Query psy17575
Match_columns 832
No_of_seqs 383 out of 2196
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 17:04:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17575.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17575hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qtq_A GLNRS, protein (glutami 100.0 5E-140 2E-144 1200.4 46.3 518 306-831 12-550 (553)
2 2hz7_A Glutaminyl-tRNA synthet 100.0 4E-136 1E-140 1210.1 47.7 519 306-831 52-633 (851)
3 3aii_A Glutamyl-tRNA synthetas 100.0 5E-119 2E-123 1026.9 36.6 444 313-811 90-543 (553)
4 4gri_A Glutamate--tRNA ligase; 100.0 6.6E-74 2.3E-78 657.3 15.7 293 318-640 23-347 (512)
5 2ja2_A Glutamyl-tRNA synthetas 100.0 9.5E-72 3.2E-76 635.0 16.4 291 317-640 4-331 (498)
6 1j09_A Glutamyl-tRNA synthetas 100.0 1.3E-71 4.5E-76 630.8 15.6 290 319-640 1-317 (468)
7 4g6z_A Glutamate-tRNA ligase; 100.0 2.2E-70 7.4E-75 621.3 15.9 290 317-640 23-337 (490)
8 2cfo_A Glutamyl-tRNA synthetas 100.0 8.5E-69 2.9E-73 611.1 17.9 285 319-640 1-322 (492)
9 3afh_A Glutamyl-tRNA synthetas 100.0 1.8E-68 6.3E-73 607.5 12.5 285 316-640 22-328 (488)
10 3al0_C Glutamyl-tRNA(Gln) amid 100.0 1.1E-65 3.9E-70 596.2 10.7 284 318-640 128-432 (592)
11 2o5r_A Glutamyl-tRNA synthetas 100.0 7.7E-63 2.6E-67 561.3 15.3 291 319-640 13-336 (481)
12 1nzj_A Hypothetical protein YA 100.0 3.7E-60 1.3E-64 510.1 17.4 259 317-614 3-276 (298)
13 3tl4_X Glutaminyl-tRNA synthet 100.0 2.2E-56 7.5E-61 449.1 19.5 181 62-244 4-186 (187)
14 1irx_A Lysyl-tRNA synthetase; 99.9 1.4E-26 4.9E-31 266.3 4.9 274 319-638 21-352 (523)
15 1li5_A Cysrs, cysteinyl-tRNA s 99.8 5.6E-19 1.9E-23 200.5 16.6 253 325-614 29-314 (461)
16 2csx_A Methionyl-tRNA syntheta 99.7 7.3E-18 2.5E-22 192.4 11.8 266 319-615 7-345 (497)
17 3tqo_A Cysteinyl-tRNA syntheta 99.7 2.5E-16 8.6E-21 178.5 14.8 252 325-613 32-316 (462)
18 3c8z_A Cysteinyl-tRNA syntheta 99.7 3.3E-16 1.1E-20 175.5 15.0 265 323-615 44-341 (414)
19 2dlc_X Tyrosyl-tRNA synthetase 99.6 3.8E-16 1.3E-20 174.1 10.5 192 305-556 25-234 (394)
20 2d5b_A Methionyl-tRNA syntheta 99.6 3.7E-15 1.3E-19 170.0 14.3 274 320-614 6-346 (500)
21 3sp1_A Cysteinyl-tRNA syntheta 99.5 1.6E-13 5.5E-18 156.6 16.6 256 325-615 49-349 (501)
22 3h99_A Methionyl-tRNA syntheta 99.4 2.9E-12 1E-16 148.4 16.0 277 320-621 21-403 (560)
23 1iq0_A Arginyl-tRNA synthetase 99.4 5.4E-13 1.8E-17 155.8 9.7 246 325-612 111-465 (592)
24 2cyb_A Tyrosyl-tRNA synthetase 99.4 1.6E-12 5.6E-17 141.2 12.3 189 306-554 20-219 (323)
25 1n3l_A Tyrosyl-tRNA synthetase 99.4 1.3E-12 4.5E-17 144.7 10.2 191 306-556 24-229 (372)
26 2x1l_A Methionyl-tRNA syntheta 99.3 5.5E-12 1.9E-16 144.9 14.6 278 320-615 15-360 (524)
27 4dlp_A Aminoacyl-tRNA syntheta 99.3 4.1E-12 1.4E-16 146.5 10.0 282 320-619 28-376 (536)
28 3fnr_A Arginyl-tRNA synthetase 99.0 4.3E-10 1.5E-14 127.8 10.3 223 317-611 29-330 (464)
29 3kfl_A Methionyl-tRNA syntheta 98.9 9.1E-10 3.1E-14 127.9 8.1 96 319-414 28-143 (564)
30 1f7u_A Arginyl-tRNA synthetase 98.8 2.7E-09 9.4E-14 124.9 7.1 189 317-556 142-414 (607)
31 2zue_A Arginyl-tRNA synthetase 98.7 8.8E-09 3E-13 121.2 6.4 47 368-414 247-295 (629)
32 3u1f_A Methionyl-tRNA syntheta 98.6 2E-08 6.8E-13 115.6 6.9 94 320-413 12-125 (542)
33 1rqg_A Methionyl-tRNA syntheta 98.6 9.4E-08 3.2E-12 114.2 12.3 94 320-413 5-119 (722)
34 2cya_A Tyrosyl-tRNA synthetase 98.5 1.9E-07 6.4E-12 103.2 10.5 192 305-554 22-243 (364)
35 2zp1_A Tyrosyl-tRNA synthetase 98.5 1.9E-07 6.6E-12 101.1 8.2 110 306-424 17-133 (314)
36 2g36_A Tryptophanyl-tRNA synth 98.4 1.1E-06 3.7E-11 96.3 12.7 179 322-556 15-212 (340)
37 1i6k_A TRPRS, tryptophanyl-tRN 98.3 1.4E-06 4.6E-11 95.1 8.4 176 320-556 4-199 (328)
38 2yy5_A Tryptophanyl-tRNA synth 98.2 4.2E-07 1.5E-11 99.8 3.9 182 320-556 7-209 (348)
39 2el7_A Tryptophanyl-tRNA synth 98.1 5.4E-06 1.8E-10 90.7 8.3 88 328-423 10-108 (337)
40 1yi8_B Tryptophanyl-tRNA synth 98.0 4.2E-06 1.4E-10 92.0 6.6 180 318-556 23-222 (351)
41 1wkb_A Leucyl-tRNA synthetase; 97.5 0.00017 6E-09 87.0 9.2 95 319-413 36-178 (810)
42 2v0c_A Aminoacyl-tRNA syntheta 97.4 0.0002 6.8E-09 87.4 8.8 94 320-413 36-151 (878)
43 4arc_A Leucine--tRNA ligase; l 97.3 0.00039 1.3E-08 84.7 8.6 95 320-414 56-172 (880)
44 3jxe_A Tryptophanyl-tRNA synth 97.0 0.0024 8.2E-08 71.2 10.4 191 298-556 53-260 (392)
45 1h3f_A Tyrosyl-tRNA synthetase 96.9 0.0043 1.5E-07 70.0 11.9 190 306-555 25-238 (432)
46 1ile_A Ilers, isoleucyl-tRNA s 96.8 0.00048 1.6E-08 83.5 3.9 90 322-413 43-173 (821)
47 3al0_B Aspartyl/glutamyl-tRNA( 96.8 0.0092 3.1E-07 68.0 13.2 159 65-232 306-479 (482)
48 3ip4_B Aspartyl/glutamyl-tRNA( 96.7 0.017 5.8E-07 65.8 15.1 165 64-236 298-476 (483)
49 1gax_A Valrs, valyl-tRNA synth 96.7 0.0025 8.5E-08 77.7 8.8 95 320-414 37-169 (862)
50 2ip1_A Tryptophanyl-tRNA synth 96.7 0.0048 1.6E-07 69.6 10.3 104 297-403 81-198 (432)
51 1wz2_A Leucyl-tRNA synthetase; 96.7 0.0012 4E-08 81.4 5.5 95 320-414 37-179 (967)
52 1ffy_A Isoleucyl-tRNA syntheta 96.5 0.0024 8.4E-08 78.2 6.6 95 320-414 51-179 (917)
53 2cyc_A Tyrosyl-tRNA synthetase 96.0 0.0086 3E-07 66.3 7.0 111 306-423 21-148 (375)
54 2jan_A Tyrosyl-tRNA synthetase 96.0 0.014 4.9E-07 65.7 8.7 193 306-556 21-238 (432)
55 3i05_A Tryptophanyl-tRNA synth 95.9 0.008 2.7E-07 67.1 6.5 97 298-396 58-165 (395)
56 3hzr_A Tryptophanyl-tRNA synth 95.8 0.017 5.9E-07 64.2 8.6 105 297-404 61-176 (386)
57 3tzl_A Tryptophanyl-tRNA synth 95.6 0.01 3.6E-07 64.4 5.8 88 327-423 11-106 (322)
58 3h0l_B Aspartyl/glutamyl-tRNA( 95.4 0.021 7E-07 65.1 7.4 161 64-232 301-475 (478)
59 3foc_A Tryptophanyl-tRNA synth 95.2 0.031 1.1E-06 63.3 8.0 118 297-423 70-201 (451)
60 3hv0_A Tryptophanyl-tRNA synth 95.2 0.039 1.3E-06 61.5 8.4 103 297-402 53-168 (393)
61 1zq1_C Glutamyl-tRNA(Gln) amid 95.1 0.012 4.2E-07 68.8 4.4 162 64-235 461-630 (633)
62 3a04_A Tryptophanyl-tRNA synth 95.1 0.021 7.3E-07 63.1 5.9 95 319-423 72-176 (372)
63 3p0j_A Tyrosyl-tRNA synthetase 94.9 0.11 3.6E-06 62.0 11.5 190 306-555 28-236 (690)
64 2j5b_A Tyrosyl-tRNA synthetase 94.4 0.11 3.6E-06 57.0 9.3 88 306-395 28-127 (348)
65 3prh_A Tryptophanyl-tRNA synth 94.0 0.082 2.8E-06 58.8 7.4 93 320-424 38-139 (388)
66 1jil_A Tyrrs, tyrosyl-tRNA syn 93.7 0.28 9.5E-06 55.1 11.2 220 306-596 21-272 (420)
67 3sz3_A Tryptophanyl-tRNA synth 93.2 0.11 3.9E-06 56.7 6.7 95 319-424 8-110 (341)
68 2d6f_C Glutamyl-tRNA(Gln) amid 93.0 0.02 6.7E-07 67.0 0.3 159 63-232 448-615 (619)
69 3tze_A Tryptophanyl-tRNA synth 92.8 0.14 4.7E-06 57.3 6.9 98 297-396 80-188 (406)
70 3vgj_A Tyrosyl-tRNA synthetase 92.0 0.48 1.6E-05 52.4 9.8 88 306-395 44-143 (373)
71 3n9i_A Tryptophanyl-tRNA synth 91.9 0.2 6.8E-06 55.0 6.5 92 320-423 18-118 (346)
72 1r6t_A Tryptophanyl-tRNA synth 91.3 0.34 1.2E-05 55.2 7.8 100 295-396 132-242 (477)
73 2hz7_A Glutaminyl-tRNA synthet 90.9 0.044 1.5E-06 66.3 0.0 156 67-231 686-849 (851)
74 1ng6_A Hypothetical protein YQ 90.6 0.86 3E-05 44.0 8.8 52 175-231 94-146 (148)
75 1r6u_A Tryptophanyl-tRNA synth 89.4 0.66 2.3E-05 52.4 8.0 99 296-396 86-195 (437)
76 2yxn_A Tyrosyl-tRNA synthetase 88.3 0.3 1E-05 52.9 4.1 87 306-395 22-130 (322)
77 3p0j_A Tyrosyl-tRNA synthetase 86.9 1.4 4.7E-05 52.5 9.0 86 320-406 383-484 (690)
78 1y42_X Tyrosyl-tRNA synthetase 79.4 5.6 0.00019 44.2 9.4 52 306-360 53-105 (392)
79 1ile_A Ilers, isoleucyl-tRNA s 77.7 2.7 9.3E-05 50.8 6.8 98 507-620 545-646 (821)
80 2pid_A Tyrosyl-tRNA synthetase 77.4 1.6 5.3E-05 48.0 4.1 83 506-596 210-295 (356)
81 2ts1_A Tyrosyl-tRNA synthetase 75.6 3.6 0.00012 46.2 6.4 88 306-396 19-128 (419)
82 1wkb_A Leucyl-tRNA synthetase; 74.4 3.3 0.00011 49.9 6.2 91 506-612 603-697 (810)
83 1wz2_A Leucyl-tRNA synthetase; 72.3 5.1 0.00018 49.4 7.3 90 507-612 604-697 (967)
84 3mse_B Calcium-dependent prote 48.5 74 0.0025 29.8 9.3 44 144-188 107-151 (180)
85 1h8b_A ACT-EF34, alpha-actinin 42.0 36 0.0012 28.8 5.2 41 140-187 5-46 (75)
86 1gax_A Valrs, valyl-tRNA synth 39.3 41 0.0014 41.0 7.1 53 544-612 523-575 (862)
87 2ot3_A RAB5 GDP/GTP exchange f 32.6 64 0.0022 33.8 6.5 68 104-171 187-263 (274)
88 1ffy_A Isoleucyl-tRNA syntheta 31.7 26 0.00088 43.0 3.7 55 540-611 585-640 (917)
89 2d8n_A Recoverin; structural g 28.0 2.6E+02 0.009 26.2 9.6 107 62-170 18-133 (207)
90 2lmt_A Calmodulin-related prot 27.5 1.8E+02 0.0062 26.1 7.9 48 141-188 79-128 (148)
91 3khe_A Calmodulin-like domain 25.5 65 0.0022 29.9 4.6 47 141-188 119-166 (191)
92 3ox6_A Calcium-binding protein 24.7 3.2E+02 0.011 23.7 8.9 45 144-188 87-134 (153)
93 3cuq_A Vacuolar-sorting protei 24.6 1.1E+02 0.0036 31.8 6.2 152 64-230 14-191 (234)
94 2f40_A Hypothetical protein PF 24.3 28 0.00096 30.9 1.5 20 349-368 6-25 (96)
95 2v0c_A Aminoacyl-tRNA syntheta 23.9 59 0.002 39.7 4.8 49 548-612 636-684 (878)
96 2lv7_A Calcium-binding protein 22.8 37 0.0013 29.7 2.1 42 146-187 37-80 (100)
97 4fp9_B Mterf domain-containing 22.5 3.5E+02 0.012 29.1 10.1 142 62-232 46-192 (335)
98 3i5g_C Myosin catalytic light 22.2 95 0.0033 28.9 5.0 47 141-187 81-129 (159)
99 3u0k_A Rcamp; fluorescent prot 22.2 2.3E+02 0.008 31.9 8.8 47 142-188 372-420 (440)
100 4arc_A Leucine--tRNA ligase; l 21.6 56 0.0019 39.9 4.0 48 549-612 639-686 (880)
101 2kz2_A Calmodulin, CAM; TR2C, 21.5 1.3E+02 0.0044 25.3 5.3 59 127-187 13-73 (94)
102 3pm8_A PFCDPK2, calcium-depend 20.8 60 0.002 31.2 3.3 60 129-188 113-176 (197)
103 3u43_A Colicin-E2 immunity pro 20.7 1.4E+02 0.0048 26.7 5.3 59 131-192 17-78 (94)
104 3fs7_A Parvalbumin, thymic; ca 20.4 3.2E+02 0.011 22.8 7.7 48 141-188 38-90 (109)
105 2pid_A Tyrosyl-tRNA synthetase 20.3 2.2E+02 0.0075 31.0 8.0 62 320-385 49-127 (356)
106 3lvy_A Carboxymuconolactone de 20.0 6.3E+02 0.022 24.8 13.1 123 63-189 39-180 (207)
No 1
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=100.00 E-value=4.7e-140 Score=1200.45 Aligned_cols=518 Identities=44% Similarity=0.801 Sum_probs=482.4
Q ss_pred HHHHHHhhhhc-CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCC
Q psy17575 306 HDLLREHIKYT-GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYK 384 (832)
Q Consensus 306 ~~~~~~hl~~~-~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~ 384 (832)
.+++++.|+.. .++||||||||||||||||||||||+||++||++||+|+||||||||+|+.++|+++|++||+|||+.
T Consensus 12 ~~~i~~dl~~~~~~~v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDTD~~R~~~e~~~~I~edL~wLGl~ 91 (553)
T 1qtq_A 12 RQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFH 91 (553)
T ss_dssp HHHHHHHHHHTSCSSCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhHhhcCCcCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCchhcCHHHHHHHHHHHHHcCCC
Confidence 56777777764 34799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-cccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccC------CCCCCCCCCChhHhHHHHHHHHcCcccCCCce
Q psy17575 385 PY-QITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN------PLPSPWRERPVEENVKLFEAMKNGLIDEGEAT 457 (832)
Q Consensus 385 pd-~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~------~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~ 457 (832)
|+ .+++||+||++||++|++||++|+||+|+||++||++++ +..|+||+++++|++.+|++|.+|.+.+|+++
T Consensus 92 wde~~~~qSer~~~~~~~a~~Li~~G~AY~c~ct~eel~~~r~~~~~~g~~~~~R~~s~ee~~~~fe~m~~G~~~~g~~~ 171 (553)
T 1qtq_A 92 WSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKAC 171 (553)
T ss_dssp CSSSCEEGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHHHHHHHHHHTTCSCTTSCE
T ss_pred CCCCCeehcccHHHHHHHHHHHHHCCCceecCCCHHHHHHHhcccccCCCCCccccCchhhhHhHHHHHhCCCccCCceE
Confidence 96 789999999999999999999999999999999998653 34678999999999999999999999999999
Q ss_pred EEEEecccCC---CCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCC-
Q psy17575 458 LRMKITLEEG---KQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIY- 533 (832)
Q Consensus 458 lR~K~~~~~~---~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~- 533 (832)
||+|+++.+. ..|+|+||+...+|++++|.|++|||||||||||||+|||||||||+||.+|+++|.||+++||++
T Consensus 172 lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w~g~PtY~la~vvDDh~~GITHviRg~e~~~n~~~q~~l~~alg~~~ 251 (553)
T 1qtq_A 172 LRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPV 251 (553)
T ss_dssp EEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHTTCSEEEEEGGGTTTHHHHHHHHHTSCCSC
T ss_pred EEEecccccCCCCCCCcEEEEecCCCCCccCCCCccccccccccEEEeccCCcceEeeccchhhhHHHHHHHHHHcCCCC
Confidence 9999998754 379999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHH
Q psy17575 534 CPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVV 613 (832)
Q Consensus 534 ~P~~~ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~ 613 (832)
.|.||+|+||+++|+|||||+++++|++|.|+||||||++||++||++||+|+||++||+.+||+..+..+++..|++++
T Consensus 252 ~P~~~~f~hLn~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG~s~~~~~~e~~~le~~~ 331 (553)
T 1qtq_A 252 HPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCI 331 (553)
T ss_dssp CCEEEEECCCCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCCCSSCCCBCHHHHHHHH
T ss_pred CCCeEEEEeecCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcCCCCCccccchhhHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCceeEEecCcceEEeecCCCCceeEEeecCCCCCCCCceeEEeecceeEEeCCccccccccCccccCCCCee
Q psy17575 614 REVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGV 693 (832)
Q Consensus 614 r~~l~~~a~R~~av~dp~kl~i~N~~~~~~~~~~~~p~~P~~~~~G~~~v~~~~~iyIe~~D~~~~~~~~~~rL~~~~~V 693 (832)
|..|++.++|+|||+||+||.|+|+| +.++.+++|+||+++++|+|.++|+++||||++||++.++++||||+||++|
T Consensus 332 ~~~l~~~~~r~~av~d~~Kl~~~N~~--~~~~~~~~p~~p~~~~~g~r~~~~~~~i~ie~~Df~e~~~~~~~rl~~g~~v 409 (553)
T 1qtq_A 332 REDLNENAPRAMAVIDPVKLVIENYQ--GEGEMVTMPNHPNKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLVLGKEV 409 (553)
T ss_dssp HHHHHHHSCEECEESSEEEEEBTTCC--SSCEEEEEESCSSCGGGCEEEEEECSEEEEETTTEESSCCTTCCSEETTSEE
T ss_pred HhCcccccccccceeccceEEEEcCC--CceEEEEecCCCCChHHhhhhHhhCceEEEEHHHhhccCccccccCCCCCEE
Confidence 99999999999999999999999987 3467899999999999999999999999999999999999999999999999
Q ss_pred eeeecCceEEEeeEeecCCCCEEEEEEEEcCCC------CCCCCceEEEeccC--CceeEEEEcccccCCCCCCCCCCCC
Q psy17575 694 GLRYAGLVLEVDKVNTKCNGAITSIDVKATPVD------VDNKPKAFIHWVAR--PISIEVRLYSTLFLHKNPEDTYQVP 765 (832)
Q Consensus 694 ~L~~~~~~~~~~~~~~~~~g~v~e~~~~~~~~~------~~~k~k~~I~Wv~~--~~~~evr~y~~Lf~~~~p~~~~~~~ 765 (832)
+||+|+ +|+|+++++|.+|+|++|+|+|++.+ +.+|+|++|||||+ +++||||+|++||++++|++.
T Consensus 410 rL~~~~-~i~~~~~~kd~~g~v~~~~~~~~~~~~~g~~~~~~k~k~~ihWv~~~~~~~~~~~~yd~L~~~~~p~~~---- 484 (553)
T 1qtq_A 410 RLRNAY-VIKAERVEKDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNPGAA---- 484 (553)
T ss_dssp EETTSC-EEEEEEEECCSSSCCCEEEECCCSSCC-----------CEECCEESTTCEEEEEEEECCSBSSSCGGGS----
T ss_pred EeccEE-EEEEEEEEEcCCCCEEEEEEEEecccccCCCccccccCCEEEEeecCCCEeEEEEecccccCCCCCCcC----
Confidence 999995 56899999999999999999998863 46889999999996 489999999999999999632
Q ss_pred CCccccCCCCceeEEEEEeecCccCCCCCCeEEeEEeeeEEEec-CCCCCCccEEEeeeccccCCCC
Q psy17575 766 EGYLSDINPDSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDR-DSNINHKPVVNLTVSLKEDSGK 831 (832)
Q Consensus 766 ~~~~~~iN~~S~~~~~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~-~~~~~~~lv~n~~v~lk~~~~k 831 (832)
++|+++|||+|++++.+++|+++.++++|++|||||+||||||+ +|+++ ++||||||+||++|+|
T Consensus 485 ~~~~~~~np~s~~~~~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~-~~vfnr~v~l~~~~~~ 550 (553)
T 1qtq_A 485 DDFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAE-KPVFNRTVGLRDTWAK 550 (553)
T ss_dssp TTGGGGBCTTSEEEEEEEECGGGGGCCTTCEEEETTTEEEESCTTTCCSS-SCEEEEEEECCCC---
T ss_pred cchhhhcCCcchhheeeEecHhHhhCCCCCEEEEEEeeEEEECcCCCCCC-CeeEEeEEEcccchhh
Confidence 57999999999999999999999999999999999999999997 78888 9999999999999987
No 2
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=100.00 E-value=3.6e-136 Score=1210.14 Aligned_cols=519 Identities=40% Similarity=0.707 Sum_probs=481.1
Q ss_pred HHHHHHhhhhc-CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCC
Q psy17575 306 HDLLREHIKYT-GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYK 384 (832)
Q Consensus 306 ~~~~~~hl~~~-~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~ 384 (832)
.++++++|+.. .++||||||||||||||||||||||+||++||++||+|+||||||||+|+.++|+++|++||+|||+.
T Consensus 52 ~~ii~~dl~~g~~~~v~tRFaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~IledL~wLGl~ 131 (851)
T 2hz7_A 52 TEIIERDLEAGKYPRVVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYVDSIADDLKWLGLD 131 (851)
T ss_dssp HHHHHHHHHTTSCSSCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCTTTCCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhcCCcCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHHHHcCCC
Confidence 67888888863 34799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-cccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccC------CCCCCCCCCChhHhHHHHHHHHcCcccCCCce
Q psy17575 385 PY-QITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN------PLPSPWRERPVEENVKLFEAMKNGLIDEGEAT 457 (832)
Q Consensus 385 pd-~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~------~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~ 457 (832)
|+ .+++||+||++||++|++||++|+||+||||++||++++ +..|+||++++++++.+|++|.+|.+.+|+++
T Consensus 132 wde~~~~qSer~d~y~e~a~~LI~~G~AY~c~ct~eel~~~r~~~~~~G~~s~~R~ls~ee~l~~fe~m~~G~~~~g~~v 211 (851)
T 2hz7_A 132 WGEHFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLLRRMKAGEFADGEHV 211 (851)
T ss_dssp CTTCEEEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHHHHHHHHHHTTCSCTTSCE
T ss_pred CCCCcccHhhhHHHHHHHHHHHHHCCCcEeecCCHHHHHHHhcchhccCCCcccccCCHHHHhhHHHHHhcCCcccCCee
Confidence 96 789999999999999999999999999999999998652 34678999999999999999999999999999
Q ss_pred EEEEecccCC---CCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCC
Q psy17575 458 LRMKITLEEG---KQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC 534 (832)
Q Consensus 458 lR~K~~~~~~---~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~ 534 (832)
||+|+++.+. ..|+|+||+...+|+++|+.|++|||||||||||||+|||||||||.||.+|++.|.||+++||++.
T Consensus 212 lR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w~g~PtYhfA~vVDD~~~GITHViRG~D~~~n~~~q~~l~~alG~~~ 291 (851)
T 2hz7_A 212 LRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEWHIYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNFDP 291 (851)
T ss_dssp EEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHHTCSEEEEEGGGTTTHHHHHHHHHHTTCSS
T ss_pred EEEeccccccCCCCCCcEEEEecCCCCCccCCCCccccccceeeEeeeccCCcceeecchhhhhChHHHHHHHHHcCCCC
Confidence 9999998764 3799999999999999999999999999999999999999999999999999999999999999996
Q ss_pred -CCcccccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHH
Q psy17575 535 -PVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVV 613 (832)
Q Consensus 535 -P~~~ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~ 613 (832)
|.||+|+|||++|+|||||+++++|++|+|+||||||++||++||++||+|+||++||+.+||++.+..+++..|++++
T Consensus 292 ~P~~~~fahLn~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr~fl~~lG~s~~~~~~e~~~le~~~ 371 (851)
T 2hz7_A 292 RPHQYEFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDIAVYENAV 371 (851)
T ss_dssp CCEEEEECCEEETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHHHHHHHSCCCSSCEEECHHHHHHHH
T ss_pred CCCceEEEEecCCCccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHHHHHHHHhcCCCCCcccccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999989999999999
Q ss_pred HHhhccCCCceeEEecCcceEEeecCCCCceeEEeecCCCCC-------------------CCCceeEEeecceeEEeCC
Q psy17575 614 REVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPND-------------------ATKGSHDIQFDRTIYIEKS 674 (832)
Q Consensus 614 r~~l~~~a~R~~av~dp~kl~i~N~~~~~~~~~~~~p~~P~~-------------------~~~G~~~v~~~~~iyIe~~ 674 (832)
|+.|++.++|+|||+||+||.|+|+|+ +. ++++|+||++ |++|+|+|+|+++||||++
T Consensus 372 r~~l~~~~~r~~av~d~~Kl~~~N~~~-~~--~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~g~r~v~~~~~iyie~~ 448 (851)
T 2hz7_A 372 RDDLNHRAPRVMAVLDPVKVTLTNLDG-EK--TLSLPYWPHDVVRDSPDGLVGMPGGGRVAPEEAVRDVPLTRELYIERD 448 (851)
T ss_dssp HHHHHTTCCEECEESSEEEEEETTCCS-CE--EEEEESSCHHHHHTCTTSCEECSSSCEECGGGCEEEEEECSEEEEEGG
T ss_pred HhcccccccccceEecceeEEEecCCC-Ce--EEEecCCcccccccccccccccccccccCccCceEEEEEcCeEEEEHH
Confidence 999999999999999999999999987 54 8999999999 9999999999999999999
Q ss_pred ccccccccCccccCCCCeeeeeecCceEEEeeEeecCCCCEEEEEEEEcCCCCCCCCceEEEeccC--CceeEEEEcccc
Q psy17575 675 DFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSIDVKATPVDVDNKPKAFIHWVAR--PISIEVRLYSTL 752 (832)
Q Consensus 675 D~~~~~~~~~~rL~~~~~V~L~~~~~~~~~~~~~~~~~g~v~e~~~~~~~~~~~~k~k~~I~Wv~~--~~~~evr~y~~L 752 (832)
||++.++++||||+||++|+||+|++ |+|+++++|.+|+|++|+|+|. .+.+|+|++|||||. ++++|||+|++|
T Consensus 449 Df~e~~~~~~~rl~~g~~vrL~~~~~-i~~~~~~kd~~g~v~~~~~~~~--~~~~k~k~~ihWv~~~~~~~~e~r~yd~L 525 (851)
T 2hz7_A 449 DFSPAPPKGFKRLTPGGTVRLRGAGI-IRADDFGTDEAGQVTHIRATLL--GEDAKAAGVIHWVSAERALPAEFRLYDRL 525 (851)
T ss_dssp GBCSSCCTTCCSBCTTCEEEETTTEE-EEEEEEEECTTSCEEEEEEEEC--CTTCCCSCEECCEETTTCEEEEEEEECCS
T ss_pred HhhhcccccceecCCCCEEEecCeEE-EEEEEEEecCCCCEEEEEEEEc--ccCCccCceEEEeecCCCeeEEEEecccc
Confidence 99999999999999999999999965 5799999999999999999995 346789999999996 489999999999
Q ss_pred cCCCCCCCC------------------------CCCCCCccccCCCCceeEEEEEeecCccCCCCCCeEEeEEeeeEEEe
Q psy17575 753 FLHKNPEDT------------------------YQVPEGYLSDINPDSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVD 808 (832)
Q Consensus 753 f~~~~p~~~------------------------~~~~~~~~~~iN~~S~~~~~~~~e~~~~~~~~~~~~QfeR~Gyf~~D 808 (832)
|++++|++. ...+++|+++|||+|++++.+++|+++.++++|++|||||+||||||
T Consensus 526 f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~e~~~~~~~~~~~~QfeR~Gyf~~D 605 (851)
T 2hz7_A 526 FRVPHPEGENADVEDDSAGPAEHEAEPGAGQETAPVSQGFMRYLTPDSLRVLRGYVEPSVAGDPADTRYQFERQGYFWRD 605 (851)
T ss_dssp BSSSCTTCCC----------------------------CGGGGBCTTSEEEEEEEECGGGGGSCTTCEEEETTTEEEEEC
T ss_pred cCCCCcccccccccccccccccccccccccccccccCccHHHhcCCccceeeeeEEchhhhhCCCCCEEEEEEeeEEEEc
Confidence 999999641 01135799999999999999999999999999999999999999999
Q ss_pred c------CCCCCCccEEEeeeccccCCCC
Q psy17575 809 R------DSNINHKPVVNLTVSLKEDSGK 831 (832)
Q Consensus 809 ~------~~~~~~~lv~n~~v~lk~~~~k 831 (832)
+ ||+++ ++|||||||||++|+|
T Consensus 606 ~~~~~~~~~~~~-~~vfnr~v~lk~~~~~ 633 (851)
T 2hz7_A 606 PVELERVDSRED-ALVFGRIITLKDTWGK 633 (851)
T ss_dssp HHHHHCC-------CEEEEEECSSCCC--
T ss_pred cCCCccCCCCCC-ceEEEeecccccchhh
Confidence 7 88888 9999999999999987
No 3
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=5.4e-119 Score=1026.92 Aligned_cols=444 Identities=29% Similarity=0.446 Sum_probs=398.1
Q ss_pred hhhcCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCcccccc
Q psy17575 313 IKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSS 392 (832)
Q Consensus 313 l~~~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~~~~qS 392 (832)
|+.++|+|+|||||||||||||||||||++||++||++||+|+||||||||+|+.++|+++|++||+|||+.||++++||
T Consensus 90 L~~~~g~v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDtD~~R~~~e~~~~I~edL~wLGl~wd~~~~qS 169 (553)
T 3aii_A 90 LAGVKGEVVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADLEWLGVEWDETVIQS 169 (553)
T ss_dssp CSSCCSCCEEEECCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCTTHHHHHHHHHHHHTCCCSEEEEGG
T ss_pred CCCCCCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHHHHcCCCCCCCcccc
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHcCCccccCCCHHHHhccC--CCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCC---
Q psy17575 393 DYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN--PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG--- 467 (832)
Q Consensus 393 d~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~--~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~--- 467 (832)
+||+.||++|++||++|+||+|+||+++|++++ +.+|+||+++.+|++.+|++|++| .+|+++||+|+++.+.
T Consensus 170 dr~~~y~~~~~~Li~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G--~~g~~~lR~k~d~~~~n~~ 247 (553)
T 3aii_A 170 DRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEM--KEGSAVVRVKTDLNHPNPA 247 (553)
T ss_dssp GGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGS--CTTSCEEEECCCTTCSSGG
T ss_pred cCHHHHHHHHHHHHHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcC--CcCceEEEEEcccccCCCC
Confidence 999999999999999999999999999998653 567999999999999999999999 5678999999998764
Q ss_pred CCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccccCCCC
Q psy17575 468 KQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNY 547 (832)
Q Consensus 468 ~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~l~g 547 (832)
..|+|+||+...+||++||+||+|||||||||||||+|||||||||.||++|+++|.||+++||++.|.+|||++|+++|
T Consensus 248 ~~Dfvl~R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~l~~alG~~~P~y~H~~~L~~~g 327 (553)
T 3aii_A 248 IRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLGWEPPEFIHYGRLKMDD 327 (553)
T ss_dssp GTTCEEEEECCSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHHTCCCCEEECCCCBC---
T ss_pred CCCcEEEEecCCCCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHHHHHHcCCCCCeEEEeeEEecCC
Confidence 48999999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhhccCCCceeEE
Q psy17575 548 TVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVV 627 (832)
Q Consensus 548 tkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l~~~a~R~~av 627 (832)
+|||||+++++|++|.|+||||||++||++||++||+|+||++||+.+||++++..|+++.|+++||++||++|||+|||
T Consensus 328 ~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G~s~~~~~~s~~~L~~~~r~~l~~~a~R~~~V 407 (553)
T 3aii_A 328 VALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKKIYGLNRSILEEEARRYFFA 407 (553)
T ss_dssp ----CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTTCSSCBCCCHHHHHHHHHHHHTTTCEEECEE
T ss_pred ceechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcCCCCccccccHHHHHHHHHHHhhccChhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcceEEeecCCCCceeEEeecCCCCCCCCceeEEeecceeEEeCCccccccccCccccCCCCeeeeeecCceEEEeeE
Q psy17575 628 IDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKV 707 (832)
Q Consensus 628 ~dp~kl~i~N~~~~~~~~~~~~p~~P~~~~~G~~~v~~~~~iyIe~~D~~~~~~~~~~rL~~~~~V~L~~~~~~~~~~~~ 707 (832)
+||+||+|+|+|. ++++++|+||++|++|+|+|+|+++||||++||+ + ++|+||+|++| .|+++
T Consensus 408 ~~p~kv~i~n~~~---~~~~~~p~hp~~~~~G~r~v~~~~~i~ie~~D~~-----------~-~~vrL~~~~~i-~~~~~ 471 (553)
T 3aii_A 408 ADPVKLEVVGLPG---PVRVERPLHPDHPEIGNRVLELRGEVYLPGDDLG-----------E-GPLRLIDAVNV-IYSGG 471 (553)
T ss_dssp ESEEEEEEETCCS---CEEEEEESCTTCGGGCEEEEEESSEEEEECTTCC-----------S-EEEEETTTEEE-EEETT
T ss_pred cCcEEEEEeCCCC---ceEEEecCCCCCCcCccEEEEECCEEEEEcccCC-----------c-CceeecCEEEE-EEEEE
Confidence 9999999999983 2789999999999999999999999999999997 4 68999999875 34432
Q ss_pred eecCCCCEEEEEEEEcCCC--CCCCCc-eEEEeccCC--ceeEEEEcccccCCCCCCCCCCCCCCccccCCCCceeEEEE
Q psy17575 708 NTKCNGAITSIDVKATPVD--VDNKPK-AFIHWVARP--ISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSIG 782 (832)
Q Consensus 708 ~~~~~g~v~e~~~~~~~~~--~~~k~k-~~I~Wv~~~--~~~evr~y~~Lf~~~~p~~~~~~~~~~~~~iN~~S~~~~~~ 782 (832)
. |+|++.+ +.+|+| ++|||||++ ++++||. |+ + . ++.+
T Consensus 472 ~-----------~~~~~~~~~~~~k~k~~~i~Wv~~~~~~~~~~~~---------~~-------~---------~-~~~~ 514 (553)
T 3aii_A 472 E-----------LRYHSEGIEEARELGASMIHWVPAESALEAEVIM---------PD-------A---------S-RVRG 514 (553)
T ss_dssp E-----------EEEEECSHHHHHHHTCEEECCEEGGGCEEEEEEC---------TT-------S---------C-EEEE
T ss_pred E-----------EEEeCCchhhcccCCCCEEEEccCCCceEEEEEC---------CC-------C---------c-EEEE
Confidence 1 5665543 456777 799999975 6777772 31 1 1 5679
Q ss_pred EeecCccCCCCCCeEEeEEeeeEEEecCC
Q psy17575 783 YADSGFVGVKPYDRFQFERVGFFTVDRDS 811 (832)
Q Consensus 783 ~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~ 811 (832)
++|+++.++++|++|||||.||||||+++
T Consensus 515 ~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~ 543 (553)
T 3aii_A 515 VIEADASELEVDDVVQLERFGFARLDSAG 543 (553)
T ss_dssp EECGGGGGCCTTCEEEETTTEEEEEEECS
T ss_pred EEchhHhcCCCCCEEEEEEeEEEEEeeCC
Confidence 99999999999999999999999999874
No 4
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=100.00 E-value=6.6e-74 Score=657.31 Aligned_cols=293 Identities=25% Similarity=0.340 Sum_probs=256.5
Q ss_pred CceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCc---------c
Q psy17575 318 GKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ---------I 388 (832)
Q Consensus 318 ~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~---------~ 388 (832)
..||||||||||||||||||||||+||+|||++||+|+||||||||+|++++|+++|+++|+||||.||+ +
T Consensus 23 ~~vrtRFAPsPtG~LHiG~artAl~n~~~Ar~~~G~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl~wDe~p~~~g~~~p 102 (512)
T 4gri_A 23 LSTRVRYAPSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDTDQSRYSPEAENDLYSSLKWLGISFDEGPVVGGDYAP 102 (512)
T ss_dssp -CCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTCC
T ss_pred CceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCCHHHHHHHHHHHHHcCCCCCcCCccCCCCCC
Confidence 4699999999999999999999999999999999999999999999999999999999999999999985 4
Q ss_pred cccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccC----------CCCCCCCCCChhHhHHHHHHHHcCcccCCCceE
Q psy17575 389 THSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN----------PLPSPWRERPVEENVKLFEAMKNGLIDEGEATL 458 (832)
Q Consensus 389 ~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~----------~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~l 458 (832)
++||+|++.|+++|++|+++|+||+|+||++|+++.+ ...+.||+.+.++ +..+....+++++
T Consensus 103 y~QS~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~-------~~~~~~~~~~~~~ 175 (512)
T 4gri_A 103 YVQSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEE-------VENALIKKIKPVV 175 (512)
T ss_dssp CBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHH-------HHHHHHTTCCCEE
T ss_pred ccccchHHHHHHHHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhcccchhh-------hhhhhhhhcccee
Confidence 6999999999999999999999999999999997542 1245677766543 3333444567999
Q ss_pred EEEecccCC--CCCceEEEeeeCCCCCCCCceeE----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCC
Q psy17575 459 RMKITLEEG--KQDPVAYRIKFLPHHRTGDSWCI----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDI 532 (832)
Q Consensus 459 R~K~~~~~~--~~D~V~~Ri~~~~h~r~gd~~~i----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~ 532 (832)
|+|+++... +.|+|.||+.+.++...+|.+++ +|||||||||||++|||||||||+||++|||+|+||+++|||
T Consensus 176 R~k~~~~~~~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l~sTp~q~~l~~alg~ 255 (512)
T 4gri_A 176 RFKIPLEGDTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVLLYKAFKW 255 (512)
T ss_dssp EECCCSSCEEEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTC
T ss_pred eecccccCCceeeccccceEEecccccCCceEEEecCCcccccccceecccccCCceeccccccccccHHHHHHHHHcCC
Confidence 999998642 47999999999877666655554 999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccCC----CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC--cccCH
Q psy17575 533 YCPVQWEYGRLNV----NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ--AVVSP 606 (832)
Q Consensus 533 ~~P~~~ef~hL~l----~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~--~~~~~ 606 (832)
..| .|+|+|+ +|+|||||+++ .+|..+|+.||.|+||.||++.||||..+ +.|+.
