCCC---------------cCCHHHHHHH-CCHHHHHHHHHhCC-CCCCCccCHHHHHHHH
Confidence 4443 478889999999999964 2378887775 99999999998765 5667788988887765
Q ss_pred H
Q psy17575 614 R 614 (832)
Q Consensus 614 r 614 (832)
+
T Consensus 313 ~ 313 (465)
T TIGR00435 313 N 313 (465)
T ss_pred H
Confidence 4
No 32
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.60 E-value=2.5e-15 Score=162.01 Aligned_cols=256 Identities=16% Similarity=0.167 Sum_probs=162.5
Q ss_pred CCCCCCcCchHHHHHHHHH-----HHHHHhcCCEEEEeccCCCcccc-------------cHHHHHHHHHHHHHcCCCc-
Q psy17575 325 PPEPNGILHIGHAKAININ-----FGYAAAHNGICFLRYDDTNPEKE-------------EEKFFTGIKDMVQWLGYKP- 385 (832)
Q Consensus 325 aPsPtG~LHIGharaaL~n-----~l~Ar~~gG~~iLRiDDTDp~r~-------------~~e~~~~I~edL~WLGl~p- 385 (832)
.|++..+.||||+|++++- ||-...+.-.++..|.|+|.+-- ...|++.+.+||+.||+.+
T Consensus 15 GPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~dm~~Lnv~~p 94 (300)
T PF01406_consen 15 GPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFEDMKALNVLPP 94 (300)
T ss_dssp EEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----
T ss_pred CCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 5999999999999999976 44455677799999999996531 3578999999999999986
Q ss_pred CcccccchhHHHHHHHHHHHHHcCCccccC-CCHH-HHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEec
Q psy17575 386 YQITHSSDYFHQLYEWAVKLIKKGLAYVCH-QKSD-EMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKIT 463 (832)
Q Consensus 386 d~~~~qSd~~~~~ye~A~~Li~~G~AY~C~-Cs~e-el~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~ 463 (832)
+.....|++++.+.+++++|+++|+||.-. -+.- ++.++..+ +.-..+.. ++|..|.-.+.. .
T Consensus 95 ~~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~~~~Y-G~Ls~~~~-------~~l~~~~~~~~~-------~ 159 (300)
T PF01406_consen 95 DHYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVSKFPDY-GKLSNQDL-------EDLEAGARVEVD-------Y 159 (300)
T ss_dssp SEEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCGSTTT-TTTTT-SH-------HHHHHCHHHTT--------T
T ss_pred ccccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeecccccc-ccccccch-------hhHHhhhhcccc-------c
Confidence 577899999999999999999999999865 3222 23332211 11111222 334444322111 1
Q ss_pred ccCCCCCceEEEeeeCCCCCCCCce-eEeeccceeeee-ecCCCCcceeee--ccccc-ccchhHHHHHHhc-CCCCCCc
Q psy17575 464 LEEGKQDPVAYRIKFLPHHRTGDSW-CIYPTYDYTHCL-CDSIEHITHSLC--TKEFQ-SRRSSYYWLCNAL-DIYCPVQ 537 (832)
Q Consensus 464 ~~~~~~D~V~~Ri~~~~h~r~gd~~-~i~PtY~fA~~V-dD~l~gITHvlR--g~E~~-~~~~~~~~L~~aL-~~~~P~~ 537 (832)
......|+++|+-.....+.=...| .+.|.+|..|++ .....|-+--|. |.|++ ++.+..+.+++++ |-....+
T Consensus 160 ~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~g~~~a~~ 239 (300)
T PF01406_consen 160 EKRNPRDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAATGKPFANY 239 (300)
T ss_dssp TSSSTT-EEEEEE--TTS--B--TTSSEEE-HHHHHHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHHSS-SEEE
T ss_pred ccCCCcceeeeecccccCCcccCCCccCcCceeeehHHHHHHHcCCCceEEccccccCCCCccchHHHHHHhhCchHHHH
Confidence 1123479999986532211111112 469999999887 555556555555 89998 8888888899887 5333344
Q ss_pred cc-ccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHH
Q psy17575 538 WE-YGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAV 612 (832)
Q Consensus 538 ~e-f~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~ 612 (832)
|- -+||.++|.||||+.++ +.||+.+..+ ++|.+|+-||..-. .++...++++.|+..
T Consensus 240 W~H~g~l~~~g~KMSKSlgN---------------~~~i~dll~~-~~~~~lR~~~l~~h-Yr~~l~~s~~~l~~A 298 (300)
T PF01406_consen 240 WMHNGHLNVDGEKMSKSLGN---------------FITIRDLLKK-YSPDALRLFLLSTH-YRKPLNFSEENLEEA 298 (300)
T ss_dssp EEEE--EEETTCE--TTTT------------------BHHHHHTT-S-HHHHHHHHHTS--TTS-EEE-HHHHHHH
T ss_pred HHHHHHHhhcCccccccCCC---------------EEEHHHHhhc-CCHHHHHHHHhcCC-CCCccccCHHHHHHh
Confidence 43 47889999999999865 3589999875 99999999887766 567788999988764
No 33
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=5.3e-15 Score=166.69 Aligned_cols=258 Identities=17% Similarity=0.173 Sum_probs=184.4
Q ss_pred CCCCCCcCchHHHHHHHHHHHHHH---hcCC--EEEEeccCCCcccc-------------cHHHHHHHHHHHHHcCCC-c
Q psy17575 325 PPEPNGILHIGHAKAININFGYAA---AHNG--ICFLRYDDTNPEKE-------------EEKFFTGIKDMVQWLGYK-P 385 (832)
Q Consensus 325 aPsPtG~LHIGharaaL~n~l~Ar---~~gG--~~iLRiDDTDp~r~-------------~~e~~~~I~edL~WLGl~-p 385 (832)
.|++..|.||||+|++++--.+.| ..|+ +|+..|.|+|.+-- .+.|+....+|++.||+. |
T Consensus 29 GpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D~~aL~v~~p 108 (464)
T COG0215 29 GPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMDALNVLPP 108 (464)
T ss_pred CCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 599999999999999987644443 3444 89999999997631 357899999999999995 6
Q ss_pred CcccccchhHHHHHHHHHHHHHcCCcccc-CCCHH-HHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEec
Q psy17575 386 YQITHSSDYFHQLYEWAVKLIKKGLAYVC-HQKSD-EMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKIT 463 (832)
Q Consensus 386 d~~~~qSd~~~~~ye~A~~Li~~G~AY~C-~Cs~e-el~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~ 463 (832)
+.....+++.+.+.+++++||++|+||+- .-+.. +..++..+..--+.... +++..|.-.+....
T Consensus 109 ~~~PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f~~YG~LS~~~~l-------e~l~~gar~~~~~~------ 175 (464)
T COG0215 109 DIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFKDYGKLSGRDSL-------EELQAGARVEVDEE------ 175 (464)
T ss_pred cccCcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEecccchhhHhhcCCCCh-------hHHhhccccccccc------
Confidence 88889999999999999999999999986 33322 33333211000001111 23333321111110
Q ss_pred ccCCCCCceEEEeeeCCCCCCCCce-eEeeccceeeee-ecCCCCcceeee--ccccc-ccchhHHHHHHhcCC-CC-CC
Q psy17575 464 LEEGKQDPVAYRIKFLPHHRTGDSW-CIYPTYDYTHCL-CDSIEHITHSLC--TKEFQ-SRRSSYYWLCNALDI-YC-PV 536 (832)
Q Consensus 464 ~~~~~~D~V~~Ri~~~~h~r~gd~~-~i~PtY~fA~~V-dD~l~gITHvlR--g~E~~-~~~~~~~~L~~aL~~-~~-P~ 536 (832)
.....|+|+|+-.....|.=..-| .+.|.||.-|++ .+...|-+--|. |.|++ +++...+..++++.- .+ ..
T Consensus 176 -Krnp~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiFPHHENEiAQsea~~g~~~~a~ 254 (464)
T COG0215 176 -KRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIFPHHENEIAQSEAATGVKPFAK 254 (464)
T ss_pred -cCCchhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhCCCcceecCcccccCCCcccHHHHHHhhhCCCccee
Confidence 112379999996544333211223 369999999988 777888888888 89998 899999999998754 22 44
Q ss_pred ccc-ccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHH
Q psy17575 537 QWE-YGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVV 613 (832)
Q Consensus 537 ~~e-f~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~ 613 (832)
+|- -++|+++|.||||+.++ +.|++.+.+. +.|++|+-|+.... .+++..++.+.|+...
T Consensus 255 yWmH~G~l~i~geKMSKSLGN---------------fiti~d~l~~-~~p~~lR~~lls~H-YR~pl~fsee~L~~A~ 315 (464)
T COG0215 255 YWMHNGFLNIDGEKMSKSLGN---------------FITVRDLLKK-YDPEVLRLFLLSSH-YRSPLDFSEELLEEAK 315 (464)
T ss_pred EeEEcceeeecCcCcccccCC---------------eeEHHHHHhh-cCHHHHHHHHHHHH-hCCccccCHHHHHHHH
Confidence 553 57789999999999865 4589998887 99999999998877 6777888888887654
No 34
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.57 E-value=3.7e-15 Score=154.32 Aligned_cols=176 Identities=18% Similarity=0.105 Sum_probs=129.6
Q ss_pred eCCCCCCcCchHHHHHHHHHHHHHH-----hcCCEEEEeccCCCccc------------ccHHHHHHHHHHHHHcCCCcC
Q psy17575 324 FPPEPNGILHIGHAKAININFGYAA-----AHNGICFLRYDDTNPEK------------EEEKFFTGIKDMVQWLGYKPY 386 (832)
Q Consensus 324 FaPsPtG~LHIGharaaL~n~l~Ar-----~~gG~~iLRiDDTDp~r------------~~~e~~~~I~edL~WLGl~pd 386 (832)
.+|+|||+|||||+|++++-..+|| .+.-.+.-=++|.+.+- -...+.+.+.+++++||+.+|
T Consensus 7 ~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L~i~~d 86 (212)
T cd00671 7 VSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRLDVRFD 86 (212)
T ss_pred cCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCc
Confidence 4799999999999999887655554 34445555566776542 234677889999999999998
Q ss_pred cccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccC
Q psy17575 387 QITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEE 466 (832)
Q Consensus 387 ~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~ 466 (832)
.....|++.....+..++|+++|.+|.-. |..++++ +...
T Consensus 87 ~~~~es~~~~~~~~~i~~L~~~g~~~~~~--------------------------------------g~~~~~~--~~~~ 126 (212)
T cd00671 87 VWFGESSYLGLMGKVVELLEELGLLYEED--------------------------------------GALWLDL--TEFG 126 (212)
T ss_pred eecchhhhhhHHHHHHHHHHHCCCEEEeC--------------------------------------CcEEEec--hhhC
Confidence 77778887777778888999999997311 1001000 0000
Q ss_pred CCCCceEEEeeeCCCCCCCCceeEeeccc---eeeeeecCCCCccee--eecccccccchhHHHHHHhcCCC-CCCcccc
Q psy17575 467 GKQDPVAYRIKFLPHHRTGDSWCIYPTYD---YTHCLCDSIEHITHS--LCTKEFQSRRSSYYWLCNALDIY-CPVQWEY 540 (832)
Q Consensus 467 ~~~D~V~~Ri~~~~h~r~gd~~~i~PtY~---fA~~VdD~l~gITHv--lRg~E~~~~~~~~~~L~~aL~~~-~P~~~ef 540 (832)
...|+|+-| ++| .|||. +|+.+++..+++||+ |+|.|+..+.+++.+++++||+. .| .+
T Consensus 127 ~~~d~vl~r-------sdG-----~~~Y~~~DlA~~~~~~~~~~~~~i~v~g~~~~~~~~~~~~~~~~lg~~~~~---~~ 191 (212)
T cd00671 127 DDKDRVLVR-------SDG-----TYTYFTRDIAYHLDKFERGADKIIYVVGADHHGHFKRLFAALELLGYDEAK---KL 191 (212)
T ss_pred CCCCeEEEE-------CCC-----CccchHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHHHHHHcCCCCCC---Ce
Confidence 124677776 455 57888 799999999999999 99999999999999999999986 34 34
Q ss_pred ccc-----CCC-CcccchhH
Q psy17575 541 GRL-----NVN-YTVVSKRK 554 (832)
Q Consensus 541 ~hL-----~l~-gtkLSKRk 554 (832)
.|+ .+. |.+||||+
T Consensus 192 ~h~~~~~v~~~~~~kmS~R~ 211 (212)
T cd00671 192 EHLLYGMVNLPKEGKMSTRA 211 (212)
T ss_pred EEEEEEeEEcCCCCCCCCCC
Confidence 454 444 88999997
No 35
>PF04557 tRNA_synt_1c_R2: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 ; InterPro: IPR007638 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a region found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This region is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004819 glutamine-tRNA ligase activity, 0005524 ATP binding, 0006425 glutaminyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=99.54 E-value=1.5e-15 Score=135.83 Aligned_cols=83 Identities=47% Similarity=0.640 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHhhcCCCcccccCCCCccccccccCCC-CCcccccCCccccccchhhhhhccccCCCCCCCCCccCCccc
Q psy17575 223 YIKSEVDVQVLNLLGPKTEADLAPVPKVKVNEKKSKP-KSNETQENGFEFVEENVNIGDLMKKLPFHKPGENFKSDGYVV 301 (832)
Q Consensus 223 ~vK~~vD~~~l~lLGPKte~d~~kk~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~~ 301 (832)
+||++||.||++|||||||+|+++++|++++++++.. ..+....+.+...++..++++|++.++||+|||||+
T Consensus 1 avK~evD~qil~LLGPKteaD~~k~~K~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~fHkPGEN~k------ 74 (84)
T PF04557_consen 1 AVKNEVDAQILELLGPKTEADLVKKKKKKKKKKKKAKKKKKEAKANAEEESERAMFEEGFLGDLHFHKPGENYK------ 74 (84)
T ss_dssp -HHHHHHHHHHHHH-S--GGG-----------------------------------------------------------
T ss_pred CcHHHHHHHHHHHhCCCccccccCCCCCCCCCcccccccccccccccCCCCCccchhhhhhcccCCCCccccCC------
Confidence 5899999999999999999999988776654332211 111111111211334556678886667999999976
Q ss_pred ccccHHHHHHh
Q psy17575 302 TEQTHDLLREH 312 (832)
Q Consensus 302 ~~~~~~~~~~h 312 (832)
++|+++|.+|
T Consensus 75 -pqt~~~L~~h 84 (84)
T PF04557_consen 75 -PQTMPLLKKH 84 (84)
T ss_dssp -----------
T ss_pred -cchHHHHhcC
Confidence 5778888887
No 36
>PLN02946 cysteine-tRNA ligase
Probab=99.49 E-value=6.3e-14 Score=162.69 Aligned_cols=257 Identities=14% Similarity=0.124 Sum_probs=177.0
Q ss_pred CCCCCCcCchHHHHHHHHHHHHHH-----hcCCEEEEeccCCCcccc-------------cHHHHHHHHHHHHHcCCCc-
Q psy17575 325 PPEPNGILHIGHAKAININFGYAA-----AHNGICFLRYDDTNPEKE-------------EEKFFTGIKDMVQWLGYKP- 385 (832)
Q Consensus 325 aPsPtG~LHIGharaaL~n~l~Ar-----~~gG~~iLRiDDTDp~r~-------------~~e~~~~I~edL~WLGl~p- 385 (832)
.|++.|+.||||+|++++-..++| .+.-.|+.-|+|.|.+-. ...|.+.+.++++.||+.+
T Consensus 87 GpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d~~~LnI~~p 166 (557)
T PLN02946 87 GVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDMAYLHCLPP 166 (557)
T ss_pred CCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 799999999999999998866665 466789999999996631 3578899999999999864
Q ss_pred CcccccchhHHHHHHHHHHHHHcCCccccCCCHH-HHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecc
Q psy17575 386 YQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSD-EMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITL 464 (832)
Q Consensus 386 d~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~e-el~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~ 464 (832)
+..+..|++.+.+.+++++|+++|+||.-.-+.- ++.++..+ +.-..+. .++|..|. |..++.
T Consensus 167 ~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~f~~Y-G~Ls~~~-------l~~l~~g~--------rv~~~~ 230 (557)
T PLN02946 167 SVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKFPEY-GKLSGRK-------LEDNRAGE--------RVAVDS 230 (557)
T ss_pred CeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCcchhh-hhcCCCC-------hhHhhcCC--------CCCccc
Confidence 4567889999999999999999999996321110 11222111 1111111 23444442 111111
Q ss_pred -cCCCCCceEEEeeeCCCCCCCCce-eEeeccceeeee-ecCCCCcceeee--ccccc-ccchhHHHHHHhc-CCCCCCc
Q psy17575 465 -EEGKQDPVAYRIKFLPHHRTGDSW-CIYPTYDYTHCL-CDSIEHITHSLC--TKEFQ-SRRSSYYWLCNAL-DIYCPVQ 537 (832)
Q Consensus 465 -~~~~~D~V~~Ri~~~~h~r~gd~~-~i~PtY~fA~~V-dD~l~gITHvlR--g~E~~-~~~~~~~~L~~aL-~~~~P~~ 537 (832)
.....|+++|+-....++.=...| .+.|.||..|++ .....|-+--|. |.|++ +++...+...++. |.....+
T Consensus 231 ~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWHIECSaMs~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~a~y 310 (557)
T PLN02946 231 RKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACCDSNISY 310 (557)
T ss_pred ccCCccccceeccCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcCCCeeEeccccccCCCcccchHHHHHHHhCCCCCce
Confidence 112379999985432112111123 469999999987 445566666666 88997 7777777777764 4332224
Q ss_pred c-cccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHH
Q psy17575 538 W-EYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVR 614 (832)
Q Consensus 538 ~-ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r 614 (832)
| +++++.++|.|||||.++ ..|+..+.+. |.|++++-|++..+ .+++..|+++.|+...+
T Consensus 311 W~H~G~v~~~G~KMSKSlGN---------------~itl~dll~~-y~~dalR~~lLs~h-yr~~l~fs~e~L~~a~~ 371 (557)
T PLN02946 311 WIHNGFVTVDSEKMSKSLGN---------------FFTIRQVIDL-YHPLALRLFLLGTH-YRSPINYSDVQLESASE 371 (557)
T ss_pred eeEeeEEEeCCCCcCCcCCC---------------cCCHHHHHHh-cCccceeeeeeccC-CCCCcEecHHHHHHHHH
Confidence 4 468899999999999864 2478888875 99999999998755 56777899888877643
No 37
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.47 E-value=1.4e-13 Score=153.92 Aligned_cols=264 Identities=14% Similarity=0.072 Sum_probs=176.6
Q ss_pred eCCCCCCcCchHHHHHHHHHHHHHH-----hcCCEEEEeccCCCcccc-------------cHHHHHHHHHHHHHcCC-C
Q psy17575 324 FPPEPNGILHIGHAKAININFGYAA-----AHNGICFLRYDDTNPEKE-------------EEKFFTGIKDMVQWLGY-K 384 (832)
Q Consensus 324 FaPsPtG~LHIGharaaL~n~l~Ar-----~~gG~~iLRiDDTDp~r~-------------~~e~~~~I~edL~WLGl-~ 384 (832)
-.|+|.|++||||+|+++.--.++| .+.-.|+.-++|.|.+-. ...|.+.+.++++.||+ .
T Consensus 15 CGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~~Lni~~ 94 (384)
T PRK12418 15 CGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDMEALRVLP 94 (384)
T ss_pred cCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3599999999999999988766655 345789999999987632 34688899999999997 6
Q ss_pred cCcccccchhHHHHHHHHHHHHHcCCccccCC----CHH-HHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEE
Q psy17575 385 PYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQ----KSD-EMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLR 459 (832)
Q Consensus 385 pd~~~~qSd~~~~~ye~A~~Li~~G~AY~C~C----s~e-el~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR 459 (832)
|+..+..|++.+.+.++.++|+++|.||.-.- +.- ++.++..+ +.-..+.. ++|..|..... ...
T Consensus 95 ~~~~~raTe~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~Y-G~ls~~~~-------~~~~~~~~~~~-~~~- 164 (384)
T PRK12418 95 PRDYVGAVESIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDATPQF-GYESGYDR-------ATMLELFAERG-GDP- 164 (384)
T ss_pred CCccccCCCCHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCchhhc-ccccCCCH-------HHHHhhhcccc-cCc-
Confidence 77778889999999999999999999996432 111 22222111 11111222 23332100000 000
Q ss_pred EEecccCCCCCceEEEeeeCCCCCCCCce-eEeeccceeeee-ecCCCCcceeee--ccccc-ccchhHHHHHHhc-CC-
Q psy17575 460 MKITLEEGKQDPVAYRIKFLPHHRTGDSW-CIYPTYDYTHCL-CDSIEHITHSLC--TKEFQ-SRRSSYYWLCNAL-DI- 532 (832)
Q Consensus 460 ~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~-~i~PtY~fA~~V-dD~l~gITHvlR--g~E~~-~~~~~~~~L~~aL-~~- 532 (832)
.-.......|+++||-....++.=...| .+.|.+|..|++ .....|-+--|+ |.|++ ++.+..+....++ |-
T Consensus 165 -~~~~K~~p~DFaLWK~~~~~~~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHeneiaq~~a~~g~~ 243 (384)
T PRK12418 165 -DRPGKRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAATGER 243 (384)
T ss_pred -ccccCCCcccceeeccCCCCCCcccCCCCCCCChhHHHHHHHHHHHcCCCcccccCccccccchhHhHHHHHHHhcCCC
Confidence 0001113479999996532122111123 469999999887 555666666677 68997 6777777777775 33
Q ss_pred CCCCccc-ccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHH
Q psy17575 533 YCPVQWE-YGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEA 611 (832)
Q Consensus 533 ~~P~~~e-f~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~ 611 (832)
+.+.+|- -++|.++|.||||+.++ ..++..+.+.|+.|.+++-|+. .+-.+++..++++.|+.
T Consensus 244 ~~~~~w~H~g~l~~~G~KMSKSlGN---------------~i~~~ell~~G~d~~~lR~~ll-s~~yr~~l~fs~e~l~~ 307 (384)
T PRK12418 244 RFARHYVHAGMIGLDGEKMSKSRGN---------------LVFVSRLRAAGVDPAAIRLALL-AGHYRADREWTDAVLAE 307 (384)
T ss_pred CcceEEEECCEECCCCCcccCcCCC---------------cCCHHHHHhccCChhheeEEEe-ccCCCCCcccCHHHHHH
Confidence 2233443 35678899999999874 2478888888999999999886 44456678899988877
Q ss_pred HHH
Q psy17575 612 VVR 614 (832)
Q Consensus 612 ~~r 614 (832)
..+
T Consensus 308 a~~ 310 (384)
T PRK12418 308 AEA 310 (384)
T ss_pred HHH
Confidence 544
No 38
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.46 E-value=4.7e-13 Score=153.84 Aligned_cols=254 Identities=13% Similarity=0.138 Sum_probs=174.9
Q ss_pred CCCCCCcCchHHHHHHHHHHHHHH-----hcCCEEEEeccCC----------Ccccc-------------cHHHHHHHHH
Q psy17575 325 PPEPNGILHIGHAKAININFGYAA-----AHNGICFLRYDDT----------NPEKE-------------EEKFFTGIKD 376 (832)
Q Consensus 325 aPsPtG~LHIGharaaL~n~l~Ar-----~~gG~~iLRiDDT----------Dp~r~-------------~~e~~~~I~e 376 (832)
.|+++++.||||+|+++.--.++| .+.-.|+..|.|+ |++-. ...|.+.+.+
T Consensus 30 GpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a~~~~~~f~~ 109 (490)
T PRK14536 30 GPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAAHYTAAFFR 109 (490)
T ss_pred CCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 599999999999999888766555 4556888899999 66521 2468889999
Q ss_pred HHHHcCCCc-CcccccchhHHHHHHHHHHHHHcCCcccc-----CCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCc
Q psy17575 377 MVQWLGYKP-YQITHSSDYFHQLYEWAVKLIKKGLAYVC-----HQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGL 450 (832)
Q Consensus 377 dL~WLGl~p-d~~~~qSd~~~~~ye~A~~Li~~G~AY~C-----~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~ 450 (832)
+++.||+.+ +..+..+++.+.+.+++.+|+++|.||.- ||. .++..+ +.-..+. .++|..|.
T Consensus 110 d~~~Lni~~~~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv----~~~~~Y-G~Ls~~~-------~~~l~~g~ 177 (490)
T PRK14536 110 DTARLNIERPSIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDI----RTFPSY-GSLASAA-------VEDLQAGA 177 (490)
T ss_pred HHHHcCCCCCceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeC----Ccccch-hhhcCCC-------HHHhhcCC
Confidence 999999976 45577899999999999999999999953 332 111110 1111112 23344442
Q ss_pred ccCCCceEEEEecc-cCCCCCceEEEeeeC-C--CCCCCCce-eEeeccceeeee-ecCCCCcceeee--ccccc-ccch
Q psy17575 451 IDEGEATLRMKITL-EEGKQDPVAYRIKFL-P--HHRTGDSW-CIYPTYDYTHCL-CDSIEHITHSLC--TKEFQ-SRRS 521 (832)
Q Consensus 451 ~~~g~~~lR~K~~~-~~~~~D~V~~Ri~~~-~--h~r~gd~~-~i~PtY~fA~~V-dD~l~gITHvlR--g~E~~-~~~~ 521 (832)
. ...+. .....|+++|+.... + .+.=...| .+.|.+|..|++ .....|-+-.|. |.|++ +++.
T Consensus 178 ~--------v~~~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRPGWHIECsaMs~~~lg~~~DIH~GG~DliFPHHe 249 (490)
T PRK14536 178 R--------IEHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQCDIHIGGVDHIRVHHT 249 (490)
T ss_pred c--------CCCCCCCCCchhchhcccccCCCCCCCcccCCCCCCCCChHHHHHHHHHHHcCCceeEEeccccCCCcchh
Confidence 1 11111 112379999975421 1 11001123 359999998887 333345444555 88997 7888
Q ss_pred hHHHHHHhc-CCCCCCccc-ccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCC
Q psy17575 522 SYYWLCNAL-DIYCPVQWE-YGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTG 599 (832)
Q Consensus 522 ~~~~L~~aL-~~~~P~~~e-f~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~ 599 (832)
..+.+.+++ |...+.+|- -++|.++|.|||||.++ ..|++.+.+.|+.|+|++-|+.... .+
T Consensus 250 neiAqs~a~~g~~~~~~w~h~g~l~~~g~KMSKSlGN---------------~itl~dll~~g~~~~alR~~lls~~-yr 313 (490)
T PRK14536 250 NEIAQCEAATGKPWVRYWLHHEFLLMNKGKMSKSAGQ---------------FLTLSSLQEKGFQPLDYRFFLLGGH-YR 313 (490)
T ss_pred hHHHHHHHhcCCCcceEEEEcCEEeecCccccccCCC---------------cccHHHHHhcCCCHHHHHHHHHhCC-CC
Confidence 888887776 544444543 56788899999999964 3589999999999999999888744 66
Q ss_pred CCcccCHHHHHHHHH
Q psy17575 600 AQAVVSPNMLEAVVR 614 (832)
Q Consensus 600 ~~~~~~~~~le~~~r 614 (832)
++..|+++.|+...+
T Consensus 314 ~~l~Fs~e~l~~a~~ 328 (490)
T PRK14536 314 SQLAFSWEALKTAKA 328 (490)
T ss_pred CCCCCCHHHHHHHHH
Confidence 778899988877655
No 39
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.46 E-value=4.1e-13 Score=153.80 Aligned_cols=253 Identities=17% Similarity=0.151 Sum_probs=174.0
Q ss_pred CCCCCCcCchHHHHHHHHHHHHHH-----hcCCEEEEeccCC----------Ccccc-------------cHHHHHHHHH
Q psy17575 325 PPEPNGILHIGHAKAININFGYAA-----AHNGICFLRYDDT----------NPEKE-------------EEKFFTGIKD 376 (832)
Q Consensus 325 aPsPtG~LHIGharaaL~n~l~Ar-----~~gG~~iLRiDDT----------Dp~r~-------------~~e~~~~I~e 376 (832)
.|++..++||||+|++++-..++| .+.-.|+..|.|+ |++-. ...|.+.+.+
T Consensus 28 GpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~~~~~~f~~ 107 (481)
T PRK14534 28 GPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISRFFTEAFFD 107 (481)
T ss_pred CCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 599999999999999988766555 4556899999999 66421 3578889999
Q ss_pred HHHHcCCCcC-cccccchhHHHHHHHHHHHHHcCCcccc-----CCCHHHHhccCCCCCCCCCCChhHhHHHHHHHH--c
Q psy17575 377 MVQWLGYKPY-QITHSSDYFHQLYEWAVKLIKKGLAYVC-----HQKSDEMKGFNPLPSPWRERPVEENVKLFEAMK--N 448 (832)
Q Consensus 377 dL~WLGl~pd-~~~~qSd~~~~~ye~A~~Li~~G~AY~C-----~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~--~ 448 (832)
+++.||+.++ .....+++.+.+.+++.+|+++|+||.- ||... +..+ +.-..+.. ++|. .
T Consensus 108 d~~~Lni~~~~~~p~atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~----~~~Y-G~ls~~~l-------~~l~~~~ 175 (481)
T PRK14534 108 DCKKLNIVYPDKVLVASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC----FKSY-GQMAGINL-------NDFKDMS 175 (481)
T ss_pred HHHHcCCCCCceecCccchHHHHHHHHHHHHHCCCEEEECCeEEEeccc----ccch-hhhcCCCH-------HHHhhhc
Confidence 9999999866 3445789999999999999999999953 33221 1111 00111211 2332 2
Q ss_pred CcccCCCceEEEEecc-cCCCCCceEEEeee--CC-CCCCCCce-eEeeccceeeee-ecCCCCcceeee--ccccc-cc
Q psy17575 449 GLIDEGEATLRMKITL-EEGKQDPVAYRIKF--LP-HHRTGDSW-CIYPTYDYTHCL-CDSIEHITHSLC--TKEFQ-SR 519 (832)
Q Consensus 449 g~~~~g~~~lR~K~~~-~~~~~D~V~~Ri~~--~~-h~r~gd~~-~i~PtY~fA~~V-dD~l~gITHvlR--g~E~~-~~ 519 (832)
|. |+.++. .....|+++|+... .| ++.-...| .++|.+|..|++ .....|-|-.|. |.|++ ++
T Consensus 176 ~~--------~v~~~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrPgWHiECsam~~~~lg~~~DIH~GG~DliFPH 247 (481)
T PRK14534 176 VS--------RVEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKSTLDIHLGGVDHIGVH 247 (481)
T ss_pred cC--------cCCcccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCCcHHHHHHHHHHHHcCCcceEEecccccCCCc
Confidence 21 111111 11237999998542 11 11001123 369999999887 333456555666 88987 77
Q ss_pred chhHHHHHHhc-CCCCCCccc-ccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCC
Q psy17575 520 RSSYYWLCNAL-DIYCPVQWE-YGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGV 597 (832)
Q Consensus 520 ~~~~~~L~~aL-~~~~P~~~e-f~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~ 597 (832)
+.....+..++ |...+.+|- -++|.++|.|||||.++ ..|++.|.+.|+.|++++-|+....
T Consensus 248 Hene~Aqs~a~~g~~~~~~W~H~g~l~~~g~KMSKSlGN---------------~i~l~dll~~~~~~~alR~~lls~~- 311 (481)
T PRK14534 248 HINEIAIAECYLNKKWCDMFVHGEFLIMEYEKMSKSNNN---------------FITIKDLEDQGFSPLDFRYFCLTAH- 311 (481)
T ss_pred chhHHHHHhhhcCCCcceEEEEecEEEecCceecccCCC---------------cccHHHHHhcCCChhHHHHHHHhCC-
Confidence 77777777775 555555554 46788899999999864 3589999999999999998865544
Q ss_pred CCCCcccCHHHHHHHH
Q psy17575 598 TGAQAVVSPNMLEAVV 613 (832)
Q Consensus 598 s~~~~~~~~~~le~~~ 613 (832)
.++...|+++.|+++.
T Consensus 312 yr~~l~Fs~e~l~~a~ 327 (481)
T PRK14534 312 YRTQLKFTFNNLKACK 327 (481)
T ss_pred CCCCCCCCHHHHHHHH
Confidence 6778899999998875
No 40
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.45 E-value=1.8e-13 Score=153.95 Aligned_cols=260 Identities=12% Similarity=0.045 Sum_probs=178.6
Q ss_pred CCCCCCcCchHHHHHHHHHHHHHH-----hcCCEEEEeccCCCcccc-------------cHHHHHHHHHHHHHcCCC-c
Q psy17575 325 PPEPNGILHIGHAKAININFGYAA-----AHNGICFLRYDDTNPEKE-------------EEKFFTGIKDMVQWLGYK-P 385 (832)
Q Consensus 325 aPsPtG~LHIGharaaL~n~l~Ar-----~~gG~~iLRiDDTDp~r~-------------~~e~~~~I~edL~WLGl~-p 385 (832)
.|+|.+++||||+|+++.--.++| .+.-.|+.-|+|.|.+-. ...|.+.+.++++.||+. |
T Consensus 43 GpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~~Lni~~~ 122 (411)
T TIGR03447 43 GITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEALRVLPP 122 (411)
T ss_pred CCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 599999999999999988867766 456789999999987631 246888999999999976 6
Q ss_pred CcccccchhHHHHHHHHHHHHHcCCccccCC----CHH-HHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEE
Q psy17575 386 YQITHSSDYFHQLYEWAVKLIKKGLAYVCHQ----KSD-EMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRM 460 (832)
Q Consensus 386 d~~~~qSd~~~~~ye~A~~Li~~G~AY~C~C----s~e-el~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~ 460 (832)
+..+..|++.+.+.+++.+|+++|.||.-.- +.- ++.++..+ +.-..+.. ++|..+.... . .
T Consensus 123 d~~~RaTe~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~Y-G~Ls~~~~-------~~~~~~~~~~---~--~ 189 (411)
T TIGR03447 123 RDYIGAVESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEATEQF-GYESGYDR-------ATMLELFAER---G--G 189 (411)
T ss_pred CcccCCCCCHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccchhcc-ccccCCCH-------HHHHhhhccc---c--c
Confidence 7778899999999999999999999996331 000 22222111 11111222 2233210000 0 0
Q ss_pred Eec--ccCCCCCceEEEeeeCCCCCCCCce-eEeeccceeeee-ecCCCCcceeee--ccccc-ccchhHHHHHHhc-CC
Q psy17575 461 KIT--LEEGKQDPVAYRIKFLPHHRTGDSW-CIYPTYDYTHCL-CDSIEHITHSLC--TKEFQ-SRRSSYYWLCNAL-DI 532 (832)
Q Consensus 461 K~~--~~~~~~D~V~~Ri~~~~h~r~gd~~-~i~PtY~fA~~V-dD~l~gITHvlR--g~E~~-~~~~~~~~L~~aL-~~ 532 (832)
..+ ......|+++|+-....++.=...| .+.|.+|..|++ .....|-+--|+ |.|++ ++....+....++ |.