T Consensus 256 ~~P---~y~H~pli~~~~g~kLSKR~~~----------------~~v~~~~~~G~lPeAl~NyLalLGws~~~~~Eifs~ 316 (512)
T 4gri_A 256 KPP---IYCHLPMVMGNDGQKLSKRHGS----------------TALRQFIEDGYLPEAIINYVTLLGWSYDDKREFFSK 316 (512)
T ss_dssp CCC---EEEEECCCBCTTSSBCCTTTSC----------------CBHHHHHHHTCCHHHHHHHHHHSSBCSSSSCCCCCH
T ss_pred CCC---eEEecchhccccccccCccccc----------------ccHHHHHHcCCChHHHHHHHHHhCCCCcccchhhhH
Confidence 999 6999987 48999999853 26999999999999999999999999764 57886
Q ss_pred -HHHHHHHHHhhccCCCceeEEecCcceEEeecCC
Q psy17575 607 -NMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQ 640 (832)
Q Consensus 607 -~~le~~~r~~l~~~a~R~~av~dp~kl~i~N~~~ 640 (832)
++++.|..+.+++++ +++|+.||.|.|...
T Consensus 317 ~eli~~Fdl~~v~ks~----a~fD~~KL~~~N~~~ 347 (512)
T 4gri_A 317 NDLEQFFSIEKINKSP----AIFDYHKLDFFNSYY 347 (512)
T ss_dssp HHHHHHCCGGGBCSSC----CBCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCC----ccccHHHHHHHHHHH
Confidence 566778888887777 789999999999654
No 5
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=100.00 E-value=9.5e-72 Score=634.99 Aligned_cols=291 Identities=22% Similarity=0.337 Sum_probs=258.3
Q ss_pred CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCc---------
Q psy17575 317 GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ--------- 387 (832)
Q Consensus 317 ~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~--------- 387 (832)
+++|||||||||||+|||||+||||+||++||++||+|+|||||||++|+.++|+++|+++|+||||.||+
T Consensus 4 ~~~vr~RFAPsPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl~wDegp~~gG~~~ 83 (498)
T 2ja2_A 4 TETVRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALRWLGLDWDEGPEVGGPYG 83 (498)
T ss_dssp CCCCEEEECCCSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTC
T ss_pred CCCeeEEECcCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCcccChHHHHHHHHHHHHcCCCcCCCcCcCCCCC
Confidence 56799999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccC---------CCCCCCCCCChhHhHHHHHHHHcCcccCC-Cce
Q psy17575 388 ITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN---------PLPSPWRERPVEENVKLFEAMKNGLIDEG-EAT 457 (832)
Q Consensus 388 ~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~---------~~~~~~R~r~~ee~L~~f~~m~~g~~~~g-~~~ 457 (832)
+++||+|++.|+++|++|+++|+||+|+||++||++.+ .++++||+++.+|+.+. ..+| .++
T Consensus 84 ~~~QS~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~--------~~~g~~~~ 155 (498)
T 2ja2_A 84 PYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAY--------LAEGRQPV 155 (498)
T ss_dssp CCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHH--------HHTTCCCE
T ss_pred CeeeecCHHHHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhh--------hccCCCce
Confidence 89999999999999999999999999999999997542 25688999999887542 2344 479
Q ss_pred EEEEecccC-CCCCceEEEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhc-
Q psy17575 458 LRMKITLEE-GKQDPVAYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNAL- 530 (832)
Q Consensus 458 lR~K~~~~~-~~~D~V~~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL- 530 (832)
||||+|... .+.|.|.|++.+.++. .+||+| +|||||||||||++|||||||||.||++++++|.||+++|
T Consensus 156 iR~k~~~~~~~~~D~v~G~i~~~~~~--~~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~ 233 (498)
T 2ja2_A 156 VRLRMPDDDLAWNDLVRGPVTFAAGS--VPDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALI 233 (498)
T ss_dssp EEECCCSSCEEEEETTTEEEEECTTC--SCCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHH
T ss_pred EEEECCCCceEEEecccceEeecccc--cCcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHH
Confidence 999998211 2479999999988763 468986 9999999999999999999999999999999999999999
Q ss_pred ----CCCCCCcccccccCC----CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC-
Q psy17575 531 ----DIYCPVQWEYGRLNV----NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ- 601 (832)
Q Consensus 531 ----~~~~P~~~ef~hL~l----~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~- 601 (832)
|+..| +|+|+|+ +|+|||||+++ .+|.+||++||+|+||+|||+.|||+..+
T Consensus 234 ~~g~g~~~P---~~~h~plil~~~g~KLSKR~g~----------------~~l~~~r~~G~~peAl~~~l~~lG~s~~~~ 294 (498)
T 2ja2_A 234 RIGVAERIP---KFAHLPTVLGEGTKKLSKRDPQ----------------SNLFAHRDRGFIPEGLLNYLALLGWSIADD 294 (498)
T ss_dssp HTTSCCCCC---EEEEECCEECSSSSBCCTTSGG----------------GBHHHHHHHTCCHHHHHHHHHTSSCCSCSS
T ss_pred hhcCCCCCC---eEEEeeeeECCCCCcccccCCc----------------ccHHHHHhCCCCHHHHHHHHHHhCCCCCcc
Confidence 99988 7999765 68999999964 27999999999999999999999999754
Q ss_pred -cccCH-HHHHHHHHHhhccCCCceeEEecCcceEEeecCC
Q psy17575 602 -AVVSP-NMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQ 640 (832)
Q Consensus 602 -~~~~~-~~le~~~r~~l~~~a~R~~av~dp~kl~i~N~~~ 640 (832)
+.+++ ++++.|..+.+++.+ +++||.||.|.|...
T Consensus 295 ~e~~s~~eli~~f~~~~~~~~~----a~fd~~kL~~~N~~~ 331 (498)
T 2ja2_A 295 HDLFGLDEMVAAFDVADVNSSP----ARFDQKKADALNAEH 331 (498)
T ss_dssp CCCCCHHHHHHHCCGGGCCCSC----EECCHHHHHHHHHHH
T ss_pred cccCCHHHHHhhCChhhcCccc----cccCHHHHHHhhHHH
Confidence 56675 667788877777666 999999999999654
No 6
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=100.00 E-value=1.3e-71 Score=630.83 Aligned_cols=290 Identities=22% Similarity=0.322 Sum_probs=256.0
Q ss_pred ceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCcc---------c
Q psy17575 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQI---------T 389 (832)
Q Consensus 319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~~---------~ 389 (832)
+|||||||||||+|||||+||||+||++||++||+|+|||||||++|+.++|+++|+++|+|||+.||+. +
T Consensus 1 ~v~~RFaPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~ 80 (468)
T 1j09_A 1 MVVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPY 80 (468)
T ss_dssp CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCC
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCcccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCe
Confidence 4899999999999999999999999999999999999999999999999999999999999999999964 8
Q ss_pred ccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccC----CCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEeccc
Q psy17575 390 HSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN----PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLE 465 (832)
Q Consensus 390 ~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~----~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~ 465 (832)
+||+|++.|+++|++|+++|+||+|+||++|+++.+ .++++||+++.+|++. .|.+|+ +++||||+|..
T Consensus 81 ~QS~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~---~~~~g~----~~~~R~k~~~~ 153 (468)
T 1j09_A 81 RQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEE---RARRGE----PHVIRLKVPRP 153 (468)
T ss_dssp BGGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHH---HHHTTC----CCEEEECCCSS
T ss_pred eccCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHH---HHhcCC----CceEEEecCCC
Confidence 999999999999999999999999999999998643 5788999999988754 355443 58999999864
Q ss_pred C--CCCCceEEEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcc
Q psy17575 466 E--GKQDPVAYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQW 538 (832)
Q Consensus 466 ~--~~~D~V~~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ 538 (832)
. .+.|.|.|++.+.+. ..+||+| +|||||||||||++|||||||||.||++++++|.||+++||+..|
T Consensus 154 ~~~~~~D~~~G~~~~~~~--~~~D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~p--- 228 (468)
T 1j09_A 154 GTTEVKDELRGVVVYDNQ--EIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAP--- 228 (468)
T ss_dssp CEEEEEETTTEEEEEEGG--GSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCC---
T ss_pred CceEEEeccceeEeeccc--CCCCeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcCCCCC---
Confidence 2 246888888776543 2356776 999999999999999999999999999999999999999999988
Q ss_pred cccccCC----CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC--cccCH-HHHHH
Q psy17575 539 EYGRLNV----NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ--AVVSP-NMLEA 611 (832)
Q Consensus 539 ef~hL~l----~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~--~~~~~-~~le~ 611 (832)
+|+|+|+ +|+|||||+++ .+|.++|++||+|+||+|||+.+||+..+ ..+++ ++++.
T Consensus 229 ~~~h~~li~~~~g~klSKR~g~----------------~~l~~~~~~G~~peal~~~l~~lG~~~~~~~~~~~~~el~~~ 292 (468)
T 1j09_A 229 RFYHMPLLRNPDKTKISKRKSH----------------TSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFIQA 292 (468)
T ss_dssp EEEEECCCBCTTSCBCCTTTSC----------------CBHHHHHHTTCCHHHHHHHHHHHSCCCTTCCSCCCHHHHHHH
T ss_pred eEEEeeeeeCCCCCccccccch----------------hhHHHHHHCCCCHHHHHHHHHHhccCCcccccCCCHHHHHhh
Confidence 6899765 68999999964 26999999999999999999999999754 56776 67788
Q ss_pred HHHHhhccCCCceeEEecCcceEEeecCC
Q psy17575 612 VVREVLNDTAPRVMVVIDPLPLHIVNFDQ 640 (832)
Q Consensus 612 ~~r~~l~~~a~R~~av~dp~kl~i~N~~~ 640 (832)
|..+.+++.+ +++||.||.|.|..+
T Consensus 293 f~~~~~~~~~----~~~d~~kl~~~N~~~ 317 (468)
T 1j09_A 293 FTWERVSLGG----PVFDLEKLRWMNGKY 317 (468)
T ss_dssp CCGGGCCCSC----CBCCHHHHHHHHHHH
T ss_pred CChhhcCccc----cccChHHhhhhcHHH
Confidence 8888777655 899999999999765
No 7
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=100.00 E-value=2.2e-70 Score=621.34 Aligned_cols=290 Identities=23% Similarity=0.364 Sum_probs=245.0
Q ss_pred CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCc-ccccchhH
Q psy17575 317 GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ-ITHSSDYF 395 (832)
Q Consensus 317 ~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~-~~~qSd~~ 395 (832)
.++|||||||||||+|||||+||||+||++||++||+|+|||||||++|+.++|++.|+++|+|||+.||+ +++||+|+
T Consensus 23 ~~~v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dl~wlGl~~d~~~~~qS~r~ 102 (490)
T 4g6z_A 23 TRPVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEGMAWLGLDYDEGPYYQMQRM 102 (490)
T ss_dssp -CCCEEEECCCCCSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCCCSEEEEEGGGCH
T ss_pred CCCceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEeCCCCcccccHHHHHHHHHHHHHcCCCCCCCCcccccCH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999996 69999999
Q ss_pred HHHHHHHHHHHHcCCccccCCCHHHHhccC----------CCCCCCCCCChhHhHHHHHHHHcCcccCC-CceEEEEecc
Q psy17575 396 HQLYEWAVKLIKKGLAYVCHQKSDEMKGFN----------PLPSPWRERPVEENVKLFEAMKNGLIDEG-EATLRMKITL 464 (832)
Q Consensus 396 ~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~----------~~~~~~R~r~~ee~L~~f~~m~~g~~~~g-~~~lR~K~~~ 464 (832)
+.|++++++|+++|+||+||||++||++.+ .++++||+++.++ .....+| ++++|||++.
T Consensus 103 ~~y~~~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~---------~~~~~~g~~~~~R~k~~~ 173 (490)
T 4g6z_A 103 DRYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKV---------LPEPPAGVAPVLRFRNPL 173 (490)
T ss_dssp HHHHHHHHHHHHTTSEEEECC-------------------CCCCTTCCCTTCC---------CCCCCTTCCCEEEECCCC
T ss_pred HHHHHHHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhh---------hhhhhcCCCceEEEecCC
Confidence 999999999999999999999999998643 1467899887432 1122344 4899999974
Q ss_pred cC--CCCCceEEEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCc
Q psy17575 465 EE--GKQDPVAYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQ 537 (832)
Q Consensus 465 ~~--~~~D~V~~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~ 537 (832)
.. .+.|.|.+.+.+.+. ..+||+| +|||||||||||++|||||||||+||+++||+|+||+++|||..|
T Consensus 174 ~~~~~~~D~i~G~~~~~~~--~~~D~Vl~R~DG~ptY~lA~vVDD~~mgIThViRG~D~l~~tprq~~l~~aLG~~~P-- 249 (490)
T 4g6z_A 174 TGTVAWDDAVKGRVEISNE--ELDDLVVARPDGTPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILRALGGEVP-- 249 (490)
T ss_dssp SSEEEEEETTTEEEEEEGG--GCCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHTTCCCC--
T ss_pred CCcEEEEEeeeeeeeeccc--cCCCeEEEeeCCCccchhHHHHHHHhcCCCEEEeccccccChHHHHHHHHHcCCCCC--
Confidence 32 235677777665432 3356665 999999999999999999999999999999999999999999999
Q ss_pred ccccccCC----CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC-cccCH-HHHHH
Q psy17575 538 WEYGRLNV----NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ-AVVSP-NMLEA 611 (832)
Q Consensus 538 ~ef~hL~l----~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~-~~~~~-~~le~ 611 (832)
.|+|+|+ +|+|||||+++ .||.+||++||+|+||+|||+.|||+..+ +.++. +++++
T Consensus 250 -~f~HlpLi~~~~g~KLSKR~g~----------------~sl~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~~eli~~ 312 (490)
T 4g6z_A 250 -VYAHLPTVLNEQGEKMSKRHGA----------------MSVMGYRDAGYLPEAVLNYLARLGWSHGDAEIFTREQFVEW 312 (490)
T ss_dssp -EEEEECCEECTTSSBCCTTTTC----------------CBHHHHHHTTCCHHHHHHHHHTSSBCCTTCCCCCHHHHHHH
T ss_pred -eEEEecceeCCCCCcccCCCCC----------------cCHHHHHHCCCCHHHHHHHHHHhCCCCCCccccCHHHHHhh
Confidence 6999987 68999999842 38999999999999999999999999765 46676 78899
Q ss_pred HHHHhhccCCCceeEEecCcceEEeecCC
Q psy17575 612 VVREVLNDTAPRVMVVIDPLPLHIVNFDQ 640 (832)
Q Consensus 612 ~~r~~l~~~a~R~~av~dp~kl~i~N~~~ 640 (832)
|+.+.|++++ +++|+.||.|.|...
T Consensus 313 F~~~~~~~~~----~~fd~~KL~~~N~~~ 337 (490)
T 4g6z_A 313 FDLEHLGKSP----AQYDHNKLNWLNNHY 337 (490)
T ss_dssp CCGGGBCSSC----EECCHHHHHHHHHHH
T ss_pred CCHhhCCCCC----CccCHHHHHHHHHHH
Confidence 9999988888 789999999999664
No 8
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=100.00 E-value=8.5e-69 Score=611.13 Aligned_cols=285 Identities=24% Similarity=0.311 Sum_probs=245.3
Q ss_pred ceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCc-ccccchhHHH
Q psy17575 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ-ITHSSDYFHQ 397 (832)
Q Consensus 319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~-~~~qSd~~~~ 397 (832)
+|||||||||||+|||||+||||+||++||++||+|+|||||||++|+.++|+++|+++|+|||+.||+ +++||+|++.
T Consensus 1 ~v~~RFAPSPtG~lHiG~artal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dL~wLGl~wde~~~~QS~r~~~ 80 (492)
T 2cfo_A 1 TVRVRLAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQWLGLTWDEGPYFQSDRLDL 80 (492)
T ss_dssp CCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCSSSSCCHHHHHHHHHHHHHTTCCCSEEEEEGGGCHHH
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEeeCCccccchHHHHHHHHHHHHcCCCCCCCCccccCCHHH
Confidence 489999999999999999999999999999999999999999999999999999999999999999996 8999999999
Q ss_pred HHHHHHHHHHcCCccccCCCHHHHhccC----------CCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccC-
Q psy17575 398 LYEWAVKLIKKGLAYVCHQKSDEMKGFN----------PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEE- 466 (832)
Q Consensus 398 ~ye~A~~Li~~G~AY~C~Cs~eel~~~~----------~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~- 466 (832)
|++++++|+++|+||+||||++||++.+ .++++||+++.+|++ ++|.+|. ++++|+|++...
T Consensus 81 y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~---~~~~~g~----~~~iR~k~~~~~~ 153 (492)
T 2cfo_A 81 YRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQA---AFEAAGR----TPVIRFKIEDDRQ 153 (492)
T ss_dssp HHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHH---HHHHTTC----CCEEEECCCTTCE
T ss_pred HHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHH---HHHhCCC----CceEEEEcCCCCc
Confidence 9999999999999999999999997632 256789999988765 3555553 589999997521
Q ss_pred ----------------CC-CCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHh
Q psy17575 467 ----------------GK-QDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNA 529 (832)
Q Consensus 467 ----------------~~-~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~a 529 (832)
.. .|+|++|... +| |+++||||||||||||+|||||||||+||++|+++|.||+++
T Consensus 154 ~~~~D~v~G~~~~~~~~~~~D~Vl~R~d~--~p-----~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~a 226 (492)
T 2cfo_A 154 IEWQDLVRGRVSWQGADLGGDMVIARAAP--RG-----EIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEA 226 (492)
T ss_dssp EEEEETTTEEEEEEGGGGCSSEEEECSCC--TT-----SCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHH
T ss_pred eEEEecceeeeeecccccCCCeEEEEecC--CC-----CCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHH
Confidence 13 5777776422 11 335999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccccccCC----CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCC--C-Cc
Q psy17575 530 LDIYCPVQWEYGRLNV----NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTG--A-QA 602 (832)
Q Consensus 530 L~~~~P~~~ef~hL~l----~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~--~-~~ 602 (832)
||+..| .|+|+|+ +|+|||||+++ .+|.+||++||+|+||+|||+.+||+. . .+
T Consensus 227 lg~~~P---~~~H~plil~~~g~KLSKr~g~----------------~~l~~~r~~G~~peal~~~l~~lG~s~~~~~~e 287 (492)
T 2cfo_A 227 LGATPP---NFAHTPLILNSTGQKLSKRDGV----------------TSISDFRAMGYLAPALANYMTLLGWSPPEGVGE 287 (492)
T ss_dssp TTCCCC---EEEEECCEECSSSSBCCTTSSC----------------CBHHHHHHTTCCHHHHHHHHHHTTBCCCTTTCS
T ss_pred cCCCCc---eEEEeeeEECCCCCEecccCCc----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCCCcccc
Confidence 999998 6899665 69999999953 269999999999999999999999996 2 35
Q ss_pred ccCH-HHHHHHHHHhhccCCCceeEEecCcceEEeecCC
Q psy17575 603 VVSP-NMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQ 640 (832)
Q Consensus 603 ~~~~-~~le~~~r~~l~~~a~R~~av~dp~kl~i~N~~~ 640 (832)
.++. ++++.|..+.++ +.++++||.||.|.|...
T Consensus 288 ~~~~~e~i~~f~~~~i~----~~~~~~d~~kl~~~N~~~ 322 (492)
T 2cfo_A 288 LFTLDLAAKHFSFERIN----KAGARFDWDKLNWLNRQY 322 (492)
T ss_dssp CCCHHHHHHHCCSTTBC----SSCEECCHHHHHHHHHHH
T ss_pred ccCHHHHHhhcChhhcC----ccccccCHHHHHHHHHHH
Confidence 6675 555666666554 455999999999999654
No 9
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=100.00 E-value=1.8e-68 Score=607.50 Aligned_cols=285 Identities=22% Similarity=0.318 Sum_probs=241.9
Q ss_pred cCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCc--------
Q psy17575 316 TGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ-------- 387 (832)
Q Consensus 316 ~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~-------- 387 (832)
+.++|||||||||||+|||||+||||+||++||++||+|+|||||||++|+.+++++.|+++|+|||+.||+
T Consensus 22 ~~~~v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dL~wlGl~wDe~~~~gG~~ 101 (488)
T 3afh_A 22 CFELVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDF 101 (488)
T ss_dssp ---CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHTTCCCSBBTTTBCTT
T ss_pred cCCCceEEECCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeCCcccccHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 345699999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -ccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccC
Q psy17575 388 -ITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEE 466 (832)
Q Consensus 388 -~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~ 466 (832)
+++||+|++.|++++++|+++|+||+|+||++||++...+.++.+ . +.+.+|+ ++++|||++ ..
T Consensus 102 gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~----~------~~~~~G~----~~~iR~k~~-~~ 166 (488)
T 3afh_A 102 GPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYP----H------EYKEKGH----PVTIKFKVL-PG 166 (488)
T ss_dssp CCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCC----H------HHHHTTC----CEEEEECCC-SS
T ss_pred CCeeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCch----h------hHHhcCC----CceEEEECC-CC
Confidence 489999999999999999999999999999999987522212222 1 2233332 579999998 32
Q ss_pred --CCCCceEEEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCccc
Q psy17575 467 --GKQDPVAYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWE 539 (832)
Q Consensus 467 --~~~D~V~~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~e 539 (832)
.+.|.|.|++.+.++ ..+||+| +|||||||||||++|||||||||.||++++|+|.||+++||+..| +
T Consensus 167 ~~~~~D~v~G~~~~~~~--~~~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG~~~P---~ 241 (488)
T 3afh_A 167 KTSFEDLLKGYMEFDNS--TLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAP---V 241 (488)
T ss_dssp EEEEEETTTEEEEEEGG--GSCCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCCCC---E
T ss_pred ceeEEeccceeEeecCC--CCCCeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcCCCCC---e
Confidence 247999999987664 3467886 999999999999999999999999999999999999999999999 6
Q ss_pred ccccCC----CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC-cccCHH-HHHHHH
Q psy17575 540 YGRLNV----NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ-AVVSPN-MLEAVV 613 (832)
Q Consensus 540 f~hL~l----~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~-~~~~~~-~le~~~ 613 (832)
|+|+|+ +|+|||||+++ .+|.++|++||+|+||+|||+.+||+..+ +.++++ +++.|+
T Consensus 242 f~H~pli~~~~g~KLSKR~g~----------------~~l~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~~e~i~~f~ 305 (488)
T 3afh_A 242 FMHIPLILGSDRTPLSKRHGA----------------TSVEHFRREGILSRALMNYLALLGWRVEGDEIFTIEEKLQSFD 305 (488)
T ss_dssp EEEECCEECTTSSBCCTTTSC----------------CBHHHHHHHTCCHHHHHHHHHHTTCCCSSCSCCCHHHHGGGCC
T ss_pred EEEEeeeeCCCCCcccCcCCc----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCcccccCCHHHHHhhCC
Confidence 999865 68999999953 26999999999999999999999999755 556653 344454
Q ss_pred HHhhccCCCceeEEecCcceEEeecCC
Q psy17575 614 REVLNDTAPRVMVVIDPLPLHIVNFDQ 640 (832)
Q Consensus 614 r~~l~~~a~R~~av~dp~kl~i~N~~~ 640 (832)
.+. .+|.++++||.||.|.|..+
T Consensus 306 ~~~----i~~~~~~fd~~kl~~~N~~~ 328 (488)
T 3afh_A 306 PKD----ISNKGVIFDYQKLEWVNGKH 328 (488)
T ss_dssp GGG----SCSSCEECCHHHHHHHHHHH
T ss_pred hhh----cCccccccChHHhhhccHHH
Confidence 444 45667999999999999654
No 10
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-65 Score=596.23 Aligned_cols=284 Identities=22% Similarity=0.329 Sum_probs=243.8
Q ss_pred CceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCc---------c
Q psy17575 318 GKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ---------I 388 (832)
Q Consensus 318 ~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~---------~ 388 (832)
++|+|||||||||+|||||+|+||+||++||++||+|+|||||||++|+.+++++.|+++|+|||+.||+ +
T Consensus 128 ~~v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~I~~dL~wlGl~~D~~~~~gG~~gp 207 (592)
T 3al0_C 128 ELVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGP 207 (592)
T ss_dssp CCCEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCSSSCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTCC
T ss_pred CeEEEEECCCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecCcChhhccHHHHHHHHHHHHHcCCCCCCCCCcCCCCCC
Confidence 4699999999999999999999999999999999999999999999999999999999999999999997 4
Q ss_pred cccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccC-C
Q psy17575 389 THSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEE-G 467 (832)
Q Consensus 389 ~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~-~ 467 (832)
++||+|++.|++++.+|+++|+||+|+||++||++...+. |..+ . +.+..|+ ++++|||++... .
T Consensus 208 ~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~--Y~~~--~------~~~~~g~----~~~iR~k~~~~~~~ 273 (592)
T 3al0_C 208 YRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTT--YEYP--H------EYKEKGH----PVTIKFKVLPGKTS 273 (592)
T ss_dssp CBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCC--SSCC--H------HHHHTTC----CEEEEECCCSSCCE
T ss_pred eeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCC--CCcH--H------HHhhcCC----CceEEEECCCCCce
Confidence 8999999999999999999999999999999999863322 2222 1 2233332 579999998211 2
Q ss_pred CCCceEEEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccc
Q psy17575 468 KQDPVAYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGR 542 (832)
Q Consensus 468 ~~D~V~~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~h 542 (832)
+.|.|.|++.+.++ +.+||+| +|||||||||||++|||||||||.||++++++|.||+++||++.| +|+|
T Consensus 274 ~~D~v~G~~~~~~~--~~~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~P---~~~h 348 (592)
T 3al0_C 274 FEDLLKGYMEFDNS--TLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAP---VFMH 348 (592)
T ss_dssp ECCTTTCSEECCSS--SSCCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTTCCCC---BCCE
T ss_pred eeecccceeeeccc--cCCCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhCCCCC---eEEE
Confidence 47999999887654 3468888 999999999999999999999999999999999999999999999 6999
Q ss_pred cCC----CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC-cccCH-HHHHHHHHHh
Q psy17575 543 LNV----NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ-AVVSP-NMLEAVVREV 616 (832)
Q Consensus 543 L~l----~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~-~~~~~-~~le~~~r~~ 616 (832)
+|+ +|+|||||+++ .+|.+||++||+|+||+|||+.+||+..+ ..+++ +++++|+.+.
T Consensus 349 lpli~~~~g~KLSKR~g~----------------~~l~~~~~~G~~peal~~~l~~lG~s~~~~e~~s~~e~i~~f~~~~ 412 (592)
T 3al0_C 349 IPLILGSDRTPLSKRHGA----------------TSVEHFRREGILSRALMNYLALLGWRVEGDEIFTIEEKLQSFDPKD 412 (592)
T ss_dssp ECCCBCTTSSBCCTTTCS----------------SBHHHHHHTTCCHHHHHHHHTTTTBCCCSCSCCCTTTTGGGCCTTS
T ss_pred eeeeeCCCCCcccccCCc----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCcccccCCHHHHHhhCChhh
Confidence 865 68999999953 26999999999999999999999999754 45554 3456666555
Q ss_pred hccCCCceeEEecCcceEEeecCC
Q psy17575 617 LNDTAPRVMVVIDPLPLHIVNFDQ 640 (832)
Q Consensus 617 l~~~a~R~~av~dp~kl~i~N~~~ 640 (832)
+ +|.++++||.||.|.|..+
T Consensus 413 i----~~~~~~fd~~kl~~~N~~~ 432 (592)
T 3al0_C 413 I----SNKGVIFDYQKLEWVNGKH 432 (592)
T ss_dssp B----CSSCCBCCHHHHHHHHHHH
T ss_pred c----CcccceeCHHHHhhhhHHH
Confidence 5 4556999999999999654
No 11
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=100.00 E-value=7.7e-63 Score=561.34 Aligned_cols=291 Identities=24% Similarity=0.357 Sum_probs=247.0
Q ss_pred ceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCc---------cc
Q psy17575 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ---------IT 389 (832)
Q Consensus 319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~---------~~ 389 (832)
-||+||||||||+|||||+|+|++||++||.+||+|+|||||||++|+.++++++|+++|+|||+.||+ ++
T Consensus 13 vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~~~G~~iLRieDtD~~r~~~~~~~~I~~~l~wlGl~~de~p~~gg~~g~y 92 (481)
T 2o5r_A 13 MVRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLMESLRWLGLLWDEGPDVGGDHGPY 92 (481)
T ss_dssp CCEEEECCCCCSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCSSCCSGGGHHHHHHHHHHHHHTCCCSBBTTTBCTTCCC
T ss_pred EEEEEECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCccccHHHHHHHHHHHHHHcCCCCCCCcccCCCCCce
Confidence 489999999999999999999999999999999999999999999999999999999999999999996 48
Q ss_pred ccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccC----------CCCCC--CCCCChhHhHHHHHHHHcCcccCCCce
Q psy17575 390 HSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN----------PLPSP--WRERPVEENVKLFEAMKNGLIDEGEAT 457 (832)
Q Consensus 390 ~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~----------~~~~~--~R~r~~ee~L~~f~~m~~g~~~~g~~~ 457 (832)
+||+|++.|+++|++|+++|+||+|+||+++++..+ .+++. ||+++.+|+.+ .|.+|. +++
T Consensus 93 ~QS~r~~~y~~~a~~L~~~G~aY~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l~~~e~~~---~~~~G~----~~~ 165 (481)
T 2o5r_A 93 RQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRRE---YEEKGL----RPA 165 (481)
T ss_dssp BGGGGHHHHHHHHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHHHHHH---HHHTTC----CCE
T ss_pred eeeccHHHHHHHHHHHHHCCCeeEecCCHHHHHHHHHHHHhcCCCCCCCCchhhhcCCHHHHHH---HHhcCC----cce
Confidence 999999999999999999999999999999987532 23445 99999887653 455553 589
Q ss_pred EEEEecccC-CCCCceEEEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcC
Q psy17575 458 LRMKITLEE-GKQDPVAYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALD 531 (832)
Q Consensus 458 lR~K~~~~~-~~~D~V~~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~ 531 (832)
||+|++... .+.|.+.|++.+.+. .-+||+| +|||||||||||++|||||||||.||.+++++|.||+++||
T Consensus 166 iR~k~~~~~~~~~D~~~G~~~~~~~--~~~D~Vl~RsDG~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~aLG 243 (481)
T 2o5r_A 166 VFFKMPRKDYVLNDVVKGEVVFKTG--AIGDFVIMRSNGLPTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLALYEAFE 243 (481)
T ss_dssp EEECCCSSCEEEEETTTEEEEECTT--SSCBEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHHHTT
T ss_pred EEEEcCCCceEEEecccceeEeccc--cCCCeEEEccCCCcchhhHHHHHHHhCCCCeEEEChhHHHhHHHHHHHHHHcC
Confidence 999998621 235777777776543 3357776 99999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccCC----CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCC--CcccC
Q psy17575 532 IYCPVQWEYGRLNV----NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGA--QAVVS 605 (832)
Q Consensus 532 ~~~P~~~ef~hL~l----~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~--~~~~~ 605 (832)
+..| .|+|+|+ +|+|||||+++ .+|..+|++||+|+||+||++.+||+.. ...++
T Consensus 244 ~~~p---~~~H~plil~~~G~KLSKR~g~----------------~~l~~~~~~G~~peal~~~l~~lG~s~~~~~e~~~ 304 (481)
T 2o5r_A 244 KAPP---VFAHVSTILGPDGKKLSKRHGA----------------TSVEAFRDMGYLPEALVNYLALLGWSHPEGKELLT 304 (481)
T ss_dssp CCCC---EEEEECCEECTTSSBCCGGGSC----------------CBHHHHHHHTCCHHHHHHHHHTSSBCCTTCCCCCC
T ss_pred CCCC---eEEEEeeEECCCCCcccCcCCc----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCCcccccCC
Confidence 9988 5999764 68999999963 2699999999999999999999999973 34556
Q ss_pred HHHHHHHHHHhhccCCCceeEEecCcceEEeecCC
Q psy17575 606 PNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQ 640 (832)
Q Consensus 606 ~~~le~~~r~~l~~~a~R~~av~dp~kl~i~N~~~ 640 (832)
+ +.+++.+.-...++..+++||.|+.+.|...
T Consensus 305 ~---~e~i~~f~l~~~~~~~~~fd~~kl~~~n~~~ 336 (481)
T 2o5r_A 305 L---EELISSFSLDRLSPNPAIFDPQKLKWMNGYY 336 (481)
T ss_dssp H---HHHHHHCCGGGBCSSCEECCHHHHHHHHHHH
T ss_pred H---HHHHHhCChhhCCccCcccChHHhhhhCHHH
Confidence 5 2334444444455666999999999999653
No 12
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=100.00 E-value=3.7e-60 Score=510.08 Aligned_cols=259 Identities=19% Similarity=0.201 Sum_probs=199.1
Q ss_pred CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCc-ccccchhH
Q psy17575 317 GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ-ITHSSDYF 395 (832)
Q Consensus 317 ~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~-~~~qSd~~ 395 (832)
.++|||||||||||+|||||+|+||+||++||++||+|+|||||||++|+.++|++.|++||+|||+.||+ +++||+|+
T Consensus 3 ~~~v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~g~~ilRieDtD~~R~~~~~~~~I~~dL~~LGl~~D~~~~~qSer~ 82 (298)
T 1nzj_A 3 DTQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDGDVLWQSQRH 82 (298)
T ss_dssp -CCCEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCSCGGGSCTTHHHHHHHHHHHTTCCCSSCCEEGGGCH
T ss_pred CCCeEEEECcCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEecCCchhhHHHHHHHHHHHHHHcCCCCCCCCeeeeCCH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999996 89999999
Q ss_pred HHHHHHHHHHHHcCCccccCCCHHHHhccC-CCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccC-CCCCceE
Q psy17575 396 HQLYEWAVKLIKKGLAYVCHQKSDEMKGFN-PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEE-GKQDPVA 473 (832)
Q Consensus 396 ~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~-~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~-~~~D~V~ 473 (832)
+.|++++++|+++|+||+|+||++||++.. .+++.||+++.+ | ..+++|+|++... .+.|.+.
T Consensus 83 ~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~-----------g----~~~~~R~r~~~~~~~f~D~~~ 147 (298)
T 1nzj_A 83 DAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHG-----------P----DNAAVRIRQQHPVTQFTDQLR 147 (298)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCC-----------S----TTCEEEECCSSCCCEEEETTT
T ss_pred HHHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcC-----------C----CCCcEEEecCCcccceehhhC
Confidence 999999999999999999999999998753 356788876532 1 2479999987421 1234444
Q ss_pred EEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccccC----
Q psy17575 474 YRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLN---- 544 (832)
Q Consensus 474 ~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~---- 544 (832)
+.+.+.+. ...+|++| +|||||||+|||++|||||||||.||++++++|.+|+++||+..|. |.|+|
T Consensus 148 G~~~~~~~-~~~~D~VL~R~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG~~~p~---~~H~pll~~ 223 (298)
T 1nzj_A 148 GIIHADEK-LAREDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPD---YIHLPLALN 223 (298)
T ss_dssp EEEECCHH-HHHSCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCCCCE---EEEECBCCC
T ss_pred cccccCcc-cCCCCEEEECCCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcCCCCCe---EEEeeeeEC
Confidence 44433211 11123333 9999999999999999999999999999999999999999999995 56654
Q ss_pred CCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC--cccCHHH-HHHHHH
Q psy17575 545 VNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ--AVVSPNM-LEAVVR 614 (832)
Q Consensus 545 l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~--~~~~~~~-le~~~r 614 (832)
.+|+|||||+++..|++. +|+ +++.||++.+||+... +.++.+. |++.+.
T Consensus 224 ~~g~KLSKR~g~~~v~~~------~~~--------------~~~~~~l~~lG~~~~~~~~~~~~~~~l~~~~~ 276 (298)
T 1nzj_A 224 PQGAKLSKQNHAPALPKG------DPR--------------PVLIAALQFLGQQAEAHWQDFSVEQILQSAVK 276 (298)
T ss_dssp -------------CCCSS------CCH--------------HHHHHHHHHTTCCCCSCGGGSCHHHHHHHHHH
T ss_pred CCCCcccccCCccChhcC------Ccc--------------HHHHHHHHHcCCCCCcccccCCHHHHHHHHHH
Confidence 468999999998766432 343 3478999999998765 4677643 334333
No 13
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-56 Score=449.08 Aligned_cols=181 Identities=31% Similarity=0.509 Sum_probs=175.4
Q ss_pred HHHHHHHHHhCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHHHHHhhccCCCccchHHHHHHHHhCCC
Q psy17575 62 ADSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQSSIHLPLLVKYIVSKAL 141 (832)
Q Consensus 62 ~~~l~~lF~~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy~lAtk~k~~~~~~r~~l~~~I~~gkl 141 (832)
.++++++|++|||+|+||+||+||+++|++|..+|++|+. ..+||+++|+|||+|||++|++..+||++|++||++|+|
T Consensus 4 ~~~l~~lf~~iGL~e~kaket~kN~kls~~L~~~i~ea~~-~~~~dk~~g~LLy~latk~k~~~~~~r~~l~~~I~~gkl 82 (187)
T 3tl4_X 4 VEELTQLFSQVGFEDKKVKEIVKNKKVSDSLYKLIKETPS-DYQWNKSTRALVHNLASFVKGTDLPKSELIVNGIINGDL 82 (187)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHTTSHHHHHHHHHHHHTSCT-TCCCCHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHcCCChhHHHHHHhCHHHHHHHHHHHHHccc-cCCCCHHHHHHHHHHHHhccCccchhHHHHHHHHHhccC
Confidence 4789999999999999999999999999999999999997 577999999999999999999999999999999999999
Q ss_pred CCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHh--hCCCC
Q psy17575 142 DSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRT--LLKWA 219 (832)
Q Consensus 142 kt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vR~--~LkWA 219 (832)
+|++||+||++|+++++.++|.++||++|||||+||+|||+++|++||++|+++|+++||+ |+|+|||+||+ .||||
T Consensus 83 kt~~Qv~AAl~yl~~~~~~id~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~i~~~RY~-~~g~ll~~vr~~p~LkWA 161 (187)
T 3tl4_X 83 KTSLQVDAAFKYVKANGEASTKMGMNENSGVGIEITEDQVRNYVMQYIQENKERILTERYK-LVPGIFADVKNLKELKWA 161 (187)
T ss_dssp CSHHHHHHHHHHHHHHGGGCCHHHHHHTTTTTCCCCHHHHHHHHHHHHHHTHHHHHHHGGG-GHHHHHHHHHTCGGGTTS
T ss_pred CcHHHHHHHHHHHHhCCCCCCHHHHHHHCCCCeEeCHHHHHHHHHHHHHHhHHHHHHhccc-cHHHHHHHHhcccCCCCC
Confidence 9999999999999988545999999999999999999999999999999999999999999 99999999999 99999
Q ss_pred ChhhhHHHHHHHHHhhcCCCccccc
Q psy17575 220 DGKYIKSEVDVQVLNLLGPKTEADL 244 (832)
Q Consensus 220 d~k~vK~~vD~~~l~lLGPKte~d~ 244 (832)
||+.||++||+||+++||||||+|+
T Consensus 162 d~~~vK~~vD~~~l~lLGPKte~D~ 186 (187)
T 3tl4_X 162 DPRSFKPIIDQEVLKLLGPKDERDL 186 (187)
T ss_dssp CTTSHHHHHHHHHHHHHCSCCGGGC
T ss_pred CHHHHHHHHHHHHHHHcCCcccccc
Confidence 9999999999999999999999985
No 14
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.92 E-value=1.4e-26 Score=266.30 Aligned_cols=274 Identities=13% Similarity=0.089 Sum_probs=168.1
Q ss_pred ceEEeeCCCCCCcCchHHHHHHHHHHHH-----HHhcCCEEEEeccCCCccccc--------H-----------------
Q psy17575 319 KVRTRFPPEPNGILHIGHAKAININFGY-----AAAHNGICFLRYDDTNPEKEE--------E----------------- 368 (832)
Q Consensus 319 ~v~tRFaPsPtG~LHIGharaaL~n~l~-----Ar~~gG~~iLRiDDTDp~r~~--------~----------------- 368 (832)
.++..-||||||++||||+|+|++|+.+ ++.++|+|++||||||+.|.. +
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~ 100 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCH 100 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSS
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhH
Confidence 4555559999999999999999999666 577899999999999965544 3
Q ss_pred -----HHHHHHHHHHHHcCCCcCcccccch-hHH-HHHHHHHHHHHcC-CccccCCCHHHHh---c----cC---CCCCC
Q psy17575 369 -----KFFTGIKDMVQWLGYKPYQITHSSD-YFH-QLYEWAVKLIKKG-LAYVCHQKSDEMK---G----FN---PLPSP 430 (832)
Q Consensus 369 -----e~~~~I~edL~WLGl~pd~~~~qSd-~~~-~~ye~A~~Li~~G-~AY~C~Cs~eel~---~----~~---~~~~~ 430 (832)
.+.+.|+++|+|||+.||.. +||+ |.+ .|.+++.+|+++| .+|.|.+....+. . +- .....
T Consensus 101 ~~~~~~~~~~~~~~l~~Lgi~~D~~-~~se~~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~~~~~~~~~~~~~ 179 (523)
T 1irx_A 101 ESYAEHFMRKFEEEVEKLGIEVDLL-YASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPE 179 (523)
T ss_dssp SSHHHHHHHHHHHHHHTTTCCCEEE-EHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCTTCCSEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEE-echhhccchHHHHHHHHHHHchHHHHHHHHhhccccccccccCCceeccccchh
Confidence 39999999999999998876 8999 888 8889999999999 7776553322210 0 00 01112
Q ss_pred CCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCC-CCCce--EEEeeeCCCCCCCCceeEeeccceeeeeecCCCCc
Q psy17575 431 WRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG-KQDPV--AYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHI 507 (832)
Q Consensus 431 ~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~-~~D~V--~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gI 507 (832)
|+..+ ++ . .... ..++|++...... ..|++ .+|+.+ |. +| .+|+|+|+++|| .||+
T Consensus 180 ~~~~~-~~-~---------~~~~-~~~~~f~~~~g~~~~~d~~~G~g~~~w--~~----d~-~~~~~~l~~~vd--~~G~ 238 (523)
T 1irx_A 180 HRREA-EI-I---------EWDG-GWKVKYKCPEGHEGWVDIRSGNVKLRW--RV----DW-PMRWSHFGVDFE--PAGK 238 (523)
T ss_dssp TCCEE-CE-E---------EECS-SSCEEECCSSSCCCEECTTSSCEEECH--HH----HH-HHHHHHSCCCBC--CEEH
T ss_pred hCCcc-cc-c---------ccCC-CCceeeeecCCCccccCCcCCCCCCCC--Cc----ch-HhhHHHcCCCCc--CCCc
Confidence 33211 11 0 0111 1346666632111 12444 233221 10 22 478999988776 7888
Q ss_pred ceeeec--ccccccchhHHHHHHhcCCCCCCcccccccCCC--CcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCC
Q psy17575 508 THSLCT--KEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVN--YTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGF 583 (832)
Q Consensus 508 THvlRg--~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~l~--gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~ 583 (832)
+|+.+| .||. .++.+ .+||+..|...+++++... |.|||||+++. .++..+++. |
T Consensus 239 Dh~~~h~s~~~~----~~i~~-~alG~~~p~~~h~~~i~~~g~g~KmSKs~Gn~---------------i~~~~~~~~-~ 297 (523)
T 1irx_A 239 DHLVAGSSYDTG----KEIIK-EVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNV---------------ILLSDLYEV-L 297 (523)
T ss_dssp HHHSTTSHHHHH----HHHHH-HHHCCCCCBCCEECCEEESCC---------CC---------------CCHHHHHTT-S
T ss_pred CccCCCcchhhH----HHHHH-HHhCCCCCeEEEEEEEEeCCCCCCCCCcCCCC---------------CCHHHHHHH-c
Confidence 888876 4443 22222 7899988854444444445 88999999631 378899988 9
Q ss_pred CHHHHHHHHHHhCCCCCCcccCHH-HHHHHHHHhhccCCCceeEEecCc--ceEEeec
Q psy17575 584 PPEAINKFCARMGVTGAQAVVSPN-MLEAVVREVLNDTAPRVMVVIDPL--PLHIVNF 638 (832)
Q Consensus 584 ~PeAI~nfl~~lG~s~~~~~~~~~-~le~~~r~~l~~~a~R~~av~dp~--kl~i~N~ 638 (832)
.|+||++|++..|+. ++..++++ .|....+.+ +.. .+..+.+++. |+.|.|.
T Consensus 298 ~pdalR~~l~~~~~~-~~~~fs~~~~l~~~~~~~-~~~-~~~~~~~~~~~~~l~~~n~ 352 (523)
T 1irx_A 298 EPGLVRFIYARHRPN-KEIKIDLGLGILNLYDEF-EKV-ERIYFGVEGGKGDDEELRR 352 (523)
T ss_dssp CHHHHHHHHHSSCTT-SCEEECCSTTHHHHHHHH-HHH-HHHHTTSCC-----CHHHH
T ss_pred CHHHHHHHHHhcCCC-CCceeCcchhHHHHHHHH-HHH-HHHHhcccccchhhhhhcc
Confidence 999999999988874 46677777 555443322 111 1122334444 4777773
No 15
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.79 E-value=5.6e-19 Score=200.52 Aligned_cols=253 Identities=14% Similarity=0.132 Sum_probs=174.5
Q ss_pred CCCCCCcCchHHHHHHHHHHHHHHh-----cCCEEEEeccCCCccc---c----------cHHHHHHHHHHHHHcCCCc-
Q psy17575 325 PPEPNGILHIGHAKAININFGYAAA-----HNGICFLRYDDTNPEK---E----------EEKFFTGIKDMVQWLGYKP- 385 (832)
Q Consensus 325 aPsPtG~LHIGharaaL~n~l~Ar~-----~gG~~iLRiDDTDp~r---~----------~~e~~~~I~edL~WLGl~p- 385 (832)
+|+|+|++||||+|++++...+||. ++..|+.+|+|+|.+- . ...|.+.+.++++|||+.+
T Consensus 29 gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~~~LgI~~~ 108 (461)
T 1li5_A 29 GITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRP 108 (461)
T ss_dssp CCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 6888899999999999999998884 5679999999999752 1 3578999999999999996
Q ss_pred CcccccchhHHHHHHHHHHHHHcCCcccc------CCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEE
Q psy17575 386 YQITHSSDYFHQLYEWAVKLIKKGLAYVC------HQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLR 459 (832)
Q Consensus 386 d~~~~qSd~~~~~ye~A~~Li~~G~AY~C------~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR 459 (832)
+..+.+|+|.+.+.+..++|+++|+||.+ ||..+. . .+...|. +++ ++|..|. |
T Consensus 109 d~~~r~t~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~-~---~yg~lsg-~~~-------~~l~~g~--------r 168 (461)
T 1li5_A 109 DMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTD-P---TYGVLSR-QDL-------DQLQAGA--------R 168 (461)
T ss_dssp SBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGC-T---TTTTTTT-C-------------------------
T ss_pred cccccccchHHHHHHHHHHHHHCCCEEEecCCCEEEecccc-c---ccccccC-CCH-------HHhhcCC--------c
Confidence 66678999999999999999999999997 676541 1 1111121 111 2333332 2
Q ss_pred EEecccC-CCCCceEEEeeeCCCCCCCCce-eEeeccceeeee-ecCCCCcceeee--ccccc-ccchhHHHHHHhc-CC
Q psy17575 460 MKITLEE-GKQDPVAYRIKFLPHHRTGDSW-CIYPTYDYTHCL-CDSIEHITHSLC--TKEFQ-SRRSSYYWLCNAL-DI 532 (832)
Q Consensus 460 ~K~~~~~-~~~D~V~~Ri~~~~h~r~gd~~-~i~PtY~fA~~V-dD~l~gITHvlR--g~E~~-~~~~~~~~L~~aL-~~ 532 (832)
+..+... ...|+++++.....++.-...| ..+|.||.+|++ .+...|.++.|+ |.|++ .+.........++ |.
T Consensus 169 v~~~~~k~~p~Df~lwk~~~~g~~~w~s~WG~g~PgWhiecsam~~~~lg~~~dih~gG~Dl~fpH~~~~~aq~~a~~g~ 248 (461)
T 1li5_A 169 VDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDG 248 (461)
T ss_dssp ------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGTTTHHHHHHHHHHHHSSS
T ss_pred ccchhcccCccceEEEccCCCCCCcccCCCCCcCCCccchhHHHHHHHhCCCceEEeccCccCchHHHHHHHHHHHhcCC
Confidence 2221111 2369999986433333222345 358999998865 344558899999 99976 3333333334444 77
Q ss_pred CCCCccc-ccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHH
Q psy17575 533 YCPVQWE-YGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEA 611 (832)
Q Consensus 533 ~~P~~~e-f~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~ 611 (832)
+.|.+|- .+++.++|.|||||.++ ..++..+.++ |.|++|+-|++. +-..++..|+++.|..
T Consensus 249 ~~~~~~~h~g~v~~~G~KMSKS~GN---------------~v~~~dll~~-~g~dalR~~ll~-~~~~~~~~fs~~~l~~ 311 (461)
T 1li5_A 249 QYVNYWMHSGMVMVDREKMSKSLGN---------------FFTVRDVLKY-YDAETVRYFLMS-GHYRSQLNYSEENLKQ 311 (461)
T ss_dssp CCEEEECCBCCEEETTBCCCGGGTC---------------CCBHHHHHTT-SCHHHHHHHHHS-SCTTSCEEECHHHHHH
T ss_pred CCCcEEEEeeEEEECCeEccccCCC---------------ccChhHHhhh-CCHHHHHHHHHc-CCcCCCCCCCHHHHHH
Confidence 6565554 47788899999999963 1367777775 999999999997 5467788999988877
Q ss_pred HHH
Q psy17575 612 VVR 614 (832)
Q Consensus 612 ~~r 614 (832)
+.+
T Consensus 312 ~~~ 314 (461)
T 1li5_A 312 ARA 314 (461)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 16
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.73 E-value=7.3e-18 Score=192.38 Aligned_cols=266 Identities=15% Similarity=0.088 Sum_probs=169.6
Q ss_pred ceEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCC----------------cccccHHHHHHHHHHHHH
Q psy17575 319 KVRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTN----------------PEKEEEKFFTGIKDMVQW 380 (832)
Q Consensus 319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTD----------------p~r~~~e~~~~I~edL~W 380 (832)
-+++.-+|.|||+|||||+|++++...+||. ..|..++++.++| |..-..++.+.|.++++|
T Consensus 7 ~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 86 (497)
T 2csx_A 7 FYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWEF 86 (497)
T ss_dssp EEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999999999999999995 5999999999999 666677899999999999
Q ss_pred cCCCcCcccccch--hHHHHHHHHHHHHHcCCcccc-----CCCHHHHhccC-C----CCCCCCCC-ChhHhHHHHHHHH
Q psy17575 381 LGYKPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC-----HQKSDEMKGFN-P----LPSPWRER-PVEENVKLFEAMK 447 (832)
Q Consensus 381 LGl~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C-----~Cs~eel~~~~-~----~~~~~R~r-~~ee~L~~f~~m~ 447 (832)
||+.+|..+.+|+ |.+.+.+...+|+++|++|.| +|...+.--.. . ..|+ |+. +++. +
T Consensus 87 lgi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~-~~~~~~~~-------~- 157 (497)
T 2csx_A 87 LKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCP-IHQKKCEY-------I- 157 (497)
T ss_dssp TTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC------------------------------------------
T ss_pred hCCcCCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCC-CCCCCCeE-------E-
Confidence 9999997777777 888888899999999999998 57654321100 0 0111 111 1110 0
Q ss_pred cCcccCCCceEEEEecc-----------------------------cCCCCCceEEEeeeC---CCCCCCC-ceeEee--
Q psy17575 448 NGLIDEGEATLRMKITL-----------------------------EEGKQDPVAYRIKFL---PHHRTGD-SWCIYP-- 492 (832)
Q Consensus 448 ~g~~~~g~~~lR~K~~~-----------------------------~~~~~D~V~~Ri~~~---~h~r~gd-~~~i~P-- 492 (832)
....+.+|++. ..+..|+.+-|.... .+++-++ .|++|.
T Consensus 158 ------~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~~~~i~vW~ 231 (497)
T 2csx_A 158 ------KEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWF 231 (497)
T ss_dssp ------CCEEEEECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEEECSHH
T ss_pred ------ecCceEEEcHHHHHHHHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCCCCCceEEEec
Confidence 00122222110 012356666662110 0111111 233220
Q ss_pred --ccceeeeeec---CCCCcceeeecccccccch-hHHHHHHhcCCCCCCc-ccccccCCCCcccchhHHHHhhhcCccC
Q psy17575 493 --TYDYTHCLCD---SIEHITHSLCTKEFQSRRS-SYYWLCNALDIYCPVQ-WEYGRLNVNYTVVSKRKIAKLIEENIVN 565 (832)
Q Consensus 493 --tY~fA~~VdD---~l~gITHvlRg~E~~~~~~-~~~~L~~aL~~~~P~~-~ef~hL~l~gtkLSKRk~~~lv~~g~v~ 565 (832)
...|+.++.| ....+++.+.|.|++..+. ....+..++|+..|.. +..+++.++|.|||||+++ .
T Consensus 232 ds~~~~~s~~~~~~~~~~p~di~~~G~D~~~~H~~~~~a~l~~~g~~~~~~~~~~G~v~~~G~KMSKS~GN------~-- 303 (497)
T 2csx_A 232 DALFNYISALEDKVEIYWPADLHLVGKDILRFHTVYWPAFLMSLGYELPKKVFAHGWWTVEGKKMSKTLGN------V-- 303 (497)
T ss_dssp HHHTHHHHTTTTTHHHHCSCSCEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEESSSSBCCTTTTC------C--
T ss_pred ccchhhcccCCCcchhhCCceEEEeecchhHhHHHHHHHHHHHcCCCCCcEEEECcEEEeCCceeCCcCCC------C--
Confidence 0012333333 2336788899999976222 2223446778877763 3467777899999999964 1
Q ss_pred CCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHH
Q psy17575 566 DWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVRE 615 (832)
Q Consensus 566 gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~ 615 (832)
.++..+.+ +|.++|++-|++..+-...+..|+++.+....+.
T Consensus 304 -------i~~~dli~-~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~ 345 (497)
T 2csx_A 304 -------VDPYEVVQ-EYGLDEVRYFLLREVPFGQDGDFSKKAILNRING 345 (497)
T ss_dssp -------CCHHHHHH-HHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHH
T ss_pred -------CCHHHHHH-HCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHH
Confidence 24555555 5889999999999887788899999988776544
No 17
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.67 E-value=2.5e-16 Score=178.47 Aligned_cols=252 Identities=14% Similarity=0.110 Sum_probs=171.3
Q ss_pred CCCCCCcCchHHHHHHHHHHHHHH-----hcCCEEEEeccCCCcccc-------------cHHHHHHHHHHHHHcCCCcC
Q psy17575 325 PPEPNGILHIGHAKAININFGYAA-----AHNGICFLRYDDTNPEKE-------------EEKFFTGIKDMVQWLGYKPY 386 (832)
Q Consensus 325 aPsPtG~LHIGharaaL~n~l~Ar-----~~gG~~iLRiDDTDp~r~-------------~~e~~~~I~edL~WLGl~pd 386 (832)
+|+|+|++||||+|++++...++| .+...|+..+||.|.+-. ...|.+.+.+++++||+.++
T Consensus 32 GPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~LgI~~d 111 (462)
T 3tqo_A 32 GMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKALRVLSP 111 (462)
T ss_dssp CCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred CCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 699999999999999998866665 366699999999997532 35889999999999999986
Q ss_pred c-ccccchhHHHHHHHHHHHHHcCCcc------ccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEE
Q psy17575 387 Q-ITHSSDYFHQLYEWAVKLIKKGLAY------VCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLR 459 (832)
Q Consensus 387 ~-~~~qSd~~~~~ye~A~~Li~~G~AY------~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR 459 (832)
. .++.|+|.+.+.+.+++|+++|+|| ++||.+.. ..+..-. .++.+ +|..|. |
T Consensus 112 ~~~praTe~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~----~~yg~Ls-~~~~~-------~~~~g~--------r 171 (462)
T 3tqo_A 112 DQEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRF----KDYGKLS-HRHLD-------ELQAGA--------R 171 (462)
T ss_dssp SBCCBGGGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTC----TTTTTTT-TCSCC----------------------
T ss_pred ccccChhhHHHHHHHHHHHHHHCCCEEEecCCcEEeccccc----ccccccc-CCChH-------HhhccC--------c
Confidence 4 4588999999999999999999999 45665431 1111111 11111 222221 2
Q ss_pred EEecc-cCCCCCceEEEeeeCCCCCCCCce-eEeeccceeeeeec-CCCCcceeee--ccccc-ccchhHHHHHHhc-CC
Q psy17575 460 MKITL-EEGKQDPVAYRIKFLPHHRTGDSW-CIYPTYDYTHCLCD-SIEHITHSLC--TKEFQ-SRRSSYYWLCNAL-DI 532 (832)
Q Consensus 460 ~K~~~-~~~~~D~V~~Ri~~~~h~r~gd~~-~i~PtY~fA~~VdD-~l~gITHvlR--g~E~~-~~~~~~~~L~~aL-~~ 532 (832)
..++. .....|+++|+.....+|.=..-| .+.|.||+.|++-. ...|-+..|+ |.|++ ++....+....++ |.
T Consensus 172 ~~~~~~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGWHiEcsam~~~~lG~~~dih~gG~Dl~FpHheneiaqs~a~~g~ 251 (462)
T 3tqo_A 172 VEVSDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKFPHHENEIAQSEAGEEK 251 (462)
T ss_dssp -----CCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHHCSSEEEEEEEGGGTTTHHHHHHHHHHHHHSS
T ss_pred cccccccCCccccceeeecCCCCCcccCCCCCCCCCCceehHHHHHHhcCCCeEEEccccccccHHHHhHHHHHHHHcCC
Confidence 22221 112369999996544443211223 46999999998833 3455555554 88887 5666666666665 55
Q ss_pred CCCCccc-ccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHH
Q psy17575 533 YCPVQWE-YGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEA 611 (832)
Q Consensus 533 ~~P~~~e-f~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~ 611 (832)
+.+.+|- -+++.++|.|||||.++ ..|+..+.+. |.|++|+-|++... .+++..|+++.|+.
T Consensus 252 p~~~~w~H~g~v~~~G~KMSKSlGN---------------~i~~~dll~~-~g~dalR~~lls~~-yr~~l~fs~~~l~~ 314 (462)
T 3tqo_A 252 PFVKLWMHAGLLEINKEKMSKSLGN---------------IISIREALKE-SDVEVLRYFLLSGH-YRNPLSYSKENLEN 314 (462)
T ss_dssp CCEEEEEEECCEEETTEECCTTTTC---------------CCBHHHHHHH-SCHHHHHHHHHHSC-TTSCEEECHHHHHH
T ss_pred CcceEEEEccEEecCCcCccccCCC---------------cccHHHHHhh-cChHHhhhhhccCC-CCCCcCcCHHHHHH
Confidence 3344443 46678899999999864 2367777764 99999999998765 46677888888876
Q ss_pred HH
Q psy17575 612 VV 613 (832)
Q Consensus 612 ~~ 613 (832)
..
T Consensus 315 a~ 316 (462)
T 3tqo_A 315 GR 316 (462)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 18
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.67 E-value=3.3e-16 Score=175.50 Aligned_cols=265 Identities=13% Similarity=0.074 Sum_probs=158.3
Q ss_pred eeCCCCCCcCchHHHHHHHHHHHHHHh-----cCCEEEEeccCCCcccc-------------cHHHHHHHHHHHHHcCCC
Q psy17575 323 RFPPEPNGILHIGHAKAININFGYAAA-----HNGICFLRYDDTNPEKE-------------EEKFFTGIKDMVQWLGYK 384 (832)
Q Consensus 323 RFaPsPtG~LHIGharaaL~n~l~Ar~-----~gG~~iLRiDDTDp~r~-------------~~e~~~~I~edL~WLGl~ 384 (832)
-.+|+|+|++||||+|++++...+||- ++..++..+||.|.+.. ...+.+.|.+++++||+.
T Consensus 44 ~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~~Lgi~ 123 (414)
T 3c8z_A 44 VCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALRVL 123 (414)
T ss_dssp ECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred eCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 447999999999999999998887776 77899999999986532 357888999999999998
Q ss_pred -cCcccccchhHHHHHHHHHHHHHcCCccccCCCHH-----HHhccCCCCCCCCCCChhHhHHHHHHHHcCccc-CCCce
Q psy17575 385 -PYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSD-----EMKGFNPLPSPWRERPVEENVKLFEAMKNGLID-EGEAT 457 (832)
Q Consensus 385 -pd~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~e-----el~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~-~g~~~ 457 (832)
+|.....|+|.+.+.+...+|+++|.+|.+.|+.+ ++.++... +....+..+ +|..+..+ .+...
T Consensus 124 ~~d~~~r~t~~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f~~~~~~~~-g~l~~~~~~-------~~~~~~~~~~~~~~ 195 (414)
T 3c8z_A 124 PPHDYVAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADATAQF-GYESGYDRD-------TMLTLFAERGGDPD 195 (414)
T ss_dssp CCSEEEEGGGCHHHHHHHHHHHHHHTSEEECSCSSCCCEEECTTSSTTT-TTTTCCCHH-------HHHHHHHHTTCCTT
T ss_pred CCcceecccchHHHHHHHHHHHHHCCCEEeccCCcCCCEEEEchhhhhh-HhhcCCCHH-------HHHHHHhhcccccc
Confidence 77767778888888899999999999999876411 11222110 000011222 22221000 01110
Q ss_pred EEEEecccCCCCCceEEEeeeCCCCCCCCce-eEeeccceeeee--ecCC-CCcceeeecccccc-cchhHHHHHHhc-C
Q psy17575 458 LRMKITLEEGKQDPVAYRIKFLPHHRTGDSW-CIYPTYDYTHCL--CDSI-EHITHSLCTKEFQS-RRSSYYWLCNAL-D 531 (832)
Q Consensus 458 lR~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~-~i~PtY~fA~~V--dD~l-~gITHvlRg~E~~~-~~~~~~~L~~aL-~ 531 (832)
........|++.|++....++.=...| .++|.||..|.. ..++ ..+.--+-|.|++. +......+..++ |
T Consensus 196 ----~~~k~~~~D~~lWk~~~pg~~~Wda~~g~g~pgWhiec~a~~~~~~g~~~di~~~G~D~~~~H~~~~~a~~~a~~g 271 (414)
T 3c8z_A 196 ----RPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSDLIFPHHEYSAAHAESVTG 271 (414)
T ss_dssp ----CTTCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHTCSCEEEEEEEGGGTTTHHHHHHHHHHHHHC
T ss_pred ----ccccCCcchhhhcCCCCCCCCCCCCCCCCCCCCccchhHHHHHHhcCCCceEEEeccccccHHHHHHHHHHHHhcC
Confidence 000112358888887543332100112 247888776532 1111 11222233666553 222223444455 6
Q ss_pred CCCCC-cc-cccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHH
Q psy17575 532 IYCPV-QW-EYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNML 609 (832)
Q Consensus 532 ~~~P~-~~-ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~l 609 (832)
..+|. .| +++++.++|.|||||+++ ..++..+.++||.|++++-|++. +-..++..|+++.|
T Consensus 272 ~~~~~~~~~h~g~v~~~G~KMSKS~GN---------------~v~~~~ll~~g~g~D~lR~~ll~-~~~~~d~~fs~~~l 335 (414)
T 3c8z_A 272 ERRFARHYVHTGMIGWDGHKMSKSRGN---------------LVLVSQLRAQGVDPSAIRLGLFS-GHYREDRFWSNEVL 335 (414)
T ss_dssp CSCSEEEEEEECCBC----------------------------CBHHHHHHTTCCHHHHHHHHHT-SCTTSCBCCCHHHH
T ss_pred CCCcCeEEEEcCEEecCCeEcccccCC---------------cCCHHHHhhccCCcchheeEEEe-cCcCCCCCcCHHHH
Confidence 64433 33 347889999999999974 24789999999999999999998 66677889999988
Q ss_pred HHHHHH
Q psy17575 610 EAVVRE 615 (832)
Q Consensus 610 e~~~r~ 615 (832)
....+.
T Consensus 336 ~~~~~~ 341 (414)
T 3c8z_A 336 DEANAR 341 (414)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876553
No 19
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=99.63 E-value=3.8e-16 Score=174.15 Aligned_cols=192 Identities=9% Similarity=0.019 Sum_probs=129.7
Q ss_pred cHHHHHHhhhhcCC--ceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccC----CCcccccHH--------H
Q psy17575 305 THDLLREHIKYTGG--KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDD----TNPEKEEEK--------F 370 (832)
Q Consensus 305 ~~~~~~~hl~~~~~--~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDD----TDp~r~~~e--------~ 370 (832)
+++.|++.|+..+. .|.++|.| ||.|||||++.|+.+|.+++ .|+.++++|.| |+..+...+ +
T Consensus 25 ~~e~L~~~L~~~~~p~~vy~G~~P--TG~LHlG~~~~al~~~~~~q-~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~ 101 (394)
T 2dlc_X 25 NPQIIKDVLEVQKRHLKLYWGTAP--TGRPHCGYFVPMTKLADFLK-AGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYY 101 (394)
T ss_dssp CHHHHHHHHHTSCSCCEEEEEECC--CSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHH
T ss_pred CHHHHHHHHHccCCCeEEEEEeCC--CCCccHHHHHHHHHHHHHHH-cCCcEEEEEcCCccccCCCCCcHHHHHHHHHHH
Confidence 36788888886443 48899988 79999999999999999998 89999999999 864332222 4
Q ss_pred HHHHHHHHHHcCCCcCc--ccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHc
Q psy17575 371 FTGIKDMVQWLGYKPYQ--ITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKN 448 (832)
Q Consensus 371 ~~~I~edL~WLGl~pd~--~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~ 448 (832)
...|..+|.|+|++|++ +.+||+++. +-+++..++ .|.|+||..++++....
T Consensus 102 ~~~i~~~l~a~Gldp~k~~i~~qS~~~~-~~~~~~~~~----~l~~~~t~~~l~r~~~~--------------------- 155 (394)
T 2dlc_X 102 ELTIKAILRSINVPIEKLKFVVGSSYQL-TPDYTMDIF----RLSNIVSQNDAKRAGAD--------------------- 155 (394)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEETHHHHT-SHHHHHHHH----HHHTTSCHHHHHHHTTT---------------------
T ss_pred HHHHHHHHHHcCCChhHcEEEeCchhcc-hHHHHHHHH----HHhCcCcHHHHhcccHh---------------------
Confidence 46788899999999995 789999763 223444444 78999999988753100
Q ss_pred CcccCCCceEEEEecccCCCCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHH
Q psy17575 449 GLIDEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCN 528 (832)
Q Consensus 449 g~~~~g~~~lR~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~ 528 (832)
..|. .++ . ..| .-+|..-.+.|..+++++|+++|.|...+...+..|+.
T Consensus 156 --------~~r~----~~~---~-----------~~g-----~~~YP~lQaaD~l~~~~~~v~~G~DQ~~~~~l~rdl~~ 204 (394)
T 2dlc_X 156 --------VVKQ----VAN---P-----------LLS-----GLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLAEENLP 204 (394)
T ss_dssp --------TSCC----CSS---C-----------CTH-----HHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGG
T ss_pred --------hhcc----cCC---c-----------cce-----eeechhHhhccHhhhCCCEEecCccHHHHHHHHHHHHH
Confidence 0000 000 0 001 12444444556667999999999999999999999999
Q ss_pred hcCCCCCCccccccc-CCC-CcccchhHHH
Q psy17575 529 ALDIYCPVQWEYGRL-NVN-YTVVSKRKIA 556 (832)
Q Consensus 529 aL~~~~P~~~ef~hL-~l~-gtkLSKRk~~ 556 (832)
.+|+..|.......| .++ |+|||||..+
T Consensus 205 r~~~~~p~~l~~pll~gl~~G~KMSKS~~n 234 (394)
T 2dlc_X 205 SLGYKKRAHLMNPMVPGLAQGGKMSASDPN 234 (394)
T ss_dssp GGTCCCCEEEEECCCCCCC----------C
T ss_pred HcCCCCCEEEecccccCCCCCCcCCCCCCC
Confidence 999888853332222 346 8999999864
No 20
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.60 E-value=3.7e-15 Score=169.97 Aligned_cols=274 Identities=17% Similarity=0.045 Sum_probs=166.9
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCC----------------cccccHHHHHHHHHHHHHc
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTN----------------PEKEEEKFFTGIKDMVQWL 381 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTD----------------p~r~~~e~~~~I~edL~WL 381 (832)
+++--+|.|||+|||||+|++++...+||. ..|.-++++.+|| |..-..++.+.|.+++++|
T Consensus 6 ~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 85 (500)
T 2d5b_A 6 YVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLL 85 (500)
T ss_dssp EEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 566777899999999999999999999994 5999999999998 5555678899999999999
Q ss_pred CCCcCcccccch--hHHHHHHHHHHHHHcCCcccc-----CCCHH-------HHhccCCCCCCCCCC-ChhH--------
Q psy17575 382 GYKPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC-----HQKSD-------EMKGFNPLPSPWRER-PVEE-------- 438 (832)
Q Consensus 382 Gl~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C-----~Cs~e-------el~~~~~~~~~~R~r-~~ee-------- 438 (832)
|+.+|..+.+++ |.+...+...+|.++|++|.+ .|... ++.. ..|+ |+. +++.
T Consensus 86 gi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~---g~c~-~~~~~v~~~~~~~wf~ 161 (500)
T 2d5b_A 86 GIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVE---GLCP-IHGRPVERRKEGNYFF 161 (500)
T ss_dssp TCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBT---TBCT-TTCSBCEEEEEEEEEE
T ss_pred CCcCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhccC---CcCC-CCCCeeeEEecCceEE
Confidence 999997666777 888888888999999999987 24332 2211 0111 111 1110
Q ss_pred hHHHHHHHHcCcccCCC-ceEE--EEe---cc-cCCCCCceEEEeeeC---CCCCCC-CceeEee------------ccc
Q psy17575 439 NVKLFEAMKNGLIDEGE-ATLR--MKI---TL-EEGKQDPVAYRIKFL---PHHRTG-DSWCIYP------------TYD 495 (832)
Q Consensus 439 ~L~~f~~m~~g~~~~g~-~~lR--~K~---~~-~~~~~D~V~~Ri~~~---~h~r~g-d~~~i~P------------tY~ 495 (832)
.+..|.+.....++++. ...- .+- ++ .++..|+.+-|.... .+++-+ .++++|- .|+
T Consensus 162 ~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~~~~v~~vWfds~~~y~~~~g~~ 241 (500)
T 2d5b_A 162 RMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYP 241 (500)
T ss_dssp CGGGGHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHTTTTT
T ss_pred EcHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCCCCCCeeEEccccchhhHHHcCCC
Confidence 00001111000001100 0000 000 00 012356666552100 010000 0111110 233
Q ss_pred eeeeeecCCCCcceeeecccccccch-hHHHHHHhcCCCCCCc-ccccccCC-CCcccchhHHHHhhhcCccCCCCCcch
Q psy17575 496 YTHCLCDSIEHITHSLCTKEFQSRRS-SYYWLCNALDIYCPVQ-WEYGRLNV-NYTVVSKRKIAKLIEENIVNDWDDPRL 572 (832)
Q Consensus 496 fA~~VdD~l~gITHvlRg~E~~~~~~-~~~~L~~aL~~~~P~~-~ef~hL~l-~gtkLSKRk~~~lv~~g~v~gwdDPr~ 572 (832)
..+..++ ..+.+..+.|.|+...+. ....+..++|+..|.. +..+++.. +|.|||||+++ .|
T Consensus 242 ~~~~~~~-~~p~di~~~G~D~~~fh~~~~~a~~~~~g~~~~~~v~~~G~v~~~~G~KMSKS~GN------~i-------- 306 (500)
T 2d5b_A 242 EGEAYRT-FWPHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGN------VV-------- 306 (500)
T ss_dssp TCHHHHH-HGGGEEEEEEGGGHHHHHTHHHHHHHHHTCCCCSEEEEECCEECTTSSCCCTTTTC------CC--------
T ss_pred CCchHHH-cCCCeEEEEeechhhhHHHHHHHHHHHcCCCCCcEEEECceEEeCCCCcccccCCC------CC--------
Confidence 2211111 225678888999986222 2224556778877763 34678888 89999999964 22
Q ss_pred hhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHH
Q psy17575 573 FTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVR 614 (832)
Q Consensus 573 ~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r 614 (832)
++..+.+ +|.++|++-|++..+-...+..|+++.+.....
T Consensus 307 -~p~d~i~-~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~ 346 (500)
T 2d5b_A 307 -DPFALLE-KYGRDALRYYLLREIPYGQDTPVSEEALRTRYE 346 (500)
T ss_dssp -CHHHHHH-HHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHH
T ss_pred -CHHHHHH-hcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHH
Confidence 4555554 588999999999877777889999998877554
No 21
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.50 E-value=1.6e-13 Score=156.62 Aligned_cols=256 Identities=14% Similarity=0.106 Sum_probs=154.4
Q ss_pred CCCCCCcCchHHHHHHHHHHHHHH-----hcCCEEEEeccCC----------Ccccc-------------cHHHHHHHHH
Q psy17575 325 PPEPNGILHIGHAKAININFGYAA-----AHNGICFLRYDDT----------NPEKE-------------EEKFFTGIKD 376 (832)
Q Consensus 325 aPsPtG~LHIGharaaL~n~l~Ar-----~~gG~~iLRiDDT----------Dp~r~-------------~~e~~~~I~e 376 (832)
+|+|+|++||||||+.++-..++| .+.-.|+..|+|+ |.+-. ...|.+.+.+
T Consensus 49 gPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~~~~~f~~ 128 (501)
T 3sp1_A 49 GPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEFFTEAFFN 128 (501)
T ss_dssp CCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHHHHHHHHHH
T ss_pred CCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 588889999999999988755554 4667888889998 44321 3578999999
Q ss_pred HHHHcCCCcC-cccccchhHHHHHHHHHHHHHcCCccc-----cCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCc
Q psy17575 377 MVQWLGYKPY-QITHSSDYFHQLYEWAVKLIKKGLAYV-----CHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGL 450 (832)
Q Consensus 377 dL~WLGl~pd-~~~~qSd~~~~~ye~A~~Li~~G~AY~-----C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~ 450 (832)
+++.||+.++ ..+..+++.+...+...+|+++|+||. .||... ...+ +.-+ .+ +. -++|..|.
T Consensus 129 d~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~-f~~y-G~ls-~~--~~------~~~~~~g~ 197 (501)
T 3sp1_A 129 DCRKLNIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC-FKSY-GEMA-GI--DL------IDKDMTLP 197 (501)
T ss_dssp HHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG-CTTT-TTTT-C-------------------
T ss_pred HHHHcCCCCCCcccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc-cCCc-cccC-CC--Ch------hhhhccCC
Confidence 9999999876 345678999999999999999999995 355443 1111 1111 11 11 02344432
Q ss_pred ccCCCceEEEEec-ccCCCCCceEEEee--eCCC-CCCCCce-eEeeccceeeee-ecCCCCcc--eeeeccccc-ccch
Q psy17575 451 IDEGEATLRMKIT-LEEGKQDPVAYRIK--FLPH-HRTGDSW-CIYPTYDYTHCL-CDSIEHIT--HSLCTKEFQ-SRRS 521 (832)
Q Consensus 451 ~~~g~~~lR~K~~-~~~~~~D~V~~Ri~--~~~h-~r~gd~~-~i~PtY~fA~~V-dD~l~gIT--HvlRg~E~~-~~~~ 521 (832)
|..++ ......|+++|+-. ..++ +.=.+-| .+.|.+|..|++ .....|-+ .-.=|.|++ ++..
T Consensus 198 --------r~~~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGWhiEcsam~~~~lg~~~DIH~gG~DLifpHhe 269 (501)
T 3sp1_A 198 --------RVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDALDIHLGGVDHIGVHHI 269 (501)
T ss_dssp --------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECHHHHHHHHHHHHTTTCCCEEEEEGGGTTTHHH
T ss_pred --------ccCcccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCchHHHHHHHHHHcCCCceEEeeccccccchHH
Confidence 11111 11234799999641 1122 1001123 369999988765 22333433 333489997 5666
Q ss_pred hHHHHHHhc-CCCCCCcccc-cccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCC
Q psy17575 522 SYYWLCNAL-DIYCPVQWEY-GRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTG 599 (832)
Q Consensus 522 ~~~~L~~aL-~~~~P~~~ef-~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~ 599 (832)
....+..++ |-+.+.+|-- +++.++|.||||+.++ ..|+..+.++||.|++|+-|++... .+
T Consensus 270 neiAqs~a~~g~~~~~~w~H~g~v~~~G~KMSKSlGN---------------~it~~dll~~gyg~d~lR~~lls~~-yr 333 (501)
T 3sp1_A 270 NEIAIAECFLNKKWCDVFVHGEFLIMDYNKMSKSRGN---------------FITVKDLEDQNFSPLDFRYLCLTSH-YR 333 (501)
T ss_dssp HHHHHHHHHHTSCCCSEEEEECCEECC-------------------------CCCHHHHHHTTCCHHHHHHHHHTSC-TT
T ss_pred HHHHHHHHccCCCCCeEEEEeeeEeeCCeEccccCCC---------------cCCHHHHHhcCCCHHHHHHHHHhcc-CC
Confidence 666666666 4333444543 7888999999999975 2478999999999999999998763 56
Q ss_pred CCcccCHHHHHHHHHH
Q psy17575 600 AQAVVSPNMLEAVVRE 615 (832)
Q Consensus 600 ~~~~~~~~~le~~~r~ 615 (832)
++..|+++.|+...+.
T Consensus 334 ~~l~fs~~~l~~a~~~ 349 (501)
T 3sp1_A 334 NQLKFSLDNLQASKIA 349 (501)
T ss_dssp SCEECCHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHh
Confidence 7788998888775544
No 22
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=99.38 E-value=2.9e-12 Score=148.45 Aligned_cols=277 Identities=13% Similarity=0.050 Sum_probs=159.8
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHH--hcCCE---EEEeccCC-------------CcccccHHHHHHHHHHHHHc
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAA--AHNGI---CFLRYDDT-------------NPEKEEEKFFTGIKDMVQWL 381 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar--~~gG~---~iLRiDDT-------------Dp~r~~~e~~~~I~edL~WL 381 (832)
+++--+|.|||+|||||+|++++...+|| +..|. |+.-+||. +|......+.+.|.+++++|
T Consensus 21 ~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 100 (560)
T 3h99_A 21 LVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGF 100 (560)
T ss_dssp EEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHc
Confidence 67788899999999999999999988888 44554 44445543 24455678899999999999
Q ss_pred CCCcCcccccc--hhHHHHHHHHHHHHHcCCcc-------ccCC-----CHHHHhccC---------CCCC-CCCC-CCh
Q psy17575 382 GYKPYQITHSS--DYFHQLYEWAVKLIKKGLAY-------VCHQ-----KSDEMKGFN---------PLPS-PWRE-RPV 436 (832)
Q Consensus 382 Gl~pd~~~~qS--d~~~~~ye~A~~Li~~G~AY-------~C~C-----s~eel~~~~---------~~~~-~~R~-r~~ 436 (832)
|+.+|..+..+ .+.+...+...+|.++|.+| .|.. +..++...- +..| .|.. ...