T Consensus 190 ~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~Dih~GG~DLifpHheneiaq~~A~~g~ 269 (411)
T TIGR03447 190 DPDRPGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNRLGAGFDIQGGGSDLIFPHHEFSAAHAEAATGV 269 (411)
T ss_pred CcccccCCCCcccceeCCCCCCCCCccCCCCCCCChhHHHHHHHHHHHcCCceecccCcccccccchHhHHHHHHHhcCC
Confidence 011 1112379999985432222111223 469999999887 666778888888 99998 6777777777775 43
Q ss_pred -CCCCccc-ccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHH
Q psy17575 533 -YCPVQWE-YGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLE 610 (832)
Q Consensus 533 -~~P~~~e-f~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le 610 (832)
+-+.+|- -++|.++|.||||+.++ ..++..+.+.|+.|++++-|++ .+-.+++..++.+.|+
T Consensus 270 ~~~~~~w~H~g~l~~~G~KMSKSlGN---------------~i~~~dl~~~g~dp~~lRl~ll-s~~Yr~pl~fs~e~l~ 333 (411)
T TIGR03447 270 RRMARHYVHAGMIGLDGEKMSKSLGN---------------LVFVSKLRAAGVDPAAIRLGLL-AGHYRQDRDWTDAVLA 333 (411)
T ss_pred CCcceEEEECCEECcCCCCccCcCCC---------------CCCHHHHHhcCCCcccEEEEEe-cCCCCCCCccCHHHHH
Confidence 3344554 47789999999999864 2478899889999999999886 3435667788888887
Q ss_pred HHH
Q psy17575 611 AVV 613 (832)
Q Consensus 611 ~~~ 613 (832)
...
T Consensus 334 ~a~ 336 (411)
T TIGR03447 334 EAE 336 (411)
T ss_pred HHH
Confidence 743
No 41
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.36 E-value=6.2e-12 Score=147.63 Aligned_cols=253 Identities=15% Similarity=0.162 Sum_probs=174.6
Q ss_pred eCCCCCCcCchHHHHHHHHHHHHHH-----hcCCEEEEeccCCCcccc-------------cHHHHHHHHHHHHHcCCCc
Q psy17575 324 FPPEPNGILHIGHAKAININFGYAA-----AHNGICFLRYDDTNPEKE-------------EEKFFTGIKDMVQWLGYKP 385 (832)
Q Consensus 324 FaPsPtG~LHIGharaaL~n~l~Ar-----~~gG~~iLRiDDTDp~r~-------------~~e~~~~I~edL~WLGl~p 385 (832)
-.|++.++.||||+|++++-..++| .+.-.|+.-|+|.|.+-. ...|.+.+.++++.||+.+
T Consensus 254 CGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d~~~LnI~~ 333 (699)
T PRK14535 254 CGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHEDADALGVLR 333 (699)
T ss_pred cCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3699999999999999998766665 455789999999997632 2578889999999999976
Q ss_pred C-cccccchhHHHHHHHHHHHHHcCCccc------cCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceE
Q psy17575 386 Y-QITHSSDYFHQLYEWAVKLIKKGLAYV------CHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATL 458 (832)
Q Consensus 386 d-~~~~qSd~~~~~ye~A~~Li~~G~AY~------C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~l 458 (832)
+ ..+..|++.+.+.+++.+|+++|.||. +||.. ++..+ +.-..+. .++|..|.
T Consensus 334 p~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~----~f~~Y-G~LS~~~-------~~~l~~g~-------- 393 (699)
T PRK14535 334 PDIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVR----EFAAY-GQLSGKS-------LDDLRAGE-------- 393 (699)
T ss_pred CcEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecc----ccccc-ccccCCC-------hHHhcCCC--------
Confidence 6 456788999999999999999999995 24432 22111 1111111 23444442
Q ss_pred EEEecc-cCCCCCceEEEeeeCCCCCCCCce-eEeeccceeeee-ecCCCCcceeee--ccccc-ccchhHHHHHHhc-C
Q psy17575 459 RMKITL-EEGKQDPVAYRIKFLPHHRTGDSW-CIYPTYDYTHCL-CDSIEHITHSLC--TKEFQ-SRRSSYYWLCNAL-D 531 (832)
Q Consensus 459 R~K~~~-~~~~~D~V~~Ri~~~~h~r~gd~~-~i~PtY~fA~~V-dD~l~gITHvlR--g~E~~-~~~~~~~~L~~aL-~ 531 (832)
|..++. .....|+++|+-....++-=..-| .+.|.||..|++ .....|-+--|. |.|++ ++.+..+...+++ |
T Consensus 394 rve~d~~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGWHIECSAMs~~~LG~~~DIHgGG~DLiFPHHENEiAQseA~~g 473 (699)
T PRK14535 394 RVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHHENEIAQSVGATG 473 (699)
T ss_pred ccccccccCCccccceeccCCCCCCCccCCCCCCCCchHHHHHHHHHHHcCCcceeECCccccCCCCCccHHHHHHHhhC
Confidence 111111 112379999985432221001113 369999999988 555667666666 88997 7888888888775 4
Q ss_pred CC----------------CCCcc-cccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHH
Q psy17575 532 IY----------------CPVQW-EYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCAR 594 (832)
Q Consensus 532 ~~----------------~P~~~-ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~ 594 (832)
.. -..+| +-+++.++|.||||+.++ ..|++.+.+. +.|++++-|++.
T Consensus 474 ~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN---------------~it~~dlLe~-ygpdalRl~lLs 537 (699)
T PRK14535 474 HTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGN---------------FFTIREVLKQ-YDPEVVRFFILR 537 (699)
T ss_pred CCcccccccccccccccccccEEEECCeEeeCCCccCCCCCC---------------cCCHHHHHHh-CCHHHHHHHHHc
Confidence 31 11123 247778899999999864 2478887774 999999999988
Q ss_pred hCCCCCCcccCHHHHHHHH
Q psy17575 595 MGVTGAQAVVSPNMLEAVV 613 (832)
Q Consensus 595 lG~s~~~~~~~~~~le~~~ 613 (832)
.. .+++..++.+.|+...
T Consensus 538 sh-YRspL~fS~e~Le~Ak 555 (699)
T PRK14535 538 AH-YRSPLNYSDAHLDDAK 555 (699)
T ss_pred CC-CCCCCCcCHHHHHHHH
Confidence 44 6677788888887754
No 42
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.31 E-value=7.1e-12 Score=149.01 Aligned_cols=266 Identities=14% Similarity=0.161 Sum_probs=171.5
Q ss_pred CCCCCCcCchHHHHHHHHHHHHHH------hcCCEEEEeccCCCcccc--------------cHHHHHHHHHHHHHcCCC
Q psy17575 325 PPEPNGILHIGHAKAININFGYAA------AHNGICFLRYDDTNPEKE--------------EEKFFTGIKDMVQWLGYK 384 (832)
Q Consensus 325 aPsPtG~LHIGharaaL~n~l~Ar------~~gG~~iLRiDDTDp~r~--------------~~e~~~~I~edL~WLGl~ 384 (832)
.|++.++.||||||+.++.-.++| .|.-.|+..|+|+|.+-. ...|.+.+.+|++.||+.
T Consensus 67 GPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~~d~~~Lni~ 146 (651)
T PTZ00399 67 GPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFFEDMKALNVR 146 (651)
T ss_pred CCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 489999999999999998766554 344789999999997621 246888999999999997
Q ss_pred c-CcccccchhHHHHHHHHHHHHHcCCccccCCCHH-HHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEe
Q psy17575 385 P-YQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSD-EMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKI 462 (832)
Q Consensus 385 p-d~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~e-el~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~ 462 (832)
+ +.++..|+|.+.+.++..+|+++|.||.-.-+.- ++.++......+...+++ +....+.|..|. |. +. ..
T Consensus 147 ~p~~~~r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~f~~~~~~Yg~L~p~-~~~~~~~~~~g~---~~--l~-~~ 219 (651)
T PTZ00399 147 PPDVITRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRKAGHVYPKLEPE-SVADEDRIAEGE---GA--LG-KV 219 (651)
T ss_pred CCccccCcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchhcccchhhHHhhChh-hcCCHHHHhccc---CC--cc-cc
Confidence 6 4677789999999999999999999996432111 222221000001111111 001112233332 10 00 00
Q ss_pred c-ccCCCCCceEEEeeeCCCCCCCCce-eEeeccceeeee-ecCCCCcceeee--ccccc-ccchhHHHHHHhc-CC-CC
Q psy17575 463 T-LEEGKQDPVAYRIKFLPHHRTGDSW-CIYPTYDYTHCL-CDSIEHITHSLC--TKEFQ-SRRSSYYWLCNAL-DI-YC 534 (832)
Q Consensus 463 ~-~~~~~~D~V~~Ri~~~~h~r~gd~~-~i~PtY~fA~~V-dD~l~gITHvlR--g~E~~-~~~~~~~~L~~aL-~~-~~ 534 (832)
+ ......|+++|.+....++.=..-| .+.|.||..|.+ .-.+.|-+--|+ |.|++ +++...+...+|+ |- .-
T Consensus 220 ~~~Kr~~~DFaLWk~~kpgep~W~SpwG~GrPGWHiECsam~~~~lg~~~DIh~gG~DL~FPHHeNEiAQseA~~~~~~~ 299 (651)
T PTZ00399 220 SGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPIDIHSGGIDLKFPHHDNELAQSEAYFDKHQW 299 (651)
T ss_pred CcCCCCCccHHhhCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHcCCcceeeccCCCCCCCcchhHHHHHHHhhCCCCC
Confidence 1 1112468888887643332100111 258999996655 444455565666 77876 7778888888886 32 23
Q ss_pred CCccc-ccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHH
Q psy17575 535 PVQWE-YGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVV 613 (832)
Q Consensus 535 P~~~e-f~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~ 613 (832)
+.+|. .+||.+.|.|||||.++ ..|+..+.+. |.|++|+-|++.. -..++..|+++.+....
T Consensus 300 v~y~~H~G~L~i~G~KMSKSLGN---------------fItp~dlLek-ygaDaLR~~lLs~-~~~~dldFS~e~l~~a~ 362 (651)
T PTZ00399 300 VNYFLHSGHLHIKGLKMSKSLKN---------------FITIRQALSK-YTARQIRLLFLLH-KWDKPMNYSDESMDEAI 362 (651)
T ss_pred CcEEEEEEEEEeccchhhhcCCC---------------cccHHHHHHH-cChHHHHHHHHhc-CCCCCCccCHHHHHHHH
Confidence 44555 38899999999999864 2377777776 9999999988855 34567788888876654
Q ss_pred H
Q psy17575 614 R 614 (832)
Q Consensus 614 r 614 (832)
.
T Consensus 363 ~ 363 (651)
T PTZ00399 363 E 363 (651)
T ss_pred H
Confidence 3
No 43
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.30 E-value=3.7e-12 Score=147.86 Aligned_cols=229 Identities=19% Similarity=0.158 Sum_probs=148.5
Q ss_pred CCceEEee-CCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEe---ccCCCcc-------------cccHHHHHHHHHH
Q psy17575 317 GGKVRTRF-PPEPNGILHIGHAKAININFGYAAA--HNGICFLR---YDDTNPE-------------KEEEKFFTGIKDM 377 (832)
Q Consensus 317 ~~~v~tRF-aPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLR---iDDTDp~-------------r~~~e~~~~I~ed 377 (832)
+++|+.-| +|+|||+|||||+|++++-..+||- ..|.-+.| ++|.+.. ...+.+.+.|.++
T Consensus 110 ~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (507)
T PRK01611 110 GKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKED 189 (507)
T ss_pred CCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888 8999999999999999998888875 45655555 4888743 3457888999999
Q ss_pred HHHcCCCcCcccccchhH--HHHHHHHHHHHHcCCcc-ccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCC
Q psy17575 378 VQWLGYKPYQITHSSDYF--HQLYEWAVKLIKKGLAY-VCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEG 454 (832)
Q Consensus 378 L~WLGl~pd~~~~qSd~~--~~~ye~A~~Li~~G~AY-~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g 454 (832)
++|||+.+|...+.|+.+ +.+.+..++|.++|.+| .- +|
T Consensus 190 l~~LgI~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~--------------------------------------~G 231 (507)
T PRK01611 190 LDRLGVHFDVWFSESELYYNGKVDEVVEDLKEKGLLYVES--------------------------------------DG 231 (507)
T ss_pred HHHcCCeeeEEeecCcchhcchHHHHHHHHHHCCCEEEee--------------------------------------CC
Confidence 999999998654445433 34566777899999998 20 01
Q ss_pred CceEEEEecccCCCCCceEEEeeeCCCCCCCCceeEeeccc---eeeeeecCCCCccee--eecccccccchhHHHHHHh
Q psy17575 455 EATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYD---YTHCLCDSIEHITHS--LCTKEFQSRRSSYYWLCNA 529 (832)
Q Consensus 455 ~~~lR~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~~i~PtY~---fA~~VdD~l~gITHv--lRg~E~~~~~~~~~~L~~a 529 (832)
..++++ +.-....|.|+.| ++| .|||. +|....-... .+++ |.|.|+..+.++...+.++
T Consensus 232 a~~~~~--~~~~~~~~~vl~k-------sdG-----~~~Y~t~Dia~~~~k~~~-~d~~i~V~g~~q~~hf~~~~~~~~~ 296 (507)
T PRK01611 232 ALWVRL--TEFGDDKDRVLIK-------SDG-----TYTYFTRDIAYHLYKFER-FDRVIYVVGADHHGHFKRLKAALKA 296 (507)
T ss_pred cEEEEc--hhhCCCCCeEEEE-------CCC-----CccchHHHHHHHHHHHhh-cCEEEEEECCChHHHHHHHHHHHHH
Confidence 111110 0000012566666 344 23443 4433322211 3455 7799999999998999999
Q ss_pred cCCCCCCcccccccC------CCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCH----------------HH
Q psy17575 530 LDIYCPVQWEYGRLN------VNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPP----------------EA 587 (832)
Q Consensus 530 L~~~~P~~~ef~hL~------l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~P----------------eA 587 (832)
||+..+..-.+.|.+ -+|.|||||+++. .++..+.+.++.. .|
T Consensus 297 lg~~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn~---------------i~l~dll~~a~g~~~~~~~~~~~a~~vgidA 361 (507)
T PRK01611 297 LGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGNV---------------VTLDDLLDEAVGRARELIEEKEIAEAVGIDA 361 (507)
T ss_pred cCCCcccceEEEEEEEEeeECCCCCcccCCCCce---------------eEHHHHHHHHHHHHHHHHHhhhhhhhhccce
Confidence 997643101144432 2578999999742 3677777765555 66
Q ss_pred HHHHHHHhCCCCCCcccCHHHHHHHHH
Q psy17575 588 INKFCARMGVTGAQAVVSPNMLEAVVR 614 (832)
Q Consensus 588 I~nfl~~lG~s~~~~~~~~~~le~~~r 614 (832)
|+-|+... -..++..|+|+.+.++..
T Consensus 362 iR~~~L~~-~~~~~~~Fd~~~~~~~~~ 387 (507)
T PRK01611 362 VRYFDLSR-SRDKDLDFDLDLALSFEG 387 (507)
T ss_pred eEehhhhc-CCCCCCccCHHHHHhhcC
Confidence 77655544 245567889988766653
No 44
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.30 E-value=1e-12 Score=127.65 Aligned_cols=133 Identities=20% Similarity=0.077 Sum_probs=101.5
Q ss_pred EEeeCCCCCCcCchHHHHHHHHHHHHHHhc-----CCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCcccccchhH
Q psy17575 321 RTRFPPEPNGILHIGHAKAININFGYAAAH-----NGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYF 395 (832)
Q Consensus 321 ~tRFaPsPtG~LHIGharaaL~n~l~Ar~~-----gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~~~~qSd~~ 395 (832)
++.++|+|||.+||||+|++++.+.+||.. +..++..+||.+..+..+.... |..|
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~---------~~~~---------- 61 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKK---------GENA---------- 61 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhc---------CCCH----------
Confidence 367899999999999999999998888886 8999999999998766554332 1111
Q ss_pred HHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCCCCCceEEE
Q psy17575 396 HQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYR 475 (832)
Q Consensus 396 ~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~~~D~V~~R 475 (832)
+++.. .+.+.|.+..+
T Consensus 62 -----------------------~~~~~--------------~~~~~~~~~~~--------------------------- 77 (143)
T cd00802 62 -----------------------KAFVE--------------RWIERIKEDVE--------------------------- 77 (143)
T ss_pred -----------------------HHHHH--------------HHHHHHHHHHH---------------------------
Confidence 11110 11111211110
Q ss_pred eeeCCCCCCCCceeEeeccceeeeeecCCCCc---ceeeecccccccchhHHHHHHhcCCC-CCCcccccccCCC-Cccc
Q psy17575 476 IKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHI---THSLCTKEFQSRRSSYYWLCNALDIY-CPVQWEYGRLNVN-YTVV 550 (832)
Q Consensus 476 i~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gI---THvlRg~E~~~~~~~~~~L~~aL~~~-~P~~~ef~hL~l~-gtkL 550 (832)
|++.+++++...++ ||+++|.|+..+.+.+.++.++++.. .|....|+++... |.||
T Consensus 78 ------------------y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p~~~~~~~l~~~~g~Km 139 (143)
T cd00802 78 ------------------YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAGGPARPFGLTFGRVMGADGTKM 139 (143)
T ss_pred ------------------HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCCCCCceEEEeCCeECCCCCcC
Confidence 88888888888888 99999999999999999999999875 6877789998874 5999
Q ss_pred chhH
Q psy17575 551 SKRK 554 (832)
Q Consensus 551 SKRk 554 (832)
|||+
T Consensus 140 Sks~ 143 (143)
T cd00802 140 SKSK 143 (143)
T ss_pred CCCC
Confidence 9984
No 45
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.25 E-value=6.4e-11 Score=137.16 Aligned_cols=277 Identities=16% Similarity=0.057 Sum_probs=156.4
Q ss_pred EEeeCCCCCCcCchHHHHHHHHHHHHHHh-----cCCEEEEeccCCCccc-------------ccHHHHHHHHHHHHHcC
Q psy17575 321 RTRFPPEPNGILHIGHAKAININFGYAAA-----HNGICFLRYDDTNPEK-------------EEEKFFTGIKDMVQWLG 382 (832)
Q Consensus 321 ~tRFaPsPtG~LHIGharaaL~n~l~Ar~-----~gG~~iLRiDDTDp~r-------------~~~e~~~~I~edL~WLG 382 (832)
+|==+|+|||.+||||+++.+....++|. +.-.++.-+||.+.+- -...|.+.|.++|+.||
T Consensus 5 i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~ 84 (511)
T PRK11893 5 ITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALN 84 (511)
T ss_pred EecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34447999999999999999988777765 3456777788886531 23568889999999999
Q ss_pred CCcCcccccch--hHHHHHHHHHHHHHcCCccc----------c--CCCHHHHhccCCCCCCCCCCChh-----Hh----
Q psy17575 383 YKPYQITHSSD--YFHQLYEWAVKLIKKGLAYV----------C--HQKSDEMKGFNPLPSPWRERPVE-----EN---- 439 (832)
Q Consensus 383 l~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~----------C--~Cs~eel~~~~~~~~~~R~r~~e-----e~---- 439 (832)
+.+|..+..++ +.+...+...+|.++|++|. | +++..++..-. +..+|+.+.- ++
T Consensus 85 I~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~--p~~~~~~~~~~~~~~~~~f~~ 162 (511)
T PRK11893 85 ISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIEDG--YRCPPTGAPVEWVEEESYFFR 162 (511)
T ss_pred CCcCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCCC--CCCCCCCCcceEEecCeEEEE
Confidence 99886544444 66777788889999999996 3 44445544211 1122322210 00
Q ss_pred HHHHHHHHcCcccCCCceE------E-EEecccCCCCCceEEE-eee--CCCCCCC----CceeE-eeccc------eee
Q psy17575 440 VKLFEAMKNGLIDEGEATL------R-MKITLEEGKQDPVAYR-IKF--LPHHRTG----DSWCI-YPTYD------YTH 498 (832)
Q Consensus 440 L~~f~~m~~g~~~~g~~~l------R-~K~~~~~~~~D~V~~R-i~~--~~h~r~g----d~~~i-~PtY~------fA~ 498 (832)
+..|.+.....+.++...+ + +..-+..+..|+.+.| -.. .|-|-.. +-|.= ...|. ..+
T Consensus 163 l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~~~~~~~~vWfda~~~y~s~~~~p~~~ 242 (511)
T PRK11893 163 LSKYQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALTNYLTALGYPDDE 242 (511)
T ss_pred cHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCccCCCCCCceEEEEecCcHHHHhHhcccccc
Confidence 1111111111111100000 0 0000011235666666 111 0111000 01310 00011 011
Q ss_pred eee--cC--CCCcceeeeccccccc-chhHHHHHHhcCCCCCCcc-cccccCCCCcccchhHHHHhhhcCccCCCCCcch
Q psy17575 499 CLC--DS--IEHITHSLCTKEFQSR-RSSYYWLCNALDIYCPVQW-EYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRL 572 (832)
Q Consensus 499 ~Vd--D~--l~gITHvlRg~E~~~~-~~~~~~L~~aL~~~~P~~~-ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~ 572 (832)
... +. ....+--+-|.|.+.. ...+..+..+++...|..| ..+++.++|.|||||+++.
T Consensus 243 ~~~~~~~~~~~~~D~~~~G~D~~~~h~~~~~a~~~a~~~~~p~~~~~~g~v~~~G~KMSKS~GN~--------------- 307 (511)
T PRK11893 243 ELLAELFNKYWPADVHLIGKDILRFHAVYWPAFLMAAGLPLPKRVFAHGFLTLDGEKMSKSLGNV--------------- 307 (511)
T ss_pred ccchhHHHhcCCCcceEecccccccchhHHHHHHHhCCCCCCCEEEeeccEEECCeeecccCCcE---------------
Confidence 100 10 0011224458888754 3334466667777777543 3688888999999999642
Q ss_pred hhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHH
Q psy17575 573 FTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVRE 615 (832)
Q Consensus 573 ~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~ 615 (832)
.++..+.+. +.+.|++-|++..+....+..|+++.+....+.
T Consensus 308 i~~~dll~~-~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~ 349 (511)
T PRK11893 308 IDPFDLVDE-YGVDAVRYFLLREIPFGQDGDFSREAFINRINA 349 (511)
T ss_pred EcHHHHHHH-cCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHH
Confidence 255666555 889999999999877778889999888654443
No 46
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.02 E-value=8.8e-10 Score=128.63 Aligned_cols=94 Identities=22% Similarity=0.274 Sum_probs=71.3
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCC---EEEEeccCCCcc-------------cccHHHHHHHHHHHHHc
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNG---ICFLRYDDTNPE-------------KEEEKFFTGIKDMVQWL 381 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG---~~iLRiDDTDp~-------------r~~~e~~~~I~edL~WL 381 (832)
++|--+|.|||.|||||+++.+.-..+||. ..| .|+.-+||.+.+ .-...+.+.|.+++++|
T Consensus 2 ~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~L 81 (530)
T TIGR00398 2 LITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWL 81 (530)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 467779999999999999999998888864 334 455556665432 23457889999999999
Q ss_pred CCCcCcccc--cchhHHHHHHHHHHHHHcCCccc
Q psy17575 382 GYKPYQITH--SSDYFHQLYEWAVKLIKKGLAYV 413 (832)
Q Consensus 382 Gl~pd~~~~--qSd~~~~~ye~A~~Li~~G~AY~ 413 (832)
|+.+|.... .+.+.+...+...+|.++|.+|.
T Consensus 82 gI~~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~ 115 (530)
T TIGR00398 82 NISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYE 115 (530)
T ss_pred CCCCCCCccCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 999885433 33366667778889999999983
No 47
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=98.86 E-value=5.9e-09 Score=114.53 Aligned_cols=93 Identities=22% Similarity=0.296 Sum_probs=69.1
Q ss_pred EEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCC---EEEEeccCCCcc-------------cccHHHHHHHHHHHHHcC
Q psy17575 321 RTRFPPEPNGILHIGHAKAININFGYAAA--HNG---ICFLRYDDTNPE-------------KEEEKFFTGIKDMVQWLG 382 (832)
Q Consensus 321 ~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG---~~iLRiDDTDp~-------------r~~~e~~~~I~edL~WLG 382 (832)
+|==+|.|||.+||||+++.++...+||. ..| .++.-+||.+.+ .-...+.+.|.++++.||
T Consensus 4 it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~Lg 83 (319)
T cd00814 4 ITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLN 83 (319)
T ss_pred EEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 33346999999999999999988887773 334 455667777543 234578889999999999
Q ss_pred CCcCcccccch--hHHHHHHHHHHHHHcCCccc
Q psy17575 383 YKPYQITHSSD--YFHQLYEWAVKLIKKGLAYV 413 (832)
Q Consensus 383 l~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~ 413 (832)
+.+|..+..++ +.+...+...+|.++|.+|.
T Consensus 84 I~~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~ 116 (319)
T cd00814 84 ISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYE 116 (319)
T ss_pred CcCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 99885443333 44556677789999999985
No 48
>PLN02224 methionine-tRNA ligase
Probab=98.81 E-value=4.4e-08 Score=116.29 Aligned_cols=280 Identities=16% Similarity=0.123 Sum_probs=146.8
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCC---EEEEeccCCCcc-------------cccHHHHHHHHHHHHHc
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNG---ICFLRYDDTNPE-------------KEEEKFFTGIKDMVQWL 381 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG---~~iLRiDDTDp~-------------r~~~e~~~~I~edL~WL 381 (832)
++|==+|.|||.+|||||++.++-..+||. ..| .|+-=+||-+.+ .-..++...+.+.+++|
T Consensus 72 ~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 151 (616)
T PLN02224 72 VLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKDL 151 (616)
T ss_pred EEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHHHc
Confidence 566667899999999999999998888775 233 455566666522 12346777888999999
Q ss_pred CCCcCcccccch--hHHHHHHHHHHHHHcCCcccc-----CC-------CHHHHhccCCCCCCCCCCCh----hHh----
Q psy17575 382 GYKPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC-----HQ-------KSDEMKGFNPLPSPWRERPV----EEN---- 439 (832)
Q Consensus 382 Gl~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C-----~C-------s~eel~~~~~~~~~~R~r~~----ee~---- 439 (832)
|+.+|..+..++ +....++...+|.++|..|.- +| +..++.. +..|++-..++ +++
T Consensus 152 ~I~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~~--~~~~~~~~~~~~~~~e~~~ff~ 229 (616)
T PLN02224 152 DIAYDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELLE--NNCCPVHQMPCVARKEDNYFFA 229 (616)
T ss_pred CCCCCcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHcC--CCCCCCCCCcceEEecceEEEE
Confidence 999996555444 444455566689999998853 23 2333321 11122211111 111
Q ss_pred HHHHHHHHcCcccCCCceEE----EEe--c-ccCCCCCceEEEee--e-CCCCCCCCceeEee------ccceeee--ee
Q psy17575 440 VKLFEAMKNGLIDEGEATLR----MKI--T-LEEGKQDPVAYRIK--F-LPHHRTGDSWCIYP------TYDYTHC--LC 501 (832)
Q Consensus 440 L~~f~~m~~g~~~~g~~~lR----~K~--~-~~~~~~D~V~~Ri~--~-~~h~r~gd~~~i~P------tY~fA~~--Vd 501 (832)
|..|++.....+.+.+..++ .+. . +.++..|.-+=|-. + -|-|-. ++-+||. .|--+.. .+
T Consensus 230 Ls~~~~~L~~~~~~~~~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~~-~~~viYVWfDAl~~Yls~~~~~~~ 308 (616)
T PLN02224 230 LSKYQKPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDD-DKQTIYVWFDALLGYISALTEDNK 308 (616)
T ss_pred hHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCCCccccCCCCCCceECCCC-CCcEEEEehhhHHHHHHHhccccc
Confidence 22232222222211110000 000 0 00112232222200 0 011111 1112211 1111000 00
Q ss_pred c----C--C---CCcceeeecccccccchh-HHHHHHhcCCCCCCccc-ccccCCCCcccchhHHHHhhhcCccCCCCCc
Q psy17575 502 D----S--I---EHITHSLCTKEFQSRRSS-YYWLCNALDIYCPVQWE-YGRLNVNYTVVSKRKIAKLIEENIVNDWDDP 570 (832)
Q Consensus 502 D----~--l---~gITHvlRg~E~~~~~~~-~~~L~~aL~~~~P~~~e-f~hL~l~gtkLSKRk~~~lv~~g~v~gwdDP 570 (832)
+ . . -..-|++ |.|.+..+.. .-.+..++|+..|..+- .+++.++|.||||++++. |
T Consensus 309 ~~~~~~~~~~~w~~~v~~i-GKDii~fH~i~wpa~l~~~g~~~P~~i~~~g~l~~eG~KMSKS~GN~------i------ 375 (616)
T PLN02224 309 QQNLETAVSFGWPASLHLI-GKDILRFHAVYWPAMLMSAGLELPKMVFGHGFLTKDGMKMGKSLGNT------L------ 375 (616)
T ss_pred ccccchhhccCCCcceEEE-eecccccHHHHHHHHHHHCCCCCCcEEEecccEecCCccccccCCcc------C------
Confidence 0 0 0 0122332 7887754332 22334456777775433 577889999999998642 1
Q ss_pred chhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHH-HHHHHhhcc
Q psy17575 571 RLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLE-AVVREVLND 619 (832)
Q Consensus 571 r~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le-~~~r~~l~~ 619 (832)
....+.++ |.+++++-||+..+.-..+..|+++.+. ..+.+.++.
T Consensus 376 ---~p~e~l~~-ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~ 421 (616)
T PLN02224 376 ---EPFELVQK-FGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANT 421 (616)
T ss_pred ---CHHHHHHH-cCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHH
Confidence 34455554 8999999999998766778899988753 445555543
No 49
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=98.80 E-value=1.5e-08 Score=110.74 Aligned_cols=249 Identities=18% Similarity=0.093 Sum_probs=127.9
Q ss_pred CCCCCCcCchHHHHHHHHHHHHHH-----hcCCEEEEeccCCCcccc--------------------------cHHHHHH
Q psy17575 325 PPEPNGILHIGHAKAININFGYAA-----AHNGICFLRYDDTNPEKE--------------------------EEKFFTG 373 (832)
Q Consensus 325 aPsPtG~LHIGharaaL~n~l~Ar-----~~gG~~iLRiDDTDp~r~--------------------------~~e~~~~ 373 (832)
+|+|||.+||||+++.++-..++| .+.-.++.-+||.+.+.+ ..++.+.
T Consensus 8 pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (312)
T cd00668 8 PPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVEEMSGE 87 (312)
T ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHH
Confidence 799999999999999776655554 344456666666542211 2367789
Q ss_pred HHHHHHHcCCCcC--cc--cccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCC-ChhHhHHHHHHHHc
Q psy17575 374 IKDMVQWLGYKPY--QI--THSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRER-PVEENVKLFEAMKN 448 (832)
Q Consensus 374 I~edL~WLGl~pd--~~--~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r-~~ee~L~~f~~m~~ 448 (832)
|.++++.||+..| .. +....+.+...+...+|.++|++|.-.-.. ..... -+-.. ...+ .+.+.+..
T Consensus 88 ~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v---~~~~~---~f~~~~~l~~--~~~~~~~~ 159 (312)
T cd00668 88 HKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV---RITEQ---WFFDMPKFKE--KLLKALRR 159 (312)
T ss_pred HHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee---Eeeee---EEEEcHHHHH--HHHHHHhc
Confidence 9999999999765 32 333445566667778999999999843211 00000 00000 0000 01111111
Q ss_pred CcccCCCceEEEEecccCCCCCceEEEeeeCCCCCCCCceeEee-----ccceeee--eec-----CCCCcceeeecccc
Q psy17575 449 GLIDEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYP-----TYDYTHC--LCD-----SIEHITHSLCTKEF 516 (832)
Q Consensus 449 g~~~~g~~~lR~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~~i~P-----tY~fA~~--VdD-----~l~gITHvlRg~E~ 516 (832)
+.... +..-+.-.++-....|+.+-|-..=.+++- .|+|+- .+-+++. ..+ ......--+=|.|+
T Consensus 160 ~~~~p-~~~~~~~~~~l~~~~d~~isR~~~WG~~~P--~~~i~~Wfds~~~~~~~~~~~~~~~~~~~~~~~di~~~G~D~ 236 (312)
T cd00668 160 GKIVP-EHVKNRMEAWLESLLDWAISRQRYWGTPLP--EDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWHLIGKDI 236 (312)
T ss_pred CCcCC-hHHHHHHHHHHhCCCCeEEeccCCCCCcCC--cccccchhhccHHHHHHcCCCccchhhhhcCCceEEEEecch
Confidence 11000 000000000000112555544221111111 122211 0001100 000 00022223337887
Q ss_pred c-ccchhHHHHHHhcCCC-CC-CcccccccCCCC-cccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHH
Q psy17575 517 Q-SRRSSYYWLCNALDIY-CP-VQWEYGRLNVNY-TVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFC 592 (832)
Q Consensus 517 ~-~~~~~~~~L~~aL~~~-~P-~~~ef~hL~l~g-tkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl 592 (832)
. ........+..+++.+ .| ..|-++++.+.| .|||||+++. .++..+.+. +.|+|++-|+
T Consensus 237 ~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~KmSKS~gn~---------------v~~~d~~~~-~~~da~R~~l 300 (312)
T cd00668 237 LRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGNV---------------IDPSDVVEK-YGADALRYYL 300 (312)
T ss_pred hhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCCccccccCCCc---------------CCHHHHHHH-cCcHHHHHHH
Confidence 7 5555555666677654 33 344567778877 9999999642 356777766 9999999999
Q ss_pred HHhCCCCC
Q psy17575 593 ARMGVTGA 600 (832)
Q Consensus 593 ~~lG~s~~ 600 (832)
+..+-...
T Consensus 301 ~~~~~~~~ 308 (312)
T cd00668 301 TSLAPYGD 308 (312)
T ss_pred HhcCCccC
Confidence 88764333
No 50
>KOG2007|consensus
Probab=98.79 E-value=2.9e-08 Score=112.04 Aligned_cols=243 Identities=13% Similarity=0.124 Sum_probs=162.9
Q ss_pred CCCCCCcCchHHHHHHHHH---HHHHH---hcCCEEEEeccCCCccc---cc---------------HHHHHHHHHHHHH
Q psy17575 325 PPEPNGILHIGHAKAININ---FGYAA---AHNGICFLRYDDTNPEK---EE---------------EKFFTGIKDMVQW 380 (832)
Q Consensus 325 aPsPtG~LHIGharaaL~n---~l~Ar---~~gG~~iLRiDDTDp~r---~~---------------~e~~~~I~edL~W 380 (832)
.|+....-||||||+++-- .-+-+ .|+-.|+..|.|+|.+. .. .-|++....|+..