T Consensus 101 gi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd~ce~cg~~~~~ 180 (560)
T 3h99_A 101 NISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSP 180 (560)
T ss_dssp TCCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETTBCTTTCCBCCG
T ss_pred CCCCCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccchhhhccccCCh
Confidence 99999654344 34444456677899999999 3321 112221100 0000 0000 000
Q ss_pred hHhHHHHHHHHcCcc-cCC-Cc------eEEEEecc--------------------------cCCCCCceEEEeeeC---
Q psy17575 437 EENVKLFEAMKNGLI-DEG-EA------TLRMKITL--------------------------EEGKQDPVAYRIKFL--- 479 (832)
Q Consensus 437 ee~L~~f~~m~~g~~-~~g-~~------~lR~K~~~--------------------------~~~~~D~V~~Ri~~~--- 479 (832)
. ++.+... ..| .. .+.|+++. ..+..|+.+-|-...
T Consensus 181 ~-------~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~ 253 (560)
T 3h99_A 181 T-------ELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGF 253 (560)
T ss_dssp G-------GCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCEECEEESSCSSC
T ss_pred h-------hhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCCCCCccccCCcCCe
Confidence 0 0000000 000 01 12222210 013456666663311
Q ss_pred CCCCCCCceeEeeccc----eeeee------------------ecCCCCcceeeecccccccc-hhHHHHHHhcCCCCCC
Q psy17575 480 PHHRTGDSWCIYPTYD----YTHCL------------------CDSIEHITHSLCTKEFQSRR-SSYYWLCNALDIYCPV 536 (832)
Q Consensus 480 ~h~r~gd~~~i~PtY~----fA~~V------------------dD~l~gITHvlRg~E~~~~~-~~~~~L~~aL~~~~P~ 536 (832)
+-|-. ++-++|.-++ |..++ .|....+.|++ |.|++... ..+..++.++|+..|.
T Consensus 254 ~iP~~-~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~-G~D~~~fh~~~~~a~l~~~g~~~p~ 331 (560)
T 3h99_A 254 EIPNA-PGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFI-GKDIVYFLSLFWPAMLEGSNFRKPS 331 (560)
T ss_dssp BCTTC-TTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEE-EGGGHHHHHTHHHHHHHHTTBCCCS
T ss_pred eCCCC-CCceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEe-ccccchhHHHHHHHHHHhCCCCCCc
Confidence 11111 1122221110 10011 23444567777 99988633 3333578889988784
Q ss_pred cc-cccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCC-CCcccCHHHHHH-HH
Q psy17575 537 QW-EYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTG-AQAVVSPNMLEA-VV 613 (832)
Q Consensus 537 ~~-ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~-~~~~~~~~~le~-~~ 613 (832)
.. -.+++.++|.|||||+++ . .++..+.+. |.++|++-|++..+... .+..|+++.+.+ .+
T Consensus 332 ~v~~hg~v~~~G~KMSKS~GN------v---------v~p~d~i~~-~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~ 395 (560)
T 3h99_A 332 NLFVHGYVTVNGAKMSKSRGT------F---------IKASTWLNH-FDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVN 395 (560)
T ss_dssp EEEEECCEEETTEECCTTTTC------C---------CBHHHHHHH-SCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHH
T ss_pred EEEEEeEEEeCCeeccccCCC------c---------CCHHHHHHH-cCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHH
Confidence 32 257777899999999964 2 256666665 89999999999887544 688999988764 56
Q ss_pred HHhhccCC
Q psy17575 614 REVLNDTA 621 (832)
Q Consensus 614 r~~l~~~a 621 (832)
++.++...
T Consensus 396 ~~l~~~l~ 403 (560)
T 3h99_A 396 ADIVNKVV 403 (560)
T ss_dssp HHCCCCCT
T ss_pred HHHHHHHH
Confidence 66665543
No 23
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.38 E-value=5.4e-13 Score=155.83 Aligned_cols=246 Identities=12% Similarity=-0.036 Sum_probs=138.7
Q ss_pred CCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEe---ccCCC------------------c------------------
Q psy17575 325 PPEPNGILHIGHAKAININFGYAAA--HNGICFLR---YDDTN------------------P------------------ 363 (832)
Q Consensus 325 aPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLR---iDDTD------------------p------------------ 363 (832)
.|.|||++||||+|++++-..+||- ..|-=+.| |.|.+ +
T Consensus 111 spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~~y~~~~~~ 190 (592)
T 1iq0_A 111 SVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGRAYVRLHQD 190 (592)
T ss_dssp CCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHHHHHHHHHH
Confidence 6999999999999999987777663 33444444 45542 1
Q ss_pred ----------------------ccccHHHHHHHHHHHHHcCCCcCcccccchh--HHHHHHHHHHHHHcCCccccCCCHH
Q psy17575 364 ----------------------EKEEEKFFTGIKDMVQWLGYKPYQITHSSDY--FHQLYEWAVKLIKKGLAYVCHQKSD 419 (832)
Q Consensus 364 ----------------------~r~~~e~~~~I~edL~WLGl~pd~~~~qSd~--~~~~ye~A~~Li~~G~AY~C~Cs~e 419 (832)
.+-...+.+.|.++++|||+.+|.....|++ .+.+.+...+|.++|.+|.|.-.
T Consensus 191 ~~~~~~~~~a~~~~~~~e~g~~~~~~~~~~~~~~~~~~~LgI~~D~~~~es~~~~~~~v~~~~~~L~~kG~~y~~~~g-- 268 (592)
T 1iq0_A 191 PEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALLEQSPHVFRPREG-- 268 (592)
T ss_dssp TTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHHHTTSTTEECCSSS--
T ss_pred HHhhhHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHcCCEeEEeccCCcccccchHHHHHHHHHHCCCcccCccc--
Confidence 1122356778999999999999876667766 44666778899999999988211
Q ss_pred HHhccCCCCCCCCCCChhHhHHHHHHHHcCcccC-CCceEEEEecccCC--CCCc--eEE--------Eeee-CCCCCCC
Q psy17575 420 EMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDE-GEATLRMKITLEEG--KQDP--VAY--------RIKF-LPHHRTG 485 (832)
Q Consensus 420 el~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~-g~~~lR~K~~~~~~--~~D~--V~~--------Ri~~-~~h~r~g 485 (832)
...+. .|-.. ++ | |...+ +..+++ |-+-... ..|. +.+ |... ...|..
T Consensus 269 ---~~~G~--~~~~~--~~----~-----g~~~~l~~~vi~-ksdG~~~Y~~~D~a~~~~Kl~l~~~~~~~~~~~~p~~- 330 (592)
T 1iq0_A 269 ---KYAGA--LVMDA--SP----V-----IPGLEDPFFVLL-RSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYP- 330 (592)
T ss_dssp ---TTTTC--EEEEC--TT----T-----SCSCSCCEEEEE-CTTSCBCHHHHHHHHHHHHTTSSCCCEEEECCCSSCT-
T ss_pred ---CcCCC--EEEec--hh----c-----CCCCCCCceEEE-ecCCceEEecchHHHHHHHhhhhhhhhhhhhhcCcch-
Confidence 10110 00000 00 0 10000 111211 1110000 1222 222 2211 011111
Q ss_pred CceeEeeccceeeeeecCCCCccee--eecccccccchhHHHHHHhcCCCC-CCcc-cc--cccCCCCcccchhHHHHhh
Q psy17575 486 DSWCIYPTYDYTHCLCDSIEHITHS--LCTKEFQSRRSSYYWLCNALDIYC-PVQW-EY--GRLNVNYTVVSKRKIAKLI 559 (832)
Q Consensus 486 d~~~i~PtY~fA~~VdD~l~gITHv--lRg~E~~~~~~~~~~L~~aL~~~~-P~~~-ef--~hL~l~gtkLSKRk~~~lv 559 (832)
.|.|+- -|+.-...+.+|+ |.|.||..+.+++..++.+||+.. +..| ++ +.+.++|.|||||+++.
T Consensus 331 -----r~~w~~-~g~~~~~~~~~~~iyV~g~~h~~~~~~~~~~~~alG~~~~~~~~~H~~~g~v~~~g~KMSKr~Gn~-- 402 (592)
T 1iq0_A 331 -----GLRTSA-PEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLA-- 402 (592)
T ss_dssp -----TCEEEE-EEEEECCCCCSEEEEEEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEEETTBCSCC----C--
T ss_pred -----hhcccc-cCcccCCCCCCEEEEEEeccHHHHHHHHHHHHHHcCCCCCCCcEEEEEeeEEEcCCCcccCCCCCc--
Confidence 122221 2332233466777 789999999999989999999854 3333 34 44778899999999742
Q ss_pred hcCccCCCCCcchhhHHHHHHcC------------------------CCHHHHHHHHHHhCCCCCCcccCHHHHHHH
Q psy17575 560 EENIVNDWDDPRLFTLTALRRRG------------------------FPPEAINKFCARMGVTGAQAVVSPNMLEAV 612 (832)
Q Consensus 560 ~~g~v~gwdDPr~~tL~~lrrrG------------------------~~PeAI~nfl~~lG~s~~~~~~~~~~le~~ 612 (832)
.++..|.+.| +.++||+-|++.-. ..++..|+++.+.++
T Consensus 403 -------------v~l~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiRyf~L~~~-~~~~~~Fd~d~~~~~ 465 (592)
T 1iq0_A 403 -------------VSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTE-PKKQIDFRYQEALSF 465 (592)
T ss_dssp -------------CBHHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSC-TTSCEEECHHHHHCS
T ss_pred -------------cCHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHHHHHHhcC-CCCCCeecHHHHHHH
Confidence 2577777766 55666666666643 355666666666544
No 24
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=99.37 E-value=1.6e-12 Score=141.23 Aligned_cols=189 Identities=14% Similarity=0.064 Sum_probs=137.9
Q ss_pred HHHHHHhhhh-cCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccC-------CCcccccHHHHHHHHHH
Q psy17575 306 HDLLREHIKY-TGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDD-------TNPEKEEEKFFTGIKDM 377 (832)
Q Consensus 306 ~~~~~~hl~~-~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDD-------TDp~r~~~e~~~~I~ed 377 (832)
.+.|.+.|+. ..-.+.+.|. |||.|||||+ .++.+|...+..|+.+++.|-| +.+..+..++...|..+
T Consensus 20 ~~~l~~~l~~~~~~~vy~G~~--PTg~lHlG~l-~~l~~~~~lq~~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~ 96 (323)
T 2cyb_A 20 EEELRQLIETKEKPRAYVGYE--PSGEIHLGHM-MTVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKV 96 (323)
T ss_dssp HHHHHHHHHSCSCCEEEEEEC--CCSCCBHHHH-HHHHHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEECcC--CCCcchHHHH-HHHHHHHHHHHCCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHH
Confidence 5777888864 2334667785 6799999997 6799999999999999999966 32334667888999999
Q ss_pred HHHcCCCcCc--ccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCC
Q psy17575 378 VQWLGYKPYQ--ITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGE 455 (832)
Q Consensus 378 L~WLGl~pd~--~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~ 455 (832)
+.|+|++|++ +.+||+++.. -++++ ....|.|+||..++.+.... . |+.. +
T Consensus 97 ~~a~Gldp~k~~i~~qS~~~~~-~~~~~----~~~~l~~~~t~~~l~~~~~~--~------------------~~~~-~- 149 (323)
T 2cyb_A 97 FIALGLDESRAKFVLGSEYQLS-RDYVL----DVLKMARITTLNRARRSMDE--V------------------SRRK-E- 149 (323)
T ss_dssp HHHTTCCTTTCEEEEGGGTTTS-HHHHH----HHHHHHHHSBHHHHHHHTTT--T------------------CSCS-S-
T ss_pred HHHhCCCccceEEEEcchhccc-hHHHH----HHHHHhCccCHHHHhccchh--h------------------cccc-C-
Confidence 9999999985 5889997632 12222 22347799999998763110 0 0000 0
Q ss_pred ceEEEEecccCCCCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCC
Q psy17575 456 ATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCP 535 (832)
Q Consensus 456 ~~lR~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P 535 (832)
+ . ..| .-+|.+..+.|+.+.+++||++|.|...+......|.+.+|...|
T Consensus 150 --------------~---------~--~~g-----~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~~l~rdla~~~~~~~p 199 (323)
T 2cyb_A 150 --------------D---------P--MVS-----QMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRLGYSSP 199 (323)
T ss_dssp --------------S---------C--BTH-----HHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCCCC
T ss_pred --------------C---------C--Cch-----hhhhHHHHHHHHHhcCCCEEEechhhHHHHHHHHHHHHhcCCCCc
Confidence 0 0 011 337777778888889999999999999999999999999998888
Q ss_pred Cccccccc-CCCCcccchhH
Q psy17575 536 VQWEYGRL-NVNYTVVSKRK 554 (832)
Q Consensus 536 ~~~ef~hL-~l~gtkLSKRk 554 (832)
.......| .++|+||||+.
T Consensus 200 ~~l~~pll~~l~G~KMSKS~ 219 (323)
T 2cyb_A 200 VCLHTPILVGLDGQKMSSSK 219 (323)
T ss_dssp EEEEECCCBCTTSSBCCTTT
T ss_pred eEEecCcccCCCCCcccCCc
Confidence 64444444 45799999995
No 25
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=99.35 E-value=1.3e-12 Score=144.66 Aligned_cols=191 Identities=12% Similarity=0.120 Sum_probs=125.7
Q ss_pred HHHHHHhhhhcCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccC----CC-cc------cccHHHHHH-
Q psy17575 306 HDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDD----TN-PE------KEEEKFFTG- 373 (832)
Q Consensus 306 ~~~~~~hl~~~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDD----TD-p~------r~~~e~~~~- 373 (832)
.+.|.+.|+...-.|.++|. |||.|||||+..++.+|.+.+ .|+.++++|.| |+ |. +....+.+.
T Consensus 24 ~~~L~~~L~~~~~~vy~G~~--PTG~lHlG~~~~~l~~~~~~q-~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~~ 100 (372)
T 1n3l_A 24 EEKLKEILKERELKIYWGTA--TTGKPHVAYFVPMSKIADFLK-AGCEVTILFADLHAYLDNMKAPWELLELRVSYYENV 100 (372)
T ss_dssp HHHHHHHHTTSCCEEEEEEC--CSSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEeCcC--CCCcccHHHHHHHHHHHHHHH-CCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHHH
Confidence 56788888764456889999 679999999999999999987 79999999999 85 42 224445555
Q ss_pred HHHHHHHcCCCcCc--ccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcc
Q psy17575 374 IKDMVQWLGYKPYQ--ITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLI 451 (832)
Q Consensus 374 I~edL~WLGl~pd~--~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~ 451 (832)
|...+.|+|++|++ +..||++. .+-+++..++. |.|+||..++++....
T Consensus 101 i~~~lla~Gldp~k~~i~~qS~~~-~~~~~~~~~~~----l~~~~t~~~~~~~~~~------------------------ 151 (372)
T 1n3l_A 101 IKAMLESIGVPLEKLKFIKGTDYQ-LSKEYTLDVYR----LSSVVTQHDSKKAGAE------------------------ 151 (372)
T ss_dssp HHHHHHHHTCCCTTEEEEEGGGTT-TSHHHHHHHHH----HHTTSCHHHHHHHTTT------------------------
T ss_pred HHHHHHHcCCChhhcEEEECCeec-ccHHHHHHHHH----HHhhCcHHHHHhchhh------------------------
Confidence 55567999999984 78999973 12245555554 8899999888752100
Q ss_pred cCCCceEEEEecccCCCCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcC
Q psy17575 452 DEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALD 531 (832)
Q Consensus 452 ~~g~~~lR~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~ 531 (832)
+.|.+ .+.. .| . ..||..+ +.|=.+.+.+||++|.|...+.....-|+..+|
T Consensus 152 -----v~~~~-------~~~~-----------~g-~-~~YP~lQ---aaDil~~~a~~v~~G~DQ~~~~~l~rdl~~r~~ 203 (372)
T 1n3l_A 152 -----VVKQV-------EHPL-----------LS-G-LLYPGLQ---ALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALG 203 (372)
T ss_dssp -----TSCCC-------SSCC-----------HH-H-HHHHHHH---HHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGT
T ss_pred -----hhccc-------CCCc-----------ce-e-eecchHh---hccHHHhcCCEEEcChhHHHHHHHHHHHHHHcC
Confidence 00000 0000 01 0 1134322 233334688999999999999999999999999
Q ss_pred CCCCCccccccc-CCCCcccchhHHH
Q psy17575 532 IYCPVQWEYGRL-NVNYTVVSKRKIA 556 (832)
Q Consensus 532 ~~~P~~~ef~hL-~l~gtkLSKRk~~ 556 (832)
+..|.......| .++|+|||||..+
T Consensus 204 ~~~p~~l~~pll~gldG~KMSKS~~n 229 (372)
T 1n3l_A 204 YSKRVHLMNPMVPGLTGSKMSSSEEE 229 (372)
T ss_dssp CCCCEEEEECCCCCSSCC-------C
T ss_pred CCCCEEEecCccCCCCcccccCCCCC
Confidence 888854432222 3579999999864
No 26
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.34 E-value=5.5e-12 Score=144.85 Aligned_cols=278 Identities=15% Similarity=0.092 Sum_probs=160.4
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCC----------------cccccHHHHHHHHHHHHHc
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTN----------------PEKEEEKFFTGIKDMVQWL 381 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTD----------------p~r~~~e~~~~I~edL~WL 381 (832)
.++=-.|.|||.|||||+|++++...+||. ..|.-++++-++| |..-...+.+.|.+++++|
T Consensus 15 ~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 94 (524)
T 2x1l_A 15 YITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKL 94 (524)
T ss_dssp EEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 455667999999999999999999999985 6899999999988 3233457899999999999
Q ss_pred CCCcCcccccch--hHHHHHHHHHHHHHcCCcccc-----CCCHH-------HHhccC-CCCCCCCCC-ChhH-------
Q psy17575 382 GYKPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC-----HQKSD-------EMKGFN-PLPSPWRER-PVEE------- 438 (832)
Q Consensus 382 Gl~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C-----~Cs~e-------el~~~~-~~~~~~R~r-~~ee------- 438 (832)
|+.+|..+.+|+ +.+...+...+|.++|.+|.. +|... ++.... +..|+.|+. +++.
T Consensus 95 gi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~~~~~qwF 174 (524)
T 2x1l_A 95 NISFDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYF 174 (524)
T ss_dssp TCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEEEEEEEE
T ss_pred CCcCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceEEecCCeE
Confidence 999987666777 888888888999999999954 45432 111000 011221222 1110
Q ss_pred -hHHHHHHHHcCcccCCCceEE---EEe---cc-cCCCCCceEEEeee---CCCCCCCC-ceeEee-----ccceee---
Q psy17575 439 -NVKLFEAMKNGLIDEGEATLR---MKI---TL-EEGKQDPVAYRIKF---LPHHRTGD-SWCIYP-----TYDYTH--- 498 (832)
Q Consensus 439 -~L~~f~~m~~g~~~~g~~~lR---~K~---~~-~~~~~D~V~~Ri~~---~~h~r~gd-~~~i~P-----tY~fA~--- 498 (832)
.+..|.++....++++...+. .|- ++ ..+..|+.+-|... .|.| ++ +.++|- .+-|+.
T Consensus 175 ~~l~~~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP--~~~~~~~yvWfds~~~~~~~~g~ 252 (524)
T 2x1l_A 175 FRLSAYTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVP--DHPDHVMYVWVDALTNYLTGVGF 252 (524)
T ss_dssp ECGGGSHHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEET--TEEEEEECHHHHHHTHHHHTTTT
T ss_pred eeHHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCC--CCCCCEEEEecCCchHHHHHcCC
Confidence 000011100000000100000 000 00 11345666665311 0111 10 111100 000000
Q ss_pred eeec-----CCCCcceeeecccccccchh-HHHHHHhcCCCCCC-cccccccCCCCcccchhHHHHhhhcCccCCCCCcc
Q psy17575 499 CLCD-----SIEHITHSLCTKEFQSRRSS-YYWLCNALDIYCPV-QWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPR 571 (832)
Q Consensus 499 ~VdD-----~l~gITHvlRg~E~~~~~~~-~~~L~~aL~~~~P~-~~ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr 571 (832)
+-.+ ....++.-+-|.|+.--... ...+..++|+..|. .|..+++..+|.|||||+++ .
T Consensus 253 p~~~~~~~~~~~p~di~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~hG~v~~~G~KMSKS~GN------~-------- 318 (524)
T 2x1l_A 253 PDTESESFRRYWPADLHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAHGWLLNRGEKMSKSIGN------V-------- 318 (524)
T ss_dssp TCTTSHHHHHHCSCSEEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEEECSCSEETTTEE------S--------
T ss_pred CCCchHHHHhhCCCeEEEEeechhHhHHHHHHHHHHHCCCCCCcEEEECcEEEeCCcccCCcCCC------C--------
Confidence 0000 01134555568887632111 12344566877663 45568888899999999964 1
Q ss_pred hhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHH
Q psy17575 572 LFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVRE 615 (832)
Q Consensus 572 ~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~ 615 (832)
.++..+.+. |.++|++-|++..+-...+..|+++.+......
T Consensus 319 -v~p~d~i~~-~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~ 360 (524)
T 2x1l_A 319 -VDPVNLVDT-FGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNA 360 (524)
T ss_dssp -SCHHHHHHH-HCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHH
T ss_pred -CCHHHHHHH-cChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH
Confidence 245555553 889999999998776778899999998776543
No 27
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=99.29 E-value=4.1e-12 Score=146.54 Aligned_cols=282 Identities=15% Similarity=0.089 Sum_probs=144.9
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHh-----cCCEEEEeccCCCc-------------ccccHHHHHHHHHHHHHc
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAA-----HNGICFLRYDDTNP-------------EKEEEKFFTGIKDMVQWL 381 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~-----~gG~~iLRiDDTDp-------------~r~~~e~~~~I~edL~WL 381 (832)
++|.-.|.|||+|||||+|++++...+||- ++..++.-+||.+. ..-...+.+.|.+++++|
T Consensus 28 ~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 107 (536)
T 4dlp_A 28 YITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAEVL 107 (536)
T ss_dssp EEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 788989999999999999999998888873 44568888888654 334567899999999999
Q ss_pred CCCcCcccccch--hHHHHHHHHHHHHHcCCcccc-----CCCHHH-------Hhcc-CCCCCCCCCCChhHh-------
Q psy17575 382 GYKPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC-----HQKSDE-------MKGF-NPLPSPWRERPVEEN------- 439 (832)
Q Consensus 382 Gl~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C-----~Cs~ee-------l~~~-~~~~~~~R~r~~ee~------- 439 (832)
|+.+|..+..++ +.+...+...+|+++|.+|.+ +|...+ +..- .+..| +|+..+-+-
T Consensus 108 gi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c-~~~g~~~e~~~~~~~f 186 (536)
T 4dlp_A 108 NSSNDDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRY-GPQGTPVEWVEEESYF 186 (536)
T ss_dssp TCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTTSCEE-CTTSSBCEEEEEEEEE
T ss_pred CCCCCcceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCCCCcc-cCCCCcceEEeccceE
Confidence 999996544444 777788888899999999976 455432 2110 01101 111111000
Q ss_pred --HHHHHHHHcCcccCCCceE-----E--EEecccCCCCCceEEEeee---CCCCCCCCceeEeeccc-----eeee---
Q psy17575 440 --VKLFEAMKNGLIDEGEATL-----R--MKITLEEGKQDPVAYRIKF---LPHHRTGDSWCIYPTYD-----YTHC--- 499 (832)
Q Consensus 440 --L~~f~~m~~g~~~~g~~~l-----R--~K~~~~~~~~D~V~~Ri~~---~~h~r~gd~~~i~PtY~-----fA~~--- 499 (832)
+..|.+.....+++++..+ | +.--+..+..|+.+-|-.. .|-|-+. +-++|--++ ++..
T Consensus 187 ~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~~~-~~v~yvWfda~~~y~s~~~~~ 265 (536)
T 4dlp_A 187 FRLSAYQDKLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGDE-KHVMYVWVDALTNYITALGYP 265 (536)
T ss_dssp ECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTTCT-TSEECHHHHHHHHHHHTTTTT
T ss_pred EecHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCCCC-CCceEEeeCCcHHHHHhcCCC
Confidence 0001100000000010000 0 0000011235655555211 0111000 001100000 0000
Q ss_pred --eec--CCCCcceeeecccccccc-hhHHHHHHhcCCCCCCccc-ccccCCCCcccchhHHHHhhhcCccCCCCCcchh
Q psy17575 500 --LCD--SIEHITHSLCTKEFQSRR-SSYYWLCNALDIYCPVQWE-YGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLF 573 (832)
Q Consensus 500 --VdD--~l~gITHvlRg~E~~~~~-~~~~~L~~aL~~~~P~~~e-f~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~ 573 (832)
-.+ ......--+-|.|++... ..+..+..++|+..|...- .+++.++|.|||||+++- |
T Consensus 266 ~~~~~~~~~~p~dv~~~G~D~~~fh~~~~~a~l~a~g~~~~~~v~~hg~v~~~G~KMSKS~GNv------i--------- 330 (536)
T 4dlp_A 266 DTTDERWAYWPANAHIIGKDISRFHAVYWPAFLMSAQLPLPKRVFAHGFLFNRGEKMSKSVGNV------I--------- 330 (536)
T ss_dssp CTTSGGGGGCSCSEEEEEGGGHHHHHTHHHHHHHHTTCCCCSCEEEECCEEC------------------C---------
T ss_pred CCchHHHhhCCcceEEeechHHHHHHHHHHHHHHHCCCCCCcEEEeeeeEeeCCceecccCCCC------C---------
Confidence 000 000112234488877532 2233456678887665332 366777999999999752 1
Q ss_pred hHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHH-HHHhhcc
Q psy17575 574 TLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAV-VREVLND 619 (832)
Q Consensus 574 tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~-~r~~l~~ 619 (832)
++..+.+ .+.++|++-|++..+-...+..|+++.+... +.+..+.
T Consensus 331 ~p~d~i~-~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~ 376 (536)
T 4dlp_A 331 DPFELVE-RYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLAND 376 (536)
T ss_dssp CHHHHHH-HHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCC
T ss_pred CHHHHHH-HcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3444443 3679999999998765667889999887654 4444333
No 28
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.03 E-value=4.3e-10 Score=127.82 Aligned_cols=223 Identities=16% Similarity=0.129 Sum_probs=135.6
Q ss_pred CCceEEee-CCCCCCcCchHHHHHHHHHHHHHHhc--CCEEEEecc-------------------------CCC---ccc
Q psy17575 317 GGKVRTRF-PPEPNGILHIGHAKAININFGYAAAH--NGICFLRYD-------------------------DTN---PEK 365 (832)
Q Consensus 317 ~~~v~tRF-aPsPtG~LHIGharaaL~n~l~Ar~~--gG~~iLRiD-------------------------DTD---p~r 365 (832)
+.+|+.=| +|.|||+||+||+|++++...+||-. .|-=++|.= ..+ |+.
T Consensus 29 ~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~~~~p~~ 108 (464)
T 3fnr_A 29 QESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPEQ 108 (464)
T ss_dssp SCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCCCCSS
T ss_pred CCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCCCCCchh
Confidence 45789999 79999999999999999998888642 333333310 000 110
Q ss_pred c----------------------------------cHHHHHHHHHHHHHcCCCcCcccccchhHHHHHHHHHHHHHcCCc
Q psy17575 366 E----------------------------------EEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLA 411 (832)
Q Consensus 366 ~----------------------------------~~e~~~~I~edL~WLGl~pd~~~~qSd~~~~~ye~A~~Li~~G~A 411 (832)
. .....+.|.++++.||+..|....-|..+..+-+..++|.++|.+
T Consensus 109 ~y~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~fD~~~~Ess~~~~~~~vv~~L~~~g~~ 188 (464)
T 3fnr_A 109 YYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKIDSYVSERSYYDALNATLESLKEHKGI 188 (464)
T ss_dssp CCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCCSCEEEGGGGSTTHHHHHHHHHHTTCE
T ss_pred hcCccHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeecCHHHHHHHHHHHHHHHHHCCCE
Confidence 0 011233567777778877775433333333333445567777777
Q ss_pred cccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCCCCCceEEEeeeCCCCCCCCceeEe
Q psy17575 412 YVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIY 491 (832)
Q Consensus 412 Y~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~~i~ 491 (832)
|.. +|..+ ++.+......|.|+-| ++| .
T Consensus 189 ~e~--------------------------------------dGa~~--~~~~~~g~~~~~vl~k-------sDG-----~ 216 (464)
T 3fnr_A 189 YEQ--------------------------------------EGKIW--LASSQKGDEKDRVIIR-------EDG-----R 216 (464)
T ss_dssp EEE--------------------------------------TTEEE--ECGGGGTCSSCEEEEC-------TTS-----C
T ss_pred EEe--------------------------------------CCeEE--EEecccCCCCceEEEe-------CCC-----c
Confidence 742 12111 2221111113555554 344 4
Q ss_pred eccc---eeeeeecCCCCccee--eecccccccchhHHHHHHhcCCCCCCccccccc-----CC--CCc--ccchhHHHH
Q psy17575 492 PTYD---YTHCLCDSIEHITHS--LCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRL-----NV--NYT--VVSKRKIAK 557 (832)
Q Consensus 492 PtY~---fA~~VdD~l~gITHv--lRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL-----~l--~gt--kLSKRk~~~ 557 (832)
|||. +|..+++..++++++ |+|.|+....+++..+++++|+.+| .+.|+ ++ +|. |||||+++.
T Consensus 217 ~~Y~t~DiA~~~~r~~~~~d~~Iyv~G~dq~~~f~~l~~~l~~lG~~~~---~~~h~~~g~V~l~~dG~~~KMSKr~Gn~ 293 (464)
T 3fnr_A 217 GTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFLGFDSN---NLEIILAQMVSLLKDGEPYKMSKRAGNF 293 (464)
T ss_dssp BCHHHHHHHHHHHHHTSSCSEEEEEEEGGGGGGHHHHHHHHHTTTCCGG---GEEEEEECCEEEEETTEECCC---CCSS
T ss_pred eehhhHHHHHHHHHHHcCCCeEEEEecCcHHHHHHHHHHHHHHcCCCcc---ceEEEEeeeEEecCCCcccCCcCcCCCC
Confidence 5665 888999999999999 5899999988888889999998755 23343 34 674 999998531
Q ss_pred hhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHH
Q psy17575 558 LIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEA 611 (832)
Q Consensus 558 lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~ 611 (832)
.++..+.+. +.++|++-|+..-. ..++..|+++.+.+
T Consensus 294 ---------------v~l~dll~~-~g~dalRy~~l~~~-~~~d~~Fd~~~~~~ 330 (464)
T 3fnr_A 294 ---------------ILMSDVVDE-IGSDALRYIFLSKK-CDTHLEFDISDLQK 330 (464)
T ss_dssp ---------------CBHHHHHHH-HCHHHHHHHTTSSC-TTSCEEEEGGGGGC
T ss_pred ---------------CCHHHHHhh-ccHHHHHHHHHhcC-CCCCCccCHHHHHH
Confidence 245555543 55888887776542 45566777766544
No 29
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=98.93 E-value=9.1e-10 Score=127.93 Aligned_cols=96 Identities=17% Similarity=0.060 Sum_probs=76.3
Q ss_pred ceEEeeCCCCCCcCchHHHHHHHHHHHHHH-----hcCCEEEEeccCCCcc-------------cccHHHHHHHHHHHHH
Q psy17575 319 KVRTRFPPEPNGILHIGHAKAININFGYAA-----AHNGICFLRYDDTNPE-------------KEEEKFFTGIKDMVQW 380 (832)
Q Consensus 319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar-----~~gG~~iLRiDDTDp~-------------r~~~e~~~~I~edL~W 380 (832)
-++|--.|.|||++||||+|++++...+|| .+.-.++.-+||.+.+ .-...+.+.|.+++++
T Consensus 28 ~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~~~~~~ 107 (564)
T 3kfl_A 28 FFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQE 107 (564)
T ss_dssp EEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 377888899999999999999999887777 3556777778877643 2245788899999999
Q ss_pred cCCCcCcccccc--hhHHHHHHHHHHHHHcCCcccc
Q psy17575 381 LGYKPYQITHSS--DYFHQLYEWAVKLIKKGLAYVC 414 (832)
Q Consensus 381 LGl~pd~~~~qS--d~~~~~ye~A~~Li~~G~AY~C 414 (832)
||+.+|.....+ .+.+...+...+|.++|.+|..
T Consensus 108 lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~ 143 (564)
T 3kfl_A 108 MNYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLG 143 (564)
T ss_dssp TTCCCSEEEETTSHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred cCCCCCccccCCCHHHHHHHHHHHHHHHHCCCEEEe
Confidence 999999643444 4666677778899999999865
No 30
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=98.82 E-value=2.7e-09 Score=124.91 Aligned_cols=189 Identities=17% Similarity=0.155 Sum_probs=119.5
Q ss_pred CCceEEee-CCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEe---ccC------------------------------
Q psy17575 317 GGKVRTRF-PPEPNGILHIGHAKAININFGYAAA--HNGICFLR---YDD------------------------------ 360 (832)
Q Consensus 317 ~~~v~tRF-aPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLR---iDD------------------------------ 360 (832)
+++|+.=| .|.|+|+|||||+|++++-..+||- +-|-=+.| |.|
T Consensus 142 ~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l~ 221 (607)
T 1f7u_A 142 NKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHLF 221 (607)
T ss_dssp CCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHHH
T ss_pred CCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHHH
Confidence 34676666 8999999999999999987766664 34444444 333
Q ss_pred ------------------------------------CCcc------cccHHHHHHHHHHHHHcCCCcCcccccchhH-HH
Q psy17575 361 ------------------------------------TNPE------KEEEKFFTGIKDMVQWLGYKPYQITHSSDYF-HQ 397 (832)
Q Consensus 361 ------------------------------------TDp~------r~~~e~~~~I~edL~WLGl~pd~~~~qSd~~-~~ 397 (832)
-|++ .-...+.+.+.++++.||+..|.....|++. +.
T Consensus 222 ~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~ES~~~~~~ 301 (607)
T 1f7u_A 222 DVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKES 301 (607)
T ss_dssp HHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGCCHHH
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCcchhhhhH
Confidence 1110 1134567788999999999998666667776 56
Q ss_pred HHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCCCCC-ceEEEe
Q psy17575 398 LYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQD-PVAYRI 476 (832)
Q Consensus 398 ~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~~~D-~V~~Ri 476 (832)
+-+..+.|.++|.+|... |..+++ ++......| .|+.|
T Consensus 302 ~~~vi~~L~~kG~~ye~d--------------------------------------Ga~~~~--~~~~g~~~d~~v~~K- 340 (607)
T 1f7u_A 302 MLKAIDLFKEKGLTHEDK--------------------------------------GAVLID--LTKFNKKLGKAIVQK- 340 (607)
T ss_dssp HHHHHHHHHHTTCEEEET--------------------------------------TEEEEE--GGGTCTTTCEEEEEC-
T ss_pred HHHHHHHHHhCCCEEEEC--------------------------------------CcEEEE--ecccCCCCCceeEec-
Confidence 667778899999999621 111111 000000112 23322
Q ss_pred eeCCCCCCCCceeEeeccceeeeeecC-CCCcceee--ecccccccchhHHHHHHhcCCCCCCcccccccCC-CCcccch
Q psy17575 477 KFLPHHRTGDSWCIYPTYDYTHCLCDS-IEHITHSL--CTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNV-NYTVVSK 552 (832)
Q Consensus 477 ~~~~h~r~gd~~~i~PtY~fA~~VdD~-l~gITHvl--Rg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~l-~gtkLSK 552 (832)
++|.- .|-|=|+|..++.. .++.+++| .|.++...-++...+.++||+..+.. +.|+++ .-.+|||
T Consensus 341 ------sDG~~--~Y~t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~~~~~~~lG~~~~~~--~~Hv~fg~v~kMSk 410 (607)
T 1f7u_A 341 ------SDGTT--LYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFEWAKD--LQHVNFGMVQGMST 410 (607)
T ss_dssp ------TTSCC--CHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTTCGGGGG--EEEECCCCEESCCG
T ss_pred ------cCCCc--CCCCCcHHHHHHHHhhcCCCcEEEEEcChHhhHHHHHHHHHHHcCCCcCcE--EEEecccccccccC
Confidence 23321 13344556666555 35788888 89999877777778888999865543 457666 2237999
Q ss_pred hHHH
Q psy17575 553 RKIA 556 (832)
Q Consensus 553 Rk~~ 556 (832)
|.+.
T Consensus 411 R~G~ 414 (607)
T 1f7u_A 411 RKGT 414 (607)
T ss_dssp GGTC
T ss_pred CCCC
Confidence 9864
No 31
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=98.71 E-value=8.8e-09 Score=121.17 Aligned_cols=47 Identities=19% Similarity=-0.009 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHcCCCcCcccccchh--HHHHHHHHHHHHHcCCcccc
Q psy17575 368 EKFFTGIKDMVQWLGYKPYQITHSSDY--FHQLYEWAVKLIKKGLAYVC 414 (832)
Q Consensus 368 ~e~~~~I~edL~WLGl~pd~~~~qSd~--~~~~ye~A~~Li~~G~AY~C 414 (832)
..+.+.+.++++.||+.+|.....|++ .+...+..++|.++|.+|.|
T Consensus 247 ~~~~~~f~~~~~~L~I~~D~~~~es~~~~~~~v~~vi~~L~~kG~~y~~ 295 (629)
T 2zue_A 247 EEVVRAQMVTTYKLGVKYDLLVWESDIVRRKLFEIALELLSKNENFYIP 295 (629)
T ss_dssp HHHHHHHHHHHHHHTCCCSEEEEHHHHHHTTHHHHHHHHHHTSTTEECC
T ss_pred HHHHHHHHHHHHHcCCccccccCcCccccchhHHHHHHHHHHCCCcccc
Confidence 356678899999999999876677776 34556777889999999965
No 32
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=98.65 E-value=2e-08 Score=115.60 Aligned_cols=94 Identities=18% Similarity=0.067 Sum_probs=69.3
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCc----------------ccccHHHHHHHHHHHHHc
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNP----------------EKEEEKFFTGIKDMVQWL 381 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp----------------~r~~~e~~~~I~edL~WL 381 (832)
++|==.|-|||.||||||++.++--.+||. ..|.=++.+-+||. ..-..+|.+.|.+++++|
T Consensus 12 ~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~~~l 91 (542)
T 3u1f_A 12 FVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCFEQM 91 (542)
T ss_dssp EEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 444445899999999999999998888874 45666666677764 112357889999999999
Q ss_pred CCCcCcccccc--hhHHHHHHHHHHHHHcCCccc
Q psy17575 382 GYKPYQITHSS--DYFHQLYEWAVKLIKKGLAYV 413 (832)
Q Consensus 382 Gl~pd~~~~qS--d~~~~~ye~A~~Li~~G~AY~ 413 (832)
|+.+|..+..+ .+.....+...+|.++|.+|.
T Consensus 92 gi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 125 (542)
T 3u1f_A 92 DYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYL 125 (542)
T ss_dssp TCCCSEEEETTCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCccCcCccCCCHHHHHHHHHHHHHHhhcCcEEe
Confidence 99888533333 344444556678999999986
No 33
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=98.64 E-value=9.4e-08 Score=114.16 Aligned_cols=94 Identities=17% Similarity=0.120 Sum_probs=68.4
Q ss_pred eEEeeCCCCCCcCchHHHHH-HHHHHHHHHh--cCC---EEEEeccCCCcc-------------cccHHHHHHHHHHHHH
Q psy17575 320 VRTRFPPEPNGILHIGHAKA-ININFGYAAA--HNG---ICFLRYDDTNPE-------------KEEEKFFTGIKDMVQW 380 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGhara-aL~n~l~Ar~--~gG---~~iLRiDDTDp~-------------r~~~e~~~~I~edL~W 380 (832)
++|==+|.|||.+||||+++ .++-..+||. ..| .|+.=+|+.+.+ .-..++.+.+.+++++
T Consensus 5 ~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~~~ 84 (722)
T 1rqg_A 5 MVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQR 84 (722)
T ss_dssp EEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 45556799999999999998 7777666653 334 455556665433 2245788999999999
Q ss_pred cCCCcCcccccch--hHHHHHHHHHHHHHcCCccc
Q psy17575 381 LGYKPYQITHSSD--YFHQLYEWAVKLIKKGLAYV 413 (832)
Q Consensus 381 LGl~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~ 413 (832)
||+.+|..+..++ |.....+...+|.++|.+|.
T Consensus 85 lgis~D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~ 119 (722)
T 1rqg_A 85 AKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVK 119 (722)
T ss_dssp HTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hCCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 9999886544443 55555566778999999985
No 34
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=98.54 E-value=1.9e-07 Score=103.24 Aligned_cols=192 Identities=13% Similarity=0.030 Sum_probs=127.5
Q ss_pred cHHHHHHhhhh-cCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccC----CCc-c-c---ccHHHHHHH
Q psy17575 305 THDLLREHIKY-TGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDD----TNP-E-K---EEEKFFTGI 374 (832)
Q Consensus 305 ~~~~~~~hl~~-~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDD----TDp-~-r---~~~e~~~~I 374 (832)
+.+.|++.|+. ..-.+.+-|.| ||.||||| ..++.+|..-+..|..+++.|-| |++ . + ...++...+
T Consensus 22 ~~~~L~~~l~~~~~~~iy~G~~P--Tg~lHlG~-l~~l~~~~~lQ~~G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~ 98 (364)
T 2cya_A 22 TEEELKGLLASGARIKGYIGYEP--SGVAHIGW-LVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIV 98 (364)
T ss_dssp THHHHHHHHHHCSCCEEEEEECC--CSSCBTHH-HHHHHHHHHHHHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCEEEeccCC--CCCccHhH-HHHHHHHHHHHHCCCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHH
Confidence 36778888865 23457788976 59999999 89999999999999999999999 333 1 3 344666788
Q ss_pred HHHHHHcCCCcCc--ccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCccc
Q psy17575 375 KDMVQWLGYKPYQ--ITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLID 452 (832)
Q Consensus 375 ~edL~WLGl~pd~--~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~ 452 (832)
..++.++|++|++ +..||+.... ..+...++ -+.|++|-.++.+.... ..|. .
T Consensus 99 ~~~~la~G~dp~k~~i~~qS~~~~~-~~~~~~~~----~l~~~~t~~~l~r~~~~----k~r~----------------~ 153 (364)
T 2cya_A 99 RRVMEAAGVPVERVRFVDAEELASD-KDYWGLVI----RVAKRASLARVRRALTI----MGRR----------------A 153 (364)
T ss_dssp HHHHHHTTCCGGGCEEEEHHHHHTC-HHHHHHHH----HHHHTSCHHHHHTTC--------------------------C
T ss_pred HHHHHHhCCCccceEEEecchhhcc-hHHHHHHH----HHHCcCcHHHHHcCchh----hhhh----------------c
Confidence 8999999999985 6889987643 23333333 35699999998864211 0000 0
Q ss_pred CCCceEEEEecccCCCCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCC
Q psy17575 453 EGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDI 532 (832)
Q Consensus 453 ~g~~~lR~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~ 532 (832)
.+. + + +. ....||..+ +.|=.+.+.+|++.|.|-..+.....-+...+|.
T Consensus 154 ~~~-----------~--------i-------~~-g~~~YP~LQ---aaDil~~~~~~v~~G~DQ~~~~~l~rdla~r~~~ 203 (364)
T 2cya_A 154 EEA-----------E--------V-------DA-SKLIYPLMQ---VSDIFYMDLDIALGGMDQRKAHMLARDVAEKLGR 203 (364)
T ss_dssp CGG-----------G--------S-------CT-HHHHHHHHH---HHHHHHTTCSEEEEEGGGHHHHHHHHHHHTTTTC
T ss_pred CCC-----------C--------c-------cc-hhhhhHHHH---HhhHHhcCCCEEeccchHHHHHHHHHHHHHHcCC
Confidence 000 0 0 00 011244322 2222246899999999998888888888899998
Q ss_pred CCCCccccccc-CCC-----------------CcccchhH
Q psy17575 533 YCPVQWEYGRL-NVN-----------------YTVVSKRK 554 (832)
Q Consensus 533 ~~P~~~ef~hL-~l~-----------------gtkLSKRk 554 (832)
..|.......| .++ |+||||+.
T Consensus 204 ~~p~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~ 243 (364)
T 2cya_A 204 KKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSK 243 (364)
T ss_dssp CCCEEEEECCCBCSSCC----------------CBCCSSS
T ss_pred CCceeeccceeeCCCcccccccccccccccccccccCCCC
Confidence 88865443333 345 68999995
No 35
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=98.47 E-value=1.9e-07 Score=101.15 Aligned_cols=110 Identities=16% Similarity=0.157 Sum_probs=83.1
Q ss_pred HHHHHHhhhhcCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccC-C---C---cccccHHHHHHHHHHH
Q psy17575 306 HDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDD-T---N---PEKEEEKFFTGIKDMV 378 (832)
Q Consensus 306 ~~~~~~hl~~~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDD-T---D---p~r~~~e~~~~I~edL 378 (832)
.+.|.+.|+...-.+.+.|.| ||.||||| ..++.||...+..|..+++.|-| | + ...+..++...|..++
T Consensus 17 ~~~l~~~L~~~~~~vy~G~~P--Tg~lHlGh-l~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~ 93 (314)
T 2zp1_A 17 EEELREVLKKDEKSAYIGFEP--SGKIHLGH-YLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVF 93 (314)
T ss_dssp HHHHHHHHTSSSEEEEEEECC--CSSCBHHH-HHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEEccCC--CCCcchhh-HHHHHHHHHHHHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHH
Confidence 566777787333357899998 58999999 99999999999999999999944 3 2 2245567788999999
Q ss_pred HHcCCCcCcccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhcc
Q psy17575 379 QWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGF 424 (832)
Q Consensus 379 ~WLGl~pd~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~ 424 (832)
.++|++ ....+||+.+.. .++...|+ .+.|++|..++.+.
T Consensus 94 ~a~G~d-~~~~~qs~~~~~-~~~~~~~~----~l~~~~t~~~l~~~ 133 (314)
T 2zp1_A 94 EAMGLK-AKYVYGSEFQLD-KDYTLNVY----RLALKTTLKRARRS 133 (314)
T ss_dssp HHTTCC-CEEEEGGGTTTS-HHHHHHHH----HHHHHSCHHHHHHH
T ss_pred HhcCCC-eEEEECChhhcc-hHHHHHHH----HHHCcCcHHHHhcc
Confidence 999998 667779998643 23333333 45699999988864
No 36
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=98.43 E-value=1.1e-06 Score=96.34 Aligned_cols=179 Identities=16% Similarity=0.119 Sum_probs=113.0
Q ss_pred EeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccC----C----CcccccHHHHHHHHHHHHHcCCCcC--ccccc
Q psy17575 322 TRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDD----T----NPEKEEEKFFTGIKDMVQWLGYKPY--QITHS 391 (832)
Q Consensus 322 tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDD----T----Dp~r~~~e~~~~I~edL~WLGl~pd--~~~~q 391 (832)
......|||.|||||...++.||...+..|..+++.|-| | ||+. ..+....+..++.++|++|+ .+..|
T Consensus 15 v~~G~~PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~~-~~~~~~~~~~~~lA~Gldp~k~~if~q 93 (340)
T 2g36_A 15 ILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSK-LKEYTRDLVRGFLACGIDPEKSVIFVQ 93 (340)
T ss_dssp EEEEECCCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTT-HHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred EEEeeCCCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHHH-HHHHHHHHHHHHHHhCCChhHeEEEEC
Confidence 444455679999999998888999889999999999999 6 6664 55667777788999999998 57889
Q ss_pred chhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCCCCCc
Q psy17575 392 SDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDP 471 (832)
Q Consensus 392 Sd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~~~D~ 471 (832)
|+..+ +.+.+. .+.|+++-.++.+... |.+. .-|++- .++
T Consensus 94 S~~~~-~~el~~-------~l~~~~~v~~l~r~~~----------------~k~~----------~~r~~~--~~~---- 133 (340)
T 2g36_A 94 SGVKE-HAELAL-------LFSMIVSVSRLERVPT----------------YKEI----------KSELNY--KDL---- 133 (340)
T ss_dssp GGCTH-HHHHHH-------HHHTTSCHHHHHTCHH----------------HHTC-------------------CC----
T ss_pred CchHH-HHHHHH-------HHHccCCHHHHHHhHH----------------HHhH----------HHHhcc--CCC----
Confidence 99754 444332 3559999888874310 0000 000000 000
Q ss_pred eEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcC------CCCCC--ccccccc
Q psy17575 472 VAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALD------IYCPV--QWEYGRL 543 (832)
Q Consensus 472 V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~------~~~P~--~~ef~hL 543 (832)
+ ..| ...||..+ +.|=.+.+.++|+.|.|-..+.....-|...++ +..|. .-+...|
T Consensus 134 ----~------~~g--~f~YPvLQ---AaDil~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l 198 (340)
T 2g36_A 134 ----S------TAG--FLIYPVLQ---AADILIYKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEPEAILSRVPKL 198 (340)
T ss_dssp ----C------SHH--HHTHHHHH---HHHHHTTTCSEEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCCEEEECCSCCC
T ss_pred ----C------ChH--HhhhHHHH---HhhHHHhCCCEEEcccchHHHHHHHHHHHHHhhhhcccccCCchhhhcccccc
Confidence 0 000 01144432 222224689999999999877766666777664 22342 1112233
Q ss_pred -CCCCcccchhHHH
Q psy17575 544 -NVNYTVVSKRKIA 556 (832)
Q Consensus 544 -~l~gtkLSKRk~~ 556 (832)
.++|+||||+..+
T Consensus 199 ~gldG~KMSKS~~n 212 (340)
T 2g36_A 199 PGTDGRKMSKSYGN 212 (340)
T ss_dssp CCTTSSCCCGGGTC
T ss_pred CCCCccccCCCCCC
Confidence 3579999999753
No 37
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=98.26 E-value=1.4e-06 Score=95.11 Aligned_cols=176 Identities=15% Similarity=0.124 Sum_probs=111.9
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccC----CCccc--ccHHHHHHHHHHHHHcCCCcC--ccccc
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDD----TNPEK--EEEKFFTGIKDMVQWLGYKPY--QITHS 391 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDD----TDp~r--~~~e~~~~I~edL~WLGl~pd--~~~~q 391 (832)
+.+=|- |||.|||||...++.||...+. |..+++.|-| |+|.. +..+....+..++.++|++|+ .+.+|
T Consensus 4 vysG~~--PTG~lHlGn~vg~l~~~~~lQ~-g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~if~q 80 (328)
T 1i6k_A 4 IFSGIQ--PSGVITIGNYIGALRQFVELQH-EYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQ 80 (328)
T ss_dssp EEEEEC--CCSCCBHHHHHHTHHHHHHHTT-TSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEG
T ss_pred EEEeeC--CCCcccHHHHHHHHHHHHHHHc-CCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEec
Confidence 334444 5699999999999999987755 8999999999 85321 345667788899999999998 57889
Q ss_pred chhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCCCCCc
Q psy17575 392 SDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDP 471 (832)
Q Consensus 392 Sd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~~~D~ 471 (832)
|++.+ +.+.+-.| .|.++-.++.++. .|.+..... ++. +
T Consensus 81 S~~~~-~~~l~w~l-------~~~~~~~~l~r~~----------------~~k~~~~~~--~~~-------~-------- 119 (328)
T 1i6k_A 81 SEVPA-HAQAAWML-------QCIVYIGELERMT----------------QFKEKSAGK--EAV-------S-------- 119 (328)
T ss_dssp GGCTH-HHHHHHHH-------HHHSCHHHHHTCH----------------HHHHHHTTC--SSC-------C--------
T ss_pred Cchhh-hhHHHHHH-------hccccHHHHHHHH----------------HHHHHHhcc--CCC-------C--------
Confidence 99754 45544433 3788877776431 122221100 000 0
Q ss_pred eEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcC------CCCCCccc---ccc
Q psy17575 472 VAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALD------IYCPVQWE---YGR 542 (832)
Q Consensus 472 V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~------~~~P~~~e---f~h 542 (832)
.| ...||..+= .|=.+.+.++|+.|.|-..+.....-|...+| +..|...- -..
T Consensus 120 ------------~g--~f~YPvLQa---aDil~~~~~~vpvG~DQ~~~iel~Rdia~r~n~~yg~~f~~P~~li~~~~~~ 182 (328)
T 1i6k_A 120 ------------AG--LLTYPPLMA---ADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGAR 182 (328)
T ss_dssp ------------HH--HHTHHHHHH---HHHHTTTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCCCCCEEECCSSSSS
T ss_pred ------------ch--hhccHHHHH---HHHHHhCCCEEecccchHHHHHHHHHHHHHhCcccccccCCCeeeecccccc
Confidence 00 011443332 22233689999999999887777777777766 23442111 122
Q ss_pred c-CCCC--cccchhHHH
Q psy17575 543 L-NVNY--TVVSKRKIA 556 (832)
Q Consensus 543 L-~l~g--tkLSKRk~~ 556 (832)
| .++| +||||+..+
T Consensus 183 l~gl~G~~~KMSKS~~n 199 (328)
T 1i6k_A 183 IMSLVDPTKKMSKSDPN 199 (328)
T ss_dssp CBCSSCTTSBCCTTCSC
T ss_pred ccCCCCCccCCCCCCCC
Confidence 2 4678 899999865
No 38
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=98.24 E-value=4.2e-07 Score=99.83 Aligned_cols=182 Identities=14% Similarity=0.089 Sum_probs=113.4
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccC-------CCcccccHHHHHHHHHHHHHcCCCcC--cccc
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDD-------TNPEKEEEKFFTGIKDMVQWLGYKPY--QITH 390 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDD-------TDp~r~~~e~~~~I~edL~WLGl~pd--~~~~ 390 (832)
+.+=|- |||.|||||...++.||...+. |..+++.|-| .||+ +..+....+..++.++|++|+ .+.+
T Consensus 7 i~sG~~--PTG~lHLGn~vg~l~~~~~lQ~-~~~~~~~IaD~ha~~~~~d~~-~i~~~~~~~~~~~lA~Gldp~k~~if~ 82 (348)
T 2yy5_A 7 ALTGIQ--ASGKQHLGNYLGVMQSLIELQE-QCQLFVFVADLHSITVDFQPQ-ALKQNNFDLVRTLLAVGLDPQKACLFL 82 (348)
T ss_dssp EEEEEC--CCTTCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCHH-HHHHHHHHHHHHHHHTTCCTTTEEEEE
T ss_pred EEEeeC--CCCcccHHHHHHHHHHHHHHHh-CCcEEEEEcChhhccCCCCHH-HHHHHHHHHHHHHHHhCCChhHeEEEE
Confidence 445555 5599999999999999987776 8899999999 6775 445667778889999999998 5788
Q ss_pred cchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCCCCC
Q psy17575 391 SSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQD 470 (832)
Q Consensus 391 qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~~~D 470 (832)
||+..+ +.+..-.| .|.++..++.++.. |.+.. ++ .+ + +..+ .|
T Consensus 83 qS~~~~-~~el~w~l-------~~~~~~~~l~R~~~----------------~k~~~-~~--~~-----~--~~~~--~~ 126 (348)
T 2yy5_A 83 QSDLLE-HSMMGYLM-------MVQSNLGELQRMTQ----------------FKAKK-AE--QT-----R--NPNG--TL 126 (348)
T ss_dssp GGGCHH-HHHHHHHH-------HHHSBHHHHHHCHH----------------HHTTC-----------------------
T ss_pred CCcccc-hhHHHHHH-------HhhccHHHHhchHH----------------HHHHH-Hh--hc-----c--cccc--CC
Confidence 999865 44443333 48888888775411 00000 00 00 0 0000 00
Q ss_pred ceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcC------CCCCCccc---cc
Q psy17575 471 PVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALD------IYCPVQWE---YG 541 (832)
Q Consensus 471 ~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~------~~~P~~~e---f~ 541 (832)
. + ..| ...||..+=| |=.+.+.+||+.|.|-..+.....-+...++ +..|.... -.
T Consensus 127 ~----~------~~g--~~~YPvLQaa---Dil~~~a~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P~~l~~~~~~ 191 (348)
T 2yy5_A 127 N----I------PTG--LLTYPALMAG---DILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLPQFVQNKDTN 191 (348)
T ss_dssp C----C------BTH--HHHHHHHHHH---HHHTTCCSEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCCEEECCTTTT
T ss_pred C----C------Chh--hhhhHHHHHH---HHHHhCccEEEecccHHHHHHHHHHHHHHhhhhcccccCCCeeecccccc
Confidence 0 0 001 1125544432 2234689999999999887777677777764 33453222 12
Q ss_pred cc-CCCC--cccchhHHH
Q psy17575 542 RL-NVNY--TVVSKRKIA 556 (832)
Q Consensus 542 hL-~l~g--tkLSKRk~~ 556 (832)
+| .++| +||||+..+
T Consensus 192 ~l~gL~g~~~KMSKS~~n 209 (348)
T 2yy5_A 192 RIMDLFDPTKKMSKSSKN 209 (348)
T ss_dssp TCBCSSCTTSBCCSSCSC
T ss_pred cccCCCCcchhcCCCCCC
Confidence 23 4567 899999865
No 39
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=98.07 E-value=5.4e-06 Score=90.70 Aligned_cols=88 Identities=15% Similarity=0.069 Sum_probs=67.1
Q ss_pred CCCcCchHHHHHHHHHHHHHHhcC-CEEEEeccC----CC---ccc-ccHHHHHHHHHHHHHcCCCcC--cccccchhHH
Q psy17575 328 PNGILHIGHAKAININFGYAAAHN-GICFLRYDD----TN---PEK-EEEKFFTGIKDMVQWLGYKPY--QITHSSDYFH 396 (832)
Q Consensus 328 PtG~LHIGharaaL~n~l~Ar~~g-G~~iLRiDD----TD---p~r-~~~e~~~~I~edL~WLGl~pd--~~~~qSd~~~ 396 (832)
|||.|||||...++.||..-+..| ..+++.|-| |+ |.. ...+....+..++.++|++|+ .+..||+..+
T Consensus 10 PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i~~qS~~~~ 89 (337)
T 2el7_A 10 PSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTLFVQSHVPE 89 (337)
T ss_dssp SCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEEEEGGGSTH
T ss_pred CCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEEEEcCcchh
Confidence 569999999998889998877777 788999988 32 221 345667778889999999998 5789999764
Q ss_pred HHHHHHHHHHHcCCccccCCCHHHHhc
Q psy17575 397 QLYEWAVKLIKKGLAYVCHQKSDEMKG 423 (832)
Q Consensus 397 ~~ye~A~~Li~~G~AY~C~Cs~eel~~ 423 (832)
+.+.+. .+.|+++-.+|.+
T Consensus 90 -~~el~~-------~l~~~~~~~~l~r 108 (337)
T 2el7_A 90 -HTELSW-------VFTTLTPLGDLTR 108 (337)
T ss_dssp -HHHHHH-------HHHHTSBHHHHHT
T ss_pred -hHHHHH-------HHHccCCHHHHHH
Confidence 444433 2669998888874
No 40
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=98.04 E-value=4.2e-06 Score=92.02 Aligned_cols=180 Identities=16% Similarity=0.085 Sum_probs=111.0
Q ss_pred CceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcc------cccHHHHHHHHHHHHHcCCCcC--ccc
Q psy17575 318 GKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPE------KEEEKFFTGIKDMVQWLGYKPY--QIT 389 (832)
Q Consensus 318 ~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~------r~~~e~~~~I~edL~WLGl~pd--~~~ 389 (832)
-.+.+.|.| ||.|||||...++.||...+.....+++.-|+|.-. .+..+....|..++.++|++|+ .+.
T Consensus 23 ~~vysG~~P--TG~lHLGn~~g~l~~~~~lQ~~~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i~ 100 (351)
T 1yi8_B 23 PRVLTGDRP--TGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTTCV 100 (351)
T ss_dssp SEEEEEECC--SSCCBHHHHHHTHHHHHHHTSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTTEEEE
T ss_pred cEEEEeeCC--CCCccHHHHHHHHHHHHHHHHhCCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEE
Confidence 357889998 599999999988999976665555666666654221 1345666778889999999998 567
Q ss_pred ccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHc--CcccCCCceEEEEecccCC
Q psy17575 390 HSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKN--GLIDEGEATLRMKITLEEG 467 (832)
Q Consensus 390 ~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~--g~~~~g~~~lR~K~~~~~~ 467 (832)
.||+... +.+++ ..|.|+++-.+|.+. -+ |.++.. |. .++. +
T Consensus 101 ~qS~~~~-~~el~-------~~l~~~~~v~~l~r~---------~~-------~k~~~~~~~f-~~~~-------~---- 144 (351)
T 1yi8_B 101 VQSAVPE-LAELT-------VYFLNLVTVSHLRQN---------PT-------VKAEIAQKGY-GERV-------P---- 144 (351)
T ss_dssp EGGGCTH-HHHHH-------HHHHTTSBHHHHHTC---------HH-------HHHHHHHHTC-TTCC-------B----
T ss_pred EcCchhh-HHHHH-------HHHhccCCHHHHHhh---------hH-------HHHHHhhcCC-CCCC-------c----
Confidence 8999764 33332 246699999988742 11 111111 10 0000 0
Q ss_pred CCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcC------CCCCCc-c-c
Q psy17575 468 KQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALD------IYCPVQ-W-E 539 (832)
Q Consensus 468 ~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~------~~~P~~-~-e 539 (832)
.| ...||..+ +.|=.+.+.++|+.|.|...+.....-|.+.++ +..|.. . +
T Consensus 145 ----------------~g--~f~YPvLQ---AaDil~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~ 203 (351)
T 1yi8_B 145 ----------------AG--FFVYPVSQ---AADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQLSR 203 (351)
T ss_dssp ----------------HH--HHHHHHHH---HHHHHHHTCSEEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCCEEEECS
T ss_pred ----------------hH--hhhhHHHH---HhhHHhcCCCEEEecCCcHHHHHHHHHHHHHHHhhcccccCCCeeeeec
Confidence 00 01133322 222223689999999999887777777776653 234421 1 1
Q ss_pred cccc-CCCCc-ccchhHHH
Q psy17575 540 YGRL-NVNYT-VVSKRKIA 556 (832)
Q Consensus 540 f~hL-~l~gt-kLSKRk~~ 556 (832)
...| .++|+ ||||+..+
T Consensus 204 ~~~l~~ldG~~KMSKS~~n 222 (351)
T 1yi8_B 204 VPRLPGLDGQAKMSKSLGN 222 (351)
T ss_dssp SCSCCCTTSSSCCCTTTTC
T ss_pred CccccCCCCccccCCCCCC
Confidence 2232 45787 99999754
No 41
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=97.49 E-value=0.00017 Score=87.05 Aligned_cols=95 Identities=21% Similarity=0.120 Sum_probs=68.3
Q ss_pred ceEEeeCCCCCCcCchHHHHHHHHHHHHHH--hcCCEEEEec---cCCCcc-----------------------------
Q psy17575 319 KVRTRFPPEPNGILHIGHAKAININFGYAA--AHNGICFLRY---DDTNPE----------------------------- 364 (832)
Q Consensus 319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar--~~gG~~iLRi---DDTDp~----------------------------- 364 (832)
-+++--+|.|||.|||||+++.++...+|| +..|.-++++ |++-..
T Consensus 36 ~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~ 115 (810)
T 1wkb_A 36 FYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEI 115 (810)
T ss_dssp EEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHH
T ss_pred EEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcccCchHHHHHHHHhCCCHHH
Confidence 377888999999999999999999999998 5678888885 333221
Q ss_pred --------cccHHHHHHHHHHHHHcCCCcC--cccccch----hHHHHHHHHHHHHHcCCccc
Q psy17575 365 --------KEEEKFFTGIKDMVQWLGYKPY--QITHSSD----YFHQLYEWAVKLIKKGLAYV 413 (832)
Q Consensus 365 --------r~~~e~~~~I~edL~WLGl~pd--~~~~qSd----~~~~~ye~A~~Li~~G~AY~ 413 (832)
.-...+.+.|.+++++||+..| ..++.++ |.........+|.++|++|.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~ 178 (810)
T 1wkb_A 116 LWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVK 178 (810)
T ss_dssp HHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHHHHHHHHHHHHHCCCEEE
Confidence 1123455789999999997655 5544444 33333344568999999986
No 42
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=97.43 E-value=0.0002 Score=87.36 Aligned_cols=94 Identities=23% Similarity=0.238 Sum_probs=67.2
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEe---ccCCCcc-------------cccHHHHHHHHHHHHHc
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLR---YDDTNPE-------------KEEEKFFTGIKDMVQWL 381 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLR---iDDTDp~-------------r~~~e~~~~I~edL~WL 381 (832)
+++=-+|.|||.|||||+++.++-..+||. ..|.-++. +|+.+.+ .-..++.+.+.++++.|
T Consensus 36 ~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~~L 115 (878)
T 2v0c_A 36 YVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLM 115 (878)
T ss_dssp EEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 444456999999999999999988777764 33544444 4554432 22457889999999999
Q ss_pred CCCcC--cc--cccchhHHHHHHHHHHHHHcCCccc
Q psy17575 382 GYKPY--QI--THSSDYFHQLYEWAVKLIKKGLAYV 413 (832)
Q Consensus 382 Gl~pd--~~--~~qSd~~~~~ye~A~~Li~~G~AY~ 413 (832)
|+..| .. +..++|.........+|.++|++|.
T Consensus 116 Gi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~ 151 (878)
T 2v0c_A 116 GILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYR 151 (878)
T ss_dssp TCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 98655 43 4445555555566778999999986
No 43
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=97.27 E-value=0.00039 Score=84.69 Aligned_cols=95 Identities=23% Similarity=0.293 Sum_probs=66.2
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEe---ccCCCcc-------------cccHHHHHHHHHHHHHc
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLR---YDDTNPE-------------KEEEKFFTGIKDMVQWL 381 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLR---iDDTDp~-------------r~~~e~~~~I~edL~WL 381 (832)
+++==+|.|||.|||||+++.++--.+||. ..|.-+++ +||...+ .-..++.+.|.++|+.|
T Consensus 56 ~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~~L 135 (880)
T 4arc_A 56 YCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKML 135 (880)
T ss_dssp EEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 344446999999999999999998888874 45655555 4444322 12346788999999999
Q ss_pred CCCcC--ccccc--chhHHHHHHHHHHHHHcCCcccc
Q psy17575 382 GYKPY--QITHS--SDYFHQLYEWAVKLIKKGLAYVC 414 (832)
Q Consensus 382 Gl~pd--~~~~q--Sd~~~~~ye~A~~Li~~G~AY~C 414 (832)
|+..| ..+.. .+|.........+|.++|++|.-
T Consensus 136 Gis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~ 172 (880)
T 4arc_A 136 GFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKK 172 (880)
T ss_dssp TCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEe
Confidence 98765 44333 33444444556689999999974
No 44
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=96.96 E-value=0.0024 Score=71.20 Aligned_cols=191 Identities=15% Similarity=0.194 Sum_probs=110.9
Q ss_pred CcccccccHHHHHHhhhhc-CCceEEeeCCCCCCcCchHHHHHHH-HHHHHHHhcCCEEEEeccC-C----Cc---cccc
Q psy17575 298 GYVVTEQTHDLLREHIKYT-GGKVRTRFPPEPNGILHIGHAKAIN-INFGYAAAHNGICFLRYDD-T----NP---EKEE 367 (832)
Q Consensus 298 ~~~~~~~~~~~~~~hl~~~-~~~v~tRFaPsPtG~LHIGharaaL-~n~l~Ar~~gG~~iLRiDD-T----Dp---~r~~ 367 (832)
|.+......+.+.+.++.. .-.+.+=|.| ||.|||||...++ .+| +...+|..+++=|-| + |+ ....
T Consensus 53 g~i~~~~d~~~l~~~~~~~~p~~i~sG~~P--TG~lHLGh~v~~~~~~~-lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i 129 (392)
T 3jxe_A 53 KFFFSHRDYDLILKDYEEGRGFFLYTGRGP--SGPMHIGHIIPFFATKW-LQEKFGVNLYIQITDDEKFLFKENLTFDDT 129 (392)
T ss_dssp TSEEEEESHHHHHHHHHTTCCCEEEEEECC--SSCCBHHHHHHHHHHHH-HHHHHCCEEEEEECHHHHHHHCSSCCHHHH
T ss_pred cCcccccCHHHHHHHHhcCCCeEEEeccCC--CCchhHHHHHHHHHHHH-HHHhcCCceEEEecchHHhhcCCCCCHHHH
Confidence 5555333334444445432 2245556665 5999999999885 788 455577765554444 2 22 1233
Q ss_pred HHHHHHHHHHHHHcCCCcCc--ccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHH
Q psy17575 368 EKFFTGIKDMVQWLGYKPYQ--ITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEA 445 (832)
Q Consensus 368 ~e~~~~I~edL~WLGl~pd~--~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~ 445 (832)
.++...+..++..+|++|++ +..||+... |++.+..|- |.+|-.++++..
T Consensus 130 ~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~-~~~~~~~l~-------~~~t~~~~~~~~-------------------- 181 (392)
T 3jxe_A 130 KRWAYDNILDIIAVGFDPDKTFIFQNSEFTK-IYEMAIPIA-------KKINFSMAKAVF-------------------- 181 (392)
T ss_dssp HHHHHHHHHHHHTTCCCTTSEEEEETTTSTH-HHHHHHHHH-------HHSBHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHHHhCcCccceEEEECchhHH-HHHHHHHHH-------hhCCHHHHhhhh--------------------
Confidence 45556677777888999984 688999876 777776663 666666554321
Q ss_pred HHcCcccCCCceEEEEecccCCCCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCC-C-CcceeeecccccccchhH
Q psy17575 446 MKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSI-E-HITHSLCTKEFQSRRSSY 523 (832)
Q Consensus 446 m~~g~~~~g~~~lR~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l-~-gITHvlRg~E~~~~~~~~ 523 (832)
|. .++. ..| ...||..+=| |.+ . .-++|..|.|-..+-..-
T Consensus 182 ---~~-~~~~---------------------------~~g--~f~YP~LQaa----Dil~~~~a~~vpvG~DQ~~hl~l~ 224 (392)
T 3jxe_A 182 ---GF-TEQS---------------------------KIG--MIFFPAIQIA----PTFFERKRCLIPAAIDQDPYWRLQ 224 (392)
T ss_dssp ---CC-CTTS---------------------------BHH--HHHHHHHHHG----GGGSSSSCEEEEEEGGGHHHHHHH
T ss_pred ---cc-CCCC---------------------------chH--HHHHHHHHHh----hHHhhcCCceeecccchHHHHHHH
Confidence 00 0000 000 0114443322 222 2 257889999966554444
Q ss_pred HHHHHhcCCCCCCccccccc-CCCC--cccchhHHH
Q psy17575 524 YWLCNALDIYCPVQWEYGRL-NVNY--TVVSKRKIA 556 (832)
Q Consensus 524 ~~L~~aL~~~~P~~~ef~hL-~l~g--tkLSKRk~~ 556 (832)
.-+...+|...|.......| .++| +||||+..+
T Consensus 225 Rdla~r~n~~~p~~l~~~~l~gLdG~~~KMSKS~~n 260 (392)
T 3jxe_A 225 RDFAESLGYYKTAALHSKFVPSLTSLSGKMSASKPE 260 (392)
T ss_dssp HHHTGGGTSCCCEEEEECCCCCSSCSSSCCCTTSGG
T ss_pred HHHHHHcCCCCCeeeecccccCCCCCccccccCCCC
Confidence 45667788777765443334 3567 599999854
No 45
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=96.90 E-value=0.0043 Score=70.01 Aligned_cols=190 Identities=15% Similarity=0.115 Sum_probs=105.6
Q ss_pred HHHHHHhhhhcCCceEEeeCCCCCCc-CchHHHHHHHHHHHHHHhcCCEEEEeccCC-----Ccc-----c------ccH
Q psy17575 306 HDLLREHIKYTGGKVRTRFPPEPNGI-LHIGHAKAININFGYAAAHNGICFLRYDDT-----NPE-----K------EEE 368 (832)
Q Consensus 306 ~~~~~~hl~~~~~~v~tRFaPsPtG~-LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-----Dp~-----r------~~~ 368 (832)
.+.|.+.|+. +++++.=..=.|||. |||||.. ++.+|..-+..|..+++=|-|- ||. | ...
T Consensus 25 ~~~L~~~L~~-~~~~~vy~G~dPTg~sLHlGh~v-~l~~l~~lQ~~G~~~i~lIgD~ta~igdpsgk~~~R~~l~~e~i~ 102 (432)
T 1h3f_A 25 EEELLAKLKE-GRPLTVKLGADPTRPDLHLGHAV-VLRKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETR 102 (432)
T ss_dssp HHHHHHHHHT-CSCCEEEEEECTTCCSCBHHHHH-HHHHHHHHHHTTCEEEEEECCCC---------------------H
T ss_pred HHHHHHHHhc-CCCcEEEEcccCCCCCCchhhHH-HHHHHHHHHHCCCCEEEEEccceEEecCCCCcccccccCCHHHHH
Confidence 6678888852 344333333456785 9999999 7888887778888888877772 452 1 123
Q ss_pred HHHHHHHHHHHHcCCC--cC--cccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHH
Q psy17575 369 KFFTGIKDMVQWLGYK--PY--QITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFE 444 (832)
Q Consensus 369 e~~~~I~edL~WLGl~--pd--~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~ 444 (832)
+....++..+. .|++ |+ .+..||+.+...+ ...+++ +.|+.|..+|.+. + -|.
T Consensus 103 ~n~~~~~~ql~-~~ld~~p~k~~i~~nSd~~~~~~--~~~~l~----l~~~~tv~~ml~~--------~--------~~k 159 (432)
T 1h3f_A 103 ENAKTYVAQAG-KILRQEPHLFELRYNSEWLEGLT--FKEVVR----LTSLMTVAQMLER--------E--------DFK 159 (432)
T ss_dssp HHHHHHHHHHT-TTSCCCTTTEEEEETHHHHTTCB--HHHHHH----HHTTSBHHHHTTS--------H--------HHH
T ss_pred HHHHHHHHHHH-HHhcCCCCceEEEECCcccccCc--HHHHHH----HhCcCcHHHHHhh--------h--------hHH
Confidence 33444444442 5777 77 4688998754221 122333 2356666655421 0 111
Q ss_pred -HHHcCcccCCCceEEEEecccCCCCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhH
Q psy17575 445 -AMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSY 523 (832)
Q Consensus 445 -~m~~g~~~~g~~~lR~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~ 523 (832)
++..+ ++ +. .+ .+ .||.. .+.|=...+.++++.|.|-..+-..-
T Consensus 160 ~r~~~~---~~---------------------is------~~-ef-~YPlL---QaaDil~l~~~l~~gG~DQ~~ni~l~ 204 (432)
T 1h3f_A 160 KRYEAG---IP---------------------IS------LH-EL-LYPFA---QAYDSVAIRADVEMGGTDQRFNLLVG 204 (432)
T ss_dssp HHHHTT---CC---------------------CB------GG-GG-THHHH---HHHHHHHHTCSEEEEEGGGHHHHHHH
T ss_pred HHhhcC---CC---------------------CC------cc-cc-chhhH---HhhhhhhcCccEEEechHHHHHHHHH
Confidence 11100 00 00 00 11 13321 12222234689999999988777666
Q ss_pred HHHHHhcCCCCCCccccccc-CCCCc-ccchhHH
Q psy17575 524 YWLCNALDIYCPVQWEYGRL-NVNYT-VVSKRKI 555 (832)
Q Consensus 524 ~~L~~aL~~~~P~~~ef~hL-~l~gt-kLSKRk~ 555 (832)
.-|...+|..+|.......| .++|+ ||||+..
T Consensus 205 rdlarr~~~~~~~~lt~pll~gldG~~KMSKS~~ 238 (432)
T 1h3f_A 205 REVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLD 238 (432)
T ss_dssp HHHHHHTTCCCCEEEEECCCBCTTSSSBCCGGGT
T ss_pred HHHHHHhCCCCceEeecccccCCCCccccCcCCC
Confidence 77788888766644332333 35786 9999975
No 46
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=96.84 E-value=0.00048 Score=83.45 Aligned_cols=90 Identities=18% Similarity=0.218 Sum_probs=63.6
Q ss_pred EeeCCCCCCcCchHHHHHHHHHHHHHH--hcCCEEEEeccCCCcc---------------------------------cc
Q psy17575 322 TRFPPEPNGILHIGHAKAININFGYAA--AHNGICFLRYDDTNPE---------------------------------KE 366 (832)
Q Consensus 322 tRFaPsPtG~LHIGharaaL~n~l~Ar--~~gG~~iLRiDDTDp~---------------------------------r~ 366 (832)
+==+|.|||.|||||+++.++.-.+|| +..|.-++++--+|.- .-
T Consensus 43 ~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~~~ 122 (821)
T 1ile_A 43 YEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRES 122 (821)
T ss_dssp CCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHH
T ss_pred ecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhcccccchHhhcCHHHHHHHHHHH
Confidence 334699999999999999999988887 3456555554444321 01
Q ss_pred cHHHHHHHHHHHHHcC--CCcCcccccchhHHHHHH----HHHHHHHcCCccc
Q psy17575 367 EEKFFTGIKDMVQWLG--YKPYQITHSSDYFHQLYE----WAVKLIKKGLAYV 413 (832)
Q Consensus 367 ~~e~~~~I~edL~WLG--l~pd~~~~qSd~~~~~ye----~A~~Li~~G~AY~ 413 (832)
..++.+.+.+++++|| ++|+..+..++ ..|++ ...+|.++|++|.