T Consensus 62 GpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~~~F~~~e~eF~~DM~~ 141 (586)
T KOG2007|consen 62 GPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMGEKPLSLSERFCYYEEEFLQDMAA 141 (586)
T ss_pred cCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhccchhhHHHHHHHHHHHHHHHHHH
Confidence 5777788999999998843 22333 46789999999999752 21 1266889999999
Q ss_pred cCC-CcCcccccchhHHHHHHHHHHHHHcCCccccCCCHH-HHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceE
Q psy17575 381 LGY-KPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSD-EMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATL 458 (832)
Q Consensus 381 LGl-~pd~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~e-el~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~l 458 (832)
|.. .|+.+++-|+|.+++..+++++|++|.||+-.-|.. ++.++. ..|--.. ..+ +.+.. .+|..++
T Consensus 142 LnvLpPtv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~kf~---~~YgKL~--G~~---~~~~~---gEg~l~d 210 (586)
T KOG2007|consen 142 LNVLPPTVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDKFP---HSYGKLV--GQR---KNLQE---GEGVLSD 210 (586)
T ss_pred hCCCCCcccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEeccccc---chhhhhc--Cch---hhccc---CcCcccc
Confidence 995 566888999999999999999999999999855443 333332 1111100 000 11111 2333330
Q ss_pred EEEecccCCCCCceEEEeeeCCCCCCCCce-eEeeccceeeee-ecCCCCcceeee--ccccc-ccchhHHHHHHhcCCC
Q psy17575 459 RMKITLEEGKQDPVAYRIKFLPHHRTGDSW-CIYPTYDYTHCL-CDSIEHITHSLC--TKEFQ-SRRSSYYWLCNALDIY 533 (832)
Q Consensus 459 R~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~-~i~PtY~fA~~V-dD~l~gITHvlR--g~E~~-~~~~~~~~L~~aL~~~ 533 (832)
...-...|+.+|+-.....|.=...| .+-|.||..|.+ .-++.|-+--|. |.|+. +++...+..+.|-= .
T Consensus 211 ----s~KR~p~DFALWKAsK~gEP~WeSPWG~GRPGWHIECSaMas~~lG~~lDIH~GG~DL~FPHHeNEiAQ~eA~~-~ 285 (586)
T KOG2007|consen 211 ----SRKRSPADFALWKASKPGEPSWESPWGKGRPGWHIECSAMASAILGSQLDIHGGGIDLAFPHHENEIAQSEAAF-D 285 (586)
T ss_pred ----ccCCChhhhhhhhhcCCCCCCCCCCCCCCCCCceeeeHHHHHHhhccccceecCcccccCCCcccHHHHHHHHh-c
Confidence 00012368888886654333222233 358999999888 455677777777 67775 77777777777641 1
Q ss_pred CC----CcccccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCC
Q psy17575 534 CP----VQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTG 599 (832)
Q Consensus 534 ~P----~~~ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~ 599 (832)
.+ ...+-|||.+.|.||||+..+ +.||+.+.+ -|+|-+++-||+...|..
T Consensus 286 ~~~wVnYflHtGhL~i~g~KMSKSLkN---------------FiTIke~Lk-~~sp~qLRl~fl~~~wr~ 339 (586)
T KOG2007|consen 286 DSQWVNYFLHTGHLTINGEKMSKSLKN---------------FITIKEALK-KYSPRQLRLAFLLHQWRS 339 (586)
T ss_pred CCccceeEEEcCeeeeccchhhhhhcc---------------ceeHHHHHH-hcCHHHHHHHHHHHHhcC
Confidence 12 111348999999999999754 348888766 699999999999888753
No 51
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=98.65 E-value=1.4e-07 Score=113.04 Aligned_cols=95 Identities=21% Similarity=0.176 Sum_probs=69.1
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCC---EEEEeccCCCcc-------------cccHHHHHHHHHHHHHc
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNG---ICFLRYDDTNPE-------------KEEEKFFTGIKDMVQWL 381 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG---~~iLRiDDTDp~-------------r~~~e~~~~I~edL~WL 381 (832)
++|==.|.|||.+||||+++.+....+||. ..| .|+.=.||-+.+ .-...+.+.|.+++++|
T Consensus 7 ~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~l 86 (648)
T PRK12267 7 YITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKL 86 (648)
T ss_pred EEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 445556999999999999999998888774 334 444445554433 22457889999999999
Q ss_pred CCCcCcccccch--hHHHHHHHHHHHHHcCCcccc
Q psy17575 382 GYKPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC 414 (832)
Q Consensus 382 Gl~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C 414 (832)
|+.+|..++.++ +.....+...+|.++|++|.-
T Consensus 87 gI~~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~ 121 (648)
T PRK12267 87 DISYDKFIRTTDERHKKVVQKIFEKLYEQGDIYKG 121 (648)
T ss_pred CCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEEe
Confidence 999986555554 444445666789999999864
No 52
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=98.62 E-value=4.4e-07 Score=109.26 Aligned_cols=94 Identities=19% Similarity=0.140 Sum_probs=68.6
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCC----------------cccccHHHHHHHHHHHHHc
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTN----------------PEKEEEKFFTGIKDMVQWL 381 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTD----------------p~r~~~e~~~~I~edL~WL 381 (832)
++|==+|.|||.+||||+++.++-..+||. ..|.=++-+-.|| |..-...|.+.+.+++++|
T Consensus 5 ~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 84 (673)
T PRK00133 5 LVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFAGF 84 (673)
T ss_pred EEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 344446899999999999999999888874 3343233333333 2333467999999999999
Q ss_pred CCCcCcccccc--hhHHHHHHHHHHHHHcCCccc
Q psy17575 382 GYKPYQITHSS--DYFHQLYEWAVKLIKKGLAYV 413 (832)
Q Consensus 382 Gl~pd~~~~qS--d~~~~~ye~A~~Li~~G~AY~ 413 (832)
|+.+|..+..+ +|.....+...+|+++|.+|.
T Consensus 85 ~i~~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~ 118 (673)
T PRK00133 85 GISFDNYGSTHSEENRELAQEIYLKLKENGYIYE 118 (673)
T ss_pred CCCCCCCccCCcHHHHHHHHHHHHHHHHCCCEEE
Confidence 99988543333 467777788889999999885
No 53
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=98.61 E-value=1.5e-07 Score=110.65 Aligned_cols=95 Identities=22% Similarity=0.238 Sum_probs=70.1
Q ss_pred eEEeeCCCCCCcCchHHHHHH-HHHHHHHHh--cCC---EEEEeccCCCccc-------------ccHHHHHHHHHHHHH
Q psy17575 320 VRTRFPPEPNGILHIGHAKAI-NINFGYAAA--HNG---ICFLRYDDTNPEK-------------EEEKFFTGIKDMVQW 380 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaa-L~n~l~Ar~--~gG---~~iLRiDDTDp~r-------------~~~e~~~~I~edL~W 380 (832)
++|==+|.|||.|||||+++. +.-..+||. ..| .|+.=+||.+.+- -...+.+.+.++++.
T Consensus 6 ~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 85 (556)
T PRK12268 6 LITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFKK 85 (556)
T ss_pred EEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 445557999999999999998 766666653 234 4555555554331 135788999999999
Q ss_pred cCCCcCcccccc--hhHHHHHHHHHHHHHcCCcccc
Q psy17575 381 LGYKPYQITHSS--DYFHQLYEWAVKLIKKGLAYVC 414 (832)
Q Consensus 381 LGl~pd~~~~qS--d~~~~~ye~A~~Li~~G~AY~C 414 (832)
||+.+|..+..+ ++.+...+...+|.++|.+|.-
T Consensus 86 l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~ 121 (556)
T PRK12268 86 LGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYKK 121 (556)
T ss_pred cCCcCCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEe
Confidence 999998655555 6777777888899999999953
No 54
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=98.57 E-value=1.8e-07 Score=102.85 Aligned_cols=91 Identities=24% Similarity=0.295 Sum_probs=63.8
Q ss_pred eeCCCCCCcCchHHHHHHHHHHHHHHh-----cCCEEEEeccCCCcccc-------------cHHHHHHHHHHHHHcCCC
Q psy17575 323 RFPPEPNGILHIGHAKAININFGYAAA-----HNGICFLRYDDTNPEKE-------------EEKFFTGIKDMVQWLGYK 384 (832)
Q Consensus 323 RFaPsPtG~LHIGharaaL~n~l~Ar~-----~gG~~iLRiDDTDp~r~-------------~~e~~~~I~edL~WLGl~ 384 (832)
==+|.|||.+||||+++.+.-..+||. +.-.++.-+||.+.+-+ ...+.+.+.++++.||+.
T Consensus 6 ~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~ 85 (314)
T cd00812 6 VMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFS 85 (314)
T ss_pred cCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccc
Confidence 336999999999999999888776653 34457777888864432 367889999999999998
Q ss_pred cC--cccc-cchhHHH-HHHHHHHHHHcCCccc
Q psy17575 385 PY--QITH-SSDYFHQ-LYEWAVKLIKKGLAYV 413 (832)
Q Consensus 385 pd--~~~~-qSd~~~~-~ye~A~~Li~~G~AY~ 413 (832)
+| .... .++.+.. ......+|.++|.+|.
T Consensus 86 ~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~ 118 (314)
T cd00812 86 YDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYK 118 (314)
T ss_pred eecccccccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 76 2211 2222222 2223348999999984
No 55
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=98.57 E-value=2.9e-07 Score=107.52 Aligned_cols=238 Identities=18% Similarity=0.174 Sum_probs=142.3
Q ss_pred ceEEeeCCCCCCcCchHHHHHHHHHHHHHHh-----cCCEEEEeccCCCccccc--------------------------
Q psy17575 319 KVRTRFPPEPNGILHIGHAKAININFGYAAA-----HNGICFLRYDDTNPEKEE-------------------------- 367 (832)
Q Consensus 319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~-----~gG~~iLRiDDTDp~r~~-------------------------- 367 (832)
.++.-=+.+|||.+||||++.++..+.+||. +.-.|+.=-||-|+-|..
T Consensus 24 ~~~~~~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~G 103 (510)
T PRK00750 24 PVVVETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPFG 103 (510)
T ss_pred cEEEEeCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCCC
Confidence 3777778899999999999999988777764 345677777999863322
Q ss_pred ------HHHHHHHHHHHHHcCCCcCcc----cccchhHHHHHHHHHH-HHHcCCccccCCCHHHHhccCC-----CCCCC
Q psy17575 368 ------EKFFTGIKDMVQWLGYKPYQI----THSSDYFHQLYEWAVK-LIKKGLAYVCHQKSDEMKGFNP-----LPSPW 431 (832)
Q Consensus 368 ------~e~~~~I~edL~WLGl~pd~~----~~qSd~~~~~ye~A~~-Li~~G~AY~C~Cs~eel~~~~~-----~~~~~ 431 (832)
..|...+.+.++.+|+.++.. .|+|..|. +.... |-+.+... +-|....+ ..+|.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~gi~~d~~~~t~~y~~g~~~---~~i~~~l~~~~~i~------~il~~~~~~~~~~~~~P~ 174 (510)
T PRK00750 104 CHESYAEHFNAPLREFLDRFGIEYEFISATECYKSGRYD---EAILTALENRDEIM------EILLPYLGEERQATYSPF 174 (510)
T ss_pred CchHHHHHHHHHHHHHHHHcCCceEEEehhhhhccCchH---HHHHHHHHhHHHHH------HHHHHhcCCccCCCeeee
Confidence 345667788899999988732 22333332 22222 22222111 11111111 01111
Q ss_pred CCCChhHhHHHHHHHHcCcccCCCceEEE-EecccCCCCCceEEEeeeCCC-----CCCCC-c--eeE-eeccceeeeee
Q psy17575 432 RERPVEENVKLFEAMKNGLIDEGEATLRM-KITLEEGKQDPVAYRIKFLPH-----HRTGD-S--WCI-YPTYDYTHCLC 501 (832)
Q Consensus 432 R~r~~ee~L~~f~~m~~g~~~~g~~~lR~-K~~~~~~~~D~V~~Ri~~~~h-----~r~gd-~--~~i-~PtY~fA~~Vd 501 (832)
.++.+ ..|+.. +..+ ..+.. ..-|.|++. ..| .+.|. + |.+ ||+ -
T Consensus 175 --~pic~--------~cg~~~----~~~~~~~d~~---~~~v~y~~~-cG~~~~~~~~~g~~KL~Wr~dW~~-------r 229 (510)
T PRK00750 175 --LPICP--------KCGKVL----TTPVISYDAE---AGTVTYDCE-CGHEGEVPVTGGHGKLQWKVDWPM-------R 229 (510)
T ss_pred --eeeCC--------CCCccc----eEEEEEEeCC---CCEEEEEcC-CCCEEEEecCCCCcccCCCCCcHH-------H
Confidence 01111 022221 1111 22211 112445432 111 12221 1 544 443 2
Q ss_pred cCCCCcceeeecccccc-cchhHHHHHH-hcCCCCCCcccccccCCC-CcccchhHHHHhhhcCccCCCCCcchhhHHHH
Q psy17575 502 DSIEHITHSLCTKEFQS-RRSSYYWLCN-ALDIYCPVQWEYGRLNVN-YTVVSKRKIAKLIEENIVNDWDDPRLFTLTAL 578 (832)
Q Consensus 502 D~l~gITHvlRg~E~~~-~~~~~~~L~~-aL~~~~P~~~ef~hL~l~-gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~l 578 (832)
-+..||+..+.|.||.. +...+..+++ .||...|....|+.+.+. |.|||||+++. .++..+
T Consensus 230 W~~l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~G~KMSKSkGN~---------------i~~~d~ 294 (510)
T PRK00750 230 WAALGVDFEPFGKDHASASYDTSKKIAREILGGEPPEPFVYELFLDKKGEKISKSKGNV---------------ITIEDW 294 (510)
T ss_pred HHHcCCCEEeeCcccCcchHHHHHHHHHHHcCCCCCeeeeeeeEEeCCCCcccccCCCc---------------cCHHHH
Confidence 24689999999999999 9999999999 999999988889888887 99999999642 256666
Q ss_pred HHcCCCHHHHHHHHHHhCCCCCCcccCH
Q psy17575 579 RRRGFPPEAINKFCARMGVTGAQAVVSP 606 (832)
Q Consensus 579 rrrG~~PeAI~nfl~~lG~s~~~~~~~~ 606 (832)
.+. +.|++++-|+..-.-...+..|++
T Consensus 295 l~~-~~pd~lR~~l~~~~~~~~~~~f~~ 321 (510)
T PRK00750 295 LEY-APPESLRLFMFARPKPAKRLDFDV 321 (510)
T ss_pred HHH-CCHHHHHHHHHhCCCCCCCCcccH
Confidence 554 899999988876544444555654
No 56
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.50 E-value=4.9e-06 Score=93.05 Aligned_cols=243 Identities=20% Similarity=0.192 Sum_probs=144.0
Q ss_pred CceEEeeCCCCCCcCchHHHHHHHHHHHHHHh-----cCCEEEEeccCCCcccc--------------------------
Q psy17575 318 GKVRTRFPPEPNGILHIGHAKAININFGYAAA-----HNGICFLRYDDTNPEKE-------------------------- 366 (832)
Q Consensus 318 ~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~-----~gG~~iLRiDDTDp~r~-------------------------- 366 (832)
.+++.-=+++|||.+||||++..+....+||. +.-.|+.=.||-|+-|.
T Consensus 19 ~~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~ 98 (353)
T cd00674 19 EKYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGC 98 (353)
T ss_pred CeEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCC
Confidence 34666668899999999999998887766654 45678888888876333
Q ss_pred ----cHHHHHHHHHHHHHcCCCcCcccccchhHHHHH-HHHH-HHHHcCCccccCCCHHHHhccCCC-----CCCCCCCC
Q psy17575 367 ----EEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLY-EWAV-KLIKKGLAYVCHQKSDEMKGFNPL-----PSPWRERP 435 (832)
Q Consensus 367 ----~~e~~~~I~edL~WLGl~pd~~~~qSd~~~~~y-e~A~-~Li~~G~AY~C~Cs~eel~~~~~~-----~~~~R~r~ 435 (832)
...+...+.+.|+.||+.++.++....|-.-.| +... .|-+.+.... -|....+. .+|. .+
T Consensus 99 ~~~~~d~~~~~f~~~l~~lgi~~d~~~~T~~y~~g~~~~~i~~~L~~~~~I~~------i~~~~~~~~~~~~~~P~--~p 170 (353)
T cd00674 99 CESYAEHFERPFEESLEKLGIEVEFISQSQMYKSGLYDENILIALEKRDEIMA------ILNEYRGRELQETWYPF--MP 170 (353)
T ss_pred CHHHHHHHHHHHHHHHHHcCCeeeeeecCCchhhchHHHHHHHHHHHCChHHH------HHHHhcCCccCCCceee--ee
Confidence 235667788899999999874332222222222 2333 3555544321 12221110 0111 01
Q ss_pred hhHhHHHHHHHHcCcccCCCceEEEEecccCCCCCceEEEeeeCCC-----CCCCC-c--eeE-eeccceeeeeecCCCC
Q psy17575 436 VEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLPH-----HRTGD-S--WCI-YPTYDYTHCLCDSIEH 506 (832)
Q Consensus 436 ~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~~~D~V~~Ri~~~~h-----~r~gd-~--~~i-~PtY~fA~~VdD~l~g 506 (832)
+.++ .|+.. ..+ ...+.+ ..-|.|++. .-| .+.|. + |.+ ||+ .-+..|
T Consensus 171 ~c~~--------cg~~~--~~v--~~~d~~---~~~v~y~c~-cG~~g~~~~~~g~~KL~Wr~dW~~-------rW~~l~ 227 (353)
T cd00674 171 YCEK--------CGKDT--TTV--EAYDAK---AGTVTYKCE-CGHEETVDIRTGRGKLTWRVDWPM-------RWAILG 227 (353)
T ss_pred ecCC--------cCcce--eEE--EEEeCC---CCeEEEEcC-CCCEEEEeecCCCcccCCCCCchh-------hhhhcC
Confidence 1110 12110 001 011111 123556542 111 11221 1 544 443 234678
Q ss_pred cceeeeccccccc---chhHHHHHH-hcCCCCCCcccccccCCCCc-ccchhHHHHhhhcCccCCCCCcchhhHHHHHHc
Q psy17575 507 ITHSLCTKEFQSR---RSSYYWLCN-ALDIYCPVQWEYGRLNVNYT-VVSKRKIAKLIEENIVNDWDDPRLFTLTALRRR 581 (832)
Q Consensus 507 ITHvlRg~E~~~~---~~~~~~L~~-aL~~~~P~~~ef~hL~l~gt-kLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrr 581 (832)
|+--+=|.||..+ ...-..+++ .||...|....|+.+.+.+. |||||+++- .++..+.+.
T Consensus 228 Vd~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~P~~~~ye~V~l~gg~KMSKSkGnv---------------I~~~dll~~ 292 (353)
T cd00674 228 VDFEPFGKDHASAGGSYDTGKEIAREIFGGEPPVPVMYEFIGLKGGGKMSSSKGNV---------------ITPSDWLEV 292 (353)
T ss_pred CCEEeeCccccccccHHHHHHHHHHHHhCCCCCeEEEeeeEEeCCCCccCCCCCCc---------------CCHHHHHHH
Confidence 9999999999877 666677887 99999898777888888765 999999642 367777776
Q ss_pred CCCHHHHHHHHHHhCCCCCCcccCHH
Q psy17575 582 GFPPEAINKFCARMGVTGAQAVVSPN 607 (832)
Q Consensus 582 G~~PeAI~nfl~~lG~s~~~~~~~~~ 607 (832)
+.|++|+-|++...-...+..|+++
T Consensus 293 -~~~dalR~~~l~~~~~~~~i~Fd~~ 317 (353)
T cd00674 293 -APPEVLRYLYARRKNPEKHIGFDLD 317 (353)
T ss_pred -hChHHHHHHHHhCCCCCCCCCcChh
Confidence 8899999998887633345566654
No 57
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=98.49 E-value=4.1e-07 Score=98.71 Aligned_cols=171 Identities=16% Similarity=0.111 Sum_probs=115.5
Q ss_pred CCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC-------CcccccHHHHHHHHHHHHHcCCCcCc--ccccchhHHH
Q psy17575 327 EPNGILHIGHAKAININFGYAAAHNGICFLRYDDT-------NPEKEEEKFFTGIKDMVQWLGYKPYQ--ITHSSDYFHQ 397 (832)
Q Consensus 327 sPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-------Dp~r~~~e~~~~I~edL~WLGl~pd~--~~~qSd~~~~ 397 (832)
.|||.|||||...|+.+|...+..|..+++.|-|. +..++..++...+..++.++|++|++ +..||++. .
T Consensus 7 ~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~qS~~~-~ 85 (280)
T cd00806 7 QPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQSDVP-E 85 (280)
T ss_pred CCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEEcCCcH-H
Confidence 48899999999999999999999999999999998 45567778889999999999999973 57799876 4
Q ss_pred HHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCCCCCceEEEee
Q psy17575 398 LYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIK 477 (832)
Q Consensus 398 ~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~~~D~V~~Ri~ 477 (832)
+++.+-. +.|.|+..++++.-. +++ +..+ + .+.+
T Consensus 86 ~~~l~~~-------l~~~~~~~~l~r~~~----fk~------------~~~~----~----------~~~~--------- 119 (280)
T cd00806 86 HYELAWL-------LSCVVTFGELERMTG----FKD------------KSAQ----G----------ESVN--------- 119 (280)
T ss_pred HHHHHHH-------HhCcCCHHHHHhccc----hhh------------hhcc----C----------CCCc---------
Confidence 5655432 669999999875311 111 1000 0 0000
Q ss_pred eCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcC------CCCCCcccc--ccc-CCCC-
Q psy17575 478 FLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALD------IYCPVQWEY--GRL-NVNY- 547 (832)
Q Consensus 478 ~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~------~~~P~~~ef--~hL-~l~g- 547 (832)
.| ...||.-+= .|=.+.+.++|..|.|-..+-..-.-+.+.++ +..|....= ..+ .+.|
T Consensus 120 ------~g--~~~YP~lqa---aDil~~~~~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~~l~g~ 188 (280)
T cd00806 120 ------IG--LLTYPVLQA---ADILLYKACLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLPGLQGP 188 (280)
T ss_pred ------ch--hhcchHHHH---hhhhhccCCEEeeccccHHHHHHHHHHHHHhccccccccCCCeeeccCCCccccCCCC
Confidence 00 111333221 12123345899999998877777777888888 566642221 223 3555
Q ss_pred -cccchhHH
Q psy17575 548 -TVVSKRKI 555 (832)
Q Consensus 548 -tkLSKRk~ 555 (832)
+||||+..
T Consensus 189 ~~KMSKS~~ 197 (280)
T cd00806 189 SKKMSKSDP 197 (280)
T ss_pred CCcccCCCC
Confidence 59999975
No 58
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.45 E-value=5.8e-07 Score=93.92 Aligned_cols=41 Identities=17% Similarity=0.096 Sum_probs=34.5
Q ss_pred eCCCCCCcCchHHHHHHHHHHHHHHh-----cCCEEEEeccCCCcc
Q psy17575 324 FPPEPNGILHIGHAKAININFGYAAA-----HNGICFLRYDDTNPE 364 (832)
Q Consensus 324 FaPsPtG~LHIGharaaL~n~l~Ar~-----~gG~~iLRiDDTDp~ 364 (832)
..|.|+|.+||||+|+.++...+||. +.-.|+.-+||.+.+
T Consensus 26 ~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~k 71 (213)
T cd00672 26 CGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDK 71 (213)
T ss_pred eCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCH
Confidence 46999999999999999999887763 446788999999864
No 59
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=98.21 E-value=3.2e-06 Score=95.84 Aligned_cols=99 Identities=20% Similarity=0.156 Sum_probs=64.2
Q ss_pred cCCCCcceeeeccccccc-chhHHHHHHhcCCCCCCccc-ccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHH
Q psy17575 502 DSIEHITHSLCTKEFQSR-RSSYYWLCNALDIYCPVQWE-YGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALR 579 (832)
Q Consensus 502 D~l~gITHvlRg~E~~~~-~~~~~~L~~aL~~~~P~~~e-f~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lr 579 (832)
|....+.|+| |.|.+.. .-.+-.++.++|++.|...- -+++.++|.||||+.+. .| ....+.
T Consensus 279 ~~~~~~v~~i-GkDi~~fH~i~~pa~l~a~~~~lP~~i~~~~~~~~~g~K~SkS~gn------~i---------~~~~~~ 342 (391)
T PF09334_consen 279 DSDVEIVHFI-GKDIIRFHAIYWPAMLLAAGLPLPRRIVVHGFLTLDGEKMSKSRGN------VI---------WPDDLL 342 (391)
T ss_dssp T--SEEEEEE-EGGGHHHHHTHHHHHHHHCTB---SEEEEE--EEETTCCEETTTTE------SS---------BHHHHH
T ss_pred cCCceEEEEE-ccchhHHHHHHhHHHHhcccCCCCCEEEeeeeEEECCeeccccCCc------cc---------CHHHHH
Confidence 3334456665 8887643 33344666778988885432 46788999999999853 22 355566
Q ss_pred HcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhh
Q psy17575 580 RRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVL 617 (832)
Q Consensus 580 rrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l 617 (832)
++ +.+++++-||+..|.-..++.|+++.+...+...|
T Consensus 343 ~~-~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L 379 (391)
T PF09334_consen 343 EE-YGADALRYYLAREGPEGQDSDFSWEDFIERVNNEL 379 (391)
T ss_dssp HH-H-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCC
T ss_pred Hh-CChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 65 89999999999999888999999999877666554
No 60
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=1.5e-05 Score=93.74 Aligned_cols=94 Identities=23% Similarity=0.241 Sum_probs=68.5
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCc----------------ccccHHHHHHHHHHHHHc
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNP----------------EKEEEKFFTGIKDMVQWL 381 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp----------------~r~~~e~~~~I~edL~WL 381 (832)
++|==-|-|||.+||||+.+.|....+||- ..|.=.+=+--||. +.-..++.+.+.++.+||
T Consensus 8 ~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~l 87 (558)
T COG0143 8 LVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKAL 87 (558)
T ss_pred EEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 555556999999999999999999999975 44654554555542 222456778899999999
Q ss_pred CCCcCcc--cccchhHHHHHHHHHHHHHcCCccc
Q psy17575 382 GYKPYQI--THSSDYFHQLYEWAVKLIKKGLAYV 413 (832)
Q Consensus 382 Gl~pd~~--~~qSd~~~~~ye~A~~Li~~G~AY~ 413 (832)
++..|.- +..+.+...-.+.-.+|.++|..|.
T Consensus 88 ~IsfD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~ 121 (558)
T COG0143 88 NISFDNFIRTTSPEHKELVQEFFLKLYENGDIYL 121 (558)
T ss_pred CCcccccccCCCHHHHHHHHHHHHHHHHCCCEec
Confidence 9999843 4444444445566678999998874
No 61
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=98.20 E-value=1.3e-06 Score=103.18 Aligned_cols=51 Identities=14% Similarity=0.072 Sum_probs=35.5
Q ss_pred Ccceeee--cccccccchhHHHHHHhcCCCCCCc---ccccccCCCCcccchhHHH
Q psy17575 506 HITHSLC--TKEFQSRRSSYYWLCNALDIYCPVQ---WEYGRLNVNYTVVSKRKIA 556 (832)
Q Consensus 506 gITHvlR--g~E~~~~~~~~~~L~~aL~~~~P~~---~ef~hL~l~gtkLSKRk~~ 556 (832)
+.+++|= |.|+..+-++-....++||+..+.. ..|+.+.++|.+||+|++.
T Consensus 323 ~~d~~IyV~g~dq~~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~~~g~kmStR~G~ 378 (562)
T PRK12451 323 GFDKALYVVGPEQSLHFNQFFTVLKKLGYTWVDGMEHVPFGLILKDGKKMSTRKGR 378 (562)
T ss_pred CCCEEEEEeCCcHHHHHHHHHHHHHHcCCCcccCeEEEeeeeEecCCCCCcCCCCC
Confidence 4555554 7777766666667788899764321 2367777888999999964
No 62
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=98.14 E-value=2.2e-06 Score=101.34 Aligned_cols=66 Identities=12% Similarity=0.080 Sum_probs=39.7
Q ss_pred eeccceeeeeecCCCCcceeee--cccccccchhHHHHHHhcCCCCCCccc-ccccCCCCcccchhHHH
Q psy17575 491 YPTYDYTHCLCDSIEHITHSLC--TKEFQSRRSSYYWLCNALDIYCPVQWE-YGRLNVNYTVVSKRKIA 556 (832)
Q Consensus 491 ~PtY~fA~~VdD~l~gITHvlR--g~E~~~~~~~~~~L~~aL~~~~P~~~e-f~hL~l~gtkLSKRk~~ 556 (832)
|.|=|+|....=...+.+++|= |.||..+-.+-.....+||++.|.... .++--+.+.+||||++.
T Consensus 311 Y~t~DiA~~~~k~~~~~d~iI~V~g~~q~~h~~~v~~~l~~lG~~~~~~l~h~~~~~V~~~kmSkr~Gn 379 (566)
T TIGR00456 311 YLTRDIAYHLDKLERGFDKMIYVWGSDHHLHIAQFFAILEKLGFYKKKELIHLNFGMVPLGSMKTRRGN 379 (566)
T ss_pred echhhHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHHHHcCCCCCCceEEEEEEEEECCCCCccCCc
Confidence 4444444333211225666654 888877777767788899987775322 22222356899999864
No 63
>PLN02610 probable methionyl-tRNA synthetase
Probab=98.13 E-value=3.1e-05 Score=95.02 Aligned_cols=89 Identities=12% Similarity=-0.078 Sum_probs=61.3
Q ss_pred ceeeecccccccchh-HHHHHHhcCCC--CCCccc-ccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCC
Q psy17575 508 THSLCTKEFQSRRSS-YYWLCNALDIY--CPVQWE-YGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGF 583 (832)
Q Consensus 508 THvlRg~E~~~~~~~-~~~L~~aL~~~--~P~~~e-f~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~ 583 (832)
.|+| |.|-+.-+.. .-.++-++|.. .|...- -+++.++|.||||++++ .| ....+.+++|
T Consensus 304 ~hfi-GKDi~~fH~i~wPa~L~a~g~~~~~p~~i~~~g~l~~eG~KMSKS~GN------vV---------~p~~~i~~~y 367 (801)
T PLN02610 304 YQFM-GKDNVPFHTVMFPSTLLGTGENWTMMKTISVTEYLNYEGGKFSKSKGV------GV---------FGNDAKDTNI 367 (801)
T ss_pred EEEE-eeecchhHHHHHHHHHHhCCCCcCCCCEEEeccCEecCCceecCcCCc------cc---------CHHHHHhccC
Confidence 4554 7776543332 23455566743 564322 46688999999999864 12 3456677789
Q ss_pred CHHHHHHHHHHhCCCCCCcccCHHHHHHH
Q psy17575 584 PPEAINKFCARMGVTGAQAVVSPNMLEAV 612 (832)
Q Consensus 584 ~PeAI~nfl~~lG~s~~~~~~~~~~le~~ 612 (832)
.++++|-||+..+--..+..|+|+.|...
T Consensus 368 g~D~lRyyLl~~~p~~~D~dFs~~~f~~~ 396 (801)
T PLN02610 368 PVEVWRYYLLTNRPEVSDTLFTWADLQAK 396 (801)
T ss_pred CchHhHHHhhhcCCCCCCCcCCHHHHHHH
Confidence 99999999999887778999999766443
No 64
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=98.06 E-value=5.3e-06 Score=92.23 Aligned_cols=91 Identities=23% Similarity=0.239 Sum_probs=67.2
Q ss_pred CCCCCCcCchHHHHHHHHHHHHHHh--cCC---EEEEeccC----CCcccc--------------------------cHH
Q psy17575 325 PPEPNGILHIGHAKAININFGYAAA--HNG---ICFLRYDD----TNPEKE--------------------------EEK 369 (832)
Q Consensus 325 aPsPtG~LHIGharaaL~n~l~Ar~--~gG---~~iLRiDD----TDp~r~--------------------------~~e 369 (832)
||.|||.+|||||++.++...++|. ..| .++.-+|| ++.+.+ ..+
T Consensus 9 pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (338)
T cd00818 9 PPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAKCREFALR 88 (338)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHHHHHHHHH
Confidence 7999999999999999888777764 233 45555666 332111 235
Q ss_pred HHHHHHHHHHHcCC--CcCc--ccccchhHHHHHHHHHHHHHcCCccccC
Q psy17575 370 FFTGIKDMVQWLGY--KPYQ--ITHSSDYFHQLYEWAVKLIKKGLAYVCH 415 (832)
Q Consensus 370 ~~~~I~edL~WLGl--~pd~--~~~qSd~~~~~ye~A~~Li~~G~AY~C~ 415 (832)
+.+.+.++++.||+ .|+. .+...++.+...+...+|+++|++|.-.
T Consensus 89 ~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~ 138 (338)
T cd00818 89 YVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGY 138 (338)
T ss_pred HHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccC
Confidence 67899999999999 6653 4555677777888888999999999753
No 65
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=98.02 E-value=8.3e-05 Score=87.11 Aligned_cols=237 Identities=16% Similarity=0.178 Sum_probs=133.5
Q ss_pred CceEEeeCCCCCCcCchHHHHHHHHHHHHHHh-----cCCEEEEeccCCCcccccH------------------------
Q psy17575 318 GKVRTRFPPEPNGILHIGHAKAININFGYAAA-----HNGICFLRYDDTNPEKEEE------------------------ 368 (832)
Q Consensus 318 ~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~-----~gG~~iLRiDDTDp~r~~~------------------------ 368 (832)
+.++.-=+=+|||.+||||++..+....+||. +.-+||.=-||-||-|..+
T Consensus 18 ~~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~ 97 (515)
T TIGR00467 18 NLYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGC 97 (515)
T ss_pred CeEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCC
Confidence 35666667779999999999999888777764 4567888888887766432
Q ss_pred ------HHHHHHHHHHHHcCCCcCc----ccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhcc----CC-----CCC
Q psy17575 369 ------KFFTGIKDMVQWLGYKPYQ----ITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGF----NP-----LPS 429 (832)
Q Consensus 369 ------e~~~~I~edL~WLGl~pd~----~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~----~~-----~~~ 429 (832)
.|-..+.++|.-||+++.. ..|+|-.|+. .....++ .++++.+. .+ ..+
T Consensus 98 ~~s~~~h~~~~~~~~l~~~gi~~e~~s~te~Y~sG~~~~---~i~~~L~---------~~~~I~~il~~~~~~~~~~~~~ 165 (515)
T TIGR00467 98 KTSYAEHFLIPFLESLPVLGINPEFIRASKQYTSGLYAS---QIKIALD---------HRKEISEILNEYRTSKLEENWY 165 (515)
T ss_pred cHHHHHHHHHHHHHHHHHcCCeEEEEEHHHhhhcCChHH---HHHHHHH---------hHHHHHHHHHHhcCCccCCCce
Confidence 3444567777778886432 1233333332 2222221 12333321 11 011
Q ss_pred CCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCCCCCceEEEeeeCCC-----CCCC-Cc--eeE-eeccceeeee
Q psy17575 430 PWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLPH-----HRTG-DS--WCI-YPTYDYTHCL 500 (832)
Q Consensus 430 ~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~~~D~V~~Ri~~~~h-----~r~g-d~--~~i-~PtY~fA~~V 500 (832)
|. .++.+ +.|+... .++ ..+. .+.|.|++. ..| .+.| .+ |.+ ||+=
T Consensus 166 P~--~pic~--------~cGrv~~--~~~--~~~~----~~~v~Y~c~-cG~~g~~~~~~g~~KL~WkvdW~~R------ 220 (515)
T TIGR00467 166 PI--SVFCE--------NCGRDTT--TVN--NYDN----EYSIEYSCE-CGNQESVDIYTGAIKLPWRVDWPAR------ 220 (515)
T ss_pred ee--eeecC--------CcCccCc--eEE--EecC----CceEEEEcC-CCCEEEEeecCCCcccCCCCCcHhh------
Confidence 11 11111 1233211 111 1111 114666653 111 1111 11 544 4432
Q ss_pred ecCCCCcceeeecccccccc---hhHHHHH-HhcCCCCCC--cccccccCCCCcccchhHHHHhhhcCccCCCCCcchhh
Q psy17575 501 CDSIEHITHSLCTKEFQSRR---SSYYWLC-NALDIYCPV--QWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFT 574 (832)
Q Consensus 501 dD~l~gITHvlRg~E~~~~~---~~~~~L~-~aL~~~~P~--~~ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~t 574 (832)
-+..|||-=-=|.||..+. .....++ ++||.++|. .++|-||...|.|||||+++ ..|
T Consensus 221 -W~~lgV~~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~P~~~~ye~v~L~~~g~KMSKS~Gn---------------~it 284 (515)
T TIGR00467 221 -WKIEKVTFEPAGKDHAAAGGSYDTGVNIAKEIFQYSPPVTVQYEWISLKGKGGKMSSSKGD---------------VIS 284 (515)
T ss_pred -HhhhCcccccCCCCccCccCCchhHHHHHHHHhCCCCCcCcEEEEEEEcCCCccccCCCCC---------------Ccc
Confidence 2346777777799998644 3334455 489888774 45567777678899999964 248
Q ss_pred HHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHH
Q psy17575 575 LTALRRRGFPPEAINKFCARMGVTGAQAVVSPNML 609 (832)
Q Consensus 575 L~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~l 609 (832)
+..+.+. +.|++++-|+..-. ..+...|+++.|
T Consensus 285 l~dll~~-~~pdalR~~~l~~~-~~~~ldFd~~~l 317 (515)
T TIGR00467 285 VKDVLEV-YTPEITRFLFARTK-PEFHISFDLDVI 317 (515)
T ss_pred HHHHHHH-cCHHHHHHHHhccC-CCCCCcCCHHHH
Confidence 8888887 89999998754433 455667777766
No 66
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=97.74 E-value=9.8e-05 Score=82.08 Aligned_cols=169 Identities=18% Similarity=0.198 Sum_probs=104.8
Q ss_pred CCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC----Ccc----cccHHHHHHHHHHHHHcCCCcC--cccccchhHH
Q psy17575 327 EPNGILHIGHAKAININFGYAAAHNGICFLRYDDT----NPE----KEEEKFFTGIKDMVQWLGYKPY--QITHSSDYFH 396 (832)
Q Consensus 327 sPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT----Dp~----r~~~e~~~~I~edL~WLGl~pd--~~~~qSd~~~ 396 (832)
.|||.+||||...++.+|..- +.|..+++=|-|. ++. .......+.+..++-.+|++|+ .+..||+..