T Consensus 123 ~~~~~~~~~~~~~~lg~~~dwd~~~~T~d--~~~~~~v~~~f~~L~~~Gliy~ 173 (821)
T 1ile_A 123 VFTYEKEWEAFTERIAYWVDLEDAYATLE--PTYIESIWWSLKNLFDRGLLYR 173 (821)
T ss_dssp TTTTHHHHTTHHHHTTCCCEEEEEEETTS--HHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHhCCeEccCCCeEECC--HHHHHHHHHHHHHHHHcCCeee
Confidence 2256778999999999 78887655554 33443 3447999999986
No 47
>3al0_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=96.76 E-value=0.0092 Score=67.97 Aligned_cols=159 Identities=16% Similarity=0.218 Sum_probs=116.7
Q ss_pred HHHHHH-hCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHHH-HHhhccCC---------CccchHHHH
Q psy17575 65 MISAFL-SVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYH-LASKIKSQ---------SSIHLPLLV 133 (832)
Q Consensus 65 l~~lF~-~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy~-lAtk~k~~---------~~~~r~~l~ 133 (832)
..+.|. ..||++.-|.-++.++.++.-+.+++.. +. -++...+.|.+ |...++.. ...+...|+
T Consensus 306 ~~~R~~~eygls~~dA~~L~~~~~~a~~fe~~~~~-~~----~~k~~anw~~~el~~~ln~~~~~i~~~~i~p~~la~li 380 (482)
T 3al0_B 306 KAERFMREYGLPEYDAKVLTSSKELAEFFEECVKV-VN----RPKDLSNWIMTEVLRELNERNIEITESKLTPQHFADLF 380 (482)
T ss_dssp HHHHHHHHHSCCHHHHHHHTSSHHHHHHHHHHHHH-SC----CHHHHHHHHHTHHHHHTTTTTCCTTSSSCCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHcChHHHHHHHHHHHh-cC----CHHHHHHHHHHHHHHHHHHcCCCHhhcCCCHHHHHHHH
Confidence 445565 5999999999999999999988887553 22 26777777666 66555532 235788899
Q ss_pred HHHHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHH-HHHHHHHHHHHHHHHHHHhcc--cccchhhhHH
Q psy17575 134 KYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSE-DIEETVSKVVEKHKAELLDKR--YRYNLGLVMQ 210 (832)
Q Consensus 134 ~~I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~E-qI~~~V~~~i~~~k~~l~~~r--y~~n~g~ll~ 210 (832)
+.|.+|+|.+. .....+.-+-.. .-+.++.-++.|.. .+|.+ +|+++|+++|++|-+.+.+-| -.-.+|.+||
T Consensus 381 ~li~~g~Is~~-~ak~vl~~~~~~--~~~p~~IIe~~gl~-qiSDe~el~~iV~evIa~np~~v~~~k~Gk~k~~G~lmG 456 (482)
T 3al0_B 381 KLMDEGKISIK-IAKEIFPEVFET--GKMPSQIVEEKGLT-QINDEKLIEELVKKAMEQNPKAVQDYKSGKKKAAGFFVG 456 (482)
T ss_dssp HHHTTTSSCTT-HHHHSHHHHHHH--CCCHHHHHHHHTCC-CCCCSSCHHHHHHHHHHTCHHHHHHHTTCCTTSTHHHHH
T ss_pred HHHHcCCccHH-HHHHHHHHHHhc--CCCHHHHHHHhCCc-cCCcHHHHHHHHHHHHHhChHHHHHHhcCCHHHHHHHHH
Confidence 99999999884 445555554433 25788888888887 57777 999999999999988766522 2236999999
Q ss_pred HHHhhCC-CCChhhhHHHHHHHH
Q psy17575 211 EVRTLLK-WADGKYIKSEVDVQV 232 (832)
Q Consensus 211 ~vR~~Lk-WAd~k~vK~~vD~~~ 232 (832)
+|.+..+ =|||+.|.+.|.+.+
T Consensus 457 qVMk~tkGkADp~~V~~llke~L 479 (482)
T 3al0_B 457 YVMRETKGKANPELTNRIIQKLL 479 (482)
T ss_dssp HHHHTTSSCSCHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHh
Confidence 9977443 699998888766543
No 48
>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B
Probab=96.73 E-value=0.017 Score=65.84 Aligned_cols=165 Identities=12% Similarity=0.180 Sum_probs=118.1
Q ss_pred HHHHHHH-hCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHHH-HHhhccC---------CCccchHHH
Q psy17575 64 SMISAFL-SVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYH-LASKIKS---------QSSIHLPLL 132 (832)
Q Consensus 64 ~l~~lF~-~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy~-lAtk~k~---------~~~~~r~~l 132 (832)
+..+.|. ..||++.-|.-++.++.++.-+.+++.. + .-++..++.|.+ |...++. -...+...|
T Consensus 298 ~k~~R~~~eygLs~~dA~~L~~~~~~a~~Fe~~v~~-~----~~~k~~anw~~~el~~~ln~~~~~i~~~~i~p~~la~l 372 (483)
T 3ip4_B 298 ERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEH-G----ADVKLTSNWLMGGVNEYLNKNQVELLDTKLTPENLAGM 372 (483)
T ss_dssp HHHHHHHHTSCCCHHHHHHHTSSHHHHHHHHHHHTT-T----CCHHHHHHHHHTHHHHHHHHTTCCGGGSSCCHHHHHHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHcCHHHHHHHHHHHHh-c----CCHHHHHHHHHHHHHHHHhhCCCCHHhcCCCHHHHHHH
Confidence 3445564 5999999999999998888888777542 1 135666666543 4433332 124678899
Q ss_pred HHHHHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHh--cccccchhhhHH
Q psy17575 133 VKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLD--KRYRYNLGLVMQ 210 (832)
Q Consensus 133 ~~~I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~--~ry~~n~g~ll~ 210 (832)
++.|.+|+|.+ .....-+..+-..+ -+.++.-++.|...+=.+++|+++|+++|++|.+.+.. .+-.-.+|-|+|
T Consensus 373 i~li~~g~Is~-~~ak~vl~~~~~~~--~~p~~iVee~GL~qisD~~eLe~iV~eVIa~np~~v~~~k~GK~ka~gfLVG 449 (483)
T 3ip4_B 373 IKLIEDGTMSS-KIAKKVFPELAAKG--GNAKQIMEDNGLVQISDEATLLKFVNEALDNNEQSVEDYKNGKGKAMGFLVG 449 (483)
T ss_dssp HHHHHHTSSCH-HHHHHHHHHHHHHC--CCHHHHHHTTTCCCBCCHHHHHHHHHHHHHHCHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHcCCccH-HHHHHHHHHHHhcC--CCHHHHHHhcCCccCCCHHHHHHHHHHHHHHCHHHHHHHHccCHHHHHHHHH
Confidence 99999999986 44555565554432 57889999999987666679999999999999987752 222335888888
Q ss_pred HHHh-hCCCCChhhhHHHHHHHHHhhc
Q psy17575 211 EVRT-LLKWADGKYIKSEVDVQVLNLL 236 (832)
Q Consensus 211 ~vR~-~LkWAd~k~vK~~vD~~~l~lL 236 (832)
+|=+ .=-=|||+.|.+.+.+.+.+-|
T Consensus 450 QVMK~tkGKAdP~~VnelL~e~L~~~~ 476 (483)
T 3ip4_B 450 QIMKASKGQANPQLVNQLLKQELDKRL 476 (483)
T ss_dssp HHHHHTTSCBCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHhHH
Confidence 8854 3335999999998888776654
No 49
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=96.73 E-value=0.0025 Score=77.68 Aligned_cols=95 Identities=21% Similarity=0.188 Sum_probs=65.9
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCc--------------------ccc-----------
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNP--------------------EKE----------- 366 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp--------------------~r~----------- 366 (832)
+++==+|.|||.|||||+++.++--.+||. ..|.=+|+.--+|. ..-
T Consensus 37 ~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~ 116 (862)
T 1gax_A 37 VIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQ 116 (862)
T ss_dssp EEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHH
T ss_pred EEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHH
Confidence 445557999999999999999999888875 45666665544432 100
Q ss_pred -cHHHHHHHHHHHHHcCCCcC--cccccch--hHHHHHHHHHHHHHcCCcccc
Q psy17575 367 -EEKFFTGIKDMVQWLGYKPY--QITHSSD--YFHQLYEWAVKLIKKGLAYVC 414 (832)
Q Consensus 367 -~~e~~~~I~edL~WLGl~pd--~~~~qSd--~~~~~ye~A~~Li~~G~AY~C 414 (832)
..+|.+.|.++++.||+..| ..+...| |.........+|.++|++|.-
T Consensus 117 ~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~kGliYrg 169 (862)
T 1gax_A 117 WKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRA 169 (862)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 35678899999999997644 4333333 333333445589999999974
No 50
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=96.69 E-value=0.0048 Score=69.61 Aligned_cols=104 Identities=15% Similarity=0.223 Sum_probs=63.2
Q ss_pred CCcccccccHHHHHHhhhhc-CCceEEeeCCCCC-CcCchHHHHHHH-HHHHHHHhcCCEEEEeccC----C-Ccc---c
Q psy17575 297 DGYVVTEQTHDLLREHIKYT-GGKVRTRFPPEPN-GILHIGHAKAIN-INFGYAAAHNGICFLRYDD----T-NPE---K 365 (832)
Q Consensus 297 ~~~~~~~~~~~~~~~hl~~~-~~~v~tRFaPsPt-G~LHIGharaaL-~n~l~Ar~~gG~~iLRiDD----T-Dp~---r 365 (832)
.|.+......+.|.+.++.. .-.+.+=|- || |.|||||...++ ++| +.+.+|...++=|-| + ||. .
T Consensus 81 RG~i~~~~d~~~l~~~l~~g~~~~vy~G~d--PTag~LHLGh~v~~~~l~~-lQ~~~g~~~i~lI~D~ta~l~~~~~t~e 157 (432)
T 2ip1_A 81 KGLFFSERDFTKILDLYEQGKPFFLYTGRG--PSSDSMHLGHMIPFVFTKW-LQEVFDVPLVIELTDDEKFLFKHKLTIN 157 (432)
T ss_dssp TTSEEEEESHHHHHHHHHHTCCCEEEEEEC--CCSSCCBGGGHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHCTTCCHH
T ss_pred CCCcccCCCHHHHHHHHhcCCCeEEEEeec--CCCCCccHHHHHHHHHHHH-HHHHcCCeEEEEEecccceeCCCCCCHH
Confidence 35544333344555556542 223445554 66 789999999977 687 444578776666666 3 222 2
Q ss_pred ccHHHHHHHHHHHHHcCCCcC--cccccchhH-HHHHHHHH
Q psy17575 366 EEEKFFTGIKDMVQWLGYKPY--QITHSSDYF-HQLYEWAV 403 (832)
Q Consensus 366 ~~~e~~~~I~edL~WLGl~pd--~~~~qSd~~-~~~ye~A~ 403 (832)
...+++..+..++-.+|++|. .+..||+.. ..+++.+.
T Consensus 158 ~i~~~~~~~~~~~lA~GlDp~k~~i~~nSd~~~~~~~~~~~ 198 (432)
T 2ip1_A 158 DVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVV 198 (432)
T ss_dssp HHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEeCchhhhhhHHHHHH
Confidence 234555566777777899987 467899875 34555444
No 51
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=96.67 E-value=0.0012 Score=81.45 Aligned_cols=95 Identities=22% Similarity=0.128 Sum_probs=63.4
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEec---cCCC--------------------------------
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRY---DDTN-------------------------------- 362 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRi---DDTD-------------------------------- 362 (832)
+++==+|.|||.|||||+++.++--.+||. ..|.-+|+. |.+-
T Consensus 37 ~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~ 116 (967)
T 1wz2_A 37 YITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEIL 116 (967)
T ss_dssp BEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHH
T ss_pred EEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHH
Confidence 445557999999999999999998888864 446555553 2221
Q ss_pred -----cccccHHHHHHHHHHHHHcCCC--cCcccccch----hHHHHHHHHHHHHHcCCcccc
Q psy17575 363 -----PEKEEEKFFTGIKDMVQWLGYK--PYQITHSSD----YFHQLYEWAVKLIKKGLAYVC 414 (832)
Q Consensus 363 -----p~r~~~e~~~~I~edL~WLGl~--pd~~~~qSd----~~~~~ye~A~~Li~~G~AY~C 414 (832)
+..-...|.+.+.++++.||+. |+..+...| |.........+|.++|++|.-
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~~~F~~L~~kGliyr~ 179 (967)
T 1wz2_A 117 WTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKG 179 (967)
T ss_dssp HGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHHHHHHHHHHTTTTTCEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHHHHHHHHHHHHHCCCEEEe
Confidence 1112335668899999999974 556554444 322233344579999999874
No 52
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=96.49 E-value=0.0024 Score=78.22 Aligned_cols=95 Identities=19% Similarity=0.087 Sum_probs=63.8
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCC----------------c-----cc-------ccHH
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTN----------------P-----EK-------EEEK 369 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTD----------------p-----~r-------~~~e 369 (832)
+++==+|.|||.|||||+++.++--.+||. ..|.-++..=-+| | +. -..+
T Consensus 51 ~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~~~ 130 (917)
T 1ffy_A 51 ILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALE 130 (917)
T ss_dssp CEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHHHH
T ss_pred eeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHHHH
Confidence 444557999999999999999998888875 3454444332222 2 10 1346
Q ss_pred HHHHHHHHHHHcCC--CcCcccccch--hHHHHHHHHHHHHHcCCcccc
Q psy17575 370 FFTGIKDMVQWLGY--KPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC 414 (832)
Q Consensus 370 ~~~~I~edL~WLGl--~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C 414 (832)
+.+.+.++++.||+ +|+..+...+ |.........+|.++|++|.-
T Consensus 131 ~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kGliYr~ 179 (917)
T 1ffy_A 131 QIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKG 179 (917)
T ss_dssp HHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcCCeEec
Confidence 78899999999998 4777655554 222222334579999999873
No 53
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=95.98 E-value=0.0086 Score=66.34 Aligned_cols=111 Identities=11% Similarity=0.084 Sum_probs=70.1
Q ss_pred HHHHHHhhhhc-CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccC----C-Ccc-cc---cHHHH-HHH
Q psy17575 306 HDLLREHIKYT-GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDD----T-NPE-KE---EEKFF-TGI 374 (832)
Q Consensus 306 ~~~~~~hl~~~-~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDD----T-Dp~-r~---~~e~~-~~I 374 (832)
.+.|.++|+.. .-.+.+=|-| ||.|||||-..++.+|..-+..|..+++=|-| | ||. +. ..+.. ..+
T Consensus 21 ~~~l~~~l~~~~~~~vy~G~~P--Tg~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~ 98 (375)
T 2cyc_A 21 VENLRHLFEIGAPLQHYIGFEI--SGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYF 98 (375)
T ss_dssp HHHHHHHHHHTCCCBEEEEECC--CSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTH
T ss_pred HHHHHHHHhcCCCcEEEeCCCC--CCCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHH
Confidence 56777888652 3356666765 58999999556888887777788888777766 2 331 11 12233 334
Q ss_pred H----HHHHHcCCCcC--cccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhc
Q psy17575 375 K----DMVQWLGYKPY--QITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKG 423 (832)
Q Consensus 375 ~----edL~WLGl~pd--~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~ 423 (832)
. .++..+|++|+ .+..||+..... .+..-++. +-|+++-.+|.+
T Consensus 99 ~~~~~~~~la~G~dp~k~~i~~qS~~~~~~-~~~~~~~~----~~~~~~~~~m~~ 148 (375)
T 2cyc_A 99 KVGMEKSIEVMGGDPKKVEFVLASEILEKG-DYWQTVID----ISKNVTLSRVMR 148 (375)
T ss_dssp HHHHHHHHHHTTCCGGGSEEEETHHHHTBH-HHHHHHHH----HHTTSBHHHHHH
T ss_pred HHHHHHHHHHhCCCccceEEEEcchhhhhh-HHHHHHHH----HhceeEHHHHhc
Confidence 4 77888999998 468899866532 22222232 336667666664
No 54
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=95.95 E-value=0.014 Score=65.72 Aligned_cols=193 Identities=13% Similarity=0.084 Sum_probs=102.9
Q ss_pred HHHHHHhhhhcCCceEEeeCCCCCCc-CchHHHHHHHHHHHHHHhcCCEEEEeccC----C-Cccc----------ccHH
Q psy17575 306 HDLLREHIKYTGGKVRTRFPPEPNGI-LHIGHAKAININFGYAAAHNGICFLRYDD----T-NPEK----------EEEK 369 (832)
Q Consensus 306 ~~~~~~hl~~~~~~v~tRFaPsPtG~-LHIGharaaL~n~l~Ar~~gG~~iLRiDD----T-Dp~r----------~~~e 369 (832)
.+.|.+.|+...-.+.+=| -|||. |||||+. ++.+|..-+..|-.+++=|-| | ||.| +..+
T Consensus 21 ~e~L~~~L~~~~~~iy~G~--dPTg~sLHLGhlv-~l~~l~~lQ~~G~~~i~lIgD~ta~igdpsk~~~R~~~~~e~i~~ 97 (432)
T 2jan_A 21 LDTLAAEAQRGPMTVYAGF--DPTAPSLHAGHLV-PLLTLRRFQRAGHRPIVLAGGATGMIGDPRDVGERSLNEADTVAE 97 (432)
T ss_dssp HHHHHHHHHHSCCEEEEEE--CCSSSSCBGGGHH-HHHHHHHHHHTTCEEEEEECHHHHHHHCCCCTTTSGGGHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEEee--CCCCCCcCHHHHH-HHHHHHHHHHCCCcEEEEEcCcEEEccCCcccccccCCCHHHHHH
Confidence 5667777763322344444 56795 9999955 777887777778877777655 2 4532 1223
Q ss_pred HHHHHHHHH-HHc--CCCcCc--ccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHH
Q psy17575 370 FFTGIKDMV-QWL--GYKPYQ--ITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFE 444 (832)
Q Consensus 370 ~~~~I~edL-~WL--Gl~pd~--~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~ 444 (832)
....|.+.+ .|| |++|++ +..||+.+..+. ...+++ -+-|+.|-.+|.+.. .|.
T Consensus 98 n~~~~~~~~~~~La~G~dp~k~~i~~nsdw~~~~~--~l~~lr---~l~~~~tv~~m~~~~----------------~~k 156 (432)
T 2jan_A 98 WTERIRGQLERFVDFDDSPMGAIVENNLEWTGSLS--AIEFLR---DIGKHFSVNVMLARD----------------TIR 156 (432)
T ss_dssp HHHHHHHHHHHHSCCSSSTTCCEEEETHHHHSSCB--HHHHHH---HTGGGCBHHHHHHSH----------------HHH
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEECchhcccCc--HHHHHH---HHhccCcHHHHhcch----------------HHh
Confidence 444444433 344 566763 678888654311 111221 133777777776421 111
Q ss_pred HHHcCcccCCCceEEEEecccCCCCCceEEEeeeCCCCCCCCceeEee---ccceeeeeecCCCCcceeeecccccccch
Q psy17575 445 AMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYP---TYDYTHCLCDSIEHITHSLCTKEFQSRRS 521 (832)
Q Consensus 445 ~m~~g~~~~g~~~lR~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~~i~P---tY~fA~~VdD~l~gITHvlRg~E~~~~~~ 521 (832)
+... .++- .. + . ..|| +|||-+.-.+ .+.++++-|.|-..+-.
T Consensus 157 ~r~~---~~~i-------s~--------------------~-e-f~YPlLQaaDil~l~~~--~~~~i~~gG~DQ~~ni~ 202 (432)
T 2jan_A 157 RRLA---GEGI-------SY--------------------T-E-FSYLLLQANDYVELHRR--HGCTLQIGGADQWGNII 202 (432)
T ss_dssp HHTS---TTCC-------BH--------------------H-H-HHHHHHHHHHHHHHHHH--HCCCEEEECSTTHHHHH
T ss_pred hhhc---CCCc-------ch--------------------H-H-HHHHHHHHHHHHHHhcc--CCCcEEeccHHHHHHHH
Confidence 1000 0000 00 0 0 0122 2333211000 17889999999776655
Q ss_pred hHHHHHHhcCCCCCCccccccc-CCCCcccchhHHH
Q psy17575 522 SYYWLCNALDIYCPVQWEYGRL-NVNYTVVSKRKIA 556 (832)
Q Consensus 522 ~~~~L~~aL~~~~P~~~ef~hL-~l~gtkLSKRk~~ 556 (832)
.-.-|...++..+|+......| .++|+||||+..+
T Consensus 203 lgrdlarr~~~~~~~~l~~plL~~ldG~KMSKS~~n 238 (432)
T 2jan_A 203 AGVRLVRQKLGATVHALTVPLVTAADGTKFGKSTGG 238 (432)
T ss_dssp HHHHHHHHHHCCCCEEEECCCCBCTTSCBTTBCSSS
T ss_pred HHHHHHHHhCCCCccccccccccCCCcCcCCCCCCC
Confidence 5555667777665544333333 4579999999754
No 55
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=95.95 E-value=0.008 Score=67.09 Aligned_cols=97 Identities=18% Similarity=0.256 Sum_probs=57.2
Q ss_pred CcccccccHHHHHHhhhhcCCceEEeeCCCCCC-cCchHHHHHH-HHHHHHHHhcCCEEEEeccCC-----C--cccccH
Q psy17575 298 GYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNG-ILHIGHAKAI-NINFGYAAAHNGICFLRYDDT-----N--PEKEEE 368 (832)
Q Consensus 298 ~~~~~~~~~~~~~~hl~~~~~~v~tRFaPsPtG-~LHIGharaa-L~n~l~Ar~~gG~~iLRiDDT-----D--p~r~~~ 368 (832)
|.+......+.+.+.++. +.+++.=-.=.||| .|||||...+ +.+| +-+.+|..+++-|-|- + +..+..
T Consensus 58 G~~~~~~d~~~~l~~~~~-~~~~~vy~G~~PTg~~lHLGh~v~~~~~~~-lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~ 135 (395)
T 3i05_A 58 GIFFSHRDLNLLLDVYES-GQPFYLYTGRGPSSESMHMGHLIPFMFTKW-LQDSFRVPLVIQMTDDEKFYFRNIPMEQVE 135 (395)
T ss_dssp TSEEEEESHHHHHHHHHT-TCCEEEEEEECCCSSCCBGGGSHHHHHHHH-HHHHHTCCEEEEECHHHHHHHSCCCHHHHH
T ss_pred CCccccccHHHHHHHHhc-CCCeEEEEeecCCCccchHHHHHHHHHHHH-HHHhcCCcEEEEEcchHHHhcCCCCHHHHH
Confidence 555432223333333432 34444444445789 6999999998 7788 5566666666665553 1 112234
Q ss_pred HHHHHHHHHHHHcCCCcCc--ccccchhHH
Q psy17575 369 KFFTGIKDMVQWLGYKPYQ--ITHSSDYFH 396 (832)
Q Consensus 369 e~~~~I~edL~WLGl~pd~--~~~qSd~~~ 396 (832)
++...+..++..+|++|++ +..||+...
T Consensus 136 ~~~~~~~~~~lA~GlDp~kt~i~~ns~~~~ 165 (395)
T 3i05_A 136 AMTTENIKDIIAMGFDPELTFIFRDFDYMG 165 (395)
T ss_dssp HHHHHHHHHHHTTTCCTTSEEEEEHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCCceEEEEcCHHHH
Confidence 5556677777778999985 455666543
No 56
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=95.84 E-value=0.017 Score=64.22 Aligned_cols=105 Identities=12% Similarity=0.178 Sum_probs=64.7
Q ss_pred CCcccccccHHHHHHhhhhcCCceEEeeCCCCCCcCchHHHHHH-HHHHHHHHhcCCEEEEeccCC--------Cccccc
Q psy17575 297 DGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAI-NINFGYAAAHNGICFLRYDDT--------NPEKEE 367 (832)
Q Consensus 297 ~~~~~~~~~~~~~~~hl~~~~~~v~tRFaPsPtG~LHIGharaa-L~n~l~Ar~~gG~~iLRiDDT--------Dp~r~~ 367 (832)
.|.+......+.+.+.++. +++++.=-.=.|||.|||||...+ +.+| +-+.+|..+++=|-|. +++. .
T Consensus 61 RG~i~~~~d~~~ll~~~~~-~~~~~vysG~~PTG~lHLGh~v~~~~~~~-lQ~~~g~~v~i~I~D~~a~~~r~~~~e~-i 137 (386)
T 3hzr_A 61 RGVFLAEKSLDKFLDDVEA-KKPTFIFIQKYPQKEVALEEYITLEFARY-LQDAFNIQVIIQILDDIKVLNREATINE-A 137 (386)
T ss_dssp TTSEEEESSHHHHHHHHHT-TCCEEEEEEECCCSSCBGGGHHHHHHHHH-HHHHHCCEEEEEECHHHHHHTTSCCHHH-H
T ss_pred CcCccccccHHHHHHHHhc-CCCeEEEeccCCCCCccHHHHHHHHHHHH-HHHhcCCeEEEEeCchHHhhcCCCCHHH-H
Confidence 3666533223333333432 444444344467899999999999 8899 5566677777777662 3332 3
Q ss_pred HHHHHHHHHHHHHcCCCcCc--ccccchhHHHHHHHHHH
Q psy17575 368 EKFFTGIKDMVQWLGYKPYQ--ITHSSDYFHQLYEWAVK 404 (832)
Q Consensus 368 ~e~~~~I~edL~WLGl~pd~--~~~qSd~~~~~ye~A~~ 404 (832)
.++......++-.+|++|++ +..||++...++..+.+
T Consensus 138 ~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~~~~~~~~~ 176 (386)
T 3hzr_A 138 SKMSNDLMKYILAFGFNEDKTFIYTDYQYFGKMYRTISL 176 (386)
T ss_dssp HHHHHHHHHHHHHTCCCGGGEEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCcceEEEeccHHHHHHHHHHHH
Confidence 34444566777778999984 57789877645554444
No 57
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=95.65 E-value=0.01 Score=64.38 Aligned_cols=88 Identities=16% Similarity=0.090 Sum_probs=61.9
Q ss_pred CCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC-----Ccc-cccHHHHHHHHHHHHHcCCCcC--cccccchhHHHH
Q psy17575 327 EPNGILHIGHAKAININFGYAAAHNGICFLRYDDT-----NPE-KEEEKFFTGIKDMVQWLGYKPY--QITHSSDYFHQL 398 (832)
Q Consensus 327 sPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-----Dp~-r~~~e~~~~I~edL~WLGl~pd--~~~~qSd~~~~~ 398 (832)
.|||.|||||...++.+|..-+. |..+++-|-|. ||. .+..+....+..++..+|++|+ .+..||+..+ +
T Consensus 11 ~PTg~lHlG~~lg~l~~~~~lQ~-g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp~k~~i~~qS~~~~-~ 88 (322)
T 3tzl_A 11 QPSGDLHIGNYFGAIKQMVDAQE-KSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKE-V 88 (322)
T ss_dssp CCSSCCBHHHHHHTHHHHHHTTT-TSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEGGGCTH-H
T ss_pred CCCccccHHHHHHHHHHHHHHhc-CCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcchh-H
Confidence 46799999999988888866555 76666666553 332 1344566677788888999998 4788999764 4
Q ss_pred HHHHHHHHHcCCccccCCCHHHHhc
Q psy17575 399 YEWAVKLIKKGLAYVCHQKSDEMKG 423 (832)
Q Consensus 399 ye~A~~Li~~G~AY~C~Cs~eel~~ 423 (832)
.+++.. +-|+++-.+|.+
T Consensus 89 ~el~~~-------l~~~~~~~~l~r 106 (322)
T 3tzl_A 89 MELYWI-------LSQFTPMGLLER 106 (322)
T ss_dssp HHHHHH-------HGGGCBHHHHHS
T ss_pred HHHHHH-------HhccCcHHHHHh
Confidence 454433 348998888874
No 58
>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B*
Probab=95.43 E-value=0.021 Score=65.08 Aligned_cols=161 Identities=18% Similarity=0.238 Sum_probs=69.3
Q ss_pred HHHHHHH-hCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHH-HHHhhccC---------CCccchHHH
Q psy17575 64 SMISAFL-SVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLY-HLASKIKS---------QSSIHLPLL 132 (832)
Q Consensus 64 ~l~~lF~-~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy-~lAtk~k~---------~~~~~r~~l 132 (832)
+..+.|. ..||++.-|.-++.++.++.-+.+++... . -++..++.|. .|...++. -...+...|
T Consensus 301 ~~~~R~~~~ygLs~~dA~~L~~~~~~a~~fe~~~~~~-~----~~k~~anw~~~el~~~ln~~~~~i~~~~i~p~~la~l 375 (478)
T 3h0l_B 301 QRFERLIKEYGLSEYEAGILVNHKEVGDFFEEAVRHF-K----EPKGIVNWLINDLLGLLRDKGISIEESPVKPEHLAEL 375 (478)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHSHHHHHHHHHHHHHS-C----CHHHHHHHHHHTHHHHHHHHTCCGGGCSSCHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHcCHHHHHHHHHHHHhc-C----CHHHHHHHHHHHHHHHHHhCCCCHhhcCCCHHHHHHH
Confidence 3445565 59999999999999999999998887542 1 2455555544 23322221 234678899
Q ss_pred HHHHHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcc--cccchhhhHH
Q psy17575 133 VKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKR--YRYNLGLVMQ 210 (832)
Q Consensus 133 ~~~I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~r--y~~n~g~ll~ 210 (832)
++.|.+|+|.+ .....-+..+-..+ -+.++.-++.|....=.+++|+++|+++|++|.+.+..-| -.-.+|.+||
T Consensus 376 i~li~~g~Is~-~~ak~vl~~~~~~~--~~p~eIVee~gL~qisD~~el~~iV~evI~~np~~v~~~~~Gk~k~~g~lvG 452 (478)
T 3h0l_B 376 VKLIKEKVIST-KIGKEVIKEMVETG--KTPSQIVEEKGLKQITDENQIKELVKKIFEKHPKEVERLKQGEEKLIGFFVG 452 (478)
T ss_dssp HHHHHTTSSCH-HHHHHHHHHHHHHC--CCHHHHHHHHCC----------------------------------------
T ss_pred HHHHHcCCccH-HHHHHHHHHHHhcC--CCHHHHHHHcCCccCCCHHHHHHHHHHHHHhChHHHHHHHccCHHHHHHHHH
Confidence 99999999986 44555565554433 4778888899988655569999999999999887655221 1224777787
Q ss_pred HHHh-hCCCCChhhhHHHHHHHH
Q psy17575 211 EVRT-LLKWADGKYIKSEVDVQV 232 (832)
Q Consensus 211 ~vR~-~LkWAd~k~vK~~vD~~~ 232 (832)
+|-+ .=-=|||+.|.+.|.+.+
T Consensus 453 qVMK~tkGkAdp~~VnelL~e~L 475 (478)
T 3h0l_B 453 QVMRETRGKANPQVVNKVIRELV 475 (478)
T ss_dssp -----------------------
T ss_pred HHHHHhCCCCCHHHHHHHHHHHH
Confidence 7744 323599999888777654
No 59
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=95.24 E-value=0.031 Score=63.27 Aligned_cols=118 Identities=15% Similarity=0.241 Sum_probs=71.3
Q ss_pred CCcccccccHHHHHHhhhhcCCceEEeeCCCCC-CcCchHHHHHHH-HHHHHHHhcCCEEEEeccCC-----Cc---ccc
Q psy17575 297 DGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPN-GILHIGHAKAIN-INFGYAAAHNGICFLRYDDT-----NP---EKE 366 (832)
Q Consensus 297 ~~~~~~~~~~~~~~~hl~~~~~~v~tRFaPsPt-G~LHIGharaaL-~n~l~Ar~~gG~~iLRiDDT-----Dp---~r~ 366 (832)
.|.+......+.|.+.++. +++++.=-.=.|| |.|||||...++ .+| +.+.+|..+++-|-|- ++ ...
T Consensus 70 RG~i~~~~dl~~ll~~l~~-g~p~~vytG~dPTagsLHLGH~v~~~~l~~-lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~ 147 (451)
T 3foc_A 70 RGLFYAHRDFEEFLSYYEK-GHPIYIYTGRGPSSGALHLGHLLPFIFTKY-LQDAFKCYVVIQITDDEKFLRNRSLSYAE 147 (451)
T ss_dssp TTSEEEEESHHHHHHHHHT-TCCEEEEEEECCCSSCCBHHHHHHHHHHHH-HHHHHTCEEEEEECHHHHHHHCTTCCHHH
T ss_pred CCCccccccHHHHHHHHhc-CCCeEEEecCCCCCCCccHHHHHHHHHHHH-HHHccCceEEEEeeCcHHhhcccCCCHHH
Confidence 4666544444555555553 3344333334567 789999999998 888 5666677788887773 21 112
Q ss_pred cHHHHHHHHHHHHHcCCCcCc--ccccchhHH--HHHHHHHHHHHcCCccccCCCHHHHhc
Q psy17575 367 EEKFFTGIKDMVQWLGYKPYQ--ITHSSDYFH--QLYEWAVKLIKKGLAYVCHQKSDEMKG 423 (832)
Q Consensus 367 ~~e~~~~I~edL~WLGl~pd~--~~~qSd~~~--~~ye~A~~Li~~G~AY~C~Cs~eel~~ 423 (832)
..++...+..++-.+|++|++ +..||+++. .|++.+.+|- |..|-.++.+
T Consensus 148 I~~n~~~~~~~~lA~GlDpekt~i~~nSd~~~~~~~~~~l~~L~-------r~~Tv~~m~~ 201 (451)
T 3foc_A 148 VDSYTRENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVD-------RMLPISQLRA 201 (451)
T ss_dssp HHHHHHHHHHHHHTTTCCGGGEEEEEHHHHTTSTTHHHHHHHHH-------HTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCceEEEeCchhhcchhHHHHHHHHH-------hhCCHHHHHh
Confidence 334555566666667999874 677888753 3555544333 4455555544
No 60
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=95.16 E-value=0.039 Score=61.49 Aligned_cols=103 Identities=14% Similarity=0.178 Sum_probs=64.6
Q ss_pred CCcccccccHHHHHHhhhhcC-CceEEeeCCCCC-CcCchHHHHHHH-HHHHHHHhcCCEEEEeccCC-----Cc---cc
Q psy17575 297 DGYVVTEQTHDLLREHIKYTG-GKVRTRFPPEPN-GILHIGHAKAIN-INFGYAAAHNGICFLRYDDT-----NP---EK 365 (832)
Q Consensus 297 ~~~~~~~~~~~~~~~hl~~~~-~~v~tRFaPsPt-G~LHIGharaaL-~n~l~Ar~~gG~~iLRiDDT-----Dp---~r 365 (832)
.|.+......+.+.+.++... -.+.+=|. || |.|||||+..++ .+| +.+..|..+++-|-|- .+ ..
T Consensus 53 RG~i~~~~d~~~l~~~l~~g~~~~vy~G~~--PTa~~lHlGh~v~~~~~~~-lQ~~~~~~v~i~I~D~~~~~~r~~~~~e 129 (393)
T 3hv0_A 53 RNIFLSHRDFEKILDVYEKGELFYLYTGRG--PSSESLHVGHLVPFLFTKY-LQDTFKVPLVIQLTDDEKFIFKSNLTLE 129 (393)
T ss_dssp TTSEEEEESHHHHHHHHHTTCCCEEEEEEC--CSSSSCBSTTHHHHHHHHH-HHHHHCCCEEEEECHHHHHHHCTTCCHH
T ss_pred CCCccccCCHHHHHHHHhcCCCeEEEeCCC--CCCCCccHHHHHHHHHHHH-HHHhcCCCeEeeccChHHHhhccCCCHH
Confidence 466654444455555555321 23444444 67 679999999999 888 5566666778878663 11 11
Q ss_pred ccHHHHHHHHHHHHHcCCCcCc--ccccchhHHHHHHHH
Q psy17575 366 EEEKFFTGIKDMVQWLGYKPYQ--ITHSSDYFHQLYEWA 402 (832)
Q Consensus 366 ~~~e~~~~I~edL~WLGl~pd~--~~~qSd~~~~~ye~A 402 (832)
...++...+..++..+|++|++ +..||+....+|..+
T Consensus 130 ~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~~~~~~~~ 168 (393)
T 3hv0_A 130 ETHNYAYENMKDIIACGFDPELTFIFTNLEYIAELYPDI 168 (393)
T ss_dssp HHHHHHHHHHHHHHTTCCCTTTEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcceEEEECCHHHHHHHHHH
Confidence 2344555677788889999984 567888776554433
No 61
>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Probab=95.11 E-value=0.012 Score=68.84 Aligned_cols=162 Identities=12% Similarity=0.241 Sum_probs=32.1
Q ss_pred HHHHHHH-hCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHHHHHhhccC------CCccchHHHHHHH
Q psy17575 64 SMISAFL-SVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKS------QSSIHLPLLVKYI 136 (832)
Q Consensus 64 ~l~~lF~-~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy~lAtk~k~------~~~~~r~~l~~~I 136 (832)
+..+.|. ..||++.-|.-++.++.+ .-+.+++.. +. -++...+.|...-..++. -...+...|++.|
T Consensus 461 ~k~~r~~~~ygls~~~A~~l~~~~~~-d~FE~~v~~-~~----~pK~aanWL~~el~~L~~~i~~~~lt~e~la~LI~li 534 (633)
T 1zq1_C 461 AKVERYVKEYKLDRSLAQTLVDDERD-ELFEELVSM-GV----KPSLAASILVVVLKGLRKEVPIENVTDEHIREAFQLY 534 (633)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHTSTH-HHHHHHHHT-TC----STTHHHHHHHHTTCC----------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHhchHH-HHHHHHHHh-cC----CHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 4555566 599999999999998875 556555432 21 255555555443223331 2245677788888
Q ss_pred HhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHhhC
Q psy17575 137 VSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLL 216 (832)
Q Consensus 137 ~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vR~~L 216 (832)
.+|+|... .....++.+...+ ..+.++.-++.|.. .+|+++|+++|+++|++|.+.+.+.+ .-.+|.+||+|.+..
T Consensus 535 ~~gkIs~~-sAkevl~~~~~~~-~~~~~eIIee~gl~-QlSDeELe~iV~eVIaeNp~~V~~gk-~K~mG~lmGqVMK~t 610 (633)
T 1zq1_C 535 LEGKIAKE-AFEEIFKELARNP-SKSAREVAEEKGLT-LLSEEEVTRIIEEVIQQNIEVVKAKG-MGAMGLIMGRVMAKV 610 (633)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HcCcccHH-HHHHHHHHHhccC-CCCHHHHHHHhCcc-cCCHHHHHHHHHHHHHhChHHHhhcC-HhHHHHHHHHHHHHh
Confidence 98988762 3333333222221 24455666677763 57889999999999999887655532 236889999887644
Q ss_pred C-CCChhhhHHHHHHHHHhh
Q psy17575 217 K-WADGKYIKSEVDVQVLNL 235 (832)
Q Consensus 217 k-WAd~k~vK~~vD~~~l~l 235 (832)
+ =|||+.|.+.|.+.+...
T Consensus 611 kGKADpk~VnelLke~L~~~ 630 (633)
T 1zq1_C 611 RGKADGKLVSQIVRRKLQEI 630 (633)
T ss_dssp --------------------
T ss_pred CCCCCHHHHHHHHHHHHhhh
Confidence 3 599999988887766443
No 62
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=95.06 E-value=0.021 Score=63.14 Aligned_cols=95 Identities=16% Similarity=0.155 Sum_probs=62.5
Q ss_pred ceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC----Ccccc----cHHHHHHHHHHHHHcCCCcCc--c
Q psy17575 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDT----NPEKE----EEKFFTGIKDMVQWLGYKPYQ--I 388 (832)
Q Consensus 319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT----Dp~r~----~~e~~~~I~edL~WLGl~pd~--~ 388 (832)
.|.+=+. |||.|||||...++.+|.+ .+.|..+++=|-|. ++... ...+......++-.+|++|.+ +
T Consensus 72 ~v~sG~~--PTG~lHLGhyv~~~~~~~l-q~~~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt~i 148 (372)
T 3a04_A 72 AVLTGFM--PSGKFHFGHKLTVDQLIYL-QKNGFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTEF 148 (372)
T ss_dssp EEEEEEC--CCSCCBHHHHHHHHHHHHH-HHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTCEE
T ss_pred EEEeCcC--CCcHhHHHHHHHHHHHHHH-HhCCCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHcch
Confidence 3555565 4799999999976655544 45677888777663 32211 233444556677788999984 6
Q ss_pred cccchhHHHHHHHHHHHHHcCCccccCCCHHHHhc
Q psy17575 389 THSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKG 423 (832)
Q Consensus 389 ~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~ 423 (832)
..||++...+++.+..+ .|..+..++++
T Consensus 149 f~qS~~~~~~~~l~~~~-------~~~~~~~~~~~ 176 (372)
T 3a04_A 149 YFQTNRGTPYFRLIQLF-------SGKVTAAEMEA 176 (372)
T ss_dssp EEGGGSCHHHHHHHHHH-------TTSSCHHHHHH
T ss_pred hhhccchHHHHHHHHHH-------HhhhhHHHHhh
Confidence 88998777777765543 36666666654
No 63
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=94.86 E-value=0.11 Score=61.95 Aligned_cols=190 Identities=14% Similarity=0.083 Sum_probs=100.3
Q ss_pred HHHHHHhhhhcCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC-----Cccc----ccHHHHHHHHH
Q psy17575 306 HDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDT-----NPEK----EEEKFFTGIKD 376 (832)
Q Consensus 306 ~~~~~~hl~~~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-----Dp~r----~~~e~~~~I~e 376 (832)
.+.|++.|+. +.+.+.=-.=.|||.|||||.-...+++..-+..|..+++=|-|. ||.. ...+....+..
T Consensus 28 ~~eL~~~L~~-~~~~~vy~G~~PTg~lHLG~~v~~~~~~~~lQ~~G~~~~~lIaD~ha~~~d~~~~~~e~i~~~~~~~~~ 106 (690)
T 3p0j_A 28 ESELRNLIEK-KPLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIE 106 (690)
T ss_dssp HHHHHHHHHH-CTTEEEEEEECCCSCCBHHHHHHHHHHHHHHHHTTEEEEEEECCGGGGGGCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCceEEeeecCCCcchhHhhHHHHHHHHHHHHCCCcEEEEEeeeEEEecCCCcchHHHHHHHHHHHHH
Confidence 6677777764 333333333356789999993221223433345666766666553 3321 12234456777
Q ss_pred HHHHcCCCcCc--ccccchhHHH----HHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCc
Q psy17575 377 MVQWLGYKPYQ--ITHSSDYFHQ----LYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGL 450 (832)
Q Consensus 377 dL~WLGl~pd~--~~~qSd~~~~----~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~ 450 (832)
++..+|++|++ +..||+++.. |+.....+ .+.+|-.+|.+.... .|+
T Consensus 107 ~~lA~GlDp~k~~i~~qS~~v~~~~~l~~~~~~~i-------~~~~tv~~m~~~~~~--------------------~~r 159 (690)
T 3p0j_A 107 VWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDI-------GRQNTIARIKKCCTI--------------------MGK 159 (690)
T ss_dssp HHHHTTCCGGGEEEEEHHHHHTTSHHHHHHHHHHH-------HHTSCHHHHHTTC-------------------------
T ss_pred HHHHcCCChHHeEEEechHHHHhhHHHHHHHHHHH-------HhhCCHHHHHhhhhh--------------------hhh
Confidence 88889999984 6789986542 33333322 235565555532100 000
Q ss_pred ccCCCceEEEEecccCCCCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhc
Q psy17575 451 IDEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNAL 530 (832)
Q Consensus 451 ~~~g~~~lR~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL 530 (832)
... + +. .| ...||.-+ +.|=.+.+.+++..|.|-..+-..-.-+...+
T Consensus 160 ~~~----------------~-----i~------~g--~f~YPlLQ---AaDil~~~ad~vpvG~DQ~~~l~l~Rdla~r~ 207 (690)
T 3p0j_A 160 TEG----------------T-----LT------AA--QVLYPLMQ---CCDIFFLKADICQLGLDQRKVNMLAREYCDLI 207 (690)
T ss_dssp --C----------------C-----CC------CS--CSSHHHHH---HHHHHHTTCSEECCBGGGHHHHHHHHHHHHHT
T ss_pred ccC----------------C-----Cc------hh--hHhhHHHH---HHHHHhhCCCEEeccccHHHHHHHHHHHHHHh
Confidence 000 0 00 01 01144333 22222347889999999765544444566777
Q ss_pred CCC-CCCccccccc-CC-CCc-ccchhHH
Q psy17575 531 DIY-CPVQWEYGRL-NV-NYT-VVSKRKI 555 (832)
Q Consensus 531 ~~~-~P~~~ef~hL-~l-~gt-kLSKRk~ 555 (832)
|.. .|+......| .+ +|+ ||||+..
T Consensus 208 n~~~~p~~l~~~~l~gL~dG~~KMSKS~~ 236 (690)
T 3p0j_A 208 GRKLKPVILSHHMLAGLKQGQAKMSKSDP 236 (690)
T ss_dssp TCCCCCEEEEBCCCCCSSTTCSSCBTTBG
T ss_pred CCCCCceEeecCeeecCCCCCcCCCCCCC
Confidence 764 5654444444 34 675 9999975
No 64
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=94.39 E-value=0.11 Score=57.04 Aligned_cols=88 Identities=15% Similarity=0.133 Sum_probs=61.4
Q ss_pred HHHHHHhhhhc-CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC-----Ccc----cccHHHHHHHH
Q psy17575 306 HDLLREHIKYT-GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDT-----NPE----KEEEKFFTGIK 375 (832)
Q Consensus 306 ~~~~~~hl~~~-~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-----Dp~----r~~~e~~~~I~ 375 (832)
.+.|.+.|+.. .-.+.+=|-|| |.|||||...++.+|..-...|..+++=|-|. ||. ....+....+.
T Consensus 28 ~~~L~~~L~~~~~~~vy~G~~PT--g~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~ 105 (348)
T 2j5b_A 28 LDRLKQLVDSGRIFTAYNGFEPS--GRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFI 105 (348)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCC--SSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEeccCCC--CCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHH
Confidence 56788888762 22355666555 89999996677788877777788888777662 431 23345667777
Q ss_pred HHHHHcCCCcC--cccccchhH
Q psy17575 376 DMVQWLGYKPY--QITHSSDYF 395 (832)
Q Consensus 376 edL~WLGl~pd--~~~~qSd~~ 395 (832)
+++..+|++|. .+..||+.+
T Consensus 106 ~~~la~Gldp~k~~i~~qs~~~ 127 (348)
T 2j5b_A 106 EVFKACGINLDGTRFIWASEFI 127 (348)
T ss_dssp HHHHHTTCCGGGEEEEEHHHHH
T ss_pred HHHHHhcCCccceEEEECCHhh
Confidence 78778899998 467888854
No 65
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=93.98 E-value=0.082 Score=58.82 Aligned_cols=93 Identities=12% Similarity=0.122 Sum_probs=62.5
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC-------CcccccHHHHHHHHHHHHHcCCCcCc--ccc
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDT-------NPEKEEEKFFTGIKDMVQWLGYKPYQ--ITH 390 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-------Dp~r~~~e~~~~I~edL~WLGl~pd~--~~~ 390 (832)
|.+=| .|||.|||||..-++.||..-+. |..+++=|-|. ||+. ..+....+..++..+|++|++ +..
T Consensus 38 i~sG~--~PTG~lHLGhyvGal~~~~~LQ~-~~~~~~~IaD~hAlt~~~~~~~-lr~~~~~~aa~~lA~GlDp~kt~if~ 113 (388)
T 3prh_A 38 IFSGI--QPSGSVTLGNYIGAMKQFVELQH-DYNSYFCIVDQHAITVPQDRLE-LRKNIRNLAALYLAVGLDPEKATLFI 113 (388)
T ss_dssp EEEEE--CCCSCCBHHHHHHTHHHHHHTTT-TSEEEEEECHHHHTTSCCCHHH-HHHHHHHHHHHHHHTTCCTTTEEEEE
T ss_pred EEEee--CCCCcchHHHHHHHHHHHHHHHc-cCcEEEEEecceeeecCCCHHH-HHHHHHHHHHHHHHhCCChhHeEEEe
Confidence 44444 46799999999999998865443 66776666552 3322 334555677777789999984 678
Q ss_pred cchhHHHHHHHHHHHHHcCCccccCCCHHHHhcc
Q psy17575 391 SSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGF 424 (832)
Q Consensus 391 qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~ 424 (832)
||+..+ +.+++-. +.|..+-.++.++
T Consensus 114 qS~v~~-~~el~w~-------l~~~~~~~~L~R~ 139 (388)
T 3prh_A 114 QSEVPA-HAQAGWM-------MQCVAYIGELERM 139 (388)
T ss_dssp GGGSTH-HHHHHHH-------HHTTSCHHHHHTT
T ss_pred cccccc-hHHHHHH-------HHhhccHHHHHhh
Confidence 999753 4454433 3478887777653
No 66
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=93.72 E-value=0.28 Score=55.11 Aligned_cols=220 Identities=15% Similarity=0.180 Sum_probs=116.2
Q ss_pred HHHHHHhhhhcCCceEEeeCCCCCCc-CchHHHHHHHHHHHHHHhcCCEEEEeccC-C----Ccc-----c------ccH
Q psy17575 306 HDLLREHIKYTGGKVRTRFPPEPNGI-LHIGHAKAININFGYAAAHNGICFLRYDD-T----NPE-----K------EEE 368 (832)
Q Consensus 306 ~~~~~~hl~~~~~~v~tRFaPsPtG~-LHIGharaaL~n~l~Ar~~gG~~iLRiDD-T----Dp~-----r------~~~ 368 (832)
.+.|.+.|+...-.+.+=|- |||. |||||.. ++.+|..-+..|-++++=|-| | ||. | +..
T Consensus 21 ~~~L~~~L~~~~~~iy~G~d--PTg~sLHlGh~v-~l~~~~~lQ~~G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i~ 97 (420)
T 1jil_A 21 EQGIEDLLNKEQVTLYCGAD--PTADSLHIGHLL-PFLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVD 97 (420)
T ss_dssp HHHHHHHHHHSCCEEEEEEC--CSSSSCBHHHHH-HHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHH
T ss_pred HHHHHHHHcCCCCEEEEeeC--CCCCCccHHHHH-HHHHHHHHHHCCCcEEEEEcCceeEecCCCccccccccCCHHHHH
Confidence 56677888643333445554 6799 9999988 688887777777777776655 2 453 1 123
Q ss_pred HHHHHHHHHHHHcCCCc---C--cccccchhHHH--HHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHH
Q psy17575 369 KFFTGIKDMVQWLGYKP---Y--QITHSSDYFHQ--LYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVK 441 (832)
Q Consensus 369 e~~~~I~edL~WLGl~p---d--~~~~qSd~~~~--~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~ 441 (832)
+....|.+.+..+ ++| + .+..||+.+.. ++++ |.. +-|+.|-.+|.+... ...
T Consensus 98 ~n~~~~~~~~~~~-ld~~~~~k~~i~~ns~w~~~~~~l~~---l~~----~~~~~tv~~m~~~~~---------~k~--- 157 (420)
T 1jil_A 98 KNIEGISKQMHNI-FEFGTDHGAVLVNNRDWLGQISLISF---LRD----YGKHVGVNYMLGKDS---------IQS--- 157 (420)
T ss_dssp HHHHHHHHHHHHH-SCCSSSSSCEEEETHHHHTTCCHHHH---HHH----TGGGCCHHHHHTCGG---------GHH---
T ss_pred HHHHHHHHHHHHH-hCCCCCCceEEEEchhhhhhccHHHH---HHH----HhccccHHHHhcchh---------hhh---
Confidence 4556666655554 555 4 35677776542 2222 222 236667666664210 000
Q ss_pred HHHHHHcCcccCCCceEEEEecccCCCCCceEEEeeeCCCCCCCCceeEee---ccceeeeeecCCCCcceeeecccccc
Q psy17575 442 LFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYP---TYDYTHCLCDSIEHITHSLCTKEFQS 518 (832)
Q Consensus 442 ~f~~m~~g~~~~g~~~lR~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~~i~P---tY~fA~~VdD~l~gITHvlRg~E~~~ 518 (832)
++ .++- .. + .+ .|| +|||-+.-. -.+.++++-|.|-..
T Consensus 158 ---r~-----~~~i-------s~--------------------~-ef-~YplLQaaD~l~l~~--~~~~~i~~gG~DQ~~ 198 (420)
T 1jil_A 158 ---RL-----EHGI-------SY--------------------T-EF-TYTILQAIDFGHLNR--ELNCKIQVGGSDQWG 198 (420)
T ss_dssp ---HH-----TTTC-------CH--------------------H-HH-HHHHHHHHHHHHHHH--HHCEEEEEEEGGGHH
T ss_pred ---hc-----cCCc-------ch--------------------H-HH-HHHHHHHHHHHHHhc--cCCCcEEeccHHHHH
Confidence 00 0000 00 0 00 022 233221100 016788888999766
Q ss_pred cchhHHHHHHhc-CCCCCCccccccc-CCCCcccchhHHHHhhhcCccCCCCCc---chhhHHHHHHcCCCHHHHHHHHH
Q psy17575 519 RRSSYYWLCNAL-DIYCPVQWEYGRL-NVNYTVVSKRKIAKLIEENIVNDWDDP---RLFTLTALRRRGFPPEAINKFCA 593 (832)
Q Consensus 519 ~~~~~~~L~~aL-~~~~P~~~ef~hL-~l~gtkLSKRk~~~lv~~g~v~gwdDP---r~~tL~~lrrrG~~PeAI~nfl~ 593 (832)
+-..=.-|...+ +..+|+......| .++|+||||+.. +.| |=|+ -...+....++ .+-..+.+|+.
T Consensus 199 ni~~grdla~r~~~~~~~~~l~~pll~~ldG~KMSKS~~------naI--~L~d~~tsp~~i~~ki~~-~~D~~v~~~l~ 269 (420)
T 1jil_A 199 NITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSES------GAV--WLDAEKTSPYEFYQFWIN-QSDEDVIKFLK 269 (420)
T ss_dssp HHHHHHHHHHHHHCCCCCEEEEECCCBCTTSCBTTBCSS------SBC--BSSTTTSCHHHHHHHHHT-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeeEeecccccCCccccccCCCC------CeE--ecCCCCCCHHHHHHHHhc-CCchhHHHHHH
Confidence 655555567777 6655544443333 457999999974 333 2222 12234443332 44445667766
Q ss_pred HhC
Q psy17575 594 RMG 596 (832)
Q Consensus 594 ~lG 596 (832)
.+-
T Consensus 270 ~~t 272 (420)
T 1jil_A 270 YFT 272 (420)
T ss_dssp HHC
T ss_pred HHH
Confidence 554
No 67
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=93.16 E-value=0.11 Score=56.74 Aligned_cols=95 Identities=15% Similarity=0.104 Sum_probs=60.7
Q ss_pred ceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC----Ccc--cccHHHHHHHHHHHHHcCCCcCc--ccc
Q psy17575 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDT----NPE--KEEEKFFTGIKDMVQWLGYKPYQ--ITH 390 (832)
Q Consensus 319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT----Dp~--r~~~e~~~~I~edL~WLGl~pd~--~~~ 390 (832)
.|.+=|- |||.|||||...++-+|..-+. +..+++=|-|. ++. ....+....+..++..+|++|++ +..
T Consensus 8 ~v~sG~~--PTG~lHLGhy~g~l~~~~~lQ~-~~~~~~~iaD~ha~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i~~ 84 (341)
T 3sz3_A 8 IVLSGVQ--PSGELSIGNYLGALRQWQQMQD-DYDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDPKKSTLFV 84 (341)
T ss_dssp EEEEEEC--SSSCCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEE
T ss_pred EEEeCcC--CCCcccHHHHHHHHHHHHHHHh-cCeEEEEEecceeEcCCCCHHHHHHHHHHHHHHHHHcCCChhhcEEEe
Confidence 3555555 5699999999988888853333 35555555542 221 22345566677778889999984 688
Q ss_pred cchhHHHHHHHHHHHHHcCCccccCCCHHHHhcc
Q psy17575 391 SSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGF 424 (832)
Q Consensus 391 qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~ 424 (832)
||+..+ ..+.+-.| .|.++.-+++++
T Consensus 85 qS~v~~-~~el~~~l-------~~~~~~~~l~R~ 110 (341)
T 3sz3_A 85 QSHVPE-HAQLGWVL-------NCYTQMGELSRM 110 (341)
T ss_dssp GGGCTH-HHHHHHHH-------HTTSCHHHHHTC
T ss_pred ccchhh-hHHHHHHH-------HhhccHHHHHHH
Confidence 998653 33433323 478887777753
No 68
>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Probab=92.98 E-value=0.02 Score=66.99 Aligned_cols=159 Identities=14% Similarity=0.189 Sum_probs=28.1
Q ss_pred HHHHHHHH-hCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHHHHHhhccC-------CCccchHHHHH
Q psy17575 63 DSMISAFL-SVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKS-------QSSIHLPLLVK 134 (832)
Q Consensus 63 ~~l~~lF~-~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy~lAtk~k~-------~~~~~r~~l~~ 134 (832)
++..+.|. ..||++.-|.-++.++.+ .-+.+++.. +. -+|...+.|......++. -...+...|++
T Consensus 448 ~~k~~r~~~~ygls~~~A~~l~~~~~~-~~fe~~~~~-~~----~~K~aaNWL~~el~~Ln~~~i~i~~lt~e~la~LI~ 521 (619)
T 2d6f_C 448 SEKKERIMRDYGLSEDLASQLVKRNLV-DEFEALTEF-RV----DTTVIASLLAYTLRELRREGHDVDGLGLDELRDAIK 521 (619)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHTTCT-TTC-------------CCHHHHHTTTTHHHHHTC------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHcCcHH-HHHHHHHHh-cC----CHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHHHH
Confidence 34556666 599999999999888774 555555432 11 244444443332233322 23456778889
Q ss_pred HHHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHh
Q psy17575 135 YIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRT 214 (832)
Q Consensus 135 ~I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vR~ 214 (832)
.|.+|++... ....-++-+.+. .-+..+.-++.|.. .+|.++|+++|+++|++|.+.+.+.+ .-.+|.+||+|.+
T Consensus 522 li~~gkIs~e-sAkevl~~L~e~--e~~~~eIIee~gl~-QlSDeELe~iV~eVIaeNp~~V~~gk-~K~mG~lmGqVMK 596 (619)
T 2d6f_C 522 LLEVGKISKD-ALRDIVACMADE--GLAAEDAARKLNLL-LLAEDEIESIIQEIVEGNLDMISERG-MGAMGPLMGQAMG 596 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHcCchhHH-HHHHHHHHHHhc--CCCHHHHHHHhCcc-cCCHHHHHHHHHHHHHhChHHHhhcC-HhHHHHHHHHHHH
Confidence 9998988762 333222222221 24556666666664 57889999999999999877655532 2368899998876
Q ss_pred hCC-CCChhhhHHHHHHHH
Q psy17575 215 LLK-WADGKYIKSEVDVQV 232 (832)
Q Consensus 215 ~Lk-WAd~k~vK~~vD~~~ 232 (832)
..+ =|||+.|.+.|.+.+
T Consensus 597 ~tkGKADpk~VnelLke~L 615 (619)
T 2d6f_C 597 RLRGRADGKVVNRILREKI 615 (619)
T ss_dssp -------------------
T ss_pred HhcCCCCHHHHHHHHHHHH
Confidence 444 599998888776654
No 69
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=92.83 E-value=0.14 Score=57.34 Aligned_cols=98 Identities=17% Similarity=0.226 Sum_probs=59.6
Q ss_pred CCcccccccHHHHHHhhhhcCCceEEeeCCCCCC-cCchHHHHHH-HHHHHHHHhcCCEEEEeccCC-----Cc--cccc
Q psy17575 297 DGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNG-ILHIGHAKAI-NINFGYAAAHNGICFLRYDDT-----NP--EKEE 367 (832)
Q Consensus 297 ~~~~~~~~~~~~~~~hl~~~~~~v~tRFaPsPtG-~LHIGharaa-L~n~l~Ar~~gG~~iLRiDDT-----Dp--~r~~ 367 (832)
.|.+......+.+.+.++. +++++.=..=.||| .|||||...+ +.+| +.+.+|..+++-|-|. ++ ....
T Consensus 80 RG~i~~~~d~~~ll~~~~~-~~p~~vy~G~~PTg~~lHLGh~v~~~~~~~-lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i 157 (406)
T 3tze_A 80 RGIVFAHRDFNLLLDEIAN-NRPFYLYTGRGPSSKTMHIGHTIPFLLCKY-MQDAFKIRLVIQITDDEKFLWKSMRLEDA 157 (406)
T ss_dssp TTSEEEEESHHHHHHHHHT-TCCEEEEEEECCCSSCCBGGGHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHSSCCHHHH
T ss_pred CCCeeccccHHHHHHHHhc-CCCeEEEEeeCCCCCcccHHHHHHHHHHHH-HHHhcCCcEEEEeeChHHHcCCCCCHHHH
Confidence 3666543333333344432 34444433445788 7999999998 7888 6666677777766663 11 1123
Q ss_pred HHHHHHHHHHHHHcCCCcCc--ccccchhHH
Q psy17575 368 EKFFTGIKDMVQWLGYKPYQ--ITHSSDYFH 396 (832)
Q Consensus 368 ~e~~~~I~edL~WLGl~pd~--~~~qSd~~~ 396 (832)
.++...+..++-.+|++|++ +..||+...
T Consensus 158 ~~~~~~~~~~~lA~GlDp~k~~i~~qs~~~~ 188 (406)
T 3tze_A 158 MAYGRENIKDIVTLGFDPKLTYIFSNVEASH 188 (406)
T ss_dssp HHHHHHHHHHHHTTTCCGGGEEEEEHHHHGG
T ss_pred HHHHHHHHHHHHHcCCCccceEEEeccHhHH
Confidence 45556677777788999974 455665443
No 70
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=92.04 E-value=0.48 Score=52.43 Aligned_cols=88 Identities=16% Similarity=0.110 Sum_probs=53.7
Q ss_pred HHHHHHhhhhc-CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC-----Ccc-cc---cHHHHHHHH
Q psy17575 306 HDLLREHIKYT-GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDT-----NPE-KE---EEKFFTGIK 375 (832)
Q Consensus 306 ~~~~~~hl~~~-~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-----Dp~-r~---~~e~~~~I~ 375 (832)
.+.|++.|+.. .-.+.+=|. |||.|||||.--..++|..-...|..+++=|-|. ||. +. .......+.
T Consensus 44 ~~~L~~~L~~~~~~~iy~G~~--PTg~lHlG~gvl~~~~~~~lQ~~G~~~~~lIaD~ha~i~d~~~~~~~~i~~~~~~~~ 121 (373)
T 3vgj_A 44 PDELRVKLLLKRKLICYDGFE--PSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKKVGSYFI 121 (373)
T ss_dssp HHHHHHHHHHCSSCEEEEEEC--CCSSCBHHHHHHHHHHHHHHHTTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEeCCC--CCCCceehhhHHHHHHHHHHHHCCCcEEEEEecceeEecCCCCCCHHHHHHHHHHHH
Confidence 67778888752 223555555 5689999993212223333345677766665552 331 21 234455667
Q ss_pred HHHHHcCCCcCc--ccccchhH
Q psy17575 376 DMVQWLGYKPYQ--ITHSSDYF 395 (832)
Q Consensus 376 edL~WLGl~pd~--~~~qSd~~ 395 (832)
.++..+|++|++ +.+||+..
T Consensus 122 ~~~~a~G~dp~k~~i~~~S~~~ 143 (373)
T 3vgj_A 122 EVWKSCGMNMENVQFLWASEEI 143 (373)
T ss_dssp HHHHHTTCCSTTEEEEEHHHHH
T ss_pred HHHHHcCCChhheEEEeChhHH
Confidence 788889999984 67899876
No 71
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=91.90 E-value=0.2 Score=54.96 Aligned_cols=92 Identities=17% Similarity=0.103 Sum_probs=59.2
Q ss_pred eEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC-------CcccccHHHHHHHHHHHHHcCCCcCc--ccc
Q psy17575 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDT-------NPEKEEEKFFTGIKDMVQWLGYKPYQ--ITH 390 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-------Dp~r~~~e~~~~I~edL~WLGl~pd~--~~~ 390 (832)
+.+=|. |||.|||||..-++-+|..- +.+..+++=|-|. ||+ ...+....+..++..+|++|++ +..
T Consensus 18 i~sG~~--PTG~lHLGh~vg~l~~~~~l-Q~~~~~~~~iaD~hA~t~~~~~~-~~~~~~~~~~~~~lA~GlDp~k~~if~ 93 (346)
T 3n9i_A 18 VFSGAQ--PSGELTIGNYMGALRQWVQM-QDDYDCIYCIVDLHAITARQDPA-LLRKRTLDTLALYLACGIDPKKSTIFV 93 (346)
T ss_dssp EEEEEC--SCSCCBHHHHHHTHHHHHTT-TTTSEEEEEECHHHHTTSCCCHH-HHHHHHHHHHHHHHHHTCCTTTSEEEE
T ss_pred EEECcC--CCCcccHHHHHHHHHHHHHH-HhhCcEEEEEecceeecCCCCHH-HHHHHHHHHHHHHHHcCCCccceEEEe
Confidence 445554 56999999999888888432 3345666555542 332 2335556677777789999985 688
Q ss_pred cchhHHHHHHHHHHHHHcCCccccCCCHHHHhc
Q psy17575 391 SSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKG 423 (832)
Q Consensus 391 qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~ 423 (832)
||+..+ ..+.+-- +.|.++.-++.+
T Consensus 94 qS~v~~-~~el~~~-------l~~~~~~~~l~R 118 (346)
T 3n9i_A 94 QSHVPE-HSQLSWA-------LNCYTYFGELSR 118 (346)
T ss_dssp GGGCTH-HHHHHHH-------HHTTSBHHHHHT
T ss_pred cccccc-chHHHHH-------HHHHhhHHHHHH
Confidence 998654 3333322 347777777764
No 72
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=91.25 E-value=0.34 Score=55.25 Aligned_cols=100 Identities=11% Similarity=0.091 Sum_probs=60.0
Q ss_pred ccCCcccccccHHHHHHhhhhcCCceEEeeCCCCC-CcCchHHHHHHH-HHHHHHHhcCCEEEEeccC-C------Cccc
Q psy17575 295 KSDGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPN-GILHIGHAKAIN-INFGYAAAHNGICFLRYDD-T------NPEK 365 (832)
Q Consensus 295 ~~~~~~~~~~~~~~~~~hl~~~~~~v~tRFaPsPt-G~LHIGharaaL-~n~l~Ar~~gG~~iLRiDD-T------Dp~r 365 (832)
...|.+......+.+.+.++. +.+++.=-.=.|| |.|||||...++ .+| +-+.+|...++=|-| | -...
T Consensus 132 ~~RG~i~~~~d~~~l~~~l~~-~~~~~vy~G~dPTag~LHLGh~v~~~~~~~-lQ~~~g~~~iilI~D~~a~igd~lt~e 209 (477)
T 1r6t_A 132 LRRGIFFSHRDMNQVLDAYEN-KKPFYLYTGRGPSSEAMHVGHLIPFIFTKW-LQDVFNVPLVIQMTDDEKYLWKDLTLD 209 (477)
T ss_dssp HHTTSEEEEESHHHHHHHHHT-TCCEEEEEEECCCTTCCBGGGHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHSSCCHH
T ss_pred HhCCCccccCCHHHHHHHHhc-CCCcEEEEcccCCCCCccHHHHHHHHHHHH-HHHHhCCcEEEEEecceeeecCCCCHH
Confidence 344776644444445555653 3333332333467 789999999988 677 444477765554444 2 1122
Q ss_pred ccHHHHHHHHHHHHHcCCCcCc--ccccchhHH
Q psy17575 366 EEEKFFTGIKDMVQWLGYKPYQ--ITHSSDYFH 396 (832)
Q Consensus 366 ~~~e~~~~I~edL~WLGl~pd~--~~~qSd~~~ 396 (832)
...++...++.++-.+|++|.+ +..||++..
T Consensus 210 ~i~~n~~~~~~~~lA~GlDp~k~~i~~nsd~~~ 242 (477)
T 1r6t_A 210 QAYGDAVENAKDIIACGFDINKTFIFSDLDYMG 242 (477)
T ss_dssp HHHHHHHHHHHHHHTTCCCTTSEEEEEHHHHGG
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEechhhhc
Confidence 3445556667777778999984 678888764
No 73
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=90.87 E-value=0.044 Score=66.31 Aligned_cols=156 Identities=15% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHhCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHH-HHHhhcc----CCCccchHHHHHHHHhCCC
Q psy17575 67 SAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLY-HLASKIK----SQSSIHLPLLVKYIVSKAL 141 (832)
Q Consensus 67 ~lF~~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy-~lAtk~k----~~~~~~r~~l~~~I~~gkl 141 (832)
+.|...||++.-|.-++.++.++.-+.++.. +. -++...+.|. .|...++ +-...+...|++.|.+|+|
T Consensus 686 ~R~~eyGLs~~dA~vL~~~~~ladyFE~v~~--~~----~pk~aANWl~~eL~~~Ln~~~~~itp~~LaeLi~LI~~g~I 759 (851)
T 2hz7_A 686 TRLLGLGASEGDARTIARDPALLAFVGGAAP--GD----TFAQVASWTVNELVAGLRAGEVKVRAADLAPLAEGVASGQL 759 (851)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHcCCCHHHHHHHHCCHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCc
Confidence 3367899999999999999999888877732 21 2445554443 3344443 2345788899999999999
Q ss_pred CCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcc--cccchhhhHHHHHh-hCCC
Q psy17575 142 DSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKR--YRYNLGLVMQEVRT-LLKW 218 (832)
Q Consensus 142 kt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~r--y~~n~g~ll~~vR~-~LkW 218 (832)
.+. .....++-+-+. .-+.++.-++.|...+-.+++|+++|.++|++|.+.+.+-| -.-.+|-|+|+|=+ .===
T Consensus 760 S~k-~AK~Vl~~m~~~--~~~p~eIVee~GL~qISD~~eLe~iV~eVIa~Np~~Ve~yr~GK~ka~gfLVGQVMK~tkGK 836 (851)
T 2hz7_A 760 SAR-IAREALARAAAS--GDAPLTIIEREGLNAGLSAEALQQVVAQVIAANPDKAEAYRGGKTALLGFFTGQVMRATAGK 836 (851)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHH-HHHHHHHHHHhc--CCCHHHHHHHcCCCcCCCHHHHHHHHHHHHHHCHHHHHHHHcccHhHHHHHHHHHHHHhCCC
Confidence 874 455556555433 24677788888887544455899999999999988776521 11235666666633 2224
Q ss_pred CChhhhHHHHHHH
Q psy17575 219 ADGKYIKSEVDVQ 231 (832)
Q Consensus 219 Ad~k~vK~~vD~~ 231 (832)
|||+.|.+.|.+.
T Consensus 837 AnP~~VnelL~ek 849 (851)
T 2hz7_A 837 ADPQALAAALKDA 849 (851)
T ss_dssp -------------
T ss_pred CCHHHHHHHHHHH
Confidence 8888887776553
No 74
>1ng6_A Hypothetical protein YQEY; structural genomics, domain GATB/YQEY, PFAM02637, DUF186, PSI, protein structure initiative; 1.40A {Bacillus subtilis} SCOP: a.182.1.1
Probab=90.57 E-value=0.86 Score=44.00 Aligned_cols=52 Identities=25% Similarity=0.376 Sum_probs=41.2
Q ss_pred EeCHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHhhCC-CCChhhhHHHHHHH
Q psy17575 175 IVTSEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLK-WADGKYIKSEVDVQ 231 (832)
Q Consensus 175 ~VT~EqI~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vR~~Lk-WAd~k~vK~~vD~~ 231 (832)
.+|+++|+++|.++|+++.+ .+ .-.+|.+||.|.+.++ =|||+.|...|.+.
T Consensus 94 qlsd~el~~iV~evi~~~~~----~g-~k~~G~vmG~vmk~~~GkAD~~~v~~lvk~~ 146 (148)
T 1ng6_A 94 QLSEEELRTIVNETIAEVGA----SS-KADMGKVMGAIMPKVKGKADGSLINKLVSSQ 146 (148)
T ss_dssp CCCHHHHHHHHHHHHHHTTC----CS-GGGHHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCcc----cC-HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 68999999999999999765 23 2379999999977443 49999988877653
No 75
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=89.43 E-value=0.66 Score=52.38 Aligned_cols=99 Identities=11% Similarity=0.112 Sum_probs=59.5
Q ss_pred cCCcccccccHHHHHHhhhhcCCceEEeeCCCCC-CcCchHHHHHHH-HHHHHHHhcCCEEEEeccC-C----C--cccc
Q psy17575 296 SDGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPN-GILHIGHAKAIN-INFGYAAAHNGICFLRYDD-T----N--PEKE 366 (832)
Q Consensus 296 ~~~~~~~~~~~~~~~~hl~~~~~~v~tRFaPsPt-G~LHIGharaaL-~n~l~Ar~~gG~~iLRiDD-T----D--p~r~ 366 (832)
..|.+......+.+.+.++. +.+++.=-.=.|| |.|||||...++ .+| +-+.+|...++=|-| | | ....
T Consensus 86 ~RG~i~~~~d~~~l~~~l~~-~~~~~vy~G~dPTag~LHLGh~v~~~~~~~-lQ~~~G~~~iilIgD~ta~igd~lt~e~ 163 (437)
T 1r6u_A 86 RRGIFFSHRDMNQVLDAYEN-KKPFYLYTGRGPSSEAMHVGHLIPFIFTKW-LQDVFNVPLVIQMTDDEKYLWKDLTLDQ 163 (437)
T ss_dssp HHTSEEEEESHHHHHHHHTT-TCCEEEEEEECCCSSCCBHHHHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHSSCCHHH
T ss_pred hCCCccCCCCHHHHHHHHhc-CCCcEEEEcccCCCCCccHHHHHHHHHHHH-HHHHhCCcEEEEEecceeeecCCCCHHH
Confidence 34776644444445555653 3333332333467 789999999987 676 444477766555544 2 1 1223
Q ss_pred cHHHHHHHHHHHHHcCCCcCc--ccccchhHH
Q psy17575 367 EEKFFTGIKDMVQWLGYKPYQ--ITHSSDYFH 396 (832)
Q Consensus 367 ~~e~~~~I~edL~WLGl~pd~--~~~qSd~~~ 396 (832)
..++...+..++-.+|++|.+ +..||+...
T Consensus 164 i~~n~~~~~~~~lA~GlDp~kt~i~~nSd~~~ 195 (437)
T 1r6u_A 164 AYGDAVENAKDIIACGFDINKTFIFSDLDYMG 195 (437)
T ss_dssp HHHHHHHHHHHHHTTTCCGGGEEEEEHHHHGG
T ss_pred HHHHHHHHHHHHHHhCCCccceEEEechhhhh
Confidence 445555667777778999884 678888764
No 76
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=88.29 E-value=0.3 Score=52.86 Aligned_cols=87 Identities=15% Similarity=0.202 Sum_probs=53.5
Q ss_pred HHHHHHhhhhcCCceEEeeCCCCCCc-CchHHHHHHHHHHHHHHhcCCEEEEeccCC-----Ccc-----cc------cH
Q psy17575 306 HDLLREHIKYTGGKVRTRFPPEPNGI-LHIGHAKAININFGYAAAHNGICFLRYDDT-----NPE-----KE------EE 368 (832)
Q Consensus 306 ~~~~~~hl~~~~~~v~tRFaPsPtG~-LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-----Dp~-----r~------~~ 368 (832)
.+.|.+.|+...-.+.+=|- |||. |||||.. ++.+|..-+..|..+++=|=|. ||. |. ..
T Consensus 22 ~~~l~~~l~~~~~~vy~G~~--PTg~slHlGh~l-~l~~~~~lQ~~g~~~~~~i~D~~a~~~dp~g~~~~R~~l~~e~i~ 98 (322)
T 2yxn_A 22 EEALAERLAQGPIALVCGFD--PTADSLHLGHLV-PLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQ 98 (322)
T ss_dssp HHHHHHHHHHSCCEEEEEEC--CSSSSCBHHHHH-HHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHH
T ss_pred HHHHHHHHcCCCCEEEEeec--CCCCcccHHHHH-HHHHHHHHHHcCCcEEEEEccceeeecCCCCcccccccCCHHHHH
Confidence 56677777733334555555 5699 9999988 7888887777788877777662 332 22 22
Q ss_pred HHHHHHHHHHHH---cCCCcCc--ccccchhH
Q psy17575 369 KFFTGIKDMVQW---LGYKPYQ--ITHSSDYF 395 (832)
Q Consensus 369 e~~~~I~edL~W---LGl~pd~--~~~qSd~~ 395 (832)
+..+.|.+.+.. +|++|++ +..||+..
T Consensus 99 ~n~~~~~~~~~~~la~g~dp~k~~i~~qs~w~ 130 (322)
T 2yxn_A 99 EWVDKIRKQVAPFLDFDCGENSAIAANNYDWF 130 (322)
T ss_dssp HHHHHHHHHHGGGSCSSSGGGCCEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEecchhh
Confidence 333333444332 3777764 56777643
No 77
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=86.92 E-value=1.4 Score=52.50 Aligned_cols=86 Identities=10% Similarity=0.021 Sum_probs=57.7
Q ss_pred eEEeeCCCCCCcCchHHHHHHHH--HHHHHHhcCCEEEEeccCC-----Ccc-c---ccHHHHHHHHHHHHHcCCCcC-c
Q psy17575 320 VRTRFPPEPNGILHIGHAKAINI--NFGYAAAHNGICFLRYDDT-----NPE-K---EEEKFFTGIKDMVQWLGYKPY-Q 387 (832)
Q Consensus 320 v~tRFaPsPtG~LHIGharaaL~--n~l~Ar~~gG~~iLRiDDT-----Dp~-r---~~~e~~~~I~edL~WLGl~pd-~ 387 (832)
.-+=|-| |||-|||||+..++. +-..--..|+..++=|-|- |+. . ...++......++..||+++. +
T Consensus 383 l~~~~~p-s~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG~d~k~~ 461 (690)
T 3p0j_A 383 HACMWMP-ALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLPSSVK 461 (690)
T ss_dssp EEEEECC-CCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHTCCTTSE
T ss_pred ceEEecC-CCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCeE
Confidence 3345889 999999999998876 4333334588888888775 331 1 223455566778889999864 5
Q ss_pred ccccchhHHH----HHHHHHHHH
Q psy17575 388 ITHSSDYFHQ----LYEWAVKLI 406 (832)
Q Consensus 388 ~~~qSd~~~~----~ye~A~~Li 406 (832)
+.++|+.+.. |+..+.+|-
T Consensus 462 fv~~S~~~~~~~~~~~~~vi~la 484 (690)
T 3p0j_A 462 IVTENEVILGNCDDFWVSVIGIA 484 (690)
T ss_dssp EEEHHHHHHHTHHHHHHHHHHHH
T ss_pred EEECCchhccchhhHHHHHHHHH
Confidence 7888985543 555554444
No 78
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=79.37 E-value=5.6 Score=44.21 Aligned_cols=52 Identities=13% Similarity=0.123 Sum_probs=36.4
Q ss_pred HHHHHHhhhhcCCceEEeeCCCCCCc-CchHHHHHHHHHHHHHHhcCCEEEEeccC
Q psy17575 306 HDLLREHIKYTGGKVRTRFPPEPNGI-LHIGHAKAININFGYAAAHNGICFLRYDD 360 (832)
Q Consensus 306 ~~~~~~hl~~~~~~v~tRFaPsPtG~-LHIGharaaL~n~l~Ar~~gG~~iLRiDD 360 (832)
.+.|++.+....-.+.+=|- |||. |||||.. ++.+|..-...|-.++.=|=|
T Consensus 53 ~e~l~~ll~~~~~~vy~G~d--PTg~sLHlGhlv-~l~~l~~lQ~~G~~~~~lIgD 105 (392)
T 1y42_X 53 KEHIAELMRTRRIGAYVGID--PTAPSLHVGHLL-PLMPLFWMYLEGYKAFTLIGG 105 (392)
T ss_dssp HHHHHHHHHHCCCEEEEEEC--CCSSSCBGGGHH-HHHHHHHHHHHTCEEEEEECT
T ss_pred HHHHHHHHcCCCCEEEEeec--CCCCCccHHHHH-HHHHHHHHHHcCCcEEEEEcC
Confidence 56788877643334555555 5699 9999998 688887666667776666544
No 79
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=77.75 E-value=2.7 Score=50.83 Aligned_cols=98 Identities=16% Similarity=0.059 Sum_probs=60.7
Q ss_pred cceeeecccccccc-hhHHHHHHhc-CCCCCC-ccccccc-CCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcC
Q psy17575 507 ITHSLCTKEFQSRR-SSYYWLCNAL-DIYCPV-QWEYGRL-NVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRG 582 (832)
Q Consensus 507 ITHvlRg~E~~~~~-~~~~~L~~aL-~~~~P~-~~ef~hL-~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG 582 (832)
++.-+=|.|+...- ....++..++ |..++. .|-.+++ ..+|.|||||+++ .| +...+.+ .
T Consensus 545 ~dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GN------vV---------~p~dli~-~ 608 (821)
T 1ile_A 545 ADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGN------VV---------DPWDIIR-K 608 (821)
T ss_dssp BSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTC------CC---------CHHHHHT-T
T ss_pred cccccchhhhhccHHHHHHHHHHHhcCCCCcceEEEEeeEECCCCCCCCccCCC------CC---------CHHHHHH-H
Confidence 44445577765321 1112222333 333222 2233443 4589999999864 22 4555555 4
Q ss_pred CCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhhccC
Q psy17575 583 FPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDT 620 (832)
Q Consensus 583 ~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l~~~ 620 (832)
|.++++|-|++..+-...+..++++.+...+++.+++.