T Consensus 10 ~PTG~~HlG~~l~~~~~~~~~-q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if~qS~~~- 87 (328)
T TIGR00233 10 QPSGKMHLGHYLGAIQTKWLQ-QFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTFIFLQSDYP- 87 (328)
T ss_pred CCCcHhHHHHHHHHHHHHHHH-hCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheEEEEcCCcH-
Confidence 588999999999999999877 6677766666654 221 1233455566677778999998 468899976
Q ss_pred HHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCCCCCceEEEe
Q psy17575 397 QLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRI 476 (832)
Q Consensus 397 ~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~~~D~V~~Ri 476 (832)
.|++.+-.|- |++|-.++++.-. +.++... + ++
T Consensus 88 e~~el~~~l~-------~~~t~~~l~r~~~----~k~k~~~---------------~----------------~~----- 120 (328)
T TIGR00233 88 EHYELAWLLS-------CQVTFGELKRMTQ----FKDKSQA---------------E----------------NV----- 120 (328)
T ss_pred HHHHHHHHHH-------ccCCHHHHHhccC----cchhccC---------------C----------------CC-----
Confidence 4666665443 8888888865311 1111000 0 00
Q ss_pred eeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcC------CCCCCccc--c-ccc-CCC
Q psy17575 477 KFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALD------IYCPVQWE--Y-GRL-NVN 546 (832)
Q Consensus 477 ~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~------~~~P~~~e--f-~hL-~l~ 546 (832)
.. ...+||..+=|.++ +.+.++|..|.|-..+-..-.-+.+.+| +..|.... + .+| .++
T Consensus 121 ------~~--g~l~YP~lqaaDil---~~~~d~vpvG~DQ~~h~elaRdia~r~n~~~~~~f~~P~~l~~~~~~~l~gl~ 189 (328)
T TIGR00233 121 ------PI--GLFSYPVLQAADIL---LYQADLVPVGIDQDQHLELTRDLAERFNKKFKNFFPKPESLISKFFPRLMGLS 189 (328)
T ss_pred ------Cc--hhhcchHHHHhhhh---hcCCCeeecccccHHHHHHHHHHHHHhhhhcCcccCCChhhhccccCCCCCCC
Confidence 00 12236666544332 4578899999997665555555677777 55564221 1 222 245
Q ss_pred CcccchhHH
Q psy17575 547 YTVVSKRKI 555 (832)
Q Consensus 547 gtkLSKRk~ 555 (832)
|+||||+..
T Consensus 190 ~~KMSKS~~ 198 (328)
T TIGR00233 190 GKKMSKSDP 198 (328)
T ss_pred CCcCCCCCC
Confidence 679999974
No 67
>PLN02286 arginine-tRNA ligase
Probab=97.68 E-value=4.9e-05 Score=90.28 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=23.7
Q ss_pred ceEEee-CCCCCCcCchHHHHHHHHHHHHHH
Q psy17575 319 KVRTRF-PPEPNGILHIGHAKAININFGYAA 348 (832)
Q Consensus 319 ~v~tRF-aPsPtG~LHIGharaaL~n~l~Ar 348 (832)
+|+.=| .|.|||+||+||+|++++=..+|+
T Consensus 118 ~v~VEfsSpNp~kplHvGHlRsaiiGdsLar 148 (576)
T PLN02286 118 RAVVDFSSPNIAKEMHVGHLRSTIIGDTLAR 148 (576)
T ss_pred eEEEEecCCCCCCCCccccccchhhHHHHHH
Confidence 455544 699999999999999998655554
No 68
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.56 E-value=0.00056 Score=77.22 Aligned_cols=186 Identities=18% Similarity=0.179 Sum_probs=108.6
Q ss_pred HHHHHHhhhhc-CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCc----c---cccHHHHHHHHHH
Q psy17575 306 HDLLREHIKYT-GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNP----E---KEEEKFFTGIKDM 377 (832)
Q Consensus 306 ~~~~~~hl~~~-~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp----~---r~~~e~~~~I~ed 377 (832)
.+.+.++++.. .-.+.+=|. |||.|||||.. .+.+|.+-...|..+++-|-|.-. . .+..++...++.+
T Consensus 54 ~d~il~~~~~~~~~~iytG~~--PSG~lHLGh~~-~~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~ 130 (368)
T PRK12285 54 YDKILEAYRNGKPFAVYTGFM--PSGPMHIGHKM-VFDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEYILD 130 (368)
T ss_pred HHHHHHHHhcCCCeEEEEccC--CCCCccHHHHH-HHHHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHH
Confidence 44444445432 223455555 45899999986 566666556678888877777521 1 1233455557778
Q ss_pred HHHcCCCcC--cccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCC
Q psy17575 378 VQWLGYKPY--QITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGE 455 (832)
Q Consensus 378 L~WLGl~pd--~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~ 455 (832)
+-.+|++|+ .+..||++.+ +|+.+..| -|.+|-.++++.-+. ..+. +
T Consensus 131 ~lA~G~Dp~k~~i~~qS~~~~-~~~l~~~l-------~~~~t~~~l~r~~~f-----~~~~--~---------------- 179 (368)
T PRK12285 131 LIALGFDPDKTEIYFQSENIK-VYDLAFEL-------AKKVNFSELKAIYGF-----TGET--N---------------- 179 (368)
T ss_pred HHHhCCCccceEEEECCchHH-HHHHHHHH-------HhhCcHHHHHHhhCC-----CCCC--c----------------
Confidence 889999998 4788999874 78877766 467777777543110 0000 0
Q ss_pred ceEEEEecccCCCCCceEEEeeeCCCCCCCCceeEeeccceeeee---ecCCCCcceeeecccccccchhHHHHHHhc--
Q psy17575 456 ATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCL---CDSIEHITHSLCTKEFQSRRSSYYWLCNAL-- 530 (832)
Q Consensus 456 ~~lR~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~V---dD~l~gITHvlRg~E~~~~~~~~~~L~~aL-- 530 (832)
.| ...||.-+=|.++ .|.-..-++|..|.|-..+-..-.-+...+
T Consensus 180 ----------------------------~g--~~~YP~lQaADil~~~~~~~~~~~lvPvG~DQ~~h~~ltRdiA~r~n~ 229 (368)
T PRK12285 180 ----------------------------IG--HIFYPATQAADILHPQLEEGPKPTLVPVGIDQDPHIRLTRDIAERLHG 229 (368)
T ss_pred ----------------------------hh--hhhhhHHHHHHHHhhcccccCCceEEEeccchHHHHHHHHHHHHHHhh
Confidence 00 1114433322222 111135578999999655444434456666
Q ss_pred --CCCCCCccccccc-CCCCcccchhHH
Q psy17575 531 --DIYCPVQWEYGRL-NVNYTVVSKRKI 555 (832)
Q Consensus 531 --~~~~P~~~ef~hL-~l~gtkLSKRk~ 555 (832)
|+..|....-..+ .++|+||||+..
T Consensus 230 ~~gf~~P~~l~~~~lpgL~G~KMSkS~~ 257 (368)
T PRK12285 230 GYGFIKPSSTYHKFMPGLTGGKMSSSKP 257 (368)
T ss_pred hcCCCCchhHhhhcccCCCCCcCCCCCC
Confidence 8888854322223 567899999973
No 69
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=97.55 E-value=0.00017 Score=81.68 Aligned_cols=89 Identities=29% Similarity=0.292 Sum_probs=61.4
Q ss_pred CCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCcc---------c-----------------------ccHHH
Q psy17575 325 PPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNPE---------K-----------------------EEEKF 370 (832)
Q Consensus 325 aPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp~---------r-----------------------~~~e~ 370 (832)
+|.|||.|||||+++.++.-.+||. ..|.-++.+--+|.- + -..++
T Consensus 9 pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (382)
T cd00817 9 PPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWEWKEES 88 (382)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHHHHHHHH
Confidence 7999999999999999998888765 346555554444431 0 12357
Q ss_pred HHHHHHHHHHcCCCcC--cc--cccchhHHHHHHHHHHHHHcCCccc
Q psy17575 371 FTGIKDMVQWLGYKPY--QI--THSSDYFHQLYEWAVKLIKKGLAYV 413 (832)
Q Consensus 371 ~~~I~edL~WLGl~pd--~~--~~qSd~~~~~ye~A~~Li~~G~AY~ 413 (832)
.+.+.++++.||+..| .. +....+.........+|.++|++|.
T Consensus 89 ~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 135 (382)
T cd00817 89 GGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYR 135 (382)
T ss_pred HHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 7889999999998644 43 3333333334445568999999987
No 70
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.00026 Score=83.90 Aligned_cols=30 Identities=37% Similarity=0.551 Sum_probs=24.3
Q ss_pred ceEEee-CCCCCCcCchHHHHHHHHHHHHHH
Q psy17575 319 KVRTRF-PPEPNGILHIGHAKAININFGYAA 348 (832)
Q Consensus 319 ~v~tRF-aPsPtG~LHIGharaaL~n~l~Ar 348 (832)
+|+.=| +|.|||+|||||+|.+++--.+||
T Consensus 118 kV~iE~sSaNptkplHiGHlR~aiiGDsLar 148 (577)
T COG0018 118 KVVIEYSSANPTGPLHIGHLRNAIIGDSLAR 148 (577)
T ss_pred EEEEEEeCCCCCCCcccchhhhhHHHHHHHH
Confidence 555555 799999999999999998765555
No 71
>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.0038 Score=72.12 Aligned_cols=164 Identities=15% Similarity=0.304 Sum_probs=124.2
Q ss_pred HHHHHH-HhCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHHHHHhhccCC-------CccchHHHHHH
Q psy17575 64 SMISAF-LSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQ-------SSIHLPLLVKY 135 (832)
Q Consensus 64 ~l~~lF-~~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy~lAtk~k~~-------~~~~r~~l~~~ 135 (832)
+.++.| ...|||++-|.++++.+.+ ..|.++.+. ++. +.-.+..|.+.-..+... ...|..-+.+.
T Consensus 458 ek~~r~~~eygLs~~LA~~~~~~~~~-~~FEel~e~-~v~----p~~~A~~L~~~~~~L~reg~~i~~l~~~~i~~~~~~ 531 (631)
T COG2511 458 EKVERYVKEYGLSKELAEQLASDPRV-DLFEELVEK-GVD----PTLIASTLVNTLPELRREGVEIDNLDDEHIEELLRL 531 (631)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhhhhH-HHHHHHHHc-CCC----HHHHHHHHHHHHHHHHhcCCccccCCHHHHHHHHHH
Confidence 445555 4489999999999998665 345444433 442 344455555544333322 35778889999
Q ss_pred HHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHh-
Q psy17575 136 IVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRT- 214 (832)
Q Consensus 136 I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vR~- 214 (832)
+.+|+|.- .|+..+++++.+++. -+.++.-+..|.. ..++|||++.|.++++++.+.+.+.+-. .+|.|||.+=+
T Consensus 532 ~~~g~iak-e~iee~l~~l~~~p~-~~~~e~~~~~gL~-~ls~eEve~iI~eii~~~~d~i~~rg~~-a~g~lmg~~M~~ 607 (631)
T COG2511 532 VSEGKIAK-EAIEEILKALAENPG-KDAAEIAEKLGLK-ELSEEEVEKIIDEIIESNLDVIKERGMG-AMGLLMGRVMAK 607 (631)
T ss_pred HhcccchH-HHHHHHHHHHHhCCC-CCHHHHHHHhccc-cCCHHHHHHHHHHHHHhhHHHHHHhchh-hHHHHHHHHHHH
Confidence 99999985 999999999998764 6778888887764 7899999999999999999998887766 58899998544
Q ss_pred hCCCCChhhhHHHHHHHHHhhcC
Q psy17575 215 LLKWADGKYIKSEVDVQVLNLLG 237 (832)
Q Consensus 215 ~LkWAd~k~vK~~vD~~~l~lLG 237 (832)
.=-=|||+.|...+.+.+.+.+|
T Consensus 608 ~rg~aDgk~v~e~lr~~i~e~~~ 630 (631)
T COG2511 608 LRGRADGKLVSEILREKLQEILG 630 (631)
T ss_pred hhccCCcHHHHHHHHHHHHHhhc
Confidence 33469999999999998888776
No 72
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=97.28 E-value=0.0014 Score=73.10 Aligned_cols=89 Identities=19% Similarity=0.202 Sum_probs=58.6
Q ss_pred CCCCcCchHHHHHHHHHHHHH-HhcCCEEEEeccCC-------CcccccHHHHHHHHHHHHHcCCCcC--cccccchhHH
Q psy17575 327 EPNGILHIGHAKAININFGYA-AAHNGICFLRYDDT-------NPEKEEEKFFTGIKDMVQWLGYKPY--QITHSSDYFH 396 (832)
Q Consensus 327 sPtG~LHIGharaaL~n~l~A-r~~gG~~iLRiDDT-------Dp~r~~~e~~~~I~edL~WLGl~pd--~~~~qSd~~~ 396 (832)
.|||.+||||...++-||..- ..+|..+++=|=|. ||+. ..++...+..++-.+|++|+ .+..||+.-+
T Consensus 11 qPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~~-l~~~~~~~~~~~lA~GlDP~k~~if~qS~v~~ 89 (332)
T PRK12556 11 KPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQ-FRSYTREVAATWLSLGLDPEDVIFYRQSDVPE 89 (332)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHHH-HHHHHHHHHHHHhheeecccceEEEECCCchH
Confidence 478999999999999999655 44565555545443 2222 23444456667778999998 4788999643
Q ss_pred HHHHHHHHHHHcCCccccCCCHHHHhcc
Q psy17575 397 QLYEWAVKLIKKGLAYVCHQKSDEMKGF 424 (832)
Q Consensus 397 ~~ye~A~~Li~~G~AY~C~Cs~eel~~~ 424 (832)
.++.+.. ..|.++-.+|.++
T Consensus 90 -~~eL~~i-------l~~~t~~g~L~R~ 109 (332)
T PRK12556 90 -IFELAWI-------LSCLTPKGLMNRA 109 (332)
T ss_pred -HHHHHHH-------HHccchHHHHHhc
Confidence 3443332 3478777777643
No 73
>TIGR00134 gatE_arch glutamyl-tRNA(Gln) amidotransferase, subunit E. The Archaea have an Asp-tRNA(Asn) amidotransferase instead of an Asp--tRNA ligase, but the genes have not been identified. It is likely that this protein replaces gatB in Asp-tRNA(Asn) amidotransferase but that both enzymes share gatA.
Probab=97.26 E-value=0.0048 Score=73.75 Aligned_cols=159 Identities=15% Similarity=0.201 Sum_probs=117.8
Q ss_pred HHHHHHH-hCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHHHHHhhccCC-------CccchHHHHHH
Q psy17575 64 SMISAFL-SVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQ-------SSIHLPLLVKY 135 (832)
Q Consensus 64 ~l~~lF~-~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy~lAtk~k~~-------~~~~r~~l~~~ 135 (832)
+..+.|. ..||++.-|.-++.+. .+.-+.+++..++. -++...+.|.+....++.. ...|...|++.
T Consensus 450 ~~~~r~~~~ygls~~~A~~l~~~~-~~~~fe~~~~~~~~----~~~~~an~l~~~~~~l~~~~~~~~~~~~~~l~~l~~~ 524 (620)
T TIGR00134 450 EKKERIMREYGLSEDLASQLVKSN-YVDEFEALTEKFRV----DPTVIASLLAYTLRELRREGHDIDGLELRHLRDAIKL 524 (620)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhch-HHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHhCCCCcccCCHHHHHHHHHH
Confidence 4455555 6899999999988885 67777666554432 2466666666554434322 23688889999
Q ss_pred HHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHhh
Q psy17575 136 IVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTL 215 (832)
Q Consensus 136 I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vR~~ 215 (832)
|.+|+|.. .++...++.+..++. +.++.-++.|.. .+|.++|+++|+++|++|.+.+.+.+-+ .+|.+||+|.+.
T Consensus 525 ~~~g~is~-~~~k~vl~~~~~~~~--~~~~iiee~gL~-qlsdeel~~iV~evI~en~~~V~~~~~k-~~G~lmGqVMk~ 599 (620)
T TIGR00134 525 LEVGKIAK-EGLREILKCMCDEPL--AAEDAARKLKLK-LLAEEEIESIIQEIIEENLDMISERGEG-AMGPLMGQAMGR 599 (620)
T ss_pred HHcCCCcH-HHHHHHHHHHHhCCC--CHHHHHHHcCCc-CCCHHHHHHHHHHHHHhChHhhhccCHh-HHHHHHHHHHHH
Confidence 99999975 677778887765543 566788889864 5799999999999999998877775544 689999999875
Q ss_pred CCC-CChhhhHHHHHHHH
Q psy17575 216 LKW-ADGKYIKSEVDVQV 232 (832)
Q Consensus 216 LkW-Ad~k~vK~~vD~~~ 232 (832)
.+= |||+.|.+.|.+.+
T Consensus 600 tkGkAdp~~V~~lLke~L 617 (620)
T TIGR00134 600 LRGKADGKVVNRILRKKL 617 (620)
T ss_pred hcCCCCHHHHHHHHHHHH
Confidence 554 99999999887755
No 74
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=97.22 E-value=0.0066 Score=74.32 Aligned_cols=170 Identities=16% Similarity=0.234 Sum_probs=122.7
Q ss_pred cccccchhhHHHHHHHHHh-CCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHH-HHHhhccCC------
Q psy17575 53 VVSNIMTEIADSMISAFLS-VGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLY-HLASKIKSQ------ 124 (832)
Q Consensus 53 ~~~~~~~~~~~~l~~lF~~-iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy-~lAtk~k~~------ 124 (832)
...-.++ .++..+.|.+ .||++.-|.-++.++.++.-+.+++... . -++...+.|. .|...++..
T Consensus 589 ~~~~~~~--~~~r~~Rlv~eyGLs~~dA~~L~~d~~la~yFE~~v~~~-~----~pk~aANWl~~El~~~Lne~~i~~~~ 661 (771)
T PRK14703 589 AAALNPE--QRARFDRYLSELGLNEEDARTLARDPALAAFFEAALAAG-K----SPVQLANWVVNDLAGLLRDRELAALP 661 (771)
T ss_pred cccCCHh--HHHHHHHHHHHcCCCHHHHHHHHcChHHHHHHHHHHHcC-C----CHHHHHHHHHHHHHHHHhcCCCccCC
Confidence 3444444 6667777775 8999999999999999998888876532 1 2455555433 344443332
Q ss_pred -CccchHHHHHHHHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcc--c
Q psy17575 125 -SSIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKR--Y 201 (832)
Q Consensus 125 -~~~~r~~l~~~I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~r--y 201 (832)
...+...|+..|.+|+|.. .+....++-+-..+ -+.++.-++.|.+.+-.+++|+++|+++|++|.+.+.+-| -
T Consensus 662 l~pe~LaeLv~lV~~g~IS~-~~AK~VL~~m~~~~--~~p~~IIee~GL~qisDe~~Le~iV~eVI~~NP~~Ve~yk~GK 738 (771)
T PRK14703 662 FTPAALARLVALVDAGRIST-RIAKDVLAELAASG--GDPEAIVEAKGLEQVSDAGALEPIVEEVLAAHPDKVAAYRAGK 738 (771)
T ss_pred CCHHHHHHHHHHHHcCCccH-HHHHHHHHHHHhcC--CCHHHHHHhcCCcccCCHHHHHHHHHHHHHHCHHHHHHHhcch
Confidence 3468899999999999976 66677777665432 4788999999999776668999999999999999877644 1
Q ss_pred ccchhhhHHHHHhhC-CCCChhhhHHHHHHHH
Q psy17575 202 RYNLGLVMQEVRTLL-KWADGKYIKSEVDVQV 232 (832)
Q Consensus 202 ~~n~g~ll~~vR~~L-kWAd~k~vK~~vD~~~ 232 (832)
.--+|-|||+|=+.. ==|||+.|.+.|.+.+
T Consensus 739 ~kalgfLVGqVMK~tkGKAdP~~V~elLke~L 770 (771)
T PRK14703 739 TKLLGFFVGQVMRETGGKANPQQVRELLQKKL 770 (771)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 225778888885533 4589999998887643
No 75
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=97.19 E-value=0.0023 Score=71.33 Aligned_cols=188 Identities=16% Similarity=0.096 Sum_probs=110.2
Q ss_pred HHHHHHhhhhcCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC-----Cc--ccccHHHHHHHHHHH
Q psy17575 306 HDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDT-----NP--EKEEEKFFTGIKDMV 378 (832)
Q Consensus 306 ~~~~~~hl~~~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-----Dp--~r~~~e~~~~I~edL 378 (832)
.+.|++.++. +.+.+.=..=.|||.+||||+- ++.+|..-...|..+++=|-|. |+ ..........+..++
T Consensus 18 ~~el~~~l~~-~~~~~v~~G~~PTG~lHLG~~~-~~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~ 95 (329)
T PRK08560 18 EEELRELLES-KEEPKAYIGFEPSGKIHLGHLL-TMNKLADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKVF 95 (329)
T ss_pred HHHHHHHHhC-CCCCEEEEccCCCCcchhhhhH-HHHHHHHHHHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHHH
Confidence 6777777753 3343333555678999999976 6777777666687777767664 21 123345666778888
Q ss_pred HHcCCCcC--cccccchhHHH--HHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCC
Q psy17575 379 QWLGYKPY--QITHSSDYFHQ--LYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEG 454 (832)
Q Consensus 379 ~WLGl~pd--~~~~qSd~~~~--~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g 454 (832)
..+|++|+ .+..||+.... |+..+..| .|.++-.++.+.... .|+..++
T Consensus 96 ~A~G~dp~k~~i~~qS~~~~~~~~~~~~~~l-------~~~~~~~~l~r~~~~--------------------~~~~~~~ 148 (329)
T PRK08560 96 EALGLDPDKTEFVLGSEFQLDKEYWLLVLKL-------AKNTTLARARRSMTI--------------------MGRRMEE 148 (329)
T ss_pred HHcCCChhheEEEecchhhccchHHHHHHHH-------HhhccHHHHHHhhhh--------------------hcccCCC
Confidence 88999998 46788886432 33333333 377777766642110 0000000
Q ss_pred CceEEEEecccCCCCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCC
Q psy17575 455 EATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC 534 (832)
Q Consensus 455 ~~~lR~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~ 534 (832)
.+ .| ...||.-+=| |=.+.+.++|..|.|-..+-..-.-+++.++...
T Consensus 149 ------------~~---------------~g--~l~YP~lqaa---Dil~~~ad~vpvG~DQ~~h~~l~Rdia~~~n~~~ 196 (329)
T PRK08560 149 ------------PD---------------VS--KLVYPLMQVA---DIFYLDVDIAVGGMDQRKIHMLAREVLPKLGYKK 196 (329)
T ss_pred ------------CC---------------HH--HHHHHHHHHH---HHHHhCCCEEEechhHHHHHHHHHHhhHhcCCCC
Confidence 00 00 1124444322 2223467899999997655444455667788777
Q ss_pred CCccccccc-CCCCc--ccchhH
Q psy17575 535 PVQWEYGRL-NVNYT--VVSKRK 554 (832)
Q Consensus 535 P~~~ef~hL-~l~gt--kLSKRk 554 (832)
|....-..| .++|. ||||+.
T Consensus 197 p~~l~~~~l~~L~g~~~KMSKS~ 219 (329)
T PRK08560 197 PVCIHTPLLTGLDGGGIKMSKSK 219 (329)
T ss_pred ceEEEcCccCCCCCCCCCCcCCC
Confidence 754332333 45675 999997
No 76
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=97.04 E-value=0.0012 Score=81.70 Aligned_cols=95 Identities=23% Similarity=0.246 Sum_probs=67.0
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCc----------------ccccHHHHHHHHHHHHHc
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNP----------------EKEEEKFFTGIKDMVQWL 381 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp----------------~r~~~e~~~~I~edL~WL 381 (832)
+++==+|.|||.|||||+++.++-..+||. ..|.-++.+--+|. ..-..++.+.|.++++.|
T Consensus 35 ~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~~l 114 (805)
T PRK00390 35 YVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKSL 114 (805)
T ss_pred EEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 444446999999999999999998888875 45666665544442 122457899999999999
Q ss_pred CCC--cCccc--ccchhHHHHHHHHHHHHHcCCcccc
Q psy17575 382 GYK--PYQIT--HSSDYFHQLYEWAVKLIKKGLAYVC 414 (832)
Q Consensus 382 Gl~--pd~~~--~qSd~~~~~ye~A~~Li~~G~AY~C 414 (832)
|+. |+..+ ...+|.........+|.++|++|.-
T Consensus 115 Gi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~ 151 (805)
T PRK00390 115 GFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRK 151 (805)
T ss_pred CCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEe
Confidence 985 44433 3334444444555689999999875
No 77
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=97.03 E-value=0.0013 Score=81.48 Aligned_cols=93 Identities=27% Similarity=0.388 Sum_probs=66.6
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCc----------------ccccHHHHHHHHHHHHHc
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNP----------------EKEEEKFFTGIKDMVQWL 381 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp----------------~r~~~e~~~~I~edL~WL 381 (832)
+++==+|.|||.|||||+++.++...+||. ..|.-++..--+|. ..-..++.+.+.++++.|
T Consensus 32 ~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~l 111 (842)
T TIGR00396 32 YILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQAL 111 (842)
T ss_pred EEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 455558999999999999999999888875 45666666554442 112357889999999999
Q ss_pred CCC--cCcccccchhHHHHHHHH----HHHHHcCCcccc
Q psy17575 382 GYK--PYQITHSSDYFHQLYEWA----VKLIKKGLAYVC 414 (832)
Q Consensus 382 Gl~--pd~~~~qSd~~~~~ye~A----~~Li~~G~AY~C 414 (832)
|+. |+..+..++ +.|++.. .+|.++|++|.-
T Consensus 112 G~~~Dw~~~~~T~d--~~y~~~~~~~F~~L~~kGliy~~ 148 (842)
T TIGR00396 112 GFSYDWDREIATCD--PEYYKWTQWIFLELFEKGLAYVK 148 (842)
T ss_pred CCcccCCCCcccCC--HHHHHHHHHHHHHHHHCCCeEee
Confidence 975 555444433 3455444 589999998864
No 78
>PRK04028 glutamyl-tRNA(Gln) amidotransferase subunit E; Validated
Probab=97.01 E-value=0.011 Score=70.74 Aligned_cols=165 Identities=16% Similarity=0.262 Sum_probs=119.6
Q ss_pred HHHHHHHHh-CCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHHHHHhhccCC-------CccchHHHHH
Q psy17575 63 DSMISAFLS-VGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQ-------SSIHLPLLVK 134 (832)
Q Consensus 63 ~~l~~lF~~-iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy~lAtk~k~~-------~~~~r~~l~~ 134 (832)
++..+.|.. .||++.-|.-++.++. +.-+.+++.. . .-++...+.|.+....++.. ...+...|+.
T Consensus 456 ~~~~~r~~~~ygls~~~a~~L~~~~~-~~~f~~~~~~-~----~~~~~~anwl~~~~~~l~~~~~~~~~i~~~~l~~l~~ 529 (630)
T PRK04028 456 EEKVERLIKEYGLSEELAEQLAYSER-LDLFEELVKK-G----VDPTLIASTLENTLKELRREGVDVENITDEHIEEVFK 529 (630)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCCch-HHHHHHHHHh-C----CCHHHHHHHHHHHHHHHHhCCCCcccCCHHHHHHHHH
Confidence 345555654 8999999987777765 6666665432 1 23577777777765444432 2367888899
Q ss_pred HHHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHh
Q psy17575 135 YIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRT 214 (832)
Q Consensus 135 ~I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vR~ 214 (832)
.|.+|+|.. .+....++-+-+.+ .-+.++.-++.|.. .+|.++|+++|+++|++|.+.+...+ .-.+|.+||+|.+
T Consensus 530 ~~~~~~is~-~~ak~v~~~~~~~~-~~~~~~IIee~gl~-qiSD~eL~~iV~evIaenpk~V~~gk-~K~~G~lmGqVMk 605 (630)
T PRK04028 530 LVSEGKIAK-EAIEEILKELAENP-GKSAEEAAEELGLK-GLSEEEVEKIIDEIVEENIDFVKEKG-MGAFGPLMGEVMA 605 (630)
T ss_pred HHHcCCccH-HHHHHHHHHHHhcC-CCCHHHHHHHhCcc-cCCHHHHHHHHHHHHHhChHhHhccC-HhHHHHHHHHHHH
Confidence 999999986 55666776444332 25788899999987 56899999999999999877666543 3368999999977
Q ss_pred hCC-CCChhhhHHHHHHHHHhhcC
Q psy17575 215 LLK-WADGKYIKSEVDVQVLNLLG 237 (832)
Q Consensus 215 ~Lk-WAd~k~vK~~vD~~~l~lLG 237 (832)
..+ =|||+.|.+.|.+.+-+.+|
T Consensus 606 ~tkGkAdp~~V~~llke~L~~~~~ 629 (630)
T PRK04028 606 ELRGKADGKLVSEILREKLKEILN 629 (630)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHhc
Confidence 544 49999999999988776654
No 79
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.98 E-value=0.0029 Score=68.78 Aligned_cols=171 Identities=15% Similarity=0.146 Sum_probs=99.8
Q ss_pred CCCC-cCchHHHHHHHHHHHHHHhcCCEEEEeccCC-----Cc-----------ccccHHHHHHHHHHHHHcCCC--cC-
Q psy17575 327 EPNG-ILHIGHAKAININFGYAAAHNGICFLRYDDT-----NP-----------EKEEEKFFTGIKDMVQWLGYK--PY- 386 (832)
Q Consensus 327 sPtG-~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-----Dp-----------~r~~~e~~~~I~edL~WLGl~--pd- 386 (832)
.||| .|||||+.. +.++..-+..|..+++=|-|- || .....+....|..++..+|+. |+
T Consensus 7 ~PTg~~lHlGh~~~-l~~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~d~~p~k 85 (273)
T cd00395 7 DPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGIFEDPTQ 85 (273)
T ss_pred cCCCCCccHHHHHH-HHHHHHHHHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcCcCCCcc
Confidence 4889 799999988 777766666665655533221 33 122345667788889999998 76
Q ss_pred -cccccchhHH--HHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEec
Q psy17575 387 -QITHSSDYFH--QLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKIT 463 (832)
Q Consensus 387 -~~~~qSd~~~--~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~ 463 (832)
.+..||+.+. .+++.+..|- |+++-.+|.+... |.+.. ..+. +
T Consensus 86 ~~i~~ns~~~~~~~~~~l~~~l~-------~~~~~~~l~~~~~----------------~k~r~----~~~~-------~ 131 (273)
T cd00395 86 ATLFNNSDWPGPLAHIQFLRDLG-------KHVYVNYMERKTS----------------FQSRS----EEGI-------S 131 (273)
T ss_pred eEEEEccccCCcccHHHHHHHHH-------ccCcHHHHHhChH----------------HHHHh----cCCC-------C
Confidence 4788998764 3555555443 6777777764311 11100 0010 0
Q ss_pred ccCCCCCceEEEeeeCCCCCCCCceeEee---ccceeeeeecCCCCcceeeecccccccchhHHHHHHhcC-CCCCCccc
Q psy17575 464 LEEGKQDPVAYRIKFLPHHRTGDSWCIYP---TYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALD-IYCPVQWE 539 (832)
Q Consensus 464 ~~~~~~D~V~~Ri~~~~h~r~gd~~~i~P---tY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~-~~~P~~~e 539 (832)
. -.+ .|| +||+-+. ..-.+.++++-|.|-..+-..-.-+...++ ...|....
T Consensus 132 ~-----~~~-----------------~Yp~lQaaD~l~l--~~~~~~~~vp~G~DQ~~~i~l~rdla~r~n~~~~p~~l~ 187 (273)
T cd00395 132 A-----TEF-----------------TYPPLQAADFLLL--NTTEGCDIQPGGSDQWGNITLGRELARRFNGFTIAEGLT 187 (273)
T ss_pred c-----hhh-----------------hhHHHHHHHHHHH--hcccCCcEEEecHHHHHHHHHHHHHHHHhCCCCCCeEEe
Confidence 0 000 122 2222110 112567899999997666555556677775 45675444
Q ss_pred cccc-CCCCcccchhHHH
Q psy17575 540 YGRL-NVNYTVVSKRKIA 556 (832)
Q Consensus 540 f~hL-~l~gtkLSKRk~~ 556 (832)
...| .++|.||||+...
T Consensus 188 ~p~l~~l~G~KMSKS~~~ 205 (273)
T cd00395 188 IPLVTKLDGPKFGKSESG 205 (273)
T ss_pred eccccCCCCCcCCCCCCC
Confidence 4444 4579999999753
No 80
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=96.89 E-value=0.002 Score=79.63 Aligned_cols=90 Identities=21% Similarity=0.189 Sum_probs=61.9
Q ss_pred CCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCC-----------------Cccc------------ccHHHHHH
Q psy17575 325 PPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDT-----------------NPEK------------EEEKFFTG 373 (832)
Q Consensus 325 aPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDT-----------------Dp~r------------~~~e~~~~ 373 (832)
+|.|||.|||||+++.++--.+||. ..|.-++.+--+ ++.. -..++.+.
T Consensus 46 pPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~~~~~~~~ 125 (800)
T PRK13208 46 PPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRELTDEDEKK 125 (800)
T ss_pred cCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999888875 456666653322 3321 23467889
Q ss_pred HHHHHHHcCCC--cCcccccch--hHHHHHHHHHHHHHcCCcccc
Q psy17575 374 IKDMVQWLGYK--PYQITHSSD--YFHQLYEWAVKLIKKGLAYVC 414 (832)
Q Consensus 374 I~edL~WLGl~--pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C 414 (832)
|.++++.||+. |+..+..++ |.........+|.++|++|..
T Consensus 126 ~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~ 170 (800)
T PRK13208 126 FRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRA 170 (800)
T ss_pred HHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCCCeeec
Confidence 99999999975 545444333 222222334479999998865
No 81
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=96.85 E-value=0.0036 Score=70.30 Aligned_cols=237 Identities=19% Similarity=0.225 Sum_probs=105.3
Q ss_pred HHHHHHhhhh--cCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHh-----cCCEEEEeccCCCccccc-----------
Q psy17575 306 HDLLREHIKY--TGGKVRTRFPPEPNGILHIGHAKAININFGYAAA-----HNGICFLRYDDTNPEKEE----------- 367 (832)
Q Consensus 306 ~~~~~~hl~~--~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~-----~gG~~iLRiDDTDp~r~~----------- 367 (832)
.++++++.+. .++.++.-=.=+|||..||||+|-++..++.++. ..-++|+=-||-|+=|..
T Consensus 9 ~~i~~~r~~~~~~~~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ 88 (360)
T PF01921_consen 9 DEIIKERGKRKGGKEPYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEK 88 (360)
T ss_dssp HHHHHHC-------SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCC
T ss_pred HHHHHHhhccccCCccEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHH
Confidence 3455444443 3567888888899999999999999998888765 235789999999987643
Q ss_pred --------------------HHHHHHHHHHHHHcCCCcCc----ccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhc
Q psy17575 368 --------------------EKFFTGIKDMVQWLGYKPYQ----ITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKG 423 (832)
Q Consensus 368 --------------------~e~~~~I~edL~WLGl~pd~----~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~ 423 (832)
+.|...+.+.|+.||+++.. ..|+|-.|+.... ..++ .+++|.+
T Consensus 89 ylg~Plt~VPdP~G~~~SyaeH~~~~~~~~L~~~gie~e~~s~te~Y~sG~y~~~i~---~aL~---------~~~~I~~ 156 (360)
T PF01921_consen 89 YLGKPLTRVPDPFGCHESYAEHFNAPFEEFLDEFGIEYEFISQTEMYRSGRYDEQIR---TALE---------NRDEIRE 156 (360)
T ss_dssp CTTSBTTTSB-TTSSSSCHHHHHHHHHHHHHHTTT---EEEECCCCCCTTTTHHHHC---HHHH---------THHHHHH
T ss_pred hcCCccccCCCCCCCCccHHHHHHHHHHHHHHHcCCceEEEeHHHhhhCCchHHHHH---HHHH---------hHHHHHH
Confidence 23555566667777775531 2334433332111 1111 1222221
Q ss_pred c---------CCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEE-EecccCCCCCceEEEeeeCCCC-----CCCC-c
Q psy17575 424 F---------NPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRM-KITLEEGKQDPVAYRIKFLPHH-----RTGD-S 487 (832)
Q Consensus 424 ~---------~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~-K~~~~~~~~D~V~~Ri~~~~h~-----r~gd-~ 487 (832)
. ....+|. .++.++ .|+. .+..+ ..+ ...+-|.|++...-|. +.|. +
T Consensus 157 Il~~~~~~~~~~~y~Pf--~piC~~--------cGri----~tt~v~~~d---~~~~~v~Y~c~~cG~~g~~~i~~g~gK 219 (360)
T PF01921_consen 157 ILNEYRGRERPETYSPF--LPICEK--------CGRI----DTTEVTEYD---PEGGTVTYRCEECGHEGEVDITGGNGK 219 (360)
T ss_dssp HHHHHHHHT--TT--SE--EEEETT--------TEE------EEEEEEE-----SSSEEEEE--TTS---EEETTTT-EE
T ss_pred HHHHhcCcCCCCCeeee--eeeccc--------cCCc----ccceeeEee---cCCCEEEEEecCCCCEEEEecCCCccc
Confidence 1 0000110 000000 1111 01110 111 1245677777333221 2221 1
Q ss_pred --eeE-eeccceeeeeecCCCCcceeeecccccc---cchhHHHHH-HhcCCCCCCcccccccCCCCc-ccchhHHHHhh
Q psy17575 488 --WCI-YPTYDYTHCLCDSIEHITHSLCTKEFQS---RRSSYYWLC-NALDIYCPVQWEYGRLNVNYT-VVSKRKIAKLI 559 (832)
Q Consensus 488 --~~i-~PtY~fA~~VdD~l~gITHvlRg~E~~~---~~~~~~~L~-~aL~~~~P~~~ef~hL~l~gt-kLSKRk~~~lv 559 (832)
|.+ ||+ --+..||+-=-=|+||.+ |......|+ +.||..+|+...|.-+-+.|. ||||++++-
T Consensus 220 L~WkvDW~m-------RW~~lgVdfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~~YE~~~~~g~~kmSsSkG~~-- 290 (360)
T PF01921_consen 220 LQWKVDWPM-------RWAALGVDFEPFGKDHASPGGSYDTSKRIAREILGYEPPVPFPYEFFLDKGGGKMSSSKGNG-- 290 (360)
T ss_dssp E-HHHHHHH-------HHHHTT-SEEEEEHHHHCTTSHHHHHHHHHHHCC-----EEEEE--EEES--------------
T ss_pred ccCCCcChh-------hhhhcCceeccCCCccCCCCCChhhHHHHHHHHhCCCCCCCCCeeEEEeCCCcccccCCCCc--
Confidence 333 333 223578888889999998 888888999 889999998877887777765 999999752
Q ss_pred hcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHH
Q psy17575 560 EENIVNDWDDPRLFTLTALRRRGFPPEAINKFCAR 594 (832)
Q Consensus 560 ~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~ 594 (832)
.|+....+ =++||.|+-|+..
T Consensus 291 -------------~t~~e~L~-~~~PE~lr~l~~~ 311 (360)
T PF01921_consen 291 -------------ITPEEWLE-YAPPESLRYLMAR 311 (360)
T ss_dssp ---------------HHHHHT-TS-HHHHHHHHHC
T ss_pred -------------cCHHHHHH-hcCHHHHHHHHcc
Confidence 36777665 3567777766654
No 82
>PRK05477 gatB aspartyl/glutamyl-tRNA amidotransferase subunit B; Validated
Probab=96.83 E-value=0.018 Score=67.03 Aligned_cols=160 Identities=17% Similarity=0.244 Sum_probs=115.9
Q ss_pred HHHHHHH-hCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHHH-HHhhccCC---------CccchHHH
Q psy17575 64 SMISAFL-SVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYH-LASKIKSQ---------SSIHLPLL 132 (832)
Q Consensus 64 ~l~~lF~-~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy~-lAtk~k~~---------~~~~r~~l 132 (832)
+..+.|. ..||++.-|.-++.++.++.-+.+++.. +. .++...+.|.+ +...++.. ...+...|
T Consensus 300 ~~~~rl~~~ygls~~~a~~L~~~~~~~~~fe~~~~~-~~----~~k~~anwl~~el~~~l~~~~~~~~~~~i~~~~l~~L 374 (474)
T PRK05477 300 AKRARFVEEYGLSEYDARVLTSDKELADYFEAVVAA-GA----DAKLAANWLMGELLGLLNEEGIEIEESPITPEQLAEL 374 (474)
T ss_pred HHHHHHHHHcCCCHHHHHHHHcChHHHHHHHHHHHc-CC----CHHHHHHHHHHHHHHHHHHCCCChhhcCCCHHHHHHH
Confidence 4455565 4999999999999998999988877543 22 34566665544 44333321 23678889
Q ss_pred HHHHHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcc--cccchhhhHH
Q psy17575 133 VKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKR--YRYNLGLVMQ 210 (832)
Q Consensus 133 ~~~I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~r--y~~n~g~ll~ 210 (832)
+..|.+|+|.+ .+....+.-+... ..+.++.-++.|.+.+-.+++|++.|+++|++|.+.+.+-| -.-.+|-|||
T Consensus 375 i~lv~~g~Is~-~~ak~vl~~~~~~--~~~~~~ii~~~gl~~isd~~~l~~iv~evi~~np~~v~~~~~Gk~~~~~~lvG 451 (474)
T PRK05477 375 IKLIDDGTISG-KIAKEVFEEMLET--GGDPDEIVEEKGLKQISDEGALEAIVDEVLAANPKAVEDYKAGKEKALGFLVG 451 (474)
T ss_pred HHHHHcCCccH-HHHHHHHHHHHhc--CCCHHHHHHHcCCcccCCHHHHHHHHHHHHHHCHHHHHHHHcccHHHHHHHHH
Confidence 99999999987 5567777655443 36789999999998544445999999999999999877652 1235788888
Q ss_pred HHHh-hCCCCChhhhHHHHHHH
Q psy17575 211 EVRT-LLKWADGKYIKSEVDVQ 231 (832)
Q Consensus 211 ~vR~-~LkWAd~k~vK~~vD~~ 231 (832)
+|-+ .=--|||+.|.+.+.+.
T Consensus 452 ~vMk~t~GkAdp~~v~~ll~e~ 473 (474)
T PRK05477 452 QVMKATKGKANPKLVNELLKEK 473 (474)
T ss_pred HHHHHhcCCCCHHHHHHHHHHh
Confidence 8844 45569999999888653
No 83
>TIGR00133 gatB glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit. The heterotrimer GatABC is responsible for transferring the NH2 group that converts Glu to Gln, or Asp to Asn after the Glu or Asp has been ligated to the tRNA for Gln or Asn, respectively. In Lactobacillus, GatABC is responsible only for tRNA(Gln). In the Archaea, GatABC is responsible only for tRNA(Asn), while GatDE is responsible for tRNA(Gln). In lineages that include Thermus, Chlamydia, or Acidithiobacillus, the GatABC complex catalyzes both.
Probab=96.64 E-value=0.034 Score=64.95 Aligned_cols=159 Identities=14% Similarity=0.190 Sum_probs=112.5
Q ss_pred HHHHH-HhCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHH-HHHhhccC---------CCccchHHHH
Q psy17575 65 MISAF-LSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLY-HLASKIKS---------QSSIHLPLLV 133 (832)
Q Consensus 65 l~~lF-~~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy-~lAtk~k~---------~~~~~r~~l~ 133 (832)
..+.| ...||++.-|.-++.++.++.-+.+++.. +. -++...+.|. .+...++. -...|...|+
T Consensus 304 ~~~R~~~~ygls~~~a~~L~~~~~~~~~fe~~~~~-~~----~~k~~anwl~~el~~~l~~~~~~i~~~~l~p~~l~~Li 378 (478)
T TIGR00133 304 KRIRLKKEYGLSEQDAKVLTSDLTLADYFEEVVKL-IG----DPKLAANWICIELLGVLNKLQISLAECGLKPSDLAELI 378 (478)
T ss_pred HHHHHHHHcCCCHHHHHHHHcChHHHHHHHHHHHc-CC----CHHHHHHHHHHHHHHHHHHCCCCHhhcCCCHHHHHHHH
Confidence 33445 56899999999999999999999877543 21 2455555543 23222221 1346889999
Q ss_pred HHHHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhc--ccccchhhhHHH
Q psy17575 134 KYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDK--RYRYNLGLVMQE 211 (832)
Q Consensus 134 ~~I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~--ry~~n~g~ll~~ 211 (832)
..|.+|+|.. .+....+.-+-.. .-+.+++-++-|.+.+-.+++|++.|+++|++|.+++.+- +-.--+|-|+|+
T Consensus 379 ~lv~~g~Is~-~~ak~vl~~~~~~--~~~~~~ii~~~gl~~isd~~~l~~iv~evl~~np~~v~~~k~Gk~k~~~~lvGq 455 (478)
T TIGR00133 379 KLIKEGKISG-KSAKQLIEEMLEN--GGDPSKLIEELGLEQISDEKELIKIIEEVIKENPKEVEKYLSGKERALKFLVGQ 455 (478)
T ss_pred HHHHcCCCcH-HHHHHHHHHHHhc--CCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHCHHHHHHHHcccHHHHHHHHHH
Confidence 9999999986 5556666655443 2578899999999865555589999999999998877761 222257788888
Q ss_pred HHh-hCCCCChhhhHHHHHHH
Q psy17575 212 VRT-LLKWADGKYIKSEVDVQ 231 (832)
Q Consensus 212 vR~-~LkWAd~k~vK~~vD~~ 231 (832)
|=+ .=-=|||+.|.+.+.+.
T Consensus 456 vMk~t~GkA~p~~v~~~l~~~ 476 (478)
T TIGR00133 456 VMKRTRGRANPQLVNEILKEM 476 (478)
T ss_pred HHHHhCCCCCHHHHHHHHHHH
Confidence 744 45569999999887654
No 84
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.62 E-value=0.0019 Score=79.11 Aligned_cols=92 Identities=30% Similarity=0.433 Sum_probs=64.7
Q ss_pred EEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEE---eccC-------------CCcccccHHHHHHHHHHHHHcC
Q psy17575 321 RTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFL---RYDD-------------TNPEKEEEKFFTGIKDMVQWLG 382 (832)
Q Consensus 321 ~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iL---RiDD-------------TDp~r~~~e~~~~I~edL~WLG 382 (832)
++=-=|-|||.||+||.|+..+.-.+||. ..|.=+| =+|= +||..-...+++.+.++|+.||
T Consensus 38 vl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~qlk~lG 117 (814)
T COG0495 38 VLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSLG 117 (814)
T ss_pred EEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCCChHHHHHHHHHHHHHHHHHhC
Confidence 34444999999999999999999888874 3343333 2332 2666667889999999999999
Q ss_pred CC--cCcccccchhHHHHHHHH----HHHHHcCCcccc
Q psy17575 383 YK--PYQITHSSDYFHQLYEWA----VKLIKKGLAYVC 414 (832)
Q Consensus 383 l~--pd~~~~qSd~~~~~ye~A----~~Li~~G~AY~C 414 (832)
+. |++...+.| ..||.+. .+|.++|++|.-
T Consensus 118 ~siDW~Ref~T~D--p~Yyk~~QW~F~kL~ekGL~y~~ 153 (814)
T COG0495 118 FSIDWRREFATCD--PEYYKWIQWQFLKLYEKGLAYRK 153 (814)
T ss_pred CccccccceecCC--ccHHHHHHHHHHHHHHCCCEEec
Confidence 75 554433333 2245443 479999999975
No 85
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=96.54 E-value=0.0048 Score=77.33 Aligned_cols=93 Identities=20% Similarity=0.130 Sum_probs=63.8
Q ss_pred EEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEecc----------------------CCCccc-------ccHH
Q psy17575 321 RTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYD----------------------DTNPEK-------EEEK 369 (832)
Q Consensus 321 ~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiD----------------------DTDp~r-------~~~e 369 (832)
++==||.+||.||||||++.++--.+||. ..|.-++.+= +++++. -..+
T Consensus 53 i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~~~ 132 (912)
T PRK05743 53 LHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYALE 132 (912)
T ss_pred EeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHHHH
Confidence 33447999999999999999998888865 3455554332 333332 2345
Q ss_pred HHHHHHHHHHHcCC--CcCcccccch--hHHHHHHHHHHHHHcCCccc
Q psy17575 370 FFTGIKDMVQWLGY--KPYQITHSSD--YFHQLYEWAVKLIKKGLAYV 413 (832)
Q Consensus 370 ~~~~I~edL~WLGl--~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~ 413 (832)
+.+.+.++++.||+ +|+..+...+ |.........+|.++|+.|.
T Consensus 133 ~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy~ 180 (912)
T PRK05743 133 QVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYK 180 (912)
T ss_pred HHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 67899999999999 7876554443 22222334457999999887
No 86
>PLN02563 aminoacyl-tRNA ligase
Probab=96.50 E-value=0.0061 Score=76.58 Aligned_cols=95 Identities=22% Similarity=0.303 Sum_probs=67.1
Q ss_pred eEEeeCCCCCCc-CchHHHHHHHHHHHHHHh--cCCEEEEeccCCC----------------cccccHHHHHHHHHHHHH
Q psy17575 320 VRTRFPPEPNGI-LHIGHAKAININFGYAAA--HNGICFLRYDDTN----------------PEKEEEKFFTGIKDMVQW 380 (832)
Q Consensus 320 v~tRFaPsPtG~-LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTD----------------p~r~~~e~~~~I~edL~W 380 (832)
+++=-+|-|||. |||||+++.++...+||. ..|.-+|.+=-+| |.....++++.+.+.++.
T Consensus 113 ~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~~ 192 (963)
T PLN02563 113 YVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKS 192 (963)
T ss_pred EEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHHH
Confidence 455556999996 999999999999988875 4566666655444 222345788999999999
Q ss_pred cCC--CcCcccccch--hHHHHHHHHHHHHHcCCcccc
Q psy17575 381 LGY--KPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC 414 (832)
Q Consensus 381 LGl--~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C 414 (832)
||+ +|+..+..++ |...-+....+|.++|++|.-
T Consensus 193 lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~~ 230 (963)
T PLN02563 193 LGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQA 230 (963)
T ss_pred hCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEee
Confidence 995 5665544443 332223344579999999964
No 87
>PLN02751 glutamyl-tRNA(Gln) amidotransferase
Probab=96.48 E-value=0.047 Score=64.60 Aligned_cols=160 Identities=16% Similarity=0.212 Sum_probs=114.7
Q ss_pred HHHHHHHhCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHH-HHHhhccC---------CCccchHHHH
Q psy17575 64 SMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLY-HLASKIKS---------QSSIHLPLLV 133 (832)
Q Consensus 64 ~l~~lF~~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy-~lAtk~k~---------~~~~~r~~l~ 133 (832)
+..+.|...||++.-|.-++.++.++.-+.+++.. +. -++..++.|. .|...++. -..++...|+
T Consensus 368 ~~~~Rl~~~gLs~~dA~~L~~~~~~a~ffe~~~~~-~~----~~k~~anwi~~el~~~l~~~~~~i~~~~l~p~~laeLi 442 (544)
T PLN02751 368 AKRRRYENMGLSMQDVLFLANDKNVAEFFDATLAK-GA----DAKLAANWIMGDIAAYLKNEKVSISEIKLTPKELAELI 442 (544)
T ss_pred HHHHHHHHcCCCHHHHHHHHcCcHHHHHHHHHHHc-CC----CHHHHHHHHHHHHHHHHHhCCCChhhcCCCHHHHHHHH
Confidence 35566788999999999999999999888877653 21 2455554433 34333322 1246789999
Q ss_pred HHHHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcc---cccchhhhHH
Q psy17575 134 KYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKR---YRYNLGLVMQ 210 (832)
Q Consensus 134 ~~I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~r---y~~n~g~ll~ 210 (832)
..|.+|+|....- ...+.=+-.. .-+.++.-++-|.+..-.+++|+++|+++|++|.+.+.+-| -+ -+|-|||
T Consensus 443 ~li~~g~Is~~~A-K~vl~~~~~~--~~~p~~iiee~gL~qisD~~~l~~iv~evi~~np~~V~~~k~Gk~k-~~g~lvG 518 (544)
T PLN02751 443 ASIKDGTISGKIG-KEILPELLAK--GGTVKGLVEEKGLVQISDPAEIEAMVDKVLEENPKQLEQYRGGKTK-LQGFFAG 518 (544)
T ss_pred HHHHcCCccHHHH-HHHHHHHHhC--CCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHCHHHHHHHHcccHH-HHHHHHH
Confidence 9999999987443 4444433322 25788999999998654588999999999999999876644 23 4788888
Q ss_pred HHHhhCC-CCChhhhHHHHHHHH
Q psy17575 211 EVRTLLK-WADGKYIKSEVDVQV 232 (832)
Q Consensus 211 ~vR~~Lk-WAd~k~vK~~vD~~~ 232 (832)
+|-+..+ =|||+.|...+.+.+
T Consensus 519 qVMK~tkGkAnp~~v~~iL~e~L 541 (544)
T PLN02751 519 QVMKASKGKANPGLLNKILMEKL 541 (544)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHh
Confidence 8855444 599999999887654
No 88
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=96.46 E-value=0.0061 Score=77.09 Aligned_cols=95 Identities=26% Similarity=0.235 Sum_probs=68.1
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCccc-------------c------------------
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNPEK-------------E------------------ 366 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp~r-------------~------------------ 366 (832)
+++==||.|||.||||||++.++--.+||. ..|.-+|.+--+|..- .
T Consensus 63 ~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~ 142 (995)
T PTZ00419 63 VIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVW 142 (995)
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHH
Confidence 344447999999999999999999888875 5677777776666320 0
Q ss_pred --cHHHHHHHHHHHHHcCC--CcCccccc--chhHHHHHHHHHHHHHcCCcccc
Q psy17575 367 --EEKFFTGIKDMVQWLGY--KPYQITHS--SDYFHQLYEWAVKLIKKGLAYVC 414 (832)
Q Consensus 367 --~~e~~~~I~edL~WLGl--~pd~~~~q--Sd~~~~~ye~A~~Li~~G~AY~C 414 (832)
..++.+.|.++++.||+ +|+..++. .+|....+....+|.++|+.|..
T Consensus 143 ~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~ 196 (995)
T PTZ00419 143 EWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRD 196 (995)
T ss_pred HHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 25678889999999995 56554433 33444444555689999999875
No 89
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.43 E-value=0.0098 Score=64.50 Aligned_cols=205 Identities=15% Similarity=0.138 Sum_probs=120.3
Q ss_pred CCCC-cCchHHHHHHHHHHHHHHhcCCEEEEeccCC-----Ccc-----c------ccHHHHHHHHHHHHHcCCC--cC-
Q psy17575 327 EPNG-ILHIGHAKAININFGYAAAHNGICFLRYDDT-----NPE-----K------EEEKFFTGIKDMVQWLGYK--PY- 386 (832)
Q Consensus 327 sPtG-~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-----Dp~-----r------~~~e~~~~I~edL~WLGl~--pd- 386 (832)
.||| .|||||...++ ++..-...|..+++=|=|. ||. | +.......|..++..+|+. |+
T Consensus 8 ~PTg~~lHLG~~~~~~-~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g~~~~p~k 86 (269)
T cd00805 8 DPTAPSLHLGHLVPLM-KLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAILDFIPPEK 86 (269)
T ss_pred CCCCCcccHHHHHHHH-HHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHccCCCcc
Confidence 4789 99999999765 5544455576766666662 442 1 2345667788899999986 76
Q ss_pred -cccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEeccc
Q psy17575 387 -QITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLE 465 (832)
Q Consensus 387 -~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~ 465 (832)
.+..||+..+. .+...+++ +-|+|+-.++.+... |.+..+. ..+. +
T Consensus 87 ~~i~~~s~~~~~--l~~~~~l~----l~~~~~~~~l~~~~~----------------~k~r~~~--~~~~-------~-- 133 (269)
T cd00805 87 AKFVNNSDWLLS--LYTLDFLR----LGKHFTVNRMLRRDA----------------VKVRLEE--EEGI-------S-- 133 (269)
T ss_pred eEEEEchHhhcc--CCHHHHHH----HHhhCcHHHHHHHHH----------------HHHHHhc--CCCC-------c--
Confidence 57889987664 12233332 558888888875311 1000000 0000 0
Q ss_pred CCCCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCccccccc-C
Q psy17575 466 EGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRL-N 544 (832)
Q Consensus 466 ~~~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL-~ 544 (832)
.+ -.+||..+=|.. ...+.++++.|.|-..+-..-.-+.+.++...|+......| .
T Consensus 134 ------------------~~--~~~YP~lQaaDi---~~l~~~l~~~G~DQ~~~i~~~rd~a~r~~~~~~~~l~~~ll~~ 190 (269)
T cd00805 134 ------------------FS--EFIYPLLQAYDF---VYLDVDLQLGGSDQRGNITLGRDLIRKLGYKKVVGLTTPLLTG 190 (269)
T ss_pred ------------------HH--HHHHHHHHHhhH---HHHhCCeeEecHHHHHHHHHHHHHHHHhCCCCcEEEeeccccC
Confidence 00 011443322211 12455899999998777666677778888777765444444 4
Q ss_pred CCCcccchhHHHHh-hhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhC
Q psy17575 545 VNYTVVSKRKIAKL-IEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMG 596 (832)
Q Consensus 545 l~gtkLSKRk~~~l-v~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG 596 (832)
++|.||||+..... | .--|+|. ++...-++-+++ .+.+|+..+-
T Consensus 191 l~G~KMSKS~~~~~~i-----~l~dsp~--~i~~Ki~~a~~~-~v~~~l~~~~ 235 (269)
T cd00805 191 LDGGKMSKSEGNAIWD-----PVLDSPY--DVYQKIRNAFDP-DVLEFLKLFT 235 (269)
T ss_pred CCCCcccCCCCCcccc-----cCCCCHH--HHHHHHHcCCcH-HHHHHHHHHH
Confidence 67999999985432 1 1224443 566666667777 4466666554
No 90
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=96.42 E-value=0.0077 Score=75.11 Aligned_cols=94 Identities=21% Similarity=0.130 Sum_probs=66.0
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCC-----------------------cc----------
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTN-----------------------PE---------- 364 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTD-----------------------p~---------- 364 (832)
+++==||.|||.|||||+++..+--.+||. ..|.-+|++=-.| +.
T Consensus 39 ~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~ 118 (861)
T TIGR00392 39 IFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCR 118 (861)
T ss_pred EEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHH
Confidence 455568999999999999999999888875 4566665543332 21
Q ss_pred cccHHHHHHHHHHHHHcCC--CcCcccccchhHHHHHHH----HHHHHHcCCccccC
Q psy17575 365 KEEEKFFTGIKDMVQWLGY--KPYQITHSSDYFHQLYEW----AVKLIKKGLAYVCH 415 (832)
Q Consensus 365 r~~~e~~~~I~edL~WLGl--~pd~~~~qSd~~~~~ye~----A~~Li~~G~AY~C~ 415 (832)
.-..++.+.+.++++.||+ +|+..+...+ ..|++. ..+|.++|++|...
T Consensus 119 ~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~--p~y~~~~~~~f~~l~~~gliyr~~ 173 (861)
T TIGR00392 119 EFALKQIEEQREQFQRLGVWGDWENPYKTMD--PSYEESQWWLFKEAHEKGLLYRGL 173 (861)
T ss_pred HHHHHHHHHHHHHHHHhCceecCCCCcCcCC--HHHHHHHHHHHHHHHHCCCEeecc
Confidence 1123578889999999998 6776655444 333333 34799999999764
No 91
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=96.41 E-value=0.0073 Score=75.46 Aligned_cols=90 Identities=26% Similarity=0.279 Sum_probs=64.2
Q ss_pred CCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCcc------------------cc--------------cHHH
Q psy17575 325 PPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNPE------------------KE--------------EEKF 370 (832)
Q Consensus 325 aPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp~------------------r~--------------~~e~ 370 (832)
||.+||.|||||+.+..+--.+||. ..|.-+|.+--||.. +. ..++
T Consensus 44 pP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~w~~~~ 123 (874)
T PRK05729 44 PPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEES 123 (874)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHHHHHHH
Confidence 7999999999999999998888875 457777766666632 00 3567
Q ss_pred HHHHHHHHHHcCC--CcCcccccch--hHHHHHHHHHHHHHcCCcccc
Q psy17575 371 FTGIKDMVQWLGY--KPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC 414 (832)
Q Consensus 371 ~~~I~edL~WLGl--~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C 414 (832)
...|.++++.||+ +|++.++..| +.........+|.++|+.|.-
T Consensus 124 ~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~ 171 (874)
T PRK05729 124 GGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRG 171 (874)
T ss_pred HHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEeec
Confidence 8899999999996 4555544443 222223334579999998864
No 92
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=96.33 E-value=0.009 Score=74.51 Aligned_cols=90 Identities=31% Similarity=0.326 Sum_probs=64.2
Q ss_pred CCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCcc------------------cc--------------cHHH
Q psy17575 325 PPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNPE------------------KE--------------EEKF 370 (832)
Q Consensus 325 aPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp~------------------r~--------------~~e~ 370 (832)
||.+||.|||||+++.++--.+||- ..|.-+|++--+|.. +. ..+|
T Consensus 41 pPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~~~~~ 120 (861)
T TIGR00422 41 PPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEES 120 (861)
T ss_pred CCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHHHHHH
Confidence 7999999999999999999888875 567777777666632 00 3467
Q ss_pred HHHHHHHHHHcCC--CcCcccccch--hHHHHHHHHHHHHHcCCcccc
Q psy17575 371 FTGIKDMVQWLGY--KPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC 414 (832)
Q Consensus 371 ~~~I~edL~WLGl--~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C 414 (832)
...|.++++.||+ +|+..++..| |.........+|.++|+.|..
T Consensus 121 ~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~ 168 (861)
T TIGR00422 121 GGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYRG 168 (861)
T ss_pred HHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHHCCCeeec
Confidence 8899999999995 4555444443 222222334479999999875
No 93
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=96.28 E-value=0.009 Score=75.91 Aligned_cols=94 Identities=24% Similarity=0.240 Sum_probs=64.5
Q ss_pred EEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCcc---------c------------------------
Q psy17575 321 RTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNPE---------K------------------------ 365 (832)
Q Consensus 321 ~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp~---------r------------------------ 365 (832)
++==||.+||.|||||+++.++--.+||. ..|.-+|.+--+|.- +
T Consensus 52 i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~ 131 (1052)
T PRK14900 52 IVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVWA 131 (1052)
T ss_pred EecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHH
Confidence 33347999999999999999999888875 456666655555421 0
Q ss_pred ccHHHHHHHHHHHHHcCC--CcCcccccch--hHHHHHHHHHHHHHcCCcccc
Q psy17575 366 EEEKFFTGIKDMVQWLGY--KPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC 414 (832)
Q Consensus 366 ~~~e~~~~I~edL~WLGl--~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C 414 (832)
-..++.+.|.++++.||+ +|+..++..+ |.........+|.++|+.|..
T Consensus 132 ~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr~ 184 (1052)
T PRK14900 132 WKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYRE 184 (1052)
T ss_pred HHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 024567889999999995 5655443333 333333444579999999974
No 94
>PLN02843 isoleucyl-tRNA synthetase
Probab=96.28 E-value=0.0087 Score=75.52 Aligned_cols=92 Identities=21% Similarity=0.126 Sum_probs=62.0
Q ss_pred eeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCC-----------------------cccc-------cHHH
Q psy17575 323 RFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTN-----------------------PEKE-------EEKF 370 (832)
Q Consensus 323 RFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTD-----------------------p~r~-------~~e~ 370 (832)
==||.+||.||||||.+.++--.++|. ..|.-++.+--+| |..- ..++
T Consensus 38 ~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~~~~ 117 (974)
T PLN02843 38 DGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFAKKT 117 (974)
T ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHH
Confidence 347999999999999999998888875 3455444433332 2211 3456
Q ss_pred HHHHHHHHHHcCC--CcCcccccch-hHH-HHHHHHHHHHHcCCcccc
Q psy17575 371 FTGIKDMVQWLGY--KPYQITHSSD-YFH-QLYEWAVKLIKKGLAYVC 414 (832)
Q Consensus 371 ~~~I~edL~WLGl--~pd~~~~qSd-~~~-~~ye~A~~Li~~G~AY~C 414 (832)
.+.+.++++.||+ +|+..+...+ .+. .......+|.++|+.|.-
T Consensus 118 ~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~GlIyr~ 165 (974)
T PLN02843 118 VDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYRG 165 (974)
T ss_pred HHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 7788999999998 7876655443 222 222334479999999863
No 95
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.27 E-value=0.012 Score=65.03 Aligned_cols=90 Identities=22% Similarity=0.277 Sum_probs=69.5
Q ss_pred CCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC-------Cc-ccccHHHHHHHHHHHHHcCCCcCc--ccccchhHH
Q psy17575 327 EPNGILHIGHAKAININFGYAAAHNGICFLRYDDT-------NP-EKEEEKFFTGIKDMVQWLGYKPYQ--ITHSSDYFH 396 (832)
Q Consensus 327 sPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-------Dp-~r~~~e~~~~I~edL~WLGl~pd~--~~~qSd~~~ 396 (832)
-|||.|||||--.|+.||...+..++.|+.=|-|. ++ +.....+...+..++-.+||+|++ ++.||+.-+
T Consensus 13 ~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~~if~QS~v~e 92 (314)
T COG0180 13 QPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKSTIFLQSEVPE 92 (314)
T ss_pred CCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccccEEEEccCchH
Confidence 48999999999999999999888777777777775 22 134556777777788889999995 788998654
Q ss_pred HHHHHHHHHHHcCCccccCCCHHHHhcc
Q psy17575 397 QLYEWAVKLIKKGLAYVCHQKSDEMKGF 424 (832)
Q Consensus 397 ~~ye~A~~Li~~G~AY~C~Cs~eel~~~ 424 (832)
+++.+-.|- |..+--+++++
T Consensus 93 -~~eLa~~l~-------~~~~~gel~r~ 112 (314)
T COG0180 93 -HAELAWLLS-------CVTNFGELERM 112 (314)
T ss_pred -HHHHHHHHH-------ccCcHHHHHhh
Confidence 777766543 78787788765
No 96
>PLN02943 aminoacyl-tRNA ligase
Probab=96.24 E-value=0.011 Score=74.57 Aligned_cols=95 Identities=26% Similarity=0.296 Sum_probs=67.1
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCcc-----------------------cc--------
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNPE-----------------------KE-------- 366 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp~-----------------------r~-------- 366 (832)
+++=-||.+||.|||||+++..+--.+||. ..|.-+|.+--+|.. |+
T Consensus 91 ~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~ 170 (958)
T PLN02943 91 VIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWE 170 (958)
T ss_pred EEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHH
Confidence 444557999999999999999999888875 567777666555522 11
Q ss_pred -cHHHHHHHHHHHHHcCC--CcCcccccch--hHHHHHHHHHHHHHcCCcccc
Q psy17575 367 -EEKFFTGIKDMVQWLGY--KPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC 414 (832)
Q Consensus 367 -~~e~~~~I~edL~WLGl--~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C 414 (832)
..++...|.+.++.||+ +|+..++..| |.........+|.++|+.|..
T Consensus 171 ~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~ 223 (958)
T PLN02943 171 WKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQG 223 (958)
T ss_pred HHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 13567899999999997 5666555444 222222334579999999876
No 97
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=96.03 E-value=0.013 Score=70.20 Aligned_cols=91 Identities=32% Similarity=0.287 Sum_probs=57.3
Q ss_pred eCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEec---cCC-----------------------Cccc-------ccH
Q psy17575 324 FPPEPNGILHIGHAKAININFGYAAA--HNGICFLRY---DDT-----------------------NPEK-------EEE 368 (832)
Q Consensus 324 FaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRi---DDT-----------------------Dp~r-------~~~ 368 (832)
=||.+||.||+||+++..+--.+||. -.|.-++.. |.+ .++. -..