T Consensus 609 yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~kl 646 (821)
T 1ile_A 609 FGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTL 646 (821)
T ss_dssp TCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHHTHHHH
T ss_pred hCHHHHHHHHHhCCCCCCCcEecHHHHHHHHHHHHHHH
Confidence 89999999999998778889999999988655565543
No 80
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=77.42 E-value=1.6 Score=47.99 Aligned_cols=83 Identities=13% Similarity=0.015 Sum_probs=40.5
Q ss_pred CcceeeecccccccchhHHHHHHhcCCCCCCccccccc-CCCCcccchhHHHHhhhcCccCCCCCc--chhhHHHHHHcC
Q psy17575 506 HITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRL-NVNYTVVSKRKIAKLIEENIVNDWDDP--RLFTLTALRRRG 582 (832)
Q Consensus 506 gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL-~l~gtkLSKRk~~~lv~~g~v~gwdDP--r~~tL~~lrrrG 582 (832)
+.++++.|.|-..+-..-.-|...++..+|+......| .++|+||||+..+ .+ .-+|. -...+.....+
T Consensus 210 ~~~i~p~G~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~~ldG~KMSKS~~n------aI-~L~d~~tsp~~i~~ki~~- 281 (356)
T 2pid_A 210 GCRVQLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLITSTTGAKLGKSAGN------AV-WLNRDKTSPFELYQFFVR- 281 (356)
T ss_dssp CCCEEEEEGGGHHHHHHHHHHHHHHSSCCCEEEEECCCC-------------------CC-BSSTTTSCHHHHHHHHHT-
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCcccccCCCCC------ee-eccCCCCCHHHHHHHHHc-
Confidence 78999999997766555556777788766654443333 3579999999643 22 12230 12234443333
Q ss_pred CCHHHHHHHHHHhC
Q psy17575 583 FPPEAINKFCARMG 596 (832)
Q Consensus 583 ~~PeAI~nfl~~lG 596 (832)
.+-..+.+|+..+-
T Consensus 282 ~~D~~v~~~l~~~t 295 (356)
T 2pid_A 282 QPDDSVERYLKLFT 295 (356)
T ss_dssp CCHHHHHHHHHHHC
T ss_pred CCchhHHHHHHHHH
Confidence 45455677777653
No 81
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=75.57 E-value=3.6 Score=46.19 Aligned_cols=88 Identities=19% Similarity=0.289 Sum_probs=53.6
Q ss_pred HHHHHHhhhhcCCceEEeeCCCCCCc-CchHHHHHHHHHHHHHHhcCCEEEEeccCC-----Ccc-----c------ccH
Q psy17575 306 HDLLREHIKYTGGKVRTRFPPEPNGI-LHIGHAKAININFGYAAAHNGICFLRYDDT-----NPE-----K------EEE 368 (832)
Q Consensus 306 ~~~~~~hl~~~~~~v~tRFaPsPtG~-LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-----Dp~-----r------~~~ 368 (832)
.+.|.+.|+...-.+.+=|- |||. |||||.. ++.+|..-+..|-.+++=|-|- ||. | +..
T Consensus 19 ~~~L~~~L~~~~~~iy~G~d--PTg~sLHlGh~v-~l~~l~~lQ~~G~~~i~lIgd~ta~igdpsgk~~~R~~l~~e~i~ 95 (419)
T 2ts1_A 19 EDGLRKLLNEERVTLYCGFD--PTADSLHIGHLA-TILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETVE 95 (419)
T ss_dssp HHHHHHHHHHSCCEEEEEEC--CSSSSCBGGGHH-HHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHH
T ss_pred HHHHHHHHcCCCCEEEEeeC--CCCCCccHHHHH-HHHHHHHHHHCCCcEEEEEcCceeEecCCCCccccccCCCHHHHH
Confidence 56677777633333445554 6799 9999988 6888877777777777766552 453 2 122
Q ss_pred HHHHHHHHHH-HHcCCC--cCc--ccccchhHH
Q psy17575 369 KFFTGIKDMV-QWLGYK--PYQ--ITHSSDYFH 396 (832)
Q Consensus 369 e~~~~I~edL-~WLGl~--pd~--~~~qSd~~~ 396 (832)
+....|.+.+ .||++. |++ +..||+...
T Consensus 96 ~n~~~~~~q~~~~L~~g~dp~k~~i~~ns~w~~ 128 (419)
T 2ts1_A 96 AWSARIKEQLGRFLDFEADGNPAKIKNNYDWIG 128 (419)
T ss_dssp HHHHHHHHHHTTSSCSSCSSSCCEEEETHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEchhhhh
Confidence 4444554533 345554 553 567777543
No 82
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=74.38 E-value=3.3 Score=49.94 Aligned_cols=91 Identities=8% Similarity=0.056 Sum_probs=57.9
Q ss_pred CcceeeecccccccchhHH-HHHHhc-CC-CCCCcc-cccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHc
Q psy17575 506 HITHSLCTKEFQSRRSSYY-WLCNAL-DI-YCPVQW-EYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRR 581 (832)
Q Consensus 506 gITHvlRg~E~~~~~~~~~-~L~~aL-~~-~~P~~~-ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrr 581 (832)
.+..-+=|.|++.....+. .+..++ +. ..|..| ..+++..+|.|||||+++ .| ++..+.+.
T Consensus 603 p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~~G~KMSKS~GN------vv---------~p~dli~~ 667 (810)
T 1wkb_A 603 PLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGN------VL---------NFIDAIEE 667 (810)
T ss_dssp SCSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEETTBCCCTTTTC------CC---------BHHHHHHH
T ss_pred CceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEeCCeehhhcCCC------cC---------CHHHHHHH
Confidence 3444556888875333332 223332 32 224332 356677799999999964 22 44555543
Q ss_pred CCCHHHHHHHHHHhCCCCCCcccCHHHHHHH
Q psy17575 582 GFPPEAINKFCARMGVTGAQAVVSPNMLEAV 612 (832)
Q Consensus 582 G~~PeAI~nfl~~lG~s~~~~~~~~~~le~~ 612 (832)
|.++++|-|++..+-...+..++.+.+...
T Consensus 668 -yGaDalR~~ll~~~~~~~d~~fs~~~~~~~ 697 (810)
T 1wkb_A 668 -NGADVVRLYIMSLAEHDSDFDWRRKEVGKL 697 (810)
T ss_dssp -HCHHHHHHHHHHHCCTTCCEEECHHHHHHH
T ss_pred -cChHHHHHHHHhcCCCCCCcccCHHHHHHH
Confidence 779999999988777778888998877664
No 83
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=72.34 E-value=5.1 Score=49.39 Aligned_cols=90 Identities=8% Similarity=0.056 Sum_probs=56.7
Q ss_pred cceeeecccccccchhHHHH-HHhc-CC-CCCCcc-cccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcC
Q psy17575 507 ITHSLCTKEFQSRRSSYYWL-CNAL-DI-YCPVQW-EYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRG 582 (832)
Q Consensus 507 ITHvlRg~E~~~~~~~~~~L-~~aL-~~-~~P~~~-ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG 582 (832)
+..-+=|.|++.....+..+ ..++ +. ..|..| .-|++..+|.||||++++ . .+...+.+ .
T Consensus 604 ~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~~G~KMSKS~GN------v---------v~p~d~i~-~ 667 (967)
T 1wz2_A 604 LDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGN------V---------LNFIDAIE-E 667 (967)
T ss_dssp CSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEESSSCCCTTTCC------C---------CBHHHHHH-T
T ss_pred CeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEeeCCEEccccccC------C---------CCHHHHHH-H
Confidence 34445688886543333222 2332 32 123322 246666789999999964 2 24555555 3
Q ss_pred CCHHHHHHHHHHhCCCCCCcccCHHHHHHH
Q psy17575 583 FPPEAINKFCARMGVTGAQAVVSPNMLEAV 612 (832)
Q Consensus 583 ~~PeAI~nfl~~lG~s~~~~~~~~~~le~~ 612 (832)
|.+.|+|-|++..+-...+..++.+.+...
T Consensus 668 yGaDalR~~ll~~~~~~~d~~fs~~~~~~~ 697 (967)
T 1wz2_A 668 NGADVVRLYIMSLAEHDSDFDWRRKEVGKL 697 (967)
T ss_dssp TCHHHHHHHHHHHCCTTCCEEECHHHHHHH
T ss_pred hChHHHHHHHHhCCCCCCCcccCHHHHHHH
Confidence 889999999988887778888888776554
No 84
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=48.51 E-value=74 Score=29.75 Aligned_cols=44 Identities=11% Similarity=0.218 Sum_probs=34.9
Q ss_pred HHhHHHHHHHHHhCCCc-cCHHHHHHHcCCcEEeCHHHHHHHHHHH
Q psy17575 144 TLRVDAALEYVLSHVNA-VNEKELEASCGVGVIVTSEDIEETVSKV 188 (832)
Q Consensus 144 ~~Ql~aAlkyl~~~~~~-~d~~~Fe~~cGVGV~VT~EqI~~~V~~~ 188 (832)
...+..|++.+-.+... ++.++|...+. |..+|++++.+.+..+
T Consensus 107 ~~~~~~~F~~~D~d~~G~I~~~El~~~l~-~~~~~~~~~~~~~~~~ 151 (180)
T 3mse_B 107 STFLKAAFNKIDKDEDGYISKSDIVSLVH-DKVLDNNDIDNFFLSV 151 (180)
T ss_dssp -CHHHHHHHHHCTTCSSCBCHHHHHHHTT-TSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHc-CCCCCHHHHHHHHHHh
Confidence 36788999988655433 99999999998 8889999987776654
No 85
>1h8b_A ACT-EF34, alpha-actinin 2, skeletal muscle isoform; structural protein, Z-DISK structural complex; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=42.05 E-value=36 Score=28.78 Aligned_cols=41 Identities=12% Similarity=0.206 Sum_probs=33.1
Q ss_pred CCCCHHhHHHHHHHHHhCCCc-cCHHHHHHHcCCcEEeCHHHHHHHHHH
Q psy17575 140 ALDSTLRVDAALEYVLSHVNA-VNEKELEASCGVGVIVTSEDIEETVSK 187 (832)
Q Consensus 140 klkt~~Ql~aAlkyl~~~~~~-~d~~~Fe~~cGVGV~VT~EqI~~~V~~ 187 (832)
...|..||-+|++-+ +.+.. |..+++.. .+|+|||+..|+.
T Consensus 5 ~~~~~eel~eAFr~f-~dg~G~It~~eLr~------~lt~eevd~~i~~ 46 (75)
T 1h8b_A 5 DTDTAEQVIASFRIL-ASDKPYILAEELRR------ELPPDQAQYCIKR 46 (75)
T ss_dssp CCSTHHHHHHHHHHH-TTSCSSBCHHHHHH------HSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-hcCCCCcCHHHHHh------cCCHHHHHHHHHh
Confidence 345889999999988 55445 99999999 4999998777765
No 86
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=39.29 E-value=41 Score=41.01 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=39.8
Q ss_pred CCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHH
Q psy17575 544 NVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAV 612 (832)
Q Consensus 544 ~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~ 612 (832)
..+|.||||++++ .| +...+.+ .|.+.|+|-|++..+-...+..++++.++..
T Consensus 523 d~~G~KMSKSlGN------vI---------dP~dli~-~yGaDalR~~ll~~~~~~~D~~fs~~~l~~~ 575 (862)
T 1gax_A 523 DEKGQKMSKSKGN------VI---------DPLEMVE-RYGADALRFALIYLATGGQDIRLDLRWLEMA 575 (862)
T ss_dssp CTTSCBCCTTTTC------CC---------CHHHHHH-HHCHHHHHHHHHHHCCTTCCEECCHHHHHHH
T ss_pred cCCCCCccccCCC------CC---------CHHHHHH-HcChHHHHHHHHhcCCCCCCCccCHHHHHHH
Confidence 3589999999964 22 3334443 3779999999999887788889999887764
No 87
>2ot3_A RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain, vesicular traffic, protein transport; 2.10A {Homo sapiens} SCOP: a.222.1.1 PDB: 1txu_A
Probab=32.64 E-value=64 Score=33.79 Aligned_cols=68 Identities=6% Similarity=0.110 Sum_probs=50.9
Q ss_pred CCCcchhhhHHHHHHhhccCCCccchHHHHHHHHhCCCCC-HH-----hHHHHHHHHHhCCCc---cCHHHHHHHcC
Q psy17575 104 PHSLQDCGSLLYHLASKIKSQSSIHLPLLVKYIVSKALDS-TL-----RVDAALEYVLSHVNA---VNEKELEASCG 171 (832)
Q Consensus 104 ~~~dk~~g~LLy~lAtk~k~~~~~~r~~l~~~I~~gklkt-~~-----Ql~aAlkyl~~~~~~---~d~~~Fe~~cG 171 (832)
.+.|.=.-.|+|-+...-+++-..+..||-.++..+++.+ .. ++.||+.|+++...+ ++.++|++...
T Consensus 187 ~~ADd~LP~Liyvvika~~~~l~s~l~yI~~F~~~~~l~~GE~gY~lttl~aAv~fI~~l~~~~L~i~~~ef~~~~~ 263 (274)
T 2ot3_A 187 ASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMS 263 (274)
T ss_dssp BCHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHSCTTTTTSSHHHHHHHHHHHHHHHHHHCCTGGGTCCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHcCcchHHHHHHHHHHHcCcccccCCHHHHHHHHHHHHHHHHHhCCHHhcCCCHHHHHHHHh
Confidence 3467778888998887766665566788888887777643 33 599999999987543 88889988764
No 88
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=31.74 E-value=26 Score=43.04 Aligned_cols=55 Identities=11% Similarity=0.012 Sum_probs=38.5
Q ss_pred ccccCC-CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHH
Q psy17575 540 YGRLNV-NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEA 611 (832)
Q Consensus 540 f~hL~l-~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~ 611 (832)
.|++.. +|.|||||+++ .| +...+.+ .|.+++++-|++. +-...+..|+++.++.
T Consensus 585 hG~V~d~~G~KMSKSlGN------vV---------~P~dvi~-~yGaDalR~~lls-~~~~~D~~fs~~~l~~ 640 (917)
T 1ffy_A 585 HGFVMDGEGKKMSKSLGN------VI---------VPDQVVK-QKGADIARLWVSS-TDYLADVRISDEILKQ 640 (917)
T ss_dssp ECCEECTTSCCCCSSSSC------CC---------CHHHHHH-HTCHHHHHHHHHT-SCTTSCEECCHHHHHH
T ss_pred eeeEEcCCCcCcccccCC------cC---------ChHHHHH-hCCHHHHHHHHhc-cCCCCCcccCHHHHHH
Confidence 355553 79999999864 22 3444444 4889999999997 5556677888876654
No 89
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A
Probab=27.99 E-value=2.6e+02 Score=26.21 Aligned_cols=107 Identities=6% Similarity=0.018 Sum_probs=51.4
Q ss_pred HHHHHHHHHhCCCCchhhHHhhc-------CHhH-HHHHHHHHHHhcccCCCCcchhhhHHHHHHhhccCCCccchHHHH
Q psy17575 62 ADSMISAFLSVGLNEKKAKETLK-------NETL-STYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQSSIHLPLLV 133 (832)
Q Consensus 62 ~~~l~~lF~~iGL~e~kAketlK-------N~kl-s~~L~~iI~ea~~~~~~~dk~~g~LLy~lAtk~k~~~~~~r~~l~ 133 (832)
.+++-.++..+|+++...+++.+ +..+ ...|..++...+. ...+...-.-++...-.-.........++.
T Consensus 18 ~~el~~~~~~~~~~~~~i~~~f~~~d~~~~~G~i~~~ef~~~l~~~~~--~~~~~~~~~~~f~~~D~d~~G~i~~~Ef~~ 95 (207)
T 2d8n_A 18 KEILEELQLNTKFSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFP--DTDPKAYAQHVFRSFDSNLDGTLDFKEYVI 95 (207)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHTCT--TSCCHHHHHHHHHHHCTTCCSEEEHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhcc--CCCcHHHHHHHHHHhcCCCCCeEeHHHHHH
Confidence 46677888889999888887653 2222 1234444433332 111222222233332221111122223332
Q ss_pred HHHHhCCCCCHHhHHHHHHHHHhCCCc-cCHHHHHHHc
Q psy17575 134 KYIVSKALDSTLRVDAALEYVLSHVNA-VNEKELEASC 170 (832)
Q Consensus 134 ~~I~~gklkt~~Ql~aAlkyl~~~~~~-~d~~~Fe~~c 170 (832)
-.-.-+.-.+...+..+++.+-.+... |+.++|...+
T Consensus 96 ~~~~~~~~~~~~~~~~~f~~~D~d~~G~I~~~E~~~~l 133 (207)
T 2d8n_A 96 ALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIV 133 (207)
T ss_dssp HHHHHSCSSSSTTHHHHHHHHCTTCSSEECHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHhcCCCCCeEcHHHHHHHH
Confidence 222223334556777888766544333 7777777655
No 90
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=27.51 E-value=1.8e+02 Score=26.09 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=35.8
Q ss_pred CCCHHhHHHHHHHHHhCCCc-cCHHHHHHHcC-CcEEeCHHHHHHHHHHH
Q psy17575 141 LDSTLRVDAALEYVLSHVNA-VNEKELEASCG-VGVIVTSEDIEETVSKV 188 (832)
Q Consensus 141 lkt~~Ql~aAlkyl~~~~~~-~d~~~Fe~~cG-VGV~VT~EqI~~~V~~~ 188 (832)
..+...+..|++.+-..... |+.++|...+. +|..+|+++|.+.+..+
T Consensus 79 ~~~~~~l~~aF~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~ 128 (148)
T 2lmt_A 79 TDTEEEMREAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIREA 128 (148)
T ss_dssp TTTHHHHHHHHHHHHSSCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHCCCCcCcCcHHHHHHHHHHcCccccHHHHHHHHHHh
Confidence 34557789999988766544 99999988764 47788999977766543
No 91
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Probab=25.46 E-value=65 Score=29.90 Aligned_cols=47 Identities=23% Similarity=0.186 Sum_probs=37.4
Q ss_pred CCCHHhHHHHHHHHHhCCCc-cCHHHHHHHcCCcEEeCHHHHHHHHHHH
Q psy17575 141 LDSTLRVDAALEYVLSHVNA-VNEKELEASCGVGVIVTSEDIEETVSKV 188 (832)
Q Consensus 141 lkt~~Ql~aAlkyl~~~~~~-~d~~~Fe~~cGVGV~VT~EqI~~~V~~~ 188 (832)
..+...+..+++.+-.+... ++.++|...+. |..+|++++...+..+
T Consensus 119 ~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~-~~~~~~~~~~~~~~~~ 166 (191)
T 3khe_A 119 LLSRERLLAAFQQFDSDGSGKITNEELGRLFG-VTEVDDETWHQVLQEC 166 (191)
T ss_dssp HCCHHHHHHHHHHHCTTCSSEECHHHHHHHTT-SSCCCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHCCCCcCcCCHHHHHHHHc-cCCCCHHHHHHHHHHh
Confidence 34567889999988655444 99999999999 9999999977766554
No 92
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=24.71 E-value=3.2e+02 Score=23.65 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=32.8
Q ss_pred HHhHHHHHHHHHhCCCc-cCHHHHHHHcC--CcEEeCHHHHHHHHHHH
Q psy17575 144 TLRVDAALEYVLSHVNA-VNEKELEASCG--VGVIVTSEDIEETVSKV 188 (832)
Q Consensus 144 ~~Ql~aAlkyl~~~~~~-~d~~~Fe~~cG--VGV~VT~EqI~~~V~~~ 188 (832)
...+..|++.+-..... ++.++|...+. .|..+|++++...+..+
T Consensus 87 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 134 (153)
T 3ox6_A 87 VKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDV 134 (153)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 45678888877554433 99999988765 57788999977766544
No 93
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=24.58 E-value=1.1e+02 Score=31.75 Aligned_cols=152 Identities=14% Similarity=0.158 Sum_probs=91.8
Q ss_pred HHHHHHHh--CCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCc--c-------hhhhHHHHHHhhccCCCccc----
Q psy17575 64 SMISAFLS--VGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSL--Q-------DCGSLLYHLASKIKSQSSIH---- 128 (832)
Q Consensus 64 ~l~~lF~~--iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~d--k-------~~g~LLy~lAtk~k~~~~~~---- 128 (832)
+.++.|++ .-+.-+...|+-+||.+...+.+.....|++ ++. | ..|..-|.||.++-.-+...
T Consensus 14 ~Ql~~F~~~L~~FA~kH~~eI~~dp~fR~~F~~mc~siGVD--Plas~kg~ws~~lG~gdfy~eLavqIvEvC~~tr~~n 91 (234)
T 3cuq_A 14 KQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVD--PLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRN 91 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCC--TTSCTTSHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHHcCCC--cccCCcchhhhhcCcchHHHHHHHHHHHHHHHHHHhc
Confidence 34445554 4455677899999999999999999999984 333 2 25778888987765433222
Q ss_pred -----hHHHHHHHHh--C---CCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHH-HHHHHHHHHHHHHHHHHH
Q psy17575 129 -----LPLLVKYIVS--K---ALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSE-DIEETVSKVVEKHKAELL 197 (832)
Q Consensus 129 -----r~~l~~~I~~--g---klkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~E-qI~~~V~~~i~~~k~~l~ 197 (832)
..-|...+.. | ..-|++-|-.|++-|+..+..+..-.|. |+=++.|.- ++..-...+++- +.
T Consensus 92 GGli~L~el~~~~~r~Rg~~~~~IS~dDi~rAik~L~~LG~g~~v~~~~---g~~~VqSvp~el~~D~~~vLel----a~ 164 (234)
T 3cuq_A 92 GGLITLEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVG---GTYLIQSVPAELNMDHTVVLQL----AE 164 (234)
T ss_dssp SSEEEHHHHHHHHHHTTTTCCSSCCHHHHHHHHHHHGGGBTTCEEEEET---TEEEEECSCCCCCHHHHHHHHH----HT
T ss_pred CCeeEHHHHHHHHHHhcCCccCccCHHHHHHHHHHHHhcCCCeEEEEEC---CEEEEEeCCCccchHHHHHHHH----HH
Confidence 3455555543 2 4668888999999887765435555554 444442211 121111222221 12
Q ss_pred hcccccchhhhHHHHHhhCCCCChhhhHHHHHH
Q psy17575 198 DKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDV 230 (832)
Q Consensus 198 ~~ry~~n~g~ll~~vR~~LkWAd~k~vK~~vD~ 230 (832)
..+|- ....++..|.|. ..-.|..++.
T Consensus 165 ~~g~v-----t~~~L~~~l~W~-~~Ra~~~L~~ 191 (234)
T 3cuq_A 165 KNGYV-----TVSEIKASLKWE-TERARQVLEH 191 (234)
T ss_dssp TTSEE-----CHHHHHHHHTCC-HHHHHHHHHH
T ss_pred hcCcC-----cHHHHHHHhCCC-HHHHHHHHHH
Confidence 35554 556667789994 4455666665
No 94
>2f40_A Hypothetical protein PF1455; protein structure prediction, residual dipolar couplings, PY furious, simulated annealing, structural genomics; NMR {Pyrococcus furiosus} SCOP: i.11.1.1
Probab=24.27 E-value=28 Score=30.86 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=15.0
Q ss_pred hcCCEEEEeccCCCcccccH
Q psy17575 349 AHNGICFLRYDDTNPEKEEE 368 (832)
Q Consensus 349 ~~gG~~iLRiDDTDp~r~~~ 368 (832)
.+|.+|||+|.|+||++...
T Consensus 6 ~~~~~~~~kfg~It~EeA~~ 25 (96)
T 2f40_A 6 HHGSKWIKFTTNLTPEEAKI 25 (96)
T ss_dssp ---CCEEECCCSCTTTTTHH
T ss_pred cccchheeecCCCCHHHHHH
Confidence 57899999999999987643
No 95
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=23.92 E-value=59 Score=39.71 Aligned_cols=49 Identities=12% Similarity=-0.002 Sum_probs=36.4
Q ss_pred cccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHH
Q psy17575 548 TVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAV 612 (832)
Q Consensus 548 tkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~ 612 (832)
.|||||+++ .| +...+.+ -|-+.|+|-|++..+-...+..++.+.++..
T Consensus 636 ~KMSKSkGN------vV---------dP~diI~-~yGADalRl~ll~~~~~~~D~~fs~~~v~~~ 684 (878)
T 2v0c_A 636 AVMSKSKGN------GV---------MVGPFVK-EQGADIARITILFAAPPENEMVWTEEGVQGA 684 (878)
T ss_dssp EECSGGGTC------CC---------BHHHHHH-HSCHHHHHHHHHHHSCTTSCEEECHHHHHHH
T ss_pred HHhhccCCC------cc---------cHHHHHH-HcCccHHHHHHhccCCCCCCceeCHHHHHHH
Confidence 899999964 22 3444444 2779999999999887778888888776553
No 96
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=22.82 E-value=37 Score=29.69 Aligned_cols=42 Identities=14% Similarity=0.301 Sum_probs=30.6
Q ss_pred hHHHHHHHHHhCCCc-cCHHHHHHHcC-CcEEeCHHHHHHHHHH
Q psy17575 146 RVDAALEYVLSHVNA-VNEKELEASCG-VGVIVTSEDIEETVSK 187 (832)
Q Consensus 146 Ql~aAlkyl~~~~~~-~d~~~Fe~~cG-VGV~VT~EqI~~~V~~ 187 (832)
++..|++.+-.+... |+..+|...+. +|+.+|++||++.+++
T Consensus 37 el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~ 80 (100)
T 2lv7_A 37 EIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQR 80 (100)
T ss_dssp HHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 467788877555433 99999987764 4788999997766654
No 97
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=22.48 E-value=3.5e+02 Score=29.13 Aligned_cols=142 Identities=15% Similarity=0.146 Sum_probs=78.5
Q ss_pred HHHHHHHHHhCCCCchhhHHh-hcCHh-HHHHHHHHHHHhcccCCCCcchhhhHHHHHHhhccCCCccchHHHHHHHHhC
Q psy17575 62 ADSMISAFLSVGLNEKKAKET-LKNET-LSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQSSIHLPLLVKYIVSK 139 (832)
Q Consensus 62 ~~~l~~lF~~iGL~e~kAket-lKN~k-ls~~L~~iI~ea~~~~~~~dk~~g~LLy~lAtk~k~~~~~~r~~l~~~I~~g 139 (832)
-+..+..|..+|++..++..+ .+|+. +..+|..+|+.-.. .+-.++.++.+|-. . +.|..
T Consensus 46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~~l~~~i~~L~~-LGls~e~V~kiL~k-------~-----P~lL~----- 107 (335)
T 4fp9_B 46 LERVMSSLLDMGFSNAHINELLSVRRGASLQQLLDIISEFIL-LGLNPEPVCVVLKK-------S-----PQLLK----- 107 (335)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCSSCCHHHHHHHHHHHHH-TTCCHHHHHHHHHH-------C-----GGGGG-----
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhCcccchhHHHHHHHHHHH-cCCCHHHHHHHHHh-------C-----hhhcc-----
Confidence 466788899999999999998 45776 45666666665544 12123444443321 1 11111
Q ss_pred CCCCHHhHHHHHHHHHhCCCc-cCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHh--hC
Q psy17575 140 ALDSTLRVDAALEYVLSHVNA-VNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRT--LL 216 (832)
Q Consensus 140 klkt~~Ql~aAlkyl~~~~~~-~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vR~--~L 216 (832)
.|..+|...+.|+++.+-. -+....-..|.==+..+.|.|...|.- +..++-|+-..+..-|++ .+
T Consensus 108 --~s~e~L~~~l~fL~~lGl~~~~i~~ll~~~P~lL~~s~e~i~~~v~~---------L~~~lGfS~~ev~~mv~r~P~l 176 (335)
T 4fp9_B 108 --LPIMQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRL---------LKEKCLFTVQQVTKILHSCPSV 176 (335)
T ss_dssp --SCHHHHHHHHHHHHHTTCTTTTHHHHHHHCGGGGTSCHHHHHHHHHH---------HHHTSCCCHHHHHHHHHHCGGG
T ss_pred --CCHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhccChHHHHHHHHH---------HHHHcCCCHHHHHHHHHhCChh
Confidence 1345688888888876433 344455555544455566665544432 223444444555555554 22
Q ss_pred CCCChhhhHHHHHHHH
Q psy17575 217 KWADGKYIKSEVDVQV 232 (832)
Q Consensus 217 kWAd~k~vK~~vD~~~ 232 (832)
=-.+...++.-++=.+
T Consensus 177 L~~S~e~L~~K~efLv 192 (335)
T 4fp9_B 177 LREDLGQLEYKFQYAY 192 (335)
T ss_dssp GTSCHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHH
Confidence 2334455666555433
No 98
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=22.19 E-value=95 Score=28.94 Aligned_cols=47 Identities=9% Similarity=0.050 Sum_probs=35.2
Q ss_pred CCCHHhHHHHHHHHHhCCCc-cCHHHHHHHc-CCcEEeCHHHHHHHHHH
Q psy17575 141 LDSTLRVDAALEYVLSHVNA-VNEKELEASC-GVGVIVTSEDIEETVSK 187 (832)
Q Consensus 141 lkt~~Ql~aAlkyl~~~~~~-~d~~~Fe~~c-GVGV~VT~EqI~~~V~~ 187 (832)
..+..+|..|++.+-..... |+..+|.+.+ -+|..+|++||.+.++.
T Consensus 81 ~~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~e~~~l~~~ 129 (159)
T 3i5g_C 81 GTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTF 129 (159)
T ss_dssp TCCHHHHHHHHHHHCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 44567899999988655444 9999998774 36788999997766553
No 99
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=22.18 E-value=2.3e+02 Score=31.85 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=33.2
Q ss_pred CCHHhHHHHHHHHHhCCCc-cCHHHHHHHcC-CcEEeCHHHHHHHHHHH
Q psy17575 142 DSTLRVDAALEYVLSHVNA-VNEKELEASCG-VGVIVTSEDIEETVSKV 188 (832)
Q Consensus 142 kt~~Ql~aAlkyl~~~~~~-~d~~~Fe~~cG-VGV~VT~EqI~~~V~~~ 188 (832)
.+..+|..|++.+-..... |+.++|.+.+- +|..+|++||++.++++
T Consensus 372 d~eeeLreAFk~fDkDgdG~IS~eELr~vL~~lGe~LSdeEIdeLfke~ 420 (440)
T 3u0k_A 372 DSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 420 (440)
T ss_dssp --CHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 3557899999988655433 99999887653 47789999977666543
No 100
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=21.63 E-value=56 Score=39.95 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=35.6
Q ss_pred ccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHH
Q psy17575 549 VVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAV 612 (832)
Q Consensus 549 kLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~ 612 (832)
||||++++ .| +...+.++ |-+.++|-|++..+-..++..++.+.++..
T Consensus 639 KMSKSkGN------vV---------dP~diIek-YGADalRl~ll~~~~~~~dl~~s~~~ie~a 686 (880)
T 4arc_A 639 KMSKSKNN------GI---------DPQVMVER-YGADTVRLFMMFASPADMTLEWQESGVEGA 686 (880)
T ss_dssp ECCTTTTC------CC---------CHHHHHHH-HCHHHHHHHHHHSSCTTSCEECCHHHHHHH
T ss_pred cccCcCCC------CC---------CHHHHHHH-cCchHHHHHHHhcCCCCCCcccCHHHHHHH
Confidence 99999974 22 34455443 889999999999987777778887766543
No 101
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=21.49 E-value=1.3e+02 Score=25.32 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=39.7
Q ss_pred cchHHHHHHHHhCCCCCHHhHHHHHHHHHhCCCc-cCHHHHHHHc-CCcEEeCHHHHHHHHHH
Q psy17575 127 IHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNA-VNEKELEASC-GVGVIVTSEDIEETVSK 187 (832)
Q Consensus 127 ~~r~~l~~~I~~gklkt~~Ql~aAlkyl~~~~~~-~d~~~Fe~~c-GVGV~VT~EqI~~~V~~ 187 (832)
.+...+...+.. -.+..++..+++.+-.+... ++.++|...+ .+|..+|++++++.++.
T Consensus 13 ~~~~~~~~~~~~--~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~ 73 (94)
T 2kz2_A 13 GENLYFQSLMKD--TDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIRE 73 (94)
T ss_dssp CCTHHHHHHHCC--CSCHHHHHHHHHHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHhcC--CCHHHHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 344555554432 34678899999887655444 9999988765 34777899997766554
No 102
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=20.79 E-value=60 Score=31.17 Aligned_cols=60 Identities=13% Similarity=0.106 Sum_probs=39.1
Q ss_pred hHHHHHHHHhCCCCCHHhHHHHHHHHHhCCCc-cCHHHHHHHcCC---cEEeCHHHHHHHHHHH
Q psy17575 129 LPLLVKYIVSKALDSTLRVDAALEYVLSHVNA-VNEKELEASCGV---GVIVTSEDIEETVSKV 188 (832)
Q Consensus 129 r~~l~~~I~~gklkt~~Ql~aAlkyl~~~~~~-~d~~~Fe~~cGV---GV~VT~EqI~~~V~~~ 188 (832)
..++.-........+...+..|++.+-..... |+.++|.+.++- |..+|++++.+.+..+
T Consensus 113 ~EF~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~~~~~~~~~~l~~~~ 176 (197)
T 3pm8_A 113 TDFLAATIDKQTYLKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEV 176 (197)
T ss_dssp HHHHHTTCCHHHHCSHHHHHHHHHHHCTTCSSEECHHHHHHHHC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccCCCCCHHHHHHHHHHH
Confidence 34443332223345667889999988655444 999999988864 6678888876666544
No 103
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=20.68 E-value=1.4e+02 Score=26.74 Aligned_cols=59 Identities=8% Similarity=-0.058 Sum_probs=41.3
Q ss_pred HHHHHHHhCCCCCHHhHHHHHHHHHhC---CCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHH
Q psy17575 131 LLVKYIVSKALDSTLRVDAALEYVLSH---VNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKH 192 (832)
Q Consensus 131 ~l~~~I~~gklkt~~Ql~aAlkyl~~~---~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~ 192 (832)
-+++-|.+..-.|...++.+|..+..+ |.. ..==|--. -|...|||.|-+.|.+|=++|
T Consensus 17 ~lv~~I~~~~~~~E~e~d~ll~~fe~iteHP~g-SDLIfyP~--~~~e~SPEgIv~~IKeWRa~n 78 (94)
T 3u43_A 17 EFVKKICRAEGATEEDDNKLVREFERLTEHPDG-SDLIYYPR--DDREDSPEGIVKEIKEWRAAN 78 (94)
T ss_dssp HHHHHHHHTCCSSHHHHHHHHHHHHHHHCCTTT-THHHHSCC--TTSCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCCc-cCeeeeCC--CCCCCCHHHHHHHHHHHHHHc
Confidence 457888888888999999999987654 321 11112211 278899999999998886653
No 104
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=20.35 E-value=3.2e+02 Score=22.83 Aligned_cols=48 Identities=10% Similarity=0.121 Sum_probs=35.6
Q ss_pred CCCHHhHHHHHHHHHhCCCc-cCHHHHHHHcCC----cEEeCHHHHHHHHHHH
Q psy17575 141 LDSTLRVDAALEYVLSHVNA-VNEKELEASCGV----GVIVTSEDIEETVSKV 188 (832)
Q Consensus 141 lkt~~Ql~aAlkyl~~~~~~-~d~~~Fe~~cGV----GV~VT~EqI~~~V~~~ 188 (832)
-.+..++..|++.+-.+... ++..+|...+.- |..+|+++++..+..+
T Consensus 38 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (109)
T 3fs7_A 38 SKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAG 90 (109)
T ss_dssp TCCHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccccCCHHHHHHHHHHh
Confidence 34677899999988665444 999999877642 7889999977666543
No 105
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=20.34 E-value=2.2e+02 Score=30.96 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=39.4
Q ss_pred eEEeeCCCCCCc-CchHHHHHHHHHHHHHHhcCCEEEEeccCC-----Ccc-----c------ccHHHHHHHHHHHHHcC
Q psy17575 320 VRTRFPPEPNGI-LHIGHAKAININFGYAAAHNGICFLRYDDT-----NPE-----K------EEEKFFTGIKDMVQWLG 382 (832)
Q Consensus 320 v~tRFaPsPtG~-LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-----Dp~-----r------~~~e~~~~I~edL~WLG 382 (832)
+.+=| .|||. |||||+- ++.+|..-+..|..+++=|-|. ||. | +..+....|..++..+
T Consensus 49 vy~G~--~PTg~sLHLGhl~-~l~~~~~lQ~~G~~~~~lIaD~hal~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~a~- 124 (356)
T 2pid_A 49 IYCGF--DPTADSLHVGHLL-ALLGLFHLQRAGHNVIALVGGATARLGDPSGRTKEREALETERVRANARALRLGLEAL- 124 (356)
T ss_dssp EEEEE--CCSSSSCBHHHHH-HHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHHH-
T ss_pred EEEee--cCCCCcccHHHHH-HHHHHHHHHHCCCcEEEEEccceeeecCCcccccccccCCHHHHHHHHHHHHHHHHHh-
Confidence 44444 46796 9999955 7888877777788777776552 442 1 2234555566666555
Q ss_pred CCc
Q psy17575 383 YKP 385 (832)
Q Consensus 383 l~p 385 (832)
++|
T Consensus 125 lDp 127 (356)
T 2pid_A 125 AAN 127 (356)
T ss_dssp HHH
T ss_pred cCh
Confidence 555
No 106
>3lvy_A Carboxymuconolactone decarboxylase family; alpha-structure, structural genomics, PSI-2, protein structure initiative; 2.10A {Streptococcus mutans}
Probab=20.02 E-value=6.3e+02 Score=24.81 Aligned_cols=123 Identities=12% Similarity=0.076 Sum_probs=71.1
Q ss_pred HHHHHHH-HhC-CCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHHHHHhhccCCCc-------------c
Q psy17575 63 DSMISAF-LSV-GLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQSS-------------I 127 (832)
Q Consensus 63 ~~l~~lF-~~i-GL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy~lAtk~k~~~~-------------~ 127 (832)
.++++.+ ... |.-..=-+=...+|.+...+..+..... .++++....-|+.-.++...+-.- -
T Consensus 39 ~~~~~~~~~~~~G~vpn~~~~la~~P~~l~a~~~l~~~l~--~~~L~~~~rELi~l~vS~~ngC~yC~~~H~~~a~~~~G 116 (207)
T 3lvy_A 39 KETLRTVKKDNGGYIPNLIGLLANAPTALETYRTVGEINR--RNSLTPTEREVVQITAAVTNGCAFCVAGHTAFSIKQIQ 116 (207)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHTTSHHHHHHHHHHHHHHH--TSSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHhCHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC
Confidence 3444433 345 7665555555667877777766544322 355777766665544433222100 0
Q ss_pred chHHHHHHHHhCC-CCCHHhHHHHHHHHHhC---CCccCHHHHHHHcCCcEEeCHHHHHHHHHHHH
Q psy17575 128 HLPLLVKYIVSKA-LDSTLRVDAALEYVLSH---VNAVNEKELEASCGVGVIVTSEDIEETVSKVV 189 (832)
Q Consensus 128 ~r~~l~~~I~~gk-lkt~~Ql~aAlkyl~~~---~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i 189 (832)
--+..+..+.++. +..+.+..|+++|.... +..++.+.|+.....| .|++||-++|.-+-
T Consensus 117 ~~~e~i~a~r~~~~~~~~~~erA~l~~a~~lt~~~~~v~d~~~~~l~~ag--fsd~eivel~~~ia 180 (207)
T 3lvy_A 117 MAPDLLEALRNATPIDDDPKLDTLAKFTIAVINTKGRVGDEAFADFLEVG--YTPENALDVVLGVS 180 (207)
T ss_dssp CCHHHHHHHHHTCCCSSCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHTT--CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHcC--CCHHHHHHHHHHHH
Confidence 0122345666665 32468888999997543 2348888888876444 68999887766543
Done!