T Consensus 30 ~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (601)
T PF00133_consen 30 PPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGREEFREECREWAE 109 (601)
T ss_dssp ---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHHHHHHHHHHHHH
T ss_pred CCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccccchhhhcchhh
Confidence 47999999999999999999888865 456655532 222 1110 134
Q ss_pred HHHHHHHHHHHHcCC--CcCcccccch--hHHHHHHHHHHHHHcCCcccc
Q psy17575 369 KFFTGIKDMVQWLGY--KPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC 414 (832)
Q Consensus 369 e~~~~I~edL~WLGl--~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C 414 (832)
++.+.|.++++.||+ +|+..+...+ |.........+|.++|+.|.-
T Consensus 110 ~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~ 159 (601)
T PF00133_consen 110 EFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRG 159 (601)
T ss_dssp HHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred hhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEee
Confidence 677889999999996 5666544433 222233334579999999974
No 98
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.92 E-value=0.025 Score=69.75 Aligned_cols=90 Identities=28% Similarity=0.317 Sum_probs=65.2
Q ss_pred CCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCcc-----------------------cc---------cHHH
Q psy17575 325 PPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNPE-----------------------KE---------EEKF 370 (832)
Q Consensus 325 aPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp~-----------------------r~---------~~e~ 370 (832)
||.+||-||||||....+--.++|. -.|.-+|=+--||.. |+ ++++
T Consensus 41 PPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~ 120 (877)
T COG0525 41 PPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEES 120 (877)
T ss_pred CCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHH
Confidence 6999999999999999988888875 457666655555532 21 3678
Q ss_pred HHHHHHHHHHcCCC--cCcccccch--hHHHHHHHHHHHHHcCCcccc
Q psy17575 371 FTGIKDMVQWLGYK--PYQITHSSD--YFHQLYEWAVKLIKKGLAYVC 414 (832)
Q Consensus 371 ~~~I~edL~WLGl~--pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C 414 (832)
...|.+.++.||+. |+..++..| +.....+...+|.++|..|+-
T Consensus 121 ~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr~ 168 (877)
T COG0525 121 GGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRG 168 (877)
T ss_pred HHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCceeec
Confidence 88999999999976 444433333 333444556689999999985
No 99
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=95.89 E-value=0.012 Score=74.21 Aligned_cols=95 Identities=26% Similarity=0.294 Sum_probs=59.6
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEe---ccCC----------------------------C----
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLR---YDDT----------------------------N---- 362 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLR---iDDT----------------------------D---- 362 (832)
+++==+|.|||.|||||+++.++--.+||. ..|.=+|. +|.| .
T Consensus 28 ~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~~~~~~~~~~~i~~~~i 107 (938)
T TIGR00395 28 FLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHAIPREEL 107 (938)
T ss_pred EEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhhhhccccchhhccCCHHHH
Confidence 334446999999999999999998877764 33444443 2222 1
Q ss_pred -----cccccHHHHHHHHHHHHHcCCC--cCcccccch-hHHHHHH-HHHHHHHcCCcccc
Q psy17575 363 -----PEKEEEKFFTGIKDMVQWLGYK--PYQITHSSD-YFHQLYE-WAVKLIKKGLAYVC 414 (832)
Q Consensus 363 -----p~r~~~e~~~~I~edL~WLGl~--pd~~~~qSd-~~~~~ye-~A~~Li~~G~AY~C 414 (832)
|..-...|...|.++++.||+. |++.+...+ ++...-+ ...+|.++|+.|.-
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~e~G~iy~g 168 (938)
T TIGR00395 108 LKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVKG 168 (938)
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHHHCCCEecC
Confidence 1111245566899999999975 555443333 2222222 23479999999864
No 100
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=95.82 E-value=0.029 Score=51.91 Aligned_cols=40 Identities=53% Similarity=0.815 Sum_probs=30.6
Q ss_pred EeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccc
Q psy17575 322 TRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKE 366 (832)
Q Consensus 322 tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~ 366 (832)
+.|++++ |++|+||...+-- |...+.++++.|.|.++...
T Consensus 2 ~~~~G~F-dp~H~GH~~l~~~----a~~~~d~~i~~i~~~~~~~~ 41 (105)
T cd02156 2 ARFPGEP-GYLHIGHAKLICR----AKGIADQCVVRIDDNPPVKV 41 (105)
T ss_pred EEeCCCC-CCCCHHHHHHHHH----HHHhCCcEEEEEcCCCcccc
Confidence 5789999 9999999997433 33334789999999887653
No 101
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=95.78 E-value=0.0066 Score=66.15 Aligned_cols=174 Identities=16% Similarity=0.124 Sum_probs=99.0
Q ss_pred CCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC-----Ccc----cccHHHHHHHHHH--HHHcCCCcC--cccccch
Q psy17575 327 EPNGILHIGHAKAININFGYAAAHNGICFLRYDDT-----NPE----KEEEKFFTGIKDM--VQWLGYKPY--QITHSSD 393 (832)
Q Consensus 327 sPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-----Dp~----r~~~e~~~~I~ed--L~WLGl~pd--~~~~qSd 393 (832)
.|||.|||||+-+. .++..-...|..+++=|-|. |+. |........+.++ +-.+|++|+ .+..||+
T Consensus 13 ~PTg~lHlG~l~~~-~~~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~~k~~i~~~s~ 91 (292)
T PF00579_consen 13 DPTGDLHLGHLVPI-MKLIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDPEKTEIFRQSD 91 (292)
T ss_dssp ESSSS-BHHHHHHH-HHHHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHTTTEEEEEGHH
T ss_pred CCCCcccchHHHHH-HHHHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCccceEEEeCCC
Confidence 47899999988766 44555555888888877664 333 3334455555555 668899997 5788998
Q ss_pred hHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCCCCCceE
Q psy17575 394 YFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVA 473 (832)
Q Consensus 394 ~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~~~D~V~ 473 (832)
..... ++...|.. .++.-++.++ ..+..+ ..++.+++.. +
T Consensus 92 ~~~~~-~~~~~l~~-------~~~~~~l~~~----------------~~~~~~-~~~~~~~~~~-----~---------- 131 (292)
T PF00579_consen 92 WPEHM-ELWWFLSD-------VARLFSLNRM----------------LRFKDV-KKRLKNGEGI-----S---------- 131 (292)
T ss_dssp HHCHH-HHHHHHHH-------HHBHHHHHHH----------------HHHHHH-HHHHSSTTTS-----B----------
T ss_pred ccccc-chhhhhcc-------cccccchhhh----------------hhhccc-ccccccccCc-----c----------
Confidence 76443 55544442 2232233321 111111 0111111000 0
Q ss_pred EEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCC----CCCcccccccC-CCCc
Q psy17575 474 YRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIY----CPVQWEYGRLN-VNYT 548 (832)
Q Consensus 474 ~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~----~P~~~ef~hL~-l~gt 548 (832)
. ...+||..+ +.|=...+.++++.|.|-..+-..-.-+.+.++.. .|.......|+ ++|+
T Consensus 132 ----------~--~~~~Yp~lQ---aaD~~~l~~~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~ 196 (292)
T PF00579_consen 132 ----------L--GEFSYPLLQ---AADILLLKADLVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQ 196 (292)
T ss_dssp ----------H--HHHHHHHHH---HHHHHHTTHSEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSS
T ss_pred ----------e--eeEEccccc---ccceeeeccccccccchHHHHHHHHHHHHhhhcccccccCchheeeccccccCCc
Confidence 0 012355544 23333456679999999876655555677778876 77655555554 4788
Q ss_pred -ccchhHHH
Q psy17575 549 -VVSKRKIA 556 (832)
Q Consensus 549 -kLSKRk~~ 556 (832)
||||+..+
T Consensus 197 ~KMSKS~~n 205 (292)
T PF00579_consen 197 KKMSKSDPN 205 (292)
T ss_dssp SBTTTTTTG
T ss_pred cccCccCCc
Confidence 99999876
No 102
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=95.77 E-value=0.02 Score=72.34 Aligned_cols=91 Identities=21% Similarity=0.211 Sum_probs=64.5
Q ss_pred eeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCcc---------------------------------ccc
Q psy17575 323 RFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNPE---------------------------------KEE 367 (832)
Q Consensus 323 RFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp~---------------------------------r~~ 367 (832)
==||.|||.||+||+++..+--.+||. ..|.-+++.=-.|-. .-.
T Consensus 47 ~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~ 126 (975)
T PRK06039 47 DGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESV 126 (975)
T ss_pred CCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHH
Confidence 337999999999999999999888875 456666654433210 123
Q ss_pred HHHHHHHHHHHHHcC--CCcCcccccchhHHHHHHH----HHHHHHcCCccccC
Q psy17575 368 EKFFTGIKDMVQWLG--YKPYQITHSSDYFHQLYEW----AVKLIKKGLAYVCH 415 (832)
Q Consensus 368 ~e~~~~I~edL~WLG--l~pd~~~~qSd~~~~~ye~----A~~Li~~G~AY~C~ 415 (832)
.+|.+.+.+.++.|| ++|+..+...+ ..|++. ..+|.++|++|...
T Consensus 127 ~~~~~~~~~~~~rlG~~~Dw~~~y~T~d--~~y~~~v~~~F~~l~~kGliyr~~ 178 (975)
T PRK06039 127 LRYTDEWEEYTERLGRWVDFDNPYKTLD--NEYMESVWWALKQLYDKGLLYKGY 178 (975)
T ss_pred HHHHHHHHHHHHHhCceeecCCCcCcCC--HHHHHHHHHHHHHHHHCCCEEecc
Confidence 467888999999999 56776655544 333333 34799999999753
No 103
>PLN02381 valyl-tRNA synthetase
Probab=95.73 E-value=0.027 Score=71.76 Aligned_cols=95 Identities=25% Similarity=0.245 Sum_probs=66.0
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCcc------------------------c--------
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNPE------------------------K-------- 365 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp~------------------------r-------- 365 (832)
+++==||.+||.|||||+++..+--.+||. ..|.-+|.+=-+|.. |
T Consensus 131 ~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~ 210 (1066)
T PLN02381 131 VIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVW 210 (1066)
T ss_pred EEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHH
Confidence 455568999999999999999999888875 456666655444421 0
Q ss_pred -ccHHHHHHHHHHHHHcCC--CcCcccccch--hHHHHHHHHHHHHHcCCcccc
Q psy17575 366 -EEEKFFTGIKDMVQWLGY--KPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC 414 (832)
Q Consensus 366 -~~~e~~~~I~edL~WLGl--~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C 414 (832)
-..+|.+.|.+.++.||+ +|+..++..+ |.........+|.++|+.|.-
T Consensus 211 ~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr~ 264 (1066)
T PLN02381 211 KWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRD 264 (1066)
T ss_pred HHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 024667889999999995 5666655554 222222334579999999976
No 104
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=95.69 E-value=0.13 Score=59.17 Aligned_cols=88 Identities=17% Similarity=0.206 Sum_probs=57.7
Q ss_pred HHHHHHhhhhcCCceEEeeCCCCCCc-CchHHHHHHHHHHHHHHhcCCEEEEeccC----C-Ccc-c----------ccH
Q psy17575 306 HDLLREHIKYTGGKVRTRFPPEPNGI-LHIGHAKAININFGYAAAHNGICFLRYDD----T-NPE-K----------EEE 368 (832)
Q Consensus 306 ~~~~~~hl~~~~~~v~tRFaPsPtG~-LHIGharaaL~n~l~Ar~~gG~~iLRiDD----T-Dp~-r----------~~~ 368 (832)
.+.|.++++ +.+.+.=..=.|||. |||||+. .+.++..-+..|.+.++=|=| | ||. | +..
T Consensus 22 ~~~l~~~l~--~~~~~vy~G~dPTg~slHlGhlv-~l~~l~~lQ~~G~~~~~ligd~ta~igDpsgk~~~r~~l~~e~i~ 98 (408)
T PRK05912 22 EEELEEKLA--KEPLRIYLGFDPTAPSLHLGHLV-PLLKLRRFQDAGHKPIALIGGFTGMIGDPSGKSETRKLLTREQVA 98 (408)
T ss_pred HHHHHHHhh--CCCCEEEEeecCCCCCccHHhHH-HHHHHHHHHHCCCcEEEEEcCceeEcCCCCCCchhhccCCHHHHH
Confidence 556667776 333433344457895 9999998 577777777777777776655 3 454 2 123
Q ss_pred HHHHHHHHHHHHcCCCcCc----ccccchhHHH
Q psy17575 369 KFFTGIKDMVQWLGYKPYQ----ITHSSDYFHQ 397 (832)
Q Consensus 369 e~~~~I~edL~WLGl~pd~----~~~qSd~~~~ 397 (832)
.+.+.|.+.+ +.|++|++ +..||+.+..
T Consensus 99 ~n~~~i~~ql-~~~ld~~k~~~~i~~nsd~~~~ 130 (408)
T PRK05912 99 ENAETIKEQL-FKFLDFEKDGAEIVNNSDWLGK 130 (408)
T ss_pred HHHHHHHHHH-HHhcCcCcCcEEEEECCCcCCc
Confidence 4555565555 77888875 7889987653
No 105
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=95.67 E-value=0.2 Score=57.69 Aligned_cols=89 Identities=17% Similarity=0.244 Sum_probs=55.7
Q ss_pred HHHHHHhhhhcCCceEEeeCCCCCCc-CchHHHHHHHHHHHHHHhcCCEEEEeccC-C----Ccc-----c------ccH
Q psy17575 306 HDLLREHIKYTGGKVRTRFPPEPNGI-LHIGHAKAININFGYAAAHNGICFLRYDD-T----NPE-----K------EEE 368 (832)
Q Consensus 306 ~~~~~~hl~~~~~~v~tRFaPsPtG~-LHIGharaaL~n~l~Ar~~gG~~iLRiDD-T----Dp~-----r------~~~ 368 (832)
.+.|.+++. .+++++.=..=.|||. |||||+-. +..+..-+..|.+.++=|-| | ||. | +..
T Consensus 21 ~~~l~~~~~-~~~~~~iy~G~dPT~~sLHlGhlv~-l~~l~~lq~~G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i~ 98 (410)
T PRK13354 21 EEKLRKSLK-EGKPLTLYLGFDPTAPSLHIGHLVP-LMKLKRFQDAGHRPVILIGGFTGKIGDPSGKSKERKLLTDEQVQ 98 (410)
T ss_pred HHHHHHHHh-cCCCcEEEEcccCCCCCcchhhHHH-HHHHHHHHHcCCeEEEEEcccccccCCCCcccccccCCCHHHHH
Confidence 555666543 3445555556678984 99999666 55566666777777666632 3 554 2 233
Q ss_pred HHHHHHHHHHHHcCCCcC--cccccchhHHH
Q psy17575 369 KFFTGIKDMVQWLGYKPY--QITHSSDYFHQ 397 (832)
Q Consensus 369 e~~~~I~edL~WLGl~pd--~~~~qSd~~~~ 397 (832)
++...|...+.. |++++ .+..+|+.+..
T Consensus 99 ~n~~~i~~q~~~-~ld~~k~~i~~ns~w~~~ 128 (410)
T PRK13354 99 HNAKTYTEQIFK-LFDFEKTEIVNNSDWLSK 128 (410)
T ss_pred HHHHHHHHHHHH-hcCccceEEEECcccccc
Confidence 556666666544 77766 56788887653
No 106
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=95.58 E-value=0.028 Score=72.29 Aligned_cols=90 Identities=19% Similarity=0.150 Sum_probs=65.5
Q ss_pred CCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCcc------------------------c---------ccHH
Q psy17575 325 PPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNPE------------------------K---------EEEK 369 (832)
Q Consensus 325 aPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp~------------------------r---------~~~e 369 (832)
||.+||.||+|||.+-.+--.+||. ..|.-+++.--+|-. + -..+
T Consensus 110 PPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~~ 189 (1205)
T PTZ00427 110 PPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLK 189 (1205)
T ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHHH
Confidence 6999999999999999999888875 467777777666521 0 0235
Q ss_pred HHHHHHHHHHHcC--CCcCcccccch--hHHHHHHHHHHHHHcCCcccc
Q psy17575 370 FFTGIKDMVQWLG--YKPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC 414 (832)
Q Consensus 370 ~~~~I~edL~WLG--l~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C 414 (832)
|.+.+.+.++.|| ++|+..+...+ |.........+|.++|+.|.-
T Consensus 190 ~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~L~ekGlIYr~ 238 (1205)
T PTZ00427 190 YSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYKS 238 (1205)
T ss_pred HHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 6778899999999 78887655544 333333334579999999864
No 107
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=95.58 E-value=0.016 Score=64.78 Aligned_cols=88 Identities=22% Similarity=0.200 Sum_probs=53.6
Q ss_pred CCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC----Ccc--cccHHHHHHHHHHHHHcCCCcC--cccccchhHHHH
Q psy17575 327 EPNGILHIGHAKAININFGYAAAHNGICFLRYDDT----NPE--KEEEKFFTGIKDMVQWLGYKPY--QITHSSDYFHQL 398 (832)
Q Consensus 327 sPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT----Dp~--r~~~e~~~~I~edL~WLGl~pd--~~~~qSd~~~~~ 398 (832)
.|||.|||||...++-+|..-+.. ..+++=|-|. ++. .+..++...+..++-.+|++|+ .+..||+..+ +
T Consensus 9 ~PTG~lHLG~~~g~~~~~~~lQ~~-~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~qS~~~~-~ 86 (333)
T PRK00927 9 QPTGKLHLGNYLGAIKNWVELQDE-YECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKSTIFVQSHVPE-H 86 (333)
T ss_pred CCCccchHHhHHHHHHHHHHHHhc-CCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhheEEEEeCCCch-h
Confidence 478999999999788887544432 3444444432 221 1233455566777778999998 4678998543 4
Q ss_pred HHHHHHHHHcCCccccCCCHHHHhc
Q psy17575 399 YEWAVKLIKKGLAYVCHQKSDEMKG 423 (832)
Q Consensus 399 ye~A~~Li~~G~AY~C~Cs~eel~~ 423 (832)
.+++-. ..|..+-.++++
T Consensus 87 ~el~~~-------l~~~~~~~~l~r 104 (333)
T PRK00927 87 AELAWI-------LNCITPLGELER 104 (333)
T ss_pred HHHHHH-------HHhhhhHHHHHh
Confidence 444433 245555555543
No 108
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=95.57 E-value=0.022 Score=71.84 Aligned_cols=95 Identities=19% Similarity=0.071 Sum_probs=62.1
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCC-------------------------ccc-------
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTN-------------------------PEK------- 365 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTD-------------------------p~r------- 365 (832)
++.==||.+||.||||||++-++--.+||. ..|.-++.+=-.| +..
T Consensus 57 ~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~ 136 (961)
T PRK13804 57 VLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECRE 136 (961)
T ss_pred EEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHH
Confidence 334447999999999999999998888875 3454444332222 111
Q ss_pred ccHHHHHHHHHHHHHcCCC--cCcccccch--hHHHHHHHHHHHHHcCCcccc
Q psy17575 366 EEEKFFTGIKDMVQWLGYK--PYQITHSSD--YFHQLYEWAVKLIKKGLAYVC 414 (832)
Q Consensus 366 ~~~e~~~~I~edL~WLGl~--pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C 414 (832)
-..++++.+.++++.||+- |+..+...+ |.........+|.++|++|.-
T Consensus 137 ~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l~~kGliyr~ 189 (961)
T PRK13804 137 YALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYRG 189 (961)
T ss_pred HHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeC
Confidence 1235677889999999975 766555443 222222334479999999874
No 109
>KOG0436|consensus
Probab=95.33 E-value=0.047 Score=61.95 Aligned_cols=262 Identities=20% Similarity=0.203 Sum_probs=140.9
Q ss_pred CCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCccc------------ccHHHHHHHHHHHHH----cCCCcCcc
Q psy17575 327 EPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNPEK------------EEEKFFTGIKDMVQW----LGYKPYQI 388 (832)
Q Consensus 327 sPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp~r------------~~~e~~~~I~edL~W----LGl~pd~~ 388 (832)
-||-..||||+.++++.-.+||. ..|.-..=..-||.-- .-++..+.|-....- +|+..++.
T Consensus 49 YvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~gi~yt~F 128 (578)
T KOG0436|consen 49 YVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDAGIAYTKF 128 (578)
T ss_pred ecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHhCcchhhe
Confidence 36788999999999999999986 5688777777787432 234555555554444 47776654
Q ss_pred cccch--hHHHHHHHHHHHHHcCCcccc------------CCCHHHHhccCCC-----------CCCCCCCChhHh----
Q psy17575 389 THSSD--YFHQLYEWAVKLIKKGLAYVC------------HQKSDEMKGFNPL-----------PSPWRERPVEEN---- 439 (832)
Q Consensus 389 ~~qSd--~~~~~ye~A~~Li~~G~AY~C------------~Cs~eel~~~~~~-----------~~~~R~r~~ee~---- 439 (832)
....| +.....++-..+.++|..|.- |-+..++.+...+ ++.||. |+|
T Consensus 129 IRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~vv~~k---E~NY~Fr 205 (578)
T KOG0436|consen 129 IRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPVVWRK---EDNYFFR 205 (578)
T ss_pred eecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCCCceeeeccCCceeEec---ccceeee
Confidence 33333 333445555667888988852 2233333322111 112221 111
Q ss_pred HHHHHHHHcCcccCCCceEEEEec----------ccCCCCCceEEEeeeC-----CCCCCCCc-eeE-------------
Q psy17575 440 VKLFEAMKNGLIDEGEATLRMKIT----------LEEGKQDPVAYRIKFL-----PHHRTGDS-WCI------------- 490 (832)
Q Consensus 440 L~~f~~m~~g~~~~g~~~lR~K~~----------~~~~~~D~V~~Ri~~~-----~h~r~gd~-~~i------------- 490 (832)
|..|++-....+...+ ||-.| ...+..|+-+-|-+.. |-| ||+ -.|
T Consensus 206 LSkfqk~l~d~lrkNP---~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP--~ddsQtIYVWfDAL~nYiSv 280 (578)
T KOG0436|consen 206 LSKFQKPLEDHLRKNP---RFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVP--GDDSQTIYVWFDALLNYISV 280 (578)
T ss_pred HHhhhhHHHHHHhcCC---CccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCC--CCCcceEEEeHHHHhhHHHh
Confidence 2333332222222211 01111 0112345544442110 111 221 111
Q ss_pred --eec--cceeeeeecCCCCcceeeecccccccchhHH-HHHHhcCCCCCCccc-ccccCCCCcccchhHHHHhhhcCcc
Q psy17575 491 --YPT--YDYTHCLCDSIEHITHSLCTKEFQSRRSSYY-WLCNALDIYCPVQWE-YGRLNVNYTVVSKRKIAKLIEENIV 564 (832)
Q Consensus 491 --~Pt--Y~fA~~VdD~l~gITHvlRg~E~~~~~~~~~-~L~~aL~~~~P~~~e-f~hL~l~gtkLSKRk~~~lv~~g~v 564 (832)
||- -++-..+.=---.-.||| |+|.+.-+..|- .+.-+.|++.|.++- .+|.-.+|.||||+-++. |
T Consensus 281 ig~~~~~~N~k~~ls~~wPat~HvI-GKDIlrFHavYWPafLmaAGlplP~~I~vHghwt~ngmKMsKSLGNv------v 353 (578)
T KOG0436|consen 281 IGYPNKQQNLKTALSFGWPATLHVI-GKDILRFHAVYWPAFLMAAGLPLPKMIFVHGHWTKNGMKMSKSLGNV------V 353 (578)
T ss_pred hcCCchhccccceeecCCCceeeeh-hhhhhhhhhhhhHHHHHhcCCCCccEEEEeeeeeecceecchhhccc------c
Confidence 221 000000000000223555 788765554442 344556898886543 578888999999998642 2
Q ss_pred CCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHH
Q psy17575 565 NDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVV 613 (832)
Q Consensus 565 ~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~ 613 (832)
||+- | -+-|.+.+++-|+..-|.-.++..++.+.|....
T Consensus 354 ----dP~~-----l-~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~ 392 (578)
T KOG0436|consen 354 ----DPFE-----L-VQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIV 392 (578)
T ss_pred ----CHHH-----H-HHHhCccceeeEeeeccccCCCCCccHHHHHHHH
Confidence 5543 1 2246788999999999998999999988876554
No 110
>COG0064 GatB Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) [Translation, ribosomal structure and biogenesis]
Probab=95.25 E-value=0.4 Score=55.91 Aligned_cols=158 Identities=16% Similarity=0.270 Sum_probs=106.8
Q ss_pred HHHH-hCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHHH-HHhhcc---------CCCccchHHHHHH
Q psy17575 67 SAFL-SVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYH-LASKIK---------SQSSIHLPLLVKY 135 (832)
Q Consensus 67 ~lF~-~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy~-lAtk~k---------~~~~~~r~~l~~~ 135 (832)
+.|. ..||++.-|.-++.++.+++-+..+..... -.+...+.+.+ |+..+. +...++..-|+..
T Consensus 308 ~r~~~~~gls~~dA~~L~~d~~la~~fe~~~~~~~-----~~k~~anW~~~el~~~Ln~~~~~i~~~~~~p~~la~Li~l 382 (483)
T COG0064 308 ERYIKEYGLSEYDARVLTSDKELADYFEEAVKAGA-----DAKLAANWLTNELLGLLNKAGITLEESPLTPEQLAELIKL 382 (483)
T ss_pred HHHHHHcCCCHHHHHHHHcCHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHHhcCCChhhcCCCHHHHHHHHHH
Confidence 3444 799999999999999999988876632211 13444443322 222222 1224678999999
Q ss_pred HHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhccc--ccchhhhHHHH-
Q psy17575 136 IVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRY--RYNLGLVMQEV- 212 (832)
Q Consensus 136 I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~ry--~~n~g~ll~~v- 212 (832)
|.+|+|....--+....-+.+.+ -+..+.-++-|...+-.+++|+++|.++|++|.+.++.-|= .--+|=++|+|
T Consensus 383 i~~g~IS~k~AK~~v~~~~~~~~--~~p~~iie~~gL~qisD~~~l~~~V~evia~Np~~ve~yk~GK~~~~~f~vGQVM 460 (483)
T COG0064 383 IDEGTISGKIAKELVFEILANGG--KDPEEIIEEKGLVQISDEGELEKIVDEVLAENPKAVEDYKSGKEKALGFLVGQVM 460 (483)
T ss_pred HHcCCccHHHHHHHHHHHHHccC--CCHHHHHHhcCccccCCHHHHHHHHHHHHHHCHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999987555554555555442 47888899999999777779999999999999998766441 11245555555
Q ss_pred HhhCCCCChhhhHHHHHHH
Q psy17575 213 RTLLKWADGKYIKSEVDVQ 231 (832)
Q Consensus 213 R~~LkWAd~k~vK~~vD~~ 231 (832)
|+.=-=|||..+...|-+.
T Consensus 461 k~T~GkAnP~~v~~ll~~~ 479 (483)
T COG0064 461 KATKGKANPQQVNELLKEK 479 (483)
T ss_pred HHhcCCCCHHHHHHHHHHH
Confidence 3344568888877766553
No 111
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=95.12 E-value=0.06 Score=60.33 Aligned_cols=92 Identities=22% Similarity=0.174 Sum_probs=60.2
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC-------CcccccHHHHHHHHHHHHHcCCCcC--cccc
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDT-------NPEKEEEKFFTGIKDMVQWLGYKPY--QITH 390 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-------Dp~r~~~e~~~~I~edL~WLGl~pd--~~~~ 390 (832)
|.+=|. |||.+||||...++.+|..-+..+..+++--|+. +++ +..++...+..++-.+|++|+ .+..
T Consensus 5 v~sG~~--PTG~~HLGn~l~~~~~~~~lQ~~~~~~i~IaD~ha~~~~~~~~~-~i~~~~~~~~~~~lA~G~dp~k~~i~~ 81 (333)
T PRK12282 5 ILTGDR--PTGKLHLGHYVGSLKNRVALQNEHEQFVLIADQQALTDNAKNPE-KIRRNILEVALDYLAVGIDPAKSTIFI 81 (333)
T ss_pred EEEeeC--CCCcchHHHHHHHHHHHHHHHhCCCEEEEEccchhHhCCCCCHH-HHHHHHHHHHHHHHHhCcChhHeEEEE
Confidence 444444 5799999999999999966666666655543433 222 233455566667778999998 4677
Q ss_pred cchhHHHHHHHHHHHHHcCCccccCCCHHHHh
Q psy17575 391 SSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMK 422 (832)
Q Consensus 391 qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~ 422 (832)
||+..+ +.+.+. .+.|.++-.++.
T Consensus 82 qS~~~e-~~~l~~-------~l~~~~~~~~l~ 105 (333)
T PRK12282 82 QSQIPE-LAELTM-------YYMNLVTVARLE 105 (333)
T ss_pred CCcchH-HHHHHH-------HHHhhchHHHHh
Confidence 998643 444322 266777777665
No 112
>PLN02882 aminoacyl-tRNA ligase
Probab=94.86 E-value=0.071 Score=68.55 Aligned_cols=90 Identities=20% Similarity=0.191 Sum_probs=63.8
Q ss_pred CCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCcc----------------c-----------------ccHH
Q psy17575 325 PPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNPE----------------K-----------------EEEK 369 (832)
Q Consensus 325 aPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp~----------------r-----------------~~~e 369 (832)
||.+||.||+||+++..+-..+||. ..|.-+++.--+|-. + -...
T Consensus 46 PPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~ 125 (1159)
T PLN02882 46 PPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTR 125 (1159)
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHH
Confidence 6999999999999999999888875 456666665444311 0 1246
Q ss_pred HHHHHHHHHHHcC--CCcCcccccch--hHHHHHHHHHHHHHcCCcccc
Q psy17575 370 FFTGIKDMVQWLG--YKPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC 414 (832)
Q Consensus 370 ~~~~I~edL~WLG--l~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C 414 (832)
|.+.+.+.++.|| ++|+..+...+ |.........+|.++|+.|.-
T Consensus 126 ~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~~kGliyr~ 174 (1159)
T PLN02882 126 YSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYKG 174 (1159)
T ss_pred HHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 7788899999999 77886655444 222223334579999998864
No 113
>KOG0435|consensus
Probab=94.74 E-value=0.032 Score=66.32 Aligned_cols=95 Identities=27% Similarity=0.401 Sum_probs=66.3
Q ss_pred CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcC--CEEEEe----------cc------CCCcccccHHHHHHHHHHH
Q psy17575 317 GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHN--GICFLR----------YD------DTNPEKEEEKFFTGIKDMV 378 (832)
Q Consensus 317 ~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~g--G~~iLR----------iD------DTDp~r~~~e~~~~I~edL 378 (832)
+.+++.=-=|-|+|.|||||.|...++-..||-+. |.=++- =| .++|.-=....++...+.|
T Consensus 57 k~KYiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~Ql 136 (876)
T KOG0435|consen 57 KKKYILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQQL 136 (876)
T ss_pred CCceEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHHHHHH
Confidence 34566666699999999999999999999987643 433321 11 2344444667888999999
Q ss_pred HHcCC--CcCc-ccccchhHHHHHHH----HHHHHHcCCcccc
Q psy17575 379 QWLGY--KPYQ-ITHSSDYFHQLYEW----AVKLIKKGLAYVC 414 (832)
Q Consensus 379 ~WLGl--~pd~-~~~qSd~~~~~ye~----A~~Li~~G~AY~C 414 (832)
..||+ +||+ ++-.+ ..||.+ ..+|.+.|+||.-
T Consensus 137 ~~lg~~FDWdrEiSTC~---PdYYKWTQwiFlkLfe~GLAYq~ 176 (876)
T KOG0435|consen 137 KSLGISFDWDREISTCE---PDYYKWTQWIFLKLFEKGLAYQA 176 (876)
T ss_pred HHcCcccccccccccCC---cchhHHHHHHHHHHHHhhhhhcc
Confidence 99996 5764 43333 345543 3489999999975
No 114
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=94.62 E-value=0.082 Score=60.93 Aligned_cols=88 Identities=17% Similarity=0.140 Sum_probs=60.0
Q ss_pred CCCCcCchHHHHHHHHHHHHHHh-cCCEEEEeccCC-------CcccccHHHHHHHHHHHHHcCCCcCc--ccccchhHH
Q psy17575 327 EPNGILHIGHAKAININFGYAAA-HNGICFLRYDDT-------NPEKEEEKFFTGIKDMVQWLGYKPYQ--ITHSSDYFH 396 (832)
Q Consensus 327 sPtG~LHIGharaaL~n~l~Ar~-~gG~~iLRiDDT-------Dp~r~~~e~~~~I~edL~WLGl~pd~--~~~qSd~~~ 396 (832)
.|||.|||||...++-||..... .|..+++=|=|. ||++-. .....+..++-.+|++|++ +..||+. .
T Consensus 10 qPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~lr-~~~~e~aa~~LA~GlDPek~~if~QSdv-p 87 (431)
T PRK12284 10 TTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARIQ-RSTLEIAATWLAAGLDPERVTFYRQSDI-P 87 (431)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHHHH-HHHHHHHHHHHHhCCCccceEEEECCcc-h
Confidence 58999999999999999988754 455666555553 444333 3344466677778999984 6889984 4
Q ss_pred HHHHHHHHHHHcCCccccCCCHHHHhc
Q psy17575 397 QLYEWAVKLIKKGLAYVCHQKSDEMKG 423 (832)
Q Consensus 397 ~~ye~A~~Li~~G~AY~C~Cs~eel~~ 423 (832)
.+.+++--|- |.++--+|.+
T Consensus 88 eh~EL~wiL~-------~it~~g~L~R 107 (431)
T PRK12284 88 EIPELTWLLT-------CVAGKGLLNR 107 (431)
T ss_pred hHHHHHHHHH-------hhhhHHHHHh
Confidence 5556554443 7666666654
No 115
>PF09424 YqeY: Yqey-like protein; InterPro: IPR019004 Putative protein of unknown function; the authentic protein is detected in highly purified mitochondria in high-throughput studies; YOR215C is not an essential gene. ; PDB: 1NG6_A.
Probab=94.56 E-value=0.19 Score=49.82 Aligned_cols=85 Identities=22% Similarity=0.267 Sum_probs=58.3
Q ss_pred chHHHHHHHHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcccccchhh
Q psy17575 128 HLPLLVKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYRYNLGL 207 (832)
Q Consensus 128 ~r~~l~~~I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~ry~~n~g~ 207 (832)
.+.-+..|-..|+..--.+..+=+..|.+.-+ -.+|+|+|+.+|.++|++..+. ..+ ++|.
T Consensus 57 r~ea~e~y~~agR~dlae~e~~Ei~iL~~yLP--------------~~lseeEi~~~v~~~i~e~ga~--~~k---~mG~ 117 (143)
T PF09424_consen 57 RKEAAEQYEKAGRPDLAEKEQAEIEILEEYLP--------------KQLSEEEIEAIVEEAIAELGAS--SMK---DMGK 117 (143)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHGGGS-------------------HHHHHHHHHHHHHHTT----BGG---GHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCc--------------CCCCHHHHHHHHHHHHHHhCCC--ChH---HHHH
Confidence 45666777777776656666777777776621 2799999999999999997654 223 8999
Q ss_pred hHHHHHhhCC-CCChhhhHHHHHHH
Q psy17575 208 VMQEVRTLLK-WADGKYIKSEVDVQ 231 (832)
Q Consensus 208 ll~~vR~~Lk-WAd~k~vK~~vD~~ 231 (832)
+|+.++..++ =|||+.|...|-..
T Consensus 118 vMk~l~~~~~G~~Dgk~vs~~Vk~~ 142 (143)
T PF09424_consen 118 VMKALMAKLKGRADGKKVSQLVKEA 142 (143)
T ss_dssp HHHHHHHHHTTTS-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCcccHHHHHHHHHhh
Confidence 9999998655 68999998887653
No 116
>PF02637 GatB_Yqey: GatB domain; InterPro: IPR018027 The GatB domain, the function of which is uncertain, is associated with aspartyl/glutamyl amidotransferase subunit B and glutamyl amidotransferase subunit E. These are involved in the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 2D6F_D 3H0M_H 3H0R_K 3H0L_K 3KFU_F 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B ....
Probab=94.20 E-value=0.16 Score=50.12 Aligned_cols=103 Identities=19% Similarity=0.266 Sum_probs=73.6
Q ss_pred ccchHHHHHHHHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHh--ccccc
Q psy17575 126 SIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLD--KRYRY 203 (832)
Q Consensus 126 ~~~r~~l~~~I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~--~ry~~ 203 (832)
..+...|+..+.+|+|.. .+....+..+-++ .-+..+.-++.|.+..-++++|++.|+++|++|.+++.. ++=.-
T Consensus 42 ~~~l~~li~l~~~~~Is~-~~ak~ll~~~~~~--~~~~~~ii~~~~l~~i~d~~el~~~v~~vi~~n~~~v~~~~~Gk~k 118 (148)
T PF02637_consen 42 PEHLAELINLLEDGKISK-KSAKELLRELLEN--GKSPEEIIEENGLWQISDEEELEALVEEVIAENPKEVEDYRNGKKK 118 (148)
T ss_dssp HHHHHHHHHHHHTTSSGH-HHHHHHHHHHHHH--TS-HHHHHHHTT---B--CCHHHHHHHHHHHC-HHHHHHHCTT-TT
T ss_pred HHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHc--CCCHHHHHHHcCCCcCCCHHHHHHHHHHHHHHCHHHHHHHHcChHH
Confidence 367889999999999976 6778888877655 357788888899988888899999999999999876543 22223
Q ss_pred chhhhHHHHHhh-CCCCChhhhHHHHHHH
Q psy17575 204 NLGLVMQEVRTL-LKWADGKYIKSEVDVQ 231 (832)
Q Consensus 204 n~g~ll~~vR~~-LkWAd~k~vK~~vD~~ 231 (832)
-+|-|||+|-+. =-=|||+.|++.+.+.
T Consensus 119 ~~~~LvGqvMk~t~G~adp~~v~~~l~~~ 147 (148)
T PF02637_consen 119 AIGFLVGQVMKETKGRADPKEVKELLKEK 147 (148)
T ss_dssp CCHHHHHHHHHCTTS-C-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhh
Confidence 478899998664 4479999999988764
No 117
>KOG0432|consensus
Probab=93.94 E-value=0.13 Score=63.06 Aligned_cols=92 Identities=28% Similarity=0.354 Sum_probs=67.5
Q ss_pred eCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCccc------------------------c---------cH
Q psy17575 324 FPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNPEK------------------------E---------EE 368 (832)
Q Consensus 324 FaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp~r------------------------~---------~~ 368 (832)
=||..||-||||||-++.+--..||. ..|.-+|=+--||..- + .+
T Consensus 82 PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~ 161 (995)
T KOG0432|consen 82 PPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKE 161 (995)
T ss_pred CCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHH
Confidence 36889999999999999999888876 4577777777776431 1 35
Q ss_pred HHHHHHHHHHHHcC--CCcCcccccch-hHH-HHHHHHHHHHHcCCccccC
Q psy17575 369 KFFTGIKDMVQWLG--YKPYQITHSSD-YFH-QLYEWAVKLIKKGLAYVCH 415 (832)
Q Consensus 369 e~~~~I~edL~WLG--l~pd~~~~qSd-~~~-~~ye~A~~Li~~G~AY~C~ 415 (832)
+|-..|.+.|+.|| ++|++..+.-| .+. ..-+...+|-++|..|+..
T Consensus 162 e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~ 212 (995)
T KOG0432|consen 162 EYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRAN 212 (995)
T ss_pred HhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHHhcCceEecC
Confidence 67778999999999 56776655443 111 2234556899999999874
No 118
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=93.89 E-value=0.16 Score=58.16 Aligned_cols=88 Identities=19% Similarity=0.132 Sum_probs=59.1
Q ss_pred CCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC----Ccc---cccHHHHHHHHHHHHHcCCCcC--cccccchhHHH
Q psy17575 327 EPNGILHIGHAKAININFGYAAAHNGICFLRYDDT----NPE---KEEEKFFTGIKDMVQWLGYKPY--QITHSSDYFHQ 397 (832)
Q Consensus 327 sPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT----Dp~---r~~~e~~~~I~edL~WLGl~pd--~~~~qSd~~~~ 397 (832)
.|||.+||||...++-||.- .+.++.+++=|=|. ++. .+..+....+..++-.+|++|. .+..||+. ..
T Consensus 10 qPSG~~HLGnylG~ik~wv~-lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~QS~v-~e 87 (398)
T PRK12283 10 RPTGRLHLGHYHGVLKNWVK-LQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFIQSKV-PE 87 (398)
T ss_pred CCCCcchHHHHHHHHHHHHH-HhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCCc-hH
Confidence 47899999999999998873 45577766666663 221 2334555667888888999998 47889985 33
Q ss_pred HHHHHHHHHHcCCccccCCCHHHHhc
Q psy17575 398 LYEWAVKLIKKGLAYVCHQKSDEMKG 423 (832)
Q Consensus 398 ~ye~A~~Li~~G~AY~C~Cs~eel~~ 423 (832)
+-+.+- .|.|.++--++++
T Consensus 88 h~eL~w-------il~~~t~~~~L~R 106 (398)
T PRK12283 88 HAELHL-------LLSMITPLGWLER 106 (398)
T ss_pred HHHHHH-------HHHhhccHHHHHh
Confidence 323222 2457777666653
No 119
>PLN02959 aminoacyl-tRNA ligase
Probab=93.88 E-value=0.15 Score=65.40 Aligned_cols=31 Identities=42% Similarity=0.486 Sum_probs=25.8
Q ss_pred ceEEeeC-CCCCCcCchHHHHHHHHHHHHHHh
Q psy17575 319 KVRTRFP-PEPNGILHIGHAKAININFGYAAA 349 (832)
Q Consensus 319 ~v~tRFa-PsPtG~LHIGharaaL~n~l~Ar~ 349 (832)
+...=|| |.+||.|||||+++..+--.+||.
T Consensus 46 kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Ry 77 (1084)
T PLN02959 46 KFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAY 77 (1084)
T ss_pred cEEEeCCCCCCCCCcchhhHHHHHHHHHHHHH
Confidence 4566676 999999999999999998777764
No 120
>PLN02886 aminoacyl-tRNA ligase
Probab=93.46 E-value=0.17 Score=57.78 Aligned_cols=92 Identities=17% Similarity=0.137 Sum_probs=61.0
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC-------CcccccHHHHHHHHHHHHHcCCCcC--cccc
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDT-------NPEKEEEKFFTGIKDMVQWLGYKPY--QITH 390 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-------Dp~r~~~e~~~~I~edL~WLGl~pd--~~~~ 390 (832)
|.+=|- |||.+||||..-++-||..-.. +..+++=|=|. |++ +..++...+..++-.+|++|. .+..
T Consensus 49 v~sGiq--PSG~lHLGnylGai~~~v~lQ~-~~~~~~~IADlHAlt~~~~~~-~lr~~~~~~~a~~lA~GlDP~ks~if~ 124 (389)
T PLN02886 49 VVSGVQ--PTGSIHLGNYLGAIKNWVALQE-TYDTFFCVVDLHAITLPHDPR-ELGKATRSTAAIYLACGIDPSKASVFV 124 (389)
T ss_pred EEEEEC--CCCccHHHHHHHHHHHHHHHhc-cCCEEEEEecHHHhhCCCCHH-HHHHHHHHHHHHHHHcCcCccceEEEE
Confidence 555554 6799999999988999966554 55555555553 222 233455556778888899998 4688
Q ss_pred cchhHHHHHHHHHHHHHcCCccccCCCHHHHhc
Q psy17575 391 SSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKG 423 (832)
Q Consensus 391 qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~ 423 (832)
||+. ..+.+++-. +.|.++--+|.+
T Consensus 125 QS~v-~e~~eL~wi-------l~~~t~~g~L~R 149 (389)
T PLN02886 125 QSHV-PAHAELMWL-------LSCSTPIGWLNK 149 (389)
T ss_pred eCCC-chhHHHHHH-------HHhhCcHHHHHh
Confidence 9984 444454433 457777767764
No 121
>smart00845 GatB_Yqey GatB domain. This domain is found in GatB and proteins related to bacterial Yqey. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism.
Probab=93.27 E-value=0.6 Score=46.24 Aligned_cols=101 Identities=21% Similarity=0.277 Sum_probs=76.4
Q ss_pred cchHHHHHHHHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCH-HHHHHHHHHHHHHHHHHHHhcc--ccc
Q psy17575 127 IHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTS-EDIEETVSKVVEKHKAELLDKR--YRY 203 (832)
Q Consensus 127 ~~r~~l~~~I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~-EqI~~~V~~~i~~~k~~l~~~r--y~~ 203 (832)
.+...|++.|.+|+|.. .+....++.+-+.+ -+..++-++.|.+- +|. +++++.|+++|++|.+.+.+-| -.-
T Consensus 42 ~~l~~li~lv~~g~It~-~~ak~vl~~~~~~~--~~~~~ii~~~~l~~-isd~~el~~~v~~vi~~~~~~v~~~~~g~~k 117 (147)
T smart00845 42 EHLAELLKLIEDGTISG-KIAKEVLEELLESG--KSPEEIVEEKGLKQ-ISDEGELEAIVDEVIAENPKAVEDYRAGKKK 117 (147)
T ss_pred HHHHHHHHHHHcCCCcH-HHHHHHHHHHHHcC--CCHHHHHHHcCCcc-CCCHHHHHHHHHHHHHHCHHHHHHHHCCHHH
Confidence 67889999999999986 55566777665543 46889999999974 675 5999999999999988765432 112
Q ss_pred chhhhHHHHHh-hCCCCChhhhHHHHHHH
Q psy17575 204 NLGLVMQEVRT-LLKWADGKYIKSEVDVQ 231 (832)
Q Consensus 204 n~g~ll~~vR~-~LkWAd~k~vK~~vD~~ 231 (832)
.+|.+||++-+ .=-=|||+.+.+.|.+.
T Consensus 118 ~~~~l~G~vMk~~~G~ad~~~v~~~l~~~ 146 (147)
T smart00845 118 ALGFLVGQVMKATRGKADPKLVNELLKEK 146 (147)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 47888888865 33448999999887653
No 122
>PLN02486 aminoacyl-tRNA ligase
Probab=93.19 E-value=0.31 Score=55.67 Aligned_cols=86 Identities=19% Similarity=0.191 Sum_probs=54.8
Q ss_pred ceEEeeCCCCCC-cCchHHHHHHHHHHHHHHhcCCEEEEeccCC----Ccc---cccHHHHHHHHHHHHHcCCCcCc--c
Q psy17575 319 KVRTRFPPEPNG-ILHIGHAKAININFGYAAAHNGICFLRYDDT----NPE---KEEEKFFTGIKDMVQWLGYKPYQ--I 388 (832)
Q Consensus 319 ~v~tRFaPsPtG-~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT----Dp~---r~~~e~~~~I~edL~WLGl~pd~--~ 388 (832)
+...=-.=.||| .|||||+-.+++.-.+.+..|..+++=|-|- ... .+..++......++..+|++|++ +
T Consensus 73 ~~~vYtG~~PSg~~lHlGHlv~~~~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt~I 152 (383)
T PLN02486 73 KFYLYTGRGPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERTFI 152 (383)
T ss_pred CeEEEeCCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcceEE
Confidence 433333346788 5999999999987777777788888777761 111 11234445566777779999984 4
Q ss_pred cccchhH-HHHHHHHHH
Q psy17575 389 THSSDYF-HQLYEWAVK 404 (832)
Q Consensus 389 ~~qSd~~-~~~ye~A~~ 404 (832)
..+++++ ..+|..+.+
T Consensus 153 ~s~~~~~~~~~~~~~~~ 169 (383)
T PLN02486 153 FSDFDYVGGAFYKNMVK 169 (383)
T ss_pred EeccHHHhHhHHHHHHH
Confidence 5566665 235554544
No 123
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=92.05 E-value=0.63 Score=53.26 Aligned_cols=91 Identities=18% Similarity=0.115 Sum_probs=55.3
Q ss_pred cHHHHHHhhhhcCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC-----Ccc----cccHHHHHHHH
Q psy17575 305 THDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDT-----NPE----KEEEKFFTGIK 375 (832)
Q Consensus 305 ~~~~~~~hl~~~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-----Dp~----r~~~e~~~~I~ 375 (832)
+.+.|++.|+. +...+.=..=.|||.+||||.-.-.++|.-=...|..+++=|-|. |+. ...........
T Consensus 53 ~~eel~~~l~~-~~~~~v~~G~~PTG~lHLG~g~i~~~~~~~lq~~G~~v~~~IaD~hA~~~~~~g~~l~~i~~~~~~~~ 131 (383)
T PTZ00126 53 QPEELRELLKL-KERPICYDGFEPSGRMHIAQGILKAINVNKLTKAGCVFVFWVADWFALLNNKMGGDLEKIRKVGEYFI 131 (383)
T ss_pred CHHHHHHHHhc-CCCCEEEEEECCCCcccccchHhHhHHHHHHHhCCCeEEEEEccceeecCCCCCCCHHHHHHHHHHHH
Confidence 36667777753 344445555568899999993222223333345577777766664 221 12234445566
Q ss_pred HHHHHcCCCcC--cccccchhHH
Q psy17575 376 DMVQWLGYKPY--QITHSSDYFH 396 (832)
Q Consensus 376 edL~WLGl~pd--~~~~qSd~~~ 396 (832)
.++..+|++|+ .+.+||++..
T Consensus 132 ~~~~A~GlDp~k~~i~~qS~~v~ 154 (383)
T PTZ00126 132 EVWKAAGMDMDNVRFLWASEEIN 154 (383)
T ss_pred HHHHHhCCCccceEEEECChhhh
Confidence 67888999998 5688998654
No 124
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=91.95 E-value=0.1 Score=58.73 Aligned_cols=45 Identities=29% Similarity=0.376 Sum_probs=32.3
Q ss_pred CceEEee-CCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCC
Q psy17575 318 GKVRTRF-PPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTN 362 (832)
Q Consensus 318 ~~v~tRF-aPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTD 362 (832)
.+|+.=| .|.|||+|||||+|++++=..+||- +.|-=+.|.-=+|
T Consensus 20 ~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyig 67 (354)
T PF00750_consen 20 KKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIG 67 (354)
T ss_dssp EEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEB
T ss_pred CEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEEC
Confidence 3455555 6999999999999999998888875 6677777754444
No 125
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=91.32 E-value=4.2 Score=47.97 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=40.2
Q ss_pred CceEEeeCCCCCCcCchHHHHHHHHHHHHHHh-----cCCEEEEeccCCCcccccH
Q psy17575 318 GKVRTRFPPEPNGILHIGHAKAININFGYAAA-----HNGICFLRYDDTNPEKEEE 368 (832)
Q Consensus 318 ~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~-----~gG~~iLRiDDTDp~r~~~ 368 (832)
+.+++==.=||||..||||+|-.+--...+|. +.-++|-=-||-||-|..+
T Consensus 19 ~~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp 74 (521)
T COG1384 19 DEYVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVP 74 (521)
T ss_pred CcEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCC
Confidence 55666667899999999999988877766654 4467888889999988644
No 126
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=89.65 E-value=1.9 Score=52.89 Aligned_cols=89 Identities=17% Similarity=0.065 Sum_probs=53.3
Q ss_pred HHHHHHhhhhcCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC-----Cccc-c---cHHHHHHHHH
Q psy17575 306 HDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDT-----NPEK-E---EEKFFTGIKD 376 (832)
Q Consensus 306 ~~~~~~hl~~~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-----Dp~r-~---~~e~~~~I~e 376 (832)
.+.|++-|+. +..++.=..=.|||.|||||..-..+++....+.|..+++=|-|. |+.. . .......+..
T Consensus 20 ~eeL~~ll~~-~~~~rv~sGi~PTG~lHLGng~~~aik~~~~~q~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~~ 98 (682)
T PTZ00348 20 ESELRNLIEK-KPLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTQAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIE 98 (682)
T ss_pred HHHHHHHHhc-CCCCEEEEeeCCCCcCeeccHHHHHHHHHHHHhCCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHHH
Confidence 4555554532 333444445568899999993222444444456787877767664 2211 1 1222346777
Q ss_pred HHHHcCCCcC--cccccchhH
Q psy17575 377 MVQWLGYKPY--QITHSSDYF 395 (832)
Q Consensus 377 dL~WLGl~pd--~~~~qSd~~ 395 (832)
++..+|++|+ .+.+||+.+
T Consensus 99 ~~lA~GlDpeK~~~~~qSd~i 119 (682)
T PTZ00348 99 VWKAAGMDMDKVLFLWSSEEI 119 (682)
T ss_pred HHHHcCCCccceEEEECcHhh
Confidence 8889999998 467899733
No 127
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=88.07 E-value=0.11 Score=57.62 Aligned_cols=54 Identities=28% Similarity=0.385 Sum_probs=42.7
Q ss_pred CCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC-cccCHHHHHHHHHHhhc
Q psy17575 565 NDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ-AVVSPNMLEAVVREVLN 618 (832)
Q Consensus 565 ~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~-~~~~~~~le~~~r~~l~ 618 (832)
.+|++|+..++.+|+++|++|+++.+|+...|++... ....+...+.|+++.|+
T Consensus 259 r~~g~~~~~~l~~L~~lG~~~~~~~e~~~~~~~~~~f~~~~~~~~~~~fd~~kL~ 313 (314)
T PF00749_consen 259 REWGDPPEATLNYLARLGWSPEAIREFFSLDELIKQFDLSKISKSPAVFDRKKLD 313 (314)
T ss_dssp HHTT-THHHHHHHHHHTTB-HCTHHCHHHHHHHHHHC-GGGBHSSHEEHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhcCCcchhhhhcCHHHHHHHhhHhhccCchHHhCHHHhC
Confidence 4799999999999999999999999999999988654 44556666777777664
No 128
>PHA01735 hypothetical protein
Probab=87.78 E-value=0.86 Score=39.78 Aligned_cols=53 Identities=25% Similarity=0.241 Sum_probs=45.0
Q ss_pred HHHHHHHHhCCCCCHHhHHHHHHHHHhCCCc---cCHHHHHHHcCCcEEeCHHHHHH
Q psy17575 130 PLLVKYIVSKALDSTLRVDAALEYVLSHVNA---VNEKELEASCGVGVIVTSEDIEE 183 (832)
Q Consensus 130 ~~l~~~I~~gklkt~~Ql~aAlkyl~~~~~~---~d~~~Fe~~cGVGV~VT~EqI~~ 183 (832)
..+.+.|.+|.-+| +.|.||++||++|.-+ .+-.-+.+-.|+=-.+|.|+|++
T Consensus 19 ~El~~RiksgeATt-aDL~AA~d~Lk~NdItgv~~~gspl~~La~~~P~l~~e~vq~ 74 (76)
T PHA01735 19 NELLSRIKSGEATT-ADLRAACDWLKSNDITGVAVDGSPLAKLAGLMPQLTFEDVQE 74 (76)
T ss_pred HHHHHHHhcCcccH-HHHHHHHHHHHHCCCceeeCCCCHHHHHHhcCccCCHHHHHh
Confidence 56789999998765 9999999999999533 77788999999988999999765
No 129
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=86.87 E-value=1 Score=57.18 Aligned_cols=90 Identities=16% Similarity=0.139 Sum_probs=58.9
Q ss_pred eeeecccccccchhHHHHHHhcCCC---CCCcc-cccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCC
Q psy17575 509 HSLCTKEFQSRRSSYYWLCNALDIY---CPVQW-EYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFP 584 (832)
Q Consensus 509 HvlRg~E~~~~~~~~~~L~~aL~~~---~P~~~-ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~ 584 (832)
.-+=|.|++..+..+..+..++.+. -|..| ..||+..+|.||||++++- .++..+.++ |.
T Consensus 576 ~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGNv---------------I~p~d~i~~-yG 639 (938)
T TIGR00395 576 WRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNV---------------LTLEQAVEK-FG 639 (938)
T ss_pred EEEEeeccccchHHHHHHHHHHcCCccccCcEEEEeceEEeCCccccCcCCCC---------------CCHHHHHHH-cC
Confidence 3344888876554443333333332 24332 3577888999999999752 234444443 89
Q ss_pred HHHHHHHHHHhCCCCCCcccCHHHHHHHHH
Q psy17575 585 PEAINKFCARMGVTGAQAVVSPNMLEAVVR 614 (832)
Q Consensus 585 PeAI~nfl~~lG~s~~~~~~~~~~le~~~r 614 (832)
+.++|-||+..|-...+..|+++.+.+..+
T Consensus 640 aDalRl~Ll~~~~~~~D~~fs~~~~~~~~~ 669 (938)
T TIGR00395 640 ADVARLYIADAAETVQDADWKESEVEGTIL 669 (938)
T ss_pred hHHHHHHHHhcCCCCCCCCcCHHHHHHHHH
Confidence 999999999988777888888877765543
No 130
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=86.46 E-value=2.6 Score=48.26 Aligned_cols=86 Identities=15% Similarity=0.185 Sum_probs=50.8
Q ss_pred HHHHHHhhhhcCCceEEeeCCCCCC-cCchHHHHHHHHHHHHHHhcCCEEEEeccCC-----Ccc-----c------ccH
Q psy17575 306 HDLLREHIKYTGGKVRTRFPPEPNG-ILHIGHAKAININFGYAAAHNGICFLRYDDT-----NPE-----K------EEE 368 (832)
Q Consensus 306 ~~~~~~hl~~~~~~v~tRFaPsPtG-~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-----Dp~-----r------~~~ 368 (832)
.+.|.++++. +.+.=..=.||| .|||||+..+. ++..-+..|-..++=|-|- ||. | +..
T Consensus 20 ~~~l~~ll~~---~~~vy~G~dPTg~~lHlGh~v~l~-~l~~lq~~G~~~~iligd~ta~igdpsg~~~~R~~~~~~~i~ 95 (377)
T TIGR00234 20 EEELLKLLER---KIKLYVGFDPTAPSLHLGHLVPLL-KLRDFQQAGHEVIVLLGDATALIGDPSGKSEERKLLTREEVQ 95 (377)
T ss_pred HHHHHHHhcC---CCEEEEeeCCCCCCccHHHHHHHH-HHHHHHHCCCcEEEEEeccchhhcCCCChHHHhhcCCHHHHH
Confidence 5677777765 333334446889 89999998644 4444445665555556554 442 1 122
Q ss_pred HHHHHHHHHHHHcCCCcC--cccccchhHH
Q psy17575 369 KFFTGIKDMVQWLGYKPY--QITHSSDYFH 396 (832)
Q Consensus 369 e~~~~I~edL~WLGl~pd--~~~~qSd~~~ 396 (832)
++.+.|.. .-..|++|+ .+.++|+.+.
T Consensus 96 ~n~~~i~~-~la~gld~~k~~iv~ns~w~~ 124 (377)
T TIGR00234 96 ENAENIKK-QIARFLDFEKAKFVNNSEWLL 124 (377)
T ss_pred HHHHHHHH-HHHHhCChhheEEEECchhcC
Confidence 34444443 335678876 4678888654
No 131
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=86.22 E-value=0.38 Score=56.38 Aligned_cols=93 Identities=16% Similarity=0.268 Sum_probs=67.3
Q ss_pred CCCCCccc---ccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccC---
Q psy17575 532 IYCPVQWE---YGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVS--- 605 (832)
Q Consensus 532 ~~~P~~~e---f~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~--- 605 (832)
++..+.|. |.|+++... =..+++++-- | ..++..++..|+.|+||.||++.+||+.....+.
T Consensus 226 l~~~lg~~~P~~~H~~li~~-~~g~kLSKr~--~---------~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~ 293 (472)
T COG0008 226 LYEALGWPPPVYAHLPLLLN-EDGKKLSKRK--G---------AVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFS 293 (472)
T ss_pred HHHHcCCCCCcEEEeeeeec-CCCCeecCcc--C---------ccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHH
Confidence 45566666 888888877 5655666531 2 3478889999999999999999999997644333
Q ss_pred -HHHHHHHHHHhhccCCCceeEEecCcceEEeecCC
Q psy17575 606 -PNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQ 640 (832)
Q Consensus 606 -~~~le~~~r~~l~~~a~R~~av~dp~kl~i~N~~~ 640 (832)
.+.+.++.-..+.+. .+.+|..||.|.|...
T Consensus 294 ~~~~~~~fd~~~~~~~----~~~fd~~kL~~~n~ry 325 (472)
T COG0008 294 LEEGIKWFDLTIVSKS----PAAFDRKKLDWLNPRY 325 (472)
T ss_pred HHHHHhhhhhhhhhcc----cccccHHHhHhhhHHH
Confidence 344555555554444 4889999999999654
No 132
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=85.74 E-value=1.2 Score=56.34 Aligned_cols=81 Identities=25% Similarity=0.266 Sum_probs=53.3
Q ss_pred CchHHHHHHHHHHHHHHh--cCCEEEEe---ccCCCccc-------------------------------------ccHH
Q psy17575 332 LHIGHAKAININFGYAAA--HNGICFLR---YDDTNPEK-------------------------------------EEEK 369 (832)
Q Consensus 332 LHIGharaaL~n~l~Ar~--~gG~~iLR---iDDTDp~r-------------------------------------~~~e 369 (832)
|||||+++..+--.+||. ..|.-+|+ +|.+--+- -...
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~ 80 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY 80 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 799999999998888875 45776766 34332111 1123
Q ss_pred HHHHHHHHHHHcCC--CcCcccccchhHHHHHHH----HHHHHHcCCcccc
Q psy17575 370 FFTGIKDMVQWLGY--KPYQITHSSDYFHQLYEW----AVKLIKKGLAYVC 414 (832)
Q Consensus 370 ~~~~I~edL~WLGl--~pd~~~~qSd~~~~~ye~----A~~Li~~G~AY~C 414 (832)
|.+.+.++++.||+ +|++.+...| ..|++. ..+|.++|++|.-
T Consensus 81 ~~~~~~~~~~~lG~~~DW~r~y~T~d--p~y~~~v~w~F~~L~ekGliyrg 129 (897)
T PRK12300 81 FSEEAKEDMKRIGYSIDWRREFTTTD--PEYSKFIEWQFRKLKEKGLIVKG 129 (897)
T ss_pred hHHHHHHHHHHhCcEEeCCCCeECCC--hhHHHHHHHHHHHHHHCCCEecC
Confidence 44778999999996 4666544444 233332 3479999999974
No 133
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=77.20 E-value=3.7 Score=51.98 Aligned_cols=89 Identities=11% Similarity=0.058 Sum_probs=55.8
Q ss_pred eeeecccccccchhHHHHHHhcCCC---CCCc-ccccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCC
Q psy17575 509 HSLCTKEFQSRRSSYYWLCNALDIY---CPVQ-WEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFP 584 (832)
Q Consensus 509 HvlRg~E~~~~~~~~~~L~~aL~~~---~P~~-~ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~ 584 (832)
..+=|.|++...-.+..+..+..+. .|.. ..-|++..+|.||||++++- | | ...+.+ -|.
T Consensus 533 ~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNv------V----d-----p~eii~-~yG 596 (897)
T PRK12300 533 WRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNV------I----P-----LRKAIE-EYG 596 (897)
T ss_pred EEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEECCccccCcCCCC------C----C-----HHHHHH-HcC
Confidence 3355788776544444444444332 2322 12466667899999999742 2 2 333333 277
Q ss_pred HHHHHHHHHHhCCCCCCcccCHHHHHHHH
Q psy17575 585 PEAINKFCARMGVTGAQAVVSPNMLEAVV 613 (832)
Q Consensus 585 PeAI~nfl~~lG~s~~~~~~~~~~le~~~ 613 (832)
+.|+|-||+..|-...+..++++.+....
T Consensus 597 aDalRl~L~~~~~~~~D~~fs~~~v~~~~ 625 (897)
T PRK12300 597 ADVVRLYLTSSAELLQDADWREKEVESVR 625 (897)
T ss_pred hHHHHHHHHhCCCCCCCCccCHHHHHHHH
Confidence 99999999998877788888877665543
No 134
>KOG2438|consensus
Probab=72.72 E-value=95 Score=36.43 Aligned_cols=156 Identities=17% Similarity=0.172 Sum_probs=95.8
Q ss_pred HHHhCCCCchhhHHhhcCHhHHHHHHHH--HHHhcccCCCCcchhhhHHH-HHHhhccC-------C--CccchHHHHHH
Q psy17575 68 AFLSVGLNEKKAKETLKNETLSTYLKQA--IEEASKISPHSLQDCGSLLY-HLASKIKS-------Q--SSIHLPLLVKY 135 (832)
Q Consensus 68 lF~~iGL~e~kAketlKN~kls~~L~~i--I~ea~~~~~~~dk~~g~LLy-~lAtk~k~-------~--~~~~r~~l~~~ 135 (832)
|-...||+-+.|.-++-+..+..-.++. |.+...+ . .++...+-+- .+...++. + .......|+..
T Consensus 327 L~e~~gl~~k~a~~L~~~~~~~~~~~d~v~i~k~~ae-~-~~k~~~~Wi~~~~~g~lrq~~ls~~~~~~~p~~la~ll~l 404 (505)
T KOG2438|consen 327 LVEQYGLSAKDAVTLANEVELLEFYKDSVRIIKYKAE-T-TPKLITYWIKEEFLGYLRQIALSPNQSIVTPRQLADLLKL 404 (505)
T ss_pred HHHhhccchhhhhhhhcchhHHHHHhhhhhhhhhccc-c-cccchHHHHHHHHHHHHhhccCCccccccChHHHHHHHHH
Confidence 3556999999999999998887777432 3333221 1 2232222211 11111111 0 12346777888
Q ss_pred HHhCCCCCHHhHHHHHHHHHhCCCc------cCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcc--cccchhh
Q psy17575 136 IVSKALDSTLRVDAALEYVLSHVNA------VNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKR--YRYNLGL 207 (832)
Q Consensus 136 I~~gklkt~~Ql~aAlkyl~~~~~~------~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~r--y~~n~g~ 207 (832)
+-++.|....-.+= +..+.++++. |....|..-| .|++|++.|..+|++|-..+++-| -.-.++.
T Consensus 405 l~~~~Is~~~ak~l-l~~l~~~~~~~~~s~LIeek~l~~I~------dp~eIe~lv~~vm~~h~k~ve~~rsGk~k~~~~ 477 (505)
T KOG2438|consen 405 LSEETISALSAKQL-LRHLLKNPGVMTVSILIEEKRLWQIR------DPAEIEELVRSVMEKHPKQVEQLRSGKTKSIKR 477 (505)
T ss_pred hhhhhhhHHHHHHH-HHHHHhCCCcCCHHHHHhhhhhhhcC------CHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 88888876332222 2223334432 4445555544 999999999999999988765433 3336778
Q ss_pred hHHHHHh-hCCCCChhhhHHHHHHHH
Q psy17575 208 VMQEVRT-LLKWADGKYIKSEVDVQV 232 (832)
Q Consensus 208 ll~~vR~-~LkWAd~k~vK~~vD~~~ 232 (832)
+.|.+.+ .-.-|++++++.++.+.+
T Consensus 478 l~G~vmk~s~g~a~p~~le~~l~~~L 503 (505)
T KOG2438|consen 478 LIGLVMKSSQGRANPKDLEKILEELL 503 (505)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHh
Confidence 8888865 788999999998887643
No 135
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=72.05 E-value=3.9 Score=46.72 Aligned_cols=48 Identities=13% Similarity=0.053 Sum_probs=33.8
Q ss_pred ccccccC-CCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC
Q psy17575 538 WEYGRLN-VNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ 601 (832)
Q Consensus 538 ~ef~hL~-l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~ 601 (832)
+-++++. ..|.|||||+++. .++..+.++ +.+.|++-|++..+-...+
T Consensus 331 ~~hg~v~~~~g~KMSKS~Gn~---------------v~~~dll~~-~g~Da~R~~ll~~~~~~~D 379 (382)
T cd00817 331 YLHGLVRDEDGRKMSKSLGNV---------------IDPLDVIDG-YGADALRFTLASAATQGRD 379 (382)
T ss_pred EeeeeEECCCCCCccccCCCC---------------CCHHHHHHh-cCcHHHHHHHHhCCCccCC
Confidence 3355565 7899999999742 256666665 7889999999876644333
No 136
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=70.48 E-value=15 Score=46.72 Aligned_cols=91 Identities=23% Similarity=0.197 Sum_probs=57.8
Q ss_pred CCCCCCcCchHHHHHHHHHHHHHHhcC--CEEE-------------------------EeccCCCcc----cc---cHHH
Q psy17575 325 PPEPNGILHIGHAKAININFGYAAAHN--GICF-------------------------LRYDDTNPE----KE---EEKF 370 (832)
Q Consensus 325 aPsPtG~LHIGharaaL~n~l~Ar~~g--G~~i-------------------------LRiDDTDp~----r~---~~e~ 370 (832)
||-.||.+|||||..=++=-...|.+. |.-+ -.|++...+ .| ..++
T Consensus 57 PPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~ 136 (933)
T COG0060 57 PPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQ 136 (933)
T ss_pred CCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHHH
Confidence 899999999999999888765555422 2211 112332221 12 2367
Q ss_pred HHHHHHHHHHcCC--CcCcccc--cchhHHHHHHHHHHHHHcCCccccC
Q psy17575 371 FTGIKDMVQWLGY--KPYQITH--SSDYFHQLYEWAVKLIKKGLAYVCH 415 (832)
Q Consensus 371 ~~~I~edL~WLGl--~pd~~~~--qSd~~~~~ye~A~~Li~~G~AY~C~ 415 (832)
++.-.++...||+ +|+.+|. .-+|.........++.++|+.|.-+
T Consensus 137 v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~~kGllyrg~ 185 (933)
T COG0060 137 VDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGY 185 (933)
T ss_pred HHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHHHHCCCeecCC
Confidence 7777889999996 4555443 3334444445556899999999754
No 137
>KOG0437|consensus
Probab=69.40 E-value=8.1 Score=47.38 Aligned_cols=69 Identities=25% Similarity=0.381 Sum_probs=46.3
Q ss_pred cCCceEEeeC-CCCCCcCchHHHHHHH---HHHHHHHhcCCEEEE--eccCCCcccccHHHHHHHHHHHHHcCCCcC
Q psy17575 316 TGGKVRTRFP-PEPNGILHIGHAKAIN---INFGYAAAHNGICFL--RYDDTNPEKEEEKFFTGIKDMVQWLGYKPY 386 (832)
Q Consensus 316 ~~~~v~tRFa-PsPtG~LHIGharaaL---~n~l~Ar~~gG~~iL--RiDDTDp~r~~~e~~~~I~edL~WLGl~pd 386 (832)
++++..+-|| |--||.||+||+.++- |.-.|-|-+|-..++ -|-.|.- -.....+.+.+.++-+|..||
T Consensus 42 ~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTGM--PI~A~AdKLkrEie~fG~ppd 116 (1080)
T KOG0437|consen 42 SKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTGM--PIKASADKLKREIELFGCPPD 116 (1080)
T ss_pred ccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccCCC--ccHHhHHHHHHHHHHhCCCCC
Confidence 3455556665 8889999999999865 334555555554444 3445542 234567888889999998876
No 138
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=66.59 E-value=7.5 Score=49.07 Aligned_cols=94 Identities=13% Similarity=0.054 Sum_probs=57.2
Q ss_pred ceeeecccccccchhHHHHHHh--cCCCCCC--cccccccC-CCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcC
Q psy17575 508 THSLCTKEFQSRRSSYYWLCNA--LDIYCPV--QWEYGRLN-VNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRG 582 (832)
Q Consensus 508 THvlRg~E~~~~~~~~~~L~~a--L~~~~P~--~~ef~hL~-l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG 582 (832)
+..+=|.|.+.... +.|++.. +.-..|. .+-.|++. .+|.|||||+++- | +...+.++
T Consensus 480 d~~~~G~Dii~fw~-~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKS~GN~------i---------~p~~~i~~- 542 (861)
T TIGR00422 480 DLLVTGYDIIFFWV-ARMIFRSLALTGQVPFKEVYIHGLVRDEQGRKMSKSLGNV------I---------DPLDVIEK- 542 (861)
T ss_pred ceeecchhhhhHHH-HHHHHHHHHhcCCCchheEEEeeEEECCCCCCCCcCCCCC------C---------CHHHHHHH-
Confidence 33445777554332 2344443 3234452 12234454 4799999999742 1 33444443
Q ss_pred CCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhhcc
Q psy17575 583 FPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLND 619 (832)
Q Consensus 583 ~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l~~ 619 (832)
|.+.|++-|++..+....+..|+++.+... +..+++
T Consensus 543 ygaDalR~~l~~~~~~~~d~~f~~~~~~~~-~~~~nk 578 (861)
T TIGR00422 543 YGADALRFTLASLVTPGDDINFDWKRVESA-RNFLNK 578 (861)
T ss_pred hChHHHHHHHHhCCCCCCCceecHHHHHHH-HHHHHH
Confidence 779999999999987788889999887764 334443
No 139
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=59.38 E-value=15 Score=46.06 Aligned_cols=94 Identities=15% Similarity=0.134 Sum_probs=55.5
Q ss_pred cceeeecccccccchhHHHHHHhcC--CCCCCcccc--ccc-CCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHc
Q psy17575 507 ITHSLCTKEFQSRRSSYYWLCNALD--IYCPVQWEY--GRL-NVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRR 581 (832)
Q Consensus 507 ITHvlRg~E~~~~~~~~~~L~~aL~--~~~P~~~ef--~hL-~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrr 581 (832)
.+-.+-|.|.+...- +.+++.++. -..|...-+ |++ ..+|.||||++++- .+...+.+.
T Consensus 487 ~d~~~~G~Di~~~w~-~~~l~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~---------------i~p~~~i~~ 550 (800)
T PRK13208 487 MDLRPQGHDIIRTWL-FYTILRAYLLTGKLPWKNIMISGMVLDPDGKKMSKSKGNV---------------VTPEELLEK 550 (800)
T ss_pred ceEEEeecchhhhHH-HHHHHHHHHhcCCCCcceEEEeeEEECCCCCCCCCCCCCC---------------CCHHHHHHH
Confidence 445556777653322 223333322 223421113 333 45899999999642 244555554
Q ss_pred CCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhhcc
Q psy17575 582 GFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLND 619 (832)
Q Consensus 582 G~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l~~ 619 (832)
+.+++++-|++ .+-...+..++++.+.. +++.+++
T Consensus 551 -yg~D~lR~~l~-~~~~~~d~~fs~~~~~~-~~~~l~k 585 (800)
T PRK13208 551 -YGADAVRYWAA-SARLGSDTPFDEKQVKI-GRRLLTK 585 (800)
T ss_pred -cCccHHHHHHh-cCCCCCCceecHHHHHH-HHHHHHH
Confidence 78999999998 66667788888888765 5555554
No 140
>PLN02943 aminoacyl-tRNA ligase
Probab=58.35 E-value=11 Score=48.12 Aligned_cols=59 Identities=15% Similarity=0.060 Sum_probs=41.9
Q ss_pred CCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhhccC
Q psy17575 544 NVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDT 620 (832)
Q Consensus 544 ~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l~~~ 620 (832)
..+|.||||++++- | +...+.++ |.|.+++-||+..+ ...+..++++.|.. +++.+++.
T Consensus 578 ~~~G~KMSKS~GN~------i---------~p~~~i~~-ygaDalR~~l~~~~-~~~d~~fs~~~l~~-~~~~~~kl 636 (958)
T PLN02943 578 DSQGRKMSKTLGNV------I---------DPLDTIKE-FGTDALRFTLALGT-AGQDLNLSTERLTS-NKAFTNKL 636 (958)
T ss_pred CCCCCcccCcCCCC------C---------CHHHHHHh-cCChHHHHHHHhCC-CCCCccccHHHHHH-HHHHHHHH
Confidence 45899999999642 1 33444443 88999999998765 46788899988876 46555543
No 141
>KOG2713|consensus
Probab=57.29 E-value=16 Score=40.42 Aligned_cols=69 Identities=19% Similarity=0.230 Sum_probs=45.2
Q ss_pred CCCCCcCchHHHHHHHHHHHHHH---hcCCEEEEeccCCCcc---cccHHHHHHHHHHH---HHcCCCcCc--ccccchh
Q psy17575 326 PEPNGILHIGHAKAININFGYAA---AHNGICFLRYDDTNPE---KEEEKFFTGIKDMV---QWLGYKPYQ--ITHSSDY 394 (832)
Q Consensus 326 PsPtG~LHIGharaaL~n~l~Ar---~~gG~~iLRiDDTDp~---r~~~e~~~~I~edL---~WLGl~pd~--~~~qSd~ 394 (832)
--|||.+||||-.-|+=+|---. ..|-.+++-|=|.-.- .....+-+++.++. -..|++|.+ ..+||+-
T Consensus 20 IQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp~~lrq~~~dm~A~lLAcGIdp~Ks~lF~QS~V 99 (347)
T KOG2713|consen 20 IQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVPQDPAELRQATHDMAASLLACGIDPEKSSLFVQSDV 99 (347)
T ss_pred cCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCCCChHHHHHHHHHHHHHHHHhccCcccceeeeeccc
Confidence 46999999999999999995433 3344577777776210 11124445555544 455999985 5678873
No 142
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=57.13 E-value=11 Score=48.38 Aligned_cols=59 Identities=15% Similarity=0.072 Sum_probs=41.9
Q ss_pred CCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhhcc
Q psy17575 545 VNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLND 619 (832)
Q Consensus 545 l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l~~ 619 (832)
.+|.|||||+++. | +...+.++ |.+.|++-|++..+....+..|+++.+-...+..+++
T Consensus 588 ~~G~KMSKSlGNv------I---------dP~dli~~-yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l~k 646 (975)
T PRK06039 588 EDGQKMSKSLGNY------V---------DPFEVFDK-YGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLT 646 (975)
T ss_pred CCCCCcCCCCCCc------C---------CHHHHHHH-hChHHHHHHHHhCCCCCCCceechhHHHHHHHHHHHH
Confidence 4799999999742 2 23334433 7789999999999877788899998844444444444
No 143
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=54.49 E-value=25 Score=44.42 Aligned_cols=96 Identities=14% Similarity=-0.035 Sum_probs=56.2
Q ss_pred cceeeeccccccc-chhHHHHHHhc-CCCCCCc-cccccc-CCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcC
Q psy17575 507 ITHSLCTKEFQSR-RSSYYWLCNAL-DIYCPVQ-WEYGRL-NVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRG 582 (832)
Q Consensus 507 ITHvlRg~E~~~~-~~~~~~L~~aL-~~~~P~~-~ef~hL-~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG 582 (832)
+...+=|.|++.. -...+|..-++ |..+|.. +-.+++ ..+|.||||++++- | +...+.+ .
T Consensus 565 ~d~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G~KMSKSkGNv------I---------~p~d~i~-~ 628 (861)
T TIGR00392 565 ADFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEKGRKMSKSLGNV------V---------DPLKVIN-K 628 (861)
T ss_pred ceEEEEecchhccHHHHHHHHHHHHcCCCChHhhEecceEECCCCCCcCCCCCCC------C---------CHHHHHH-H
Confidence 4455557776532 11223333333 4333321 113444 34899999999642 2 2333333 2
Q ss_pred CCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhhcc
Q psy17575 583 FPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLND 619 (832)
Q Consensus 583 ~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l~~ 619 (832)
|.++|++-|++.. -...+..|+++.+...++...+.
T Consensus 629 yGaDalR~~ll~~-~~~~D~~fs~~~l~~~~~~~~n~ 664 (861)
T TIGR00392 629 YGADILRLYVASS-DPWEDLRFSDEILKQVVEKYRKI 664 (861)
T ss_pred cCHHHHHHHHHhC-CCCCCceECHHHHHHHHHHHHHH
Confidence 7799999999988 56678899999987765545444
No 144
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.64 E-value=67 Score=35.91 Aligned_cols=86 Identities=16% Similarity=0.245 Sum_probs=67.7
Q ss_pred HHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHhhCCCCChhhhHH
Q psy17575 147 VDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKS 226 (832)
Q Consensus 147 l~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vR~~LkWAd~k~vK~ 226 (832)
|.|.|+++......-+..++++.| -=.|+++..+++-...- ....|+.-.+--|++-+|+.+-|.|+..=|.
T Consensus 206 l~a~i~ll~qaa~~~~~~~l~~~~----aadPdd~~aa~~lA~~~----~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ 277 (304)
T COG3118 206 LQAQIELLEQAAATPEIQDLQRRL----AADPDDVEAALALADQL----HLVGRNEAALEHLLALLRRDRGFEDGEARKT 277 (304)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHH----HhCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 567788877654446788888888 67888877666655444 5667777778889999999999999999888
Q ss_pred HHHHHHHhhcCCCccc
Q psy17575 227 EVDVQVLNLLGPKTEA 242 (832)
Q Consensus 227 ~vD~~~l~lLGPKte~ 242 (832)
-|+ +++++||.+..
T Consensus 278 lle--~f~~~g~~Dp~ 291 (304)
T COG3118 278 LLE--LFEAFGPADPL 291 (304)
T ss_pred HHH--HHHhcCCCCHH
Confidence 886 79999998874
No 145
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=49.14 E-value=25 Score=44.61 Aligned_cols=62 Identities=21% Similarity=0.254 Sum_probs=43.6
Q ss_pred cccC-CCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhhcc
Q psy17575 541 GRLN-VNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLND 619 (832)
Q Consensus 541 ~hL~-l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l~~ 619 (832)
|.+. .+|.||||++++- | || ..+.+. |.+.|+|-|++..+-...+..|+++.+... +..+++
T Consensus 511 G~v~d~~G~KMSKSlGNv------I----dP-----~dvi~~-yGaDalR~~ll~~~~~~~Di~fs~~~l~~~-~~~~nk 573 (874)
T PRK05729 511 GLVRDEQGRKMSKSKGNV------I----DP-----LDLIDK-YGADALRFTLAALASPGRDIRFDEERVEGY-RNFANK 573 (874)
T ss_pred eeEECCCCCCcccCCCCC------C----CH-----HHHHHH-hChHHHHHHHHhCCCCCCCceeCHHHHHHH-HHHHHH
Confidence 4443 6899999999742 2 33 233332 678999999999887777889999988665 345555
No 146
>COG1610 Uncharacterized conserved protein [Function unknown]
Probab=46.67 E-value=2.7e+02 Score=28.20 Aligned_cols=85 Identities=14% Similarity=0.194 Sum_probs=62.6
Q ss_pred cchHHHHHHHHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcccccchh
Q psy17575 127 IHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYRYNLG 206 (832)
Q Consensus 127 ~~r~~l~~~I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~ry~~n~g 206 (832)
.+|+-+..|=..|+-.=-++..+=+.-+...-+. -+|+++|..+|.+.|++--+...+ .+|
T Consensus 60 QRrdS~~~y~~agR~dLa~kE~~Ei~Ii~~ylP~--------------qLsd~e~~~~v~~aIae~Gas~~~-----dMG 120 (148)
T COG1610 60 QRRDSAEEYEKAGRQDLAAKERAEIAIIEEYLPQ--------------QLSEDELRALVDAAIAEVGASSMK-----DMG 120 (148)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHhHHHHHHHhCcc--------------cCCHHHHHHHHHHHHHHHHHhhHH-----HHH
Confidence 3577777888888776666666666666665211 388999999999999886665533 799
Q ss_pred hhHHHHHh-hCCCCChhhhHHHHHH
Q psy17575 207 LVMQEVRT-LLKWADGKYIKSEVDV 230 (832)
Q Consensus 207 ~ll~~vR~-~LkWAd~k~vK~~vD~ 230 (832)
++|+.++. .-.=||+..+...|-.
T Consensus 121 kvM~al~~k~~GkaD~~~vs~~VK~ 145 (148)
T COG1610 121 KVMKALKPKVAGKADGGRVSKLVKE 145 (148)
T ss_pred HHHHHHhHHhcccCcHHHHHHHHHH
Confidence 99999997 4567888887776654
No 147
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=45.82 E-value=25 Score=39.55 Aligned_cols=75 Identities=15% Similarity=0.037 Sum_probs=43.1
Q ss_pred eecccccccchh-HHHHHHhcCCCCC-C-ccccccc-CCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHH
Q psy17575 511 LCTKEFQSRRSS-YYWLCNALDIYCP-V-QWEYGRL-NVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPE 586 (832)
Q Consensus 511 lRg~E~~~~~~~-~~~L~~aL~~~~P-~-~~ef~hL-~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~Pe 586 (832)
+-|.|.+.+.-. .+|..-++.-..| . .+-.+.+ ..+|.||||++++. .++..+.+. +.++
T Consensus 257 ~~GkDii~~wf~~~~~~~~~~~~~~p~~~~~~hg~~~~~~g~KmSKS~gn~---------------i~~~~~~~~-~~~D 320 (338)
T cd00818 257 LEGSDQTRGWFYSLLLLSTALFGKAPYKNVIVHGFVLDEDGRKMSKSLGNY---------------VDPQEVVDK-YGAD 320 (338)
T ss_pred eecchHHhHHHHHHHHHHHHhcCCCccceEEEEeeEECCCCCCCCCCCCCc---------------CCHHHHHHH-cCcH
Confidence 448887743222 2233333222333 2 1223333 45799999999642 245666665 8999
Q ss_pred HHHHHHHHhCCCCCC
Q psy17575 587 AINKFCARMGVTGAQ 601 (832)
Q Consensus 587 AI~nfl~~lG~s~~~ 601 (832)
+++-|++..+-..++
T Consensus 321 ~~R~~l~~~~~~~~d 335 (338)
T cd00818 321 ALRLWVASSDVYAED 335 (338)
T ss_pred HHHHHHHhCCCccCC
Confidence 999999987643333
No 148
>PLN02959 aminoacyl-tRNA ligase
Probab=42.81 E-value=40 Score=43.89 Aligned_cols=91 Identities=18% Similarity=0.063 Sum_probs=53.3
Q ss_pred cceeeecccccccchhHHHHHHhcCC--CCCC---cccccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHc
Q psy17575 507 ITHSLCTKEFQSRRSSYYWLCNALDI--YCPV---QWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRR 581 (832)
Q Consensus 507 ITHvlRg~E~~~~~~~~~~L~~aL~~--~~P~---~~ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrr 581 (832)
++.-+=|.|++...-. ..|+....+ ..|. ..--|++..+|.||||++++- | ++..+.+
T Consensus 672 ~Dl~~sG~Dii~~wl~-~~l~~~~al~~~~P~p~~v~v~G~V~~~G~KMSKSkGNv------I---------~p~diI~- 734 (1084)
T PLN02959 672 FDLRVSGKDLIQNHLT-FAIYNHTAIWAEEHWPRGFRCNGHLMLNSEKMSKSTGNF------L---------TLRQAIE- 734 (1084)
T ss_pred CeEEEecccHHHHHHH-HHHHHHHHhcCCCCCCceEEEccEEecCCcCccccCCCc------C---------CHHHHHH-
Confidence 3444447776655332 233333221 2342 112466778999999999752 1 2333333
Q ss_pred CCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHH
Q psy17575 582 GFPPEAINKFCARMGVTGAQAVVSPNMLEAVVR 614 (832)
Q Consensus 582 G~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r 614 (832)
.|.+.|+|-|++..|-...+..|+++...++.+
T Consensus 735 kyGADalRl~la~~~~~~~D~nF~~k~~n~~~~ 767 (1084)
T PLN02959 735 EFSADATRFALADAGDGVDDANFVFETANAAIL 767 (1084)
T ss_pred HhCchHHHHHHhhcCCccCCCCccHHHHHHHHH
Confidence 388899999998876666677887765544433
No 149
>smart00422 HTH_MERR helix_turn_helix, mercury resistance.
Probab=41.72 E-value=50 Score=27.69 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=20.0
Q ss_pred hhhHHHHHHcCCCHHHHHHHHHHh
Q psy17575 572 LFTLTALRRRGFPPEAINKFCARM 595 (832)
Q Consensus 572 ~~tL~~lrrrG~~PeAI~nfl~~l 595 (832)
+-.+..||+.|+++++|...+..+
T Consensus 47 l~~i~~lr~~g~~~~~i~~~l~l~ 70 (70)
T smart00422 47 LRFIKRLKELGFSLEEIKELLELL 70 (70)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhcC
Confidence 456889999999999999887653
No 150
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=38.34 E-value=2.1e+02 Score=27.00 Aligned_cols=48 Identities=21% Similarity=0.301 Sum_probs=34.3
Q ss_pred HHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHH
Q psy17575 136 IVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKA 194 (832)
Q Consensus 136 I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~ 194 (832)
+..+.-+..+..+.|++|+... -... ||.+|++||+.+|++.+.+.+.
T Consensus 59 ~~~~~~~G~~K~~~A~~~v~~~---------L~~~--gi~~t~~~i~~~IEaAV~~m~~ 106 (108)
T PF09682_consen 59 VAKEGGKGEEKKAEAVQYVKER---------LKKK--GIKVTDEQIEGAIEAAVKEMND 106 (108)
T ss_pred HHhccCCcHHHHHHHHHHHHHH---------HHHc--CCCCCHHHHHHHHHHHHHHHhh
Confidence 3333337788899999888653 1222 5599999999999999887543
No 151
>KOG0433|consensus
Probab=37.98 E-value=70 Score=39.78 Aligned_cols=108 Identities=19% Similarity=0.245 Sum_probs=60.6
Q ss_pred HHHHHHhhhhcCC-ceEEeeCCCCCCcCchHHHHHHHHH-----HHHHHhcCCEEEEeccCCCcc------------cc-
Q psy17575 306 HDLLREHIKYTGG-KVRTRFPPEPNGILHIGHAKAININ-----FGYAAAHNGICFLRYDDTNPE------------KE- 366 (832)
Q Consensus 306 ~~~~~~hl~~~~~-~v~tRFaPsPtG~LHIGharaaL~n-----~l~Ar~~gG~~iLRiDDTDp~------------r~- 366 (832)
++.+.+.|...++ ..+.- +-+|-||+|||+--++- |..|....--+++=.|.---. .+
T Consensus 46 ~~~~~~qls~~q~~~f~L~---danG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~~ 122 (937)
T KOG0433|consen 46 PEILSSQLSDQQRVEFELK---DANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESEG 122 (937)
T ss_pred hHHHHHHHhhccCceEEEe---ccCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhccc
Confidence 5666666665443 22222 28999999999876653 555655554454433332111 11
Q ss_pred --------------cHHHHHHHHHHHHHcCCC--cCccc--ccchhHHHHHHHHHHHHHcCCccccCC
Q psy17575 367 --------------EEKFFTGIKDMVQWLGYK--PYQIT--HSSDYFHQLYEWAVKLIKKGLAYVCHQ 416 (832)
Q Consensus 367 --------------~~e~~~~I~edL~WLGl~--pd~~~--~qSd~~~~~ye~A~~Li~~G~AY~C~C 416 (832)
..+++..-++..+..|+- |..+| .+-+|--.-.+...+|.++|+.|+.+-
T Consensus 123 ~~s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~K 190 (937)
T KOG0433|consen 123 SRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYRSFK 190 (937)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhccceeccCC
Confidence 124555556667777874 44443 333332222233457999999998763
No 152
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=33.40 E-value=38 Score=44.04 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=40.3
Q ss_pred CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhhcc
Q psy17575 546 NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLND 619 (832)
Q Consensus 546 ~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l~~ 619 (832)
+|.||||++++- | ||. .+.+ .|.++++|-|++..+-...+..++++.|+.+ +++++.
T Consensus 535 ~G~KMSKSkGNv------I----dP~-----dvIe-~yGaDalR~~L~~~~~~g~D~~fs~~~l~~~-~~f~nk 591 (1052)
T PRK14900 535 KGQKMSKTKGNV------I----DPL-----VITE-QYGADALRFTLAALTAQGRDIKLAKERIEGY-RAFANK 591 (1052)
T ss_pred CCCCccCCCCCC------C----CHH-----HHHH-HhCcHHHHHHHHhcCCCCCCCcccHHHHHHH-HHHHHH
Confidence 799999999642 2 333 2222 3778999999998876778889998888654 345444
No 153
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.35 E-value=1.6e+02 Score=34.45 Aligned_cols=101 Identities=18% Similarity=0.274 Sum_probs=56.6
Q ss_pred cHHHHHHhhhhcCCceEEeeCCCCCC-cCchHHHHHHHHHHHHHHhcCCEEEEeccCC-----Ccc-----c---ccHHH
Q psy17575 305 THDLLREHIKYTGGKVRTRFPPEPNG-ILHIGHAKAININFGYAAAHNGICFLRYDDT-----NPE-----K---EEEKF 370 (832)
Q Consensus 305 ~~~~~~~hl~~~~~~v~tRFaPsPtG-~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-----Dp~-----r---~~~e~ 370 (832)
+.+.|.+.++.. +++.=..=.||| .|||||+..+..=-.|.. .|=+-++=|=|- ||. | ..+.+
T Consensus 20 ~ee~l~~ll~~~--~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~-aGh~~ivLigd~ta~IgDpsGk~e~r~~l~~e~v 96 (401)
T COG0162 20 DEEELRKLLEEG--PLRVYIGFDPTAPSLHLGHLVPLMKLRRFQD-AGHKPIVLIGDATAMIGDPSGKSEERKLLTRETV 96 (401)
T ss_pred cHHHHHHHHhcC--CceEEEeeCCCCCccchhhHHHHHHHHHHHH-CCCeEEEEecccceecCCCCCCHHHHhhccHHHH
Confidence 477888877754 555666667899 999999988775333333 332333323332 442 1 23344
Q ss_pred HHHHHHHHHHcCCCcC---cccccchhHHHHHHHHHHHHHcC
Q psy17575 371 FTGIKDMVQWLGYKPY---QITHSSDYFHQLYEWAVKLIKKG 409 (832)
Q Consensus 371 ~~~I~edL~WLGl~pd---~~~~qSd~~~~~ye~A~~Li~~G 409 (832)
.+.+....+.+|...+ ...+.|+.+..+ .+..-|.+-|
T Consensus 97 ~~n~~~i~~ql~~~ld~k~~~v~ns~w~~~~-~y~~~l~~~g 137 (401)
T COG0162 97 LENAETIKKQLGKFLDNKAEFVNNSDWLKKL-NYLDFLRDVG 137 (401)
T ss_pred HHHHHHHHHHhcccCCcceEEEechHHhCcC-CHHHHHHHHH
Confidence 4556666666775555 456667655431 2333344434
No 154
>COG3372 Predicted nuclease of restriction endonuclease-like fold [General function prediction only]
Probab=31.25 E-value=1.7e+02 Score=33.99 Aligned_cols=122 Identities=16% Similarity=0.192 Sum_probs=83.8
Q ss_pred ccCcccccccchhhHHHHHHHHHh-CCCCchhhHHhh------cCHhHHHHHHHHHHHhc-cc-CCC-CcchhhhHHHHH
Q psy17575 48 QNEPKVVSNIMTEIADSMISAFLS-VGLNEKKAKETL------KNETLSTYLKQAIEEAS-KI-SPH-SLQDCGSLLYHL 117 (832)
Q Consensus 48 ~m~p~~~~~~~~~~~~~l~~lF~~-iGL~e~kAketl------KN~kls~~L~~iI~ea~-~~-~~~-~dk~~g~LLy~l 117 (832)
.+-|.+-+..--++++++++.|++ +|.+-..-.|.+ +|-|+-.-|..+++.-- .. .+. -+......|+++
T Consensus 15 ~I~P~~~~~~~~~lA~evI~~Fks~~Gkt~geL~e~l~~le~~~~~K~VRGlA~iler~c~fe~~s~~dp~~~R~~lFe~ 94 (396)
T COG3372 15 RIRPLFADPEDLDLAEEVIETFKSSLGKTYGELEEDLRDLEYAAKDKLVRGLAKILERECEFEVVSALDPREVRRFLFER 94 (396)
T ss_pred eEeeeecChhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHhheeeeecccCChHHHHHHHHhc
Confidence 455655443333467899999997 998754433332 22267777777775332 22 233 456678889999
Q ss_pred HhhccCCCccchHHHHHHHHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHH
Q psy17575 118 ASKIKSQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDI 181 (832)
Q Consensus 118 Atk~k~~~~~~r~~l~~~I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI 181 (832)
| ...+..+|..+.+.+++.==.|.+|+..|+ |- +.+++.+-..|+ .+|||++
T Consensus 95 g---~~~s~eer~~vl~~aA~~fsvs~eeie~al-ya-----Dleeek~L~~~p---~itPe~L 146 (396)
T COG3372 95 G---PALSEEERQRVLQEAADHFSVSPEEIEDAL-YA-----DLEEEKILVEFP---DITPEWL 146 (396)
T ss_pred C---CCCChHHHHHHHHHHHHHhCCCHHHHHHHH-Hh-----ccchhheeccCC---CCCHHHH
Confidence 8 445557899999999999888999999998 32 356777777776 8999984
No 155
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=29.64 E-value=1.5e+02 Score=30.62 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=22.4
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCC
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTN 362 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTD 362 (832)
+.+||-| +|+||+..+.. .+++ -+++++=+-.-+
T Consensus 4 ~~GrF~P-----~H~GHl~~i~~--a~~~--~~~vii~i~s~~ 37 (181)
T cd02168 4 YIGRFQP-----FHNGHLAVVLI--ALEK--AKKVIILIGSAR 37 (181)
T ss_pred EeeccCC-----CCHHHHHHHHH--HHHH--CCeEEEEeCCCC
Confidence 5689999 89999975543 3333 337777664443
No 156
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=29.44 E-value=1.1e+02 Score=32.13 Aligned_cols=40 Identities=20% Similarity=0.388 Sum_probs=27.2
Q ss_pred CceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccc
Q psy17575 318 GKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKE 366 (832)
Q Consensus 318 ~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~ 366 (832)
|-+++||-| +|+||+..+. +.+.+.- ..|+=|---+..+.
T Consensus 7 ~v~iGRFQP-----fH~GHl~~I~--~al~~~d--evII~IGSA~~s~t 46 (196)
T PRK13793 7 LVFIGRFQP-----FHLAHMQTIE--IALQQSR--YVILALGSAQMERN 46 (196)
T ss_pred EEEEecCCC-----CcHHHHHHHH--HHHHhCC--EEEEEEccCCCCCC
Confidence 457899999 8999996544 4444432 77777766665554
No 157
>PLN02207 UDP-glycosyltransferase
Probab=27.96 E-value=90 Score=36.95 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=44.8
Q ss_pred HHHHcCCcE------------EeCHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHhhCCCCChhhhHHHHHHHHH
Q psy17575 166 LEASCGVGV------------IVTSEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVL 233 (832)
Q Consensus 166 Fe~~cGVGV------------~VT~EqI~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vR~~LkWAd~k~vK~~vD~~~l 233 (832)
..+.-|||| .|+.|+|+++|++++.+ + .++|+-|.-.+-..+|+. .++|..=...++.-+.
T Consensus 389 ~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~----~~~~r~~a~~l~~~a~~A--~~~GGSS~~~l~~~v~ 461 (468)
T PLN02207 389 MVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-D----NNVVRKRVMDISQMIQRA--TKNGGSSFAAIEKFIH 461 (468)
T ss_pred HHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc-c----hHHHHHHHHHHHHHHHHH--hcCCCcHHHHHHHHHH
Confidence 355588887 36999999999999962 1 234555566666666653 3344444456777777
Q ss_pred hhcCCCc
Q psy17575 234 NLLGPKT 240 (832)
Q Consensus 234 ~lLGPKt 240 (832)
++.|=||
T Consensus 462 ~~~~~~~ 468 (468)
T PLN02207 462 DVIGIKT 468 (468)
T ss_pred HHHhccC
Confidence 7777654
No 158
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=24.90 E-value=54 Score=26.36 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=19.7
Q ss_pred HHHHHHHHHhCCCCchhhHHhhcCH
Q psy17575 62 ADSMISAFLSVGLNEKKAKETLKNE 86 (832)
Q Consensus 62 ~~~l~~lF~~iGL~e~kAketlKN~ 86 (832)
.+|.++-+.++|++++.|..+++.-
T Consensus 3 ~~d~~~AL~~LGy~~~e~~~av~~~ 27 (47)
T PF07499_consen 3 LEDALEALISLGYSKAEAQKAVSKL 27 (47)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 4678899999999999998876643
No 159
>PLN02882 aminoacyl-tRNA ligase
Probab=22.67 E-value=80 Score=41.59 Aligned_cols=54 Identities=15% Similarity=0.170 Sum_probs=34.9
Q ss_pred CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCC-CCCcccCHHHHHHHHHH
Q psy17575 546 NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVT-GAQAVVSPNMLEAVVRE 615 (832)
Q Consensus 546 ~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s-~~~~~~~~~~le~~~r~ 615 (832)
+|.||||++++. | ||. .-+. .|-+.|+|-|++..... ..+..|+++.+....++
T Consensus 611 ~G~KMSKSlGNv------I----dP~----evi~--~YGADaLR~~Ll~s~~~~~~d~~fs~~~v~~~~~~ 665 (1159)
T PLN02882 611 DGKKMSKSLKNY------P----DPN----EVID--KYGADALRLYLINSPVVRAEPLRFKEEGVFGVVKD 665 (1159)
T ss_pred CCCCcccCCCCC------C----CHH----HHHH--HhCcHHHHHHHHhCCcccCcCcccCHHHHHHHHHH
Confidence 699999999752 2 442 2233 36689999999876654 34457777666554443
No 160
>COG4720 Predicted membrane protein [Function unknown]
Probab=22.32 E-value=46 Score=34.44 Aligned_cols=30 Identities=33% Similarity=0.614 Sum_probs=24.5
Q ss_pred EeeC-CCCCCcCchHHHHHHHHHHHHHHhcC
Q psy17575 322 TRFP-PEPNGILHIGHAKAININFGYAAAHN 351 (832)
Q Consensus 322 tRFa-PsPtG~LHIGharaaL~n~l~Ar~~g 351 (832)
+|+| |-|+|++|+|.+--++++++|-...|
T Consensus 26 i~IPtp~~~~~i~L~da~i~las~lfGs~~G 56 (177)
T COG4720 26 IRIPTPIPNGFLTLGDAGIALASFLFGSRAG 56 (177)
T ss_pred eEecCCCCCCeeeHHHHHHHHHHHHHcchHH
Confidence 4554 66679999999999999999876655
No 161
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=21.55 E-value=70 Score=30.39 Aligned_cols=23 Identities=17% Similarity=0.624 Sum_probs=14.0
Q ss_pred CCcEEeCHHHHHHHHHHHHHHHH
Q psy17575 171 GVGVIVTSEDIEETVSKVVEKHK 193 (832)
Q Consensus 171 GVGV~VT~EqI~~~V~~~i~~~k 193 (832)
=.||.||++||.++|..+...|.
T Consensus 62 ~~gI~vsd~evd~~i~~ia~~n~ 84 (118)
T PF09312_consen 62 RLGIKVSDEEVDEAIANIAKQNN 84 (118)
T ss_dssp HCT----HHHHHHHHHHHHHHTT
T ss_pred HcCCCCCHHHHHHHHHHHHHHcC
Confidence 46888889998888887766543
No 162
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=21.20 E-value=60 Score=33.56 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=37.3
Q ss_pred CceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCccc------ccHHHHHHHHHHHHHcCCCc
Q psy17575 318 GKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEK------EEEKFFTGIKDMVQWLGYKP 385 (832)
Q Consensus 318 ~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r------~~~e~~~~I~edL~WLGl~p 385 (832)
|-+++||-| +|.||+..+.. .+.+ -..+++=|--.+... ...|-...|.+.|+-.|+..
T Consensus 6 gv~~GRFqP-----~H~GHl~vi~~--al~~--vDeliI~iGSa~~~~t~~nPfTagER~~mi~~~L~~~~~~~ 70 (172)
T COG1056 6 GVYFGRFQP-----LHTGHLYVIKR--ALSK--VDELIIVIGSAQESHTLKNPFTAGERIPMIRDRLREAGLDL 70 (172)
T ss_pred EEEEeccCC-----ccHhHHHHHHH--HHHh--CCEEEEEEccCcccccccCCCCccchhHHHHHHHHhcCCCc
Confidence 558999999 99999986543 3333 455555443332221 23355677888888777764
No 163
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=20.58 E-value=1.1e+02 Score=39.01 Aligned_cols=47 Identities=19% Similarity=0.170 Sum_probs=34.1
Q ss_pred ccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHH
Q psy17575 549 VVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEA 611 (832)
Q Consensus 549 kLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~ 611 (832)
|||||+++- .++..+.++ |.+.|++-|++..+-...+..++.+.++.
T Consensus 604 KMSKS~GN~---------------v~p~~ii~~-ygaDalRl~~l~~~~~~~d~~~~~~~l~~ 650 (842)
T TIGR00396 604 KMSKSKGNG---------------IDPQEIVKK-HGADALRLYIMFMGPIAASLEWNDSGLEG 650 (842)
T ss_pred hhhhcCCCc---------------CCHHHHHHH-cCchHHHHHHHhcCCcCCCCccCHHHHHH
Confidence 999999742 245555553 77999999999877666677777777654
No 164
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=20.08 E-value=2.1e+02 Score=36.73 Aligned_cols=51 Identities=14% Similarity=0.192 Sum_probs=35.4
Q ss_pred CCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHH
Q psy17575 544 NVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEA 611 (832)
Q Consensus 544 ~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~ 611 (832)
..+|.||||++++- | ||. .+.+ .|-++++|-|++. +-...+..++.+.|..
T Consensus 587 d~~G~KMSKSlGNv------I----dP~-----~ii~-~yGaDalR~~ll~-~~~~~D~~~s~~~l~~ 637 (912)
T PRK05743 587 DGKGRKMSKSLGNV------I----DPQ-----DVIK-KYGADILRLWVAS-TDYSGDVRISDEILKQ 637 (912)
T ss_pred CCCCCCCCCCCCCc------C----CHH-----HHHH-hcChHHHHHHHHh-cCCCCCeeecHHHHHH
Confidence 34799999999752 2 332 2222 4789999999997 5456677888776654
Done